[222] | 1 | #!/bin/ksh |
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| 2 | |
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| 3 | #************************************************************** |
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[373] | 4 | # Author: Sebastien Denvil, Martial Mancip, Arnaud Caubel |
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| 5 | # Contact: Arnaud.Caubel__at__lsce.ipsl.fr |
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| 6 | # $Revision:: $ Revision of last commit |
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| 7 | # $Author:: $ Author of last commit |
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| 8 | # $Date:: $ Date of last commit |
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[222] | 9 | # IPSL (2006) |
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| 10 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 11 | # |
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| 12 | #************************************************************** |
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| 13 | |
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| 14 | #========================================================= |
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| 15 | # The documentation of this file can be automatically generated |
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[623] | 16 | # if you use the prefix #D- for comments to be extracted. |
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[222] | 17 | # Extract with command: cat lib* | grep "^#D-" | cut -c "4-" |
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| 18 | #========================================================= |
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| 19 | |
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| 20 | #D-#================================================== |
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| 21 | #D-LibIGCM_sys for Titane |
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| 22 | #D-#================================================== |
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| 23 | #D- |
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[623] | 24 | #D- This ksh library if a layer under some usefull |
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[222] | 25 | #D-environment variables and shell commands. |
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| 26 | #D-All those definitions depend on host particularities. |
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| 27 | #D-It manages a stack mechanism and test validity of operations. |
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| 28 | #D-All function described bellow must be prefixed by IGCM_sys. |
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| 29 | |
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| 30 | #==================================================== |
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| 31 | # libIGCM_sys PARAMETERS |
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| 32 | #==================================================== |
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| 33 | |
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| 34 | #==================================================== |
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| 35 | # set DEBUG_sys to true to output calls of function |
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| 36 | typeset -r DEBUG_sys=${DEBUG_sys:=true} |
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| 37 | |
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| 38 | #==================================================== |
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| 39 | # Turn in dry run mode ? (sys_Put_Rest, sys_Put_Out, sys_Get) |
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| 40 | typeset -r DRYRUN=${DRYRUN:=0} |
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| 41 | |
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| 42 | # YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE ! |
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| 43 | # ------------------------------------------------------------------------------------- |
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[719] | 44 | # | DRYRUN= | Date computations, | sys_Get | Exe | sys_Put_Out; sys_Put_Rest | |
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| 45 | # | | Cp/Exe param files | | Chmod | | |
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| 46 | # | | Qsub | | | | |
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[222] | 47 | # ------------------------------------------------------------------------------------- |
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[719] | 48 | # | 0 | yes | yes | yes | yes | |
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[222] | 49 | # ------------------------------------------------------------------------------------- |
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[719] | 50 | # | 1 | yes | yes | yes | no | |
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[222] | 51 | # ------------------------------------------------------------------------------------- |
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[719] | 52 | # | 2 | yes | yes | no | no | |
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[222] | 53 | # ------------------------------------------------------------------------------------- |
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[719] | 54 | # | 3 | yes | no | no | no | |
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[222] | 55 | # ------------------------------------------------------------------------------------- |
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| 56 | |
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| 57 | #===================================================== |
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| 58 | # Global Variables : |
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| 59 | #===================================================== |
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| 60 | # Language : "fr" or "en" |
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| 61 | typeset -r MYLANG="fr" |
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| 62 | |
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| 63 | #===================================================== |
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[245] | 64 | # Host and user names |
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| 65 | # $hostname ou hostname |
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| 66 | typeset HOST=${HOST:=$( hostname )} |
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[222] | 67 | # $username ou whoami |
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[245] | 68 | typeset LOGIN=${LOGIN:=$( whoami )} |
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[222] | 69 | # $hostname of the MASTER job |
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[544] | 70 | typeset MASTER=titane |
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[222] | 71 | |
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| 72 | #D- |
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| 73 | #D-#================================================== |
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| 74 | #D-Program used in libIGCM |
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| 75 | #D-#================================================== |
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| 76 | |
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[742] | 77 | # Submit command |
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[747] | 78 | typeset SUBMIT=${SUBMIT:=ccc_msub} |
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[222] | 79 | # rsync with path |
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| 80 | typeset -r RSYNC=/usr/bin/rsync |
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| 81 | # RSYNC_opt args to rsync |
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| 82 | typeset -r RSYNC_opt="-va" |
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| 83 | # ie storage filesystem |
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[538] | 84 | typeset -r STOREHOST=${MASTER} |
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[222] | 85 | |
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| 86 | #==================================================== |
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[451] | 87 | # Source default environment |
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| 88 | #==================================================== |
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| 89 | . /etc/profile |
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| 90 | |
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| 91 | #==================================================== |
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[305] | 92 | # Set environment tools (ferret, nco, cdo) |
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| 93 | #==================================================== |
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[451] | 94 | . /home/cont003/p86ipsl/.atlas_env_titane_ksh |
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[648] | 95 | if ( [ X${LSB_QUEUE} = Xmono ] || [ X${LSB_QUEUE} = Xmonoext ] ) ; then |
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[634] | 96 | module switch nco/3.9.4 nco/3.9.4_netcdf4 |
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| 97 | fi |
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[222] | 98 | |
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| 99 | #==================================================== |
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| 100 | # Specific for ocean additionnal diagnostic |
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[451] | 101 | export FER_GO="$FER_GO /home/cont003/p86denv/IGCM_POST_UTIL/JNL /home/cont003/p86denv/GRAF /home/cont003/p86denv/GRAF/GO" |
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| 102 | export FER_PALETTE="$FER_PALETTE /home/cont003/p86denv/GRAF/PALET" |
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[222] | 103 | |
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| 104 | #==================================================== |
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| 105 | # Host specific DIRECTORIES |
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| 106 | #==================================================== |
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| 107 | |
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[544] | 108 | # ============ CESIUM START ============ # |
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| 109 | |
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[222] | 110 | #==================================================== |
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| 111 | #- Mirror libIGCM from titane to cesium if needed |
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[544] | 112 | #ROOTSYS=$( echo ${libIGCM} | gawk -F"/" '{print $3}' ) |
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| 113 | #if [ ! ${ROOTSYS} = "home" ] ; then |
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| 114 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=true} |
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| 115 | #else |
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| 116 | # typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 117 | #fi |
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[222] | 118 | |
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| 119 | #==================================================== |
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| 120 | #- libIGCM_POST |
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[544] | 121 | #if ( ${MirrorlibIGCM} ) ; then |
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| 122 | # PATHlibIGCM=$( echo ${libIGCM} | gawk -F"${LOGIN}/" '{print $2}' | sed -e "s&/libIGCM&&" ) |
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| 123 | # typeset -r libIGCM_POST=${HOME}/MIRROR/${PATHlibIGCM}/libIGCM |
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| 124 | #else |
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| 125 | # typeset -r libIGCM_POST=${libIGCM} |
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| 126 | #fi |
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[222] | 127 | |
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[544] | 128 | # ============ CESIUM END ============ # |
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| 129 | |
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[222] | 130 | #==================================================== |
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[544] | 131 | #- MirrorlibIGCM for frontend |
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| 132 | typeset -r MirrorlibIGCM=${MirrorlibIGCM:=false} |
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| 133 | |
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| 134 | #==================================================== |
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| 135 | #- libIGCM_POST for frontend |
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| 136 | typeset -r libIGCM_POST=${libIGCM} |
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| 137 | |
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| 138 | #==================================================== |
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[587] | 139 | #- R_EXE (==> BIN_DIR = ${MODIPSL}/bin ) |
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| 140 | typeset -r R_EXE="${MODIPSL}/bin" |
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| 141 | |
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| 142 | #==================================================== |
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| 143 | #- SUBMIT_DIR : submission dir |
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| 144 | typeset SUBMIT_DIR=${SUBMIT_DIR:=${LS_SUBCWD}} |
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| 145 | |
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| 146 | #==================================================== |
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[222] | 147 | #- IN |
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[545] | 148 | typeset -r R_IN=${R_IN:=/ccc/work/cont003/dsm/p86ipsl/IGCM} |
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[717] | 149 | typeset -r R_IN_ECMWF=${R_IN_ECMWF:=/ccc/work/cont003/dsm/p24data} |
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[222] | 150 | |
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| 151 | #==================================================== |
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[725] | 152 | #- ARCHIVE (dedicated to large files) |
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| 153 | typeset ARCHIVE=${CCCSTOREDIR} |
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| 154 | |
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| 155 | #==================================================== |
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| 156 | #- STORAGE (dedicated to small/medium files) |
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| 157 | typeset STORAGE=${CCCWORKDIR} |
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| 158 | |
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| 159 | #==================================================== |
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[544] | 160 | #- R_OUT |
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[725] | 161 | typeset R_OUT=${ARCHIVE}/IGCM_OUT |
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[222] | 162 | |
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| 163 | #==================================================== |
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[587] | 164 | #- R_FIG (hosting figures : monitoring and atlas, and/or small files) |
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[725] | 165 | typeset R_FIG=${STORAGE}/IGCM_OUT |
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[587] | 166 | |
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| 167 | #==================================================== |
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[544] | 168 | #- R_BUF (ONLY FOR double copy an scratch) |
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| 169 | typeset -r R_BUF=${SCRATCHDIR}/IGCM_OUT |
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[222] | 170 | |
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| 171 | #==================================================== |
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| 172 | #- RUN_DIR_PATH : Temporary working directory (=> TMP) |
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[648] | 173 | if ( [ ! X${LSB_QUEUE} = Xmono ] && [ ! X${LSB_QUEUE} = Xmonoext ] ) ; then |
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[544] | 174 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/RUN_DIR/${LSB_JOBID}} |
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[459] | 175 | else |
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[544] | 176 | typeset -r RUN_DIR_PATH=${RUN_DIR_PATH:=${SCRATCHDIR}/TMPDIR_IGCM/${LSB_JOBID}} |
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[459] | 177 | fi |
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[222] | 178 | |
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| 179 | #==================================================== |
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| 180 | #- HOST_MPIRUN_COMMAND |
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| 181 | typeset -r HOST_MPIRUN_COMMAND=${HOST_MPIRUN_COMMAND:="time mpirun"} |
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| 182 | |
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| 183 | #==================================================== |
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| 184 | #- Max number of arguments passed to nco operator or demigration command |
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| 185 | UNIX_MAX_LIMIT=360 |
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| 186 | |
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[616] | 187 | #==================================================== |
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| 188 | #- set PackDefault true on titane |
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| 189 | PackDefault=true |
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| 190 | |
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[664] | 191 | #==================================================== |
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| 192 | #- Number of core per node (max number of OpenMP task) |
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[616] | 193 | NUM_COREPERNODE=8 |
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[623] | 194 | |
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[616] | 195 | #==================================================== |
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| 196 | #- Default number of MPI task for IPSL coupled model |
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| 197 | #- required for backward compatibility |
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| 198 | #- |
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| 199 | DEFAULT_NUM_PROC_OCE=5 |
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| 200 | DEFAULT_NUM_PROC_CPL=1 |
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[637] | 201 | (( DEFAULT_NUM_PROC_ATM = BATCH_NUM_PROC_TOT - DEFAULT_NUM_PROC_OCE - DEFAULT_NUM_PROC_CPL )) |
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| 202 | DEFAULT_NUM_PROC_TOTAL=${BATCH_NUM_PROC_TOT} |
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[616] | 203 | |
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[725] | 204 | #D-#================================================== |
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| 205 | #D-function IGCM_sys_ChangeArchive |
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| 206 | #D-* Purpose: if SpaceName=TEST everything is stored on SCRATCHDIR |
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| 207 | #D-* Examples: |
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| 208 | #D- |
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| 209 | function IGCM_sys_ChangeArchive { |
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| 210 | IGCM_debug_PushStack "IGCM_sys_ChangeArchive" |
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[637] | 211 | |
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[743] | 212 | R_OUT=${SCRATCHDIR}/IGCM_OUT |
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| 213 | R_FIG=${SCRATCHDIR}/IGCM_OUT |
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[725] | 214 | |
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| 215 | IGCM_debug_Print 1 "R_OUT has been redefined = ${R_OUT}" |
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| 216 | IGCM_debug_Print 1 "R_FIG has been redefined = ${R_FIG}" |
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| 217 | |
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| 218 | IGCM_debug_PopStack "IGCM_sys_ChangeArchive" |
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| 219 | } |
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| 220 | |
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[222] | 221 | #D-#================================================== |
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| 222 | #D-function IGCM_sys_RshMaster |
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[531] | 223 | #D-* Purpose: Connection to frontend machine. |
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[222] | 224 | #D-* Examples: |
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| 225 | #D- |
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| 226 | function IGCM_sys_RshMaster { |
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[544] | 227 | IGCM_debug_PushStack "IGCM_sys_RshMaster" $@ |
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| 228 | /bin/ksh <<-EOF |
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[222] | 229 | export libIGCM=${libIGCM} |
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| 230 | export DEBUG_debug=${DEBUG_debug} |
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| 231 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 232 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 233 | ${@} |
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| 234 | EOF |
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[544] | 235 | if [ $? -gt 0 ] ; then |
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| 236 | echo "IGCM_sys_RshMaster : erreur." |
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| 237 | IGCM_debug_Exit "IGCM_sys_RshMaster" |
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| 238 | fi |
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| 239 | IGCM_debug_PopStack "IGCM_sys_RshMaster" |
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[222] | 240 | } |
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| 241 | |
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| 242 | #D-#================================================== |
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| 243 | #D-function IGCM_sys_RshArchive |
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| 244 | #D-* Purpose: Archive rsh command |
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| 245 | #D-* Examples: |
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| 246 | #D- |
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| 247 | function IGCM_sys_RshArchive { |
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[544] | 248 | IGCM_debug_PushStack "IGCM_sys_RshArchive" $@ |
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| 249 | /bin/ksh <<-EOF |
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[222] | 250 | ${@} |
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| 251 | EOF |
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[544] | 252 | if [ $? -gt 0 ] ; then |
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| 253 | echo "IGCM_sys_RshArchive : erreur." |
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| 254 | IGCM_debug_Exit "IGCM_sys_RshArchive" |
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| 255 | fi |
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| 256 | IGCM_debug_PopStack "IGCM_sys_RshArchive" |
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[222] | 257 | } |
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| 258 | |
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| 259 | #D-#================================================== |
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| 260 | #D-function IGCM_sys_RshPost |
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| 261 | #D-* Purpose: Post-process rsh command |
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| 262 | #D-* Examples: |
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| 263 | #D- |
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| 264 | function IGCM_sys_RshPost { |
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[544] | 265 | IGCM_debug_PushStack "IGCM_sys_RshPost" $@ |
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| 266 | if ( $DEBUG_sys ) ; then |
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| 267 | echo "IGCM_sys_RshPost :" $@ |
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| 268 | fi |
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[324] | 269 | |
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[544] | 270 | #echo cat tmp_IGCM_sys_RshPost_$$ INITIAL |
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| 271 | #cat tmp_IGCM_sys_RshPost_$$ |
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| 272 | # keep standard input (stdin) for the loop onto temporary file |
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| 273 | cat >tmp_IGCM_sys_RshPost_$$ |
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[222] | 274 | |
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[544] | 275 | # ============ FRONTEND START ============ # |
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[451] | 276 | |
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[544] | 277 | /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 278 | if [ $? -gt 0 ] ; then |
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| 279 | echo "IGCM_sys_RshPost : erreur." |
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| 280 | IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 281 | fi |
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| 282 | # delete temporary file |
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| 283 | \rm tmp_IGCM_sys_RshPost_$$ |
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[451] | 284 | |
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[544] | 285 | # ============ FRONTEND END ============ # |
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| 286 | |
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| 287 | # ============ CESIUM START ============ # |
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| 288 | # typeset NB_ESSAI DELAI status i |
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| 289 | # if [ "X$( grep rebuild_from tmp_IGCM_sys_RshPost_$$ )" != "X" ] ; then |
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| 290 | # #little hack so that rebuild submission is done on titane not an cesium |
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[623] | 291 | # |
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[544] | 292 | # libIGCM_POST_sed=$( echo $libIGCM_POST | sed 's/\//\\\//g' ) |
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| 293 | # POST_DIR_sed=$( echo ${POST_DIR} | sed 's/\//\\\//g' ) |
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| 294 | # sed "s/IGCM_sys_QsubPost/IGCM_sys_Qsub/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 295 | # sed "s/ rebuild_fromWorkdir/ ${libIGCM_POST_sed}\/rebuild_fromWorkdir.job/g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 296 | # sed "s/ rebuild_fromArchive/ ${libIGCM_POST_sed}\/rebuild_fromArchive.job/g" tmp_IGCM_sys_RshPost_$$ > tmp.txt |
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| 297 | # sed "s/Script_Post_Output=/Script_Output=${POST_DIR_sed}\//g" tmp.txt > tmp_IGCM_sys_RshPost_$$ |
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| 298 | # \mv tmp.txt tmp_IGCM_sys_RshPost_$$ |
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[623] | 299 | # |
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[544] | 300 | # echo cat tmp_IGCM_sys_RshPost_$$ AFTER |
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| 301 | # cat tmp_IGCM_sys_RshPost_$$ |
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| 302 | # |
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| 303 | # /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 304 | # if [ $? -gt 0 ] ; then |
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| 305 | # echo "IGCM_sys_RshPost : erreur." |
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| 306 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 307 | # fi |
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| 308 | # # delete temporary file |
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| 309 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 310 | # |
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| 311 | # else |
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| 312 | # # number of tentative |
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| 313 | # NB_ESSAI=10 |
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| 314 | # # time delay between tentative |
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| 315 | # DELAI=10 |
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| 316 | # i=0 |
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| 317 | # while [ $i -ne $NB_ESSAI ] ; do |
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| 318 | # ssh -t titane996 ssh cesium /bin/ksh <tmp_IGCM_sys_RshPost_$$ |
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| 319 | # status=$? |
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| 320 | # if [ ${status} -ne 0 ]; |
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| 321 | # then |
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| 322 | # sleep $DELAI |
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| 323 | # else |
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| 324 | # break |
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| 325 | # fi |
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| 326 | # let i=$i+1 |
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| 327 | # done |
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| 328 | # # delete temporary file |
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| 329 | # \rm tmp_IGCM_sys_RshPost_$$ |
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| 330 | # |
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| 331 | # if [ ${status} -gt 0 ] ; then |
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| 332 | # echo "IGCM_sys_RshPost : erreur." |
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| 333 | # IGCM_debug_Exit "IGCM_sys_RshPost" |
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| 334 | # fi |
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| 335 | # fi |
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| 336 | |
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| 337 | # ============ CESIUM END ============ # |
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| 338 | |
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| 339 | IGCM_debug_PopStack "IGCM_sys_RshPost" |
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[222] | 340 | } |
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| 341 | |
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| 342 | #D-#================================================== |
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| 343 | #D-function IGCM_sys_SendMail |
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| 344 | #D-* Purpose: Send mail when simulation is over |
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| 345 | #D-* Examples: |
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| 346 | #D- |
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| 347 | function IGCM_sys_SendMail { |
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[544] | 348 | IGCM_debug_PushStack "IGCM_sys_SendMail" $@ |
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| 349 | if ( $DEBUG_sys ) ; then |
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| 350 | echo "IGCM_sys_SendMail :" $@ |
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| 351 | fi |
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[222] | 352 | |
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[544] | 353 | if ( ${ExitFlag} ) ; then |
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| 354 | status=failed |
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| 355 | else |
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| 356 | status=completed |
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| 357 | fi |
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[452] | 358 | |
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[719] | 359 | cat << END_MAIL > job_end.mail |
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[222] | 360 | Dear ${LOGIN}, |
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| 361 | |
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[452] | 362 | Simulation ${config_UserChoices_JobName} is ${status} on supercomputer `hostname`. |
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[222] | 363 | Job started : ${DateBegin} |
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| 364 | Job ended : ${DateEnd} |
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[434] | 365 | Output files are available in ${R_SAVE} |
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[616] | 366 | Files to be rebuild are temporarily available in ${REBUILD_DIR} |
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| 367 | Pre-packed files are temporarily available in ${R_BUFR} |
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[452] | 368 | Script files, Script Outputs and Debug files (if necessary) are available in ${SUBMIT_DIR} |
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[222] | 369 | END_MAIL |
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| 370 | |
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| 371 | if [ ! -z ${config_UserChoices_MailName} ] ; then |
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[623] | 372 | mail -s "${config_UserChoices_JobName} ${status}" ${config_UserChoices_MailName} < job_end.mail |
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[222] | 373 | elif [ -f ~/.forward ] ; then |
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[623] | 374 | mail -s "${config_UserChoices_JobName} ${status}" $( cat ~/.forward ) < job_end.mail |
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[222] | 375 | fi |
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| 376 | sleep 10 |
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| 377 | rm -f job_end.mail |
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| 378 | |
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[544] | 379 | if [ $? -gt 0 ] ; then |
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| 380 | echo "IGCM_sys_SendMail : erreur." |
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| 381 | IGCM_debug_Exit "IGCM_sys_SendMail" |
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| 382 | fi |
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| 383 | IGCM_debug_PopStack "IGCM_sys_SendMail" |
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[222] | 384 | } |
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| 385 | |
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| 386 | #D-#================================================== |
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| 387 | #D-function IGCM_sys_Mkdir |
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| 388 | #D-* Purpose: Master locale mkdir command |
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| 389 | #D-* Examples: |
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| 390 | #D- |
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| 391 | function IGCM_sys_Mkdir { |
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[544] | 392 | IGCM_debug_PushStack "IGCM_sys_Mkdir" $@ |
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| 393 | if ( $DEBUG_sys ) ; then |
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| 394 | echo "IGCM_sys_Mkdir :" $@ |
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| 395 | fi |
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| 396 | if [ ! -d ${1} ]; then |
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| 397 | \mkdir -p $1 |
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| 398 | if [ $? -gt 0 ] ; then |
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| 399 | echo "IGCM_sys_Mkdir : erreur." |
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| 400 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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[222] | 401 | fi |
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[544] | 402 | fi |
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| 403 | # vérification : |
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| 404 | if [ ! -d ${1} ] ; then |
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| 405 | echo "IGCM_sys_Mkdir : erreur." |
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| 406 | IGCM_debug_Exit "IGCM_sys_Mkdir" |
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| 407 | fi |
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| 408 | IGCM_debug_PopStack "IGCM_sys_Mkdir" |
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[222] | 409 | } |
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| 410 | |
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| 411 | #D-#================================================== |
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| 412 | #D-function IGCM_sys_MkdirArchive |
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| 413 | #D-* Purpose: Mkdir on Archive |
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| 414 | #D-* Examples: |
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| 415 | #D- |
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| 416 | function IGCM_sys_MkdirArchive { |
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[544] | 417 | IGCM_debug_PushStack "IGCM_sys_MkdirArchive" $@ |
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| 418 | if ( $DEBUG_sys ) ; then |
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| 419 | echo "IGCM_sys_MkdirArchive :" $@ |
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| 420 | fi |
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| 421 | #- creation de repertoire sur le serveur fichier |
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[623] | 422 | if [ ! -d ${1} ]; then |
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[544] | 423 | \mkdir -p $1 |
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| 424 | if [ $? -gt 0 ] ; then |
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| 425 | echo "IGCM_sys_MkdirArchive : erreur." |
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| 426 | IGCM_debug_Exit "IGCM_sys_MkdirArchive" |
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[222] | 427 | fi |
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[544] | 428 | fi |
---|
| 429 | IGCM_debug_PopStack "IGCM_sys_MkdirArchive" |
---|
[222] | 430 | } |
---|
| 431 | |
---|
| 432 | #D-#================================================== |
---|
| 433 | #D-function IGCM_sys_MkdirWork |
---|
| 434 | #D-* Purpose: Mkdir on Work |
---|
| 435 | #D-* Examples: |
---|
| 436 | #D- |
---|
| 437 | function IGCM_sys_MkdirWork { |
---|
[544] | 438 | IGCM_debug_PushStack "IGCM_sys_MkdirWork" $@ |
---|
| 439 | if ( $DEBUG_sys ) ; then |
---|
| 440 | echo "IGCM_sys_MkdirWork :" $@ |
---|
| 441 | fi |
---|
| 442 | #- creation de repertoire sur le serveur fichier |
---|
[623] | 443 | if [ ! -d ${1} ]; then |
---|
[544] | 444 | \mkdir -p $1 |
---|
| 445 | if [ $? -gt 0 ] ; then |
---|
| 446 | echo "IGCM_sys_MkdirWork : erreur." |
---|
| 447 | IGCM_debug_Exit "IGCM_sys_MkdirWork" |
---|
[222] | 448 | fi |
---|
[544] | 449 | fi |
---|
| 450 | IGCM_debug_PopStack "IGCM_sys_MkdirWork" |
---|
[222] | 451 | } |
---|
| 452 | |
---|
| 453 | #D-#================================================== |
---|
| 454 | #D-function IGCM_sys_Cd |
---|
| 455 | #D-* Purpose: master cd command |
---|
| 456 | #D-* Examples: |
---|
| 457 | #D- |
---|
| 458 | function IGCM_sys_Cd { |
---|
[544] | 459 | IGCM_debug_PushStack "IGCM_sys_Cd" $@ |
---|
| 460 | if ( $DEBUG_sys ) ; then |
---|
| 461 | echo "IGCM_sys_Cd :" $@ |
---|
| 462 | fi |
---|
| 463 | \cd $1 |
---|
| 464 | if [ $? -gt 0 ] ; then |
---|
| 465 | echo "IGCM_sys_Cd : erreur." |
---|
| 466 | IGCM_debug_Exit "IGCM_sys_Cd" |
---|
| 467 | fi |
---|
| 468 | IGCM_debug_PopStack "IGCM_sys_Cd" |
---|
[222] | 469 | } |
---|
| 470 | |
---|
| 471 | #D-#================================================== |
---|
| 472 | #D-function IGCM_sys_Chmod |
---|
| 473 | #D-* Purpose: Chmod |
---|
| 474 | #D-* Examples: |
---|
| 475 | #D- |
---|
| 476 | function IGCM_sys_Chmod { |
---|
[544] | 477 | IGCM_debug_PushStack "IGCM_sys_Chmod" -- $@ |
---|
| 478 | if ( $DEBUG_sys ) ; then |
---|
| 479 | echo "IGCM_sys_Chmod :" $@ |
---|
| 480 | fi |
---|
| 481 | if [ $DRYRUN -le 1 ]; then |
---|
| 482 | \chmod $@ |
---|
| 483 | if [ $? -gt 0 ] ; then |
---|
| 484 | echo "IGCM_sys_Chmod : erreur." |
---|
| 485 | IGCM_debug_Exit "IGCM_sys_Chmod" |
---|
[222] | 486 | fi |
---|
[544] | 487 | else |
---|
| 488 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 489 | fi |
---|
| 490 | IGCM_debug_PopStack "IGCM_sys_Chmod" |
---|
[222] | 491 | } |
---|
| 492 | |
---|
| 493 | #D-#================================================== |
---|
| 494 | #D-function IGCM_sys_FileSize |
---|
| 495 | #D-* Purpose: Filesize |
---|
| 496 | #D-* Examples: |
---|
| 497 | #D- |
---|
| 498 | function IGCM_sys_FileSize { |
---|
[544] | 499 | IGCM_debug_PushStack "IGCM_sys_FileSize" $@ |
---|
[222] | 500 | |
---|
[544] | 501 | typeset sizeF |
---|
| 502 | set +A sizeF -- $( ls -la ${1} ) |
---|
| 503 | if [ $? -gt 0 ] ; then |
---|
| 504 | IGCM_debug_Exit "IGCM_sys_FileSize" |
---|
| 505 | fi |
---|
| 506 | eval ${2}=${sizeF[4]} |
---|
[222] | 507 | |
---|
[544] | 508 | IGCM_debug_PopStack "IGCM_sys_FileSize" |
---|
[222] | 509 | } |
---|
| 510 | |
---|
| 511 | #D-#================================================== |
---|
| 512 | #D-function IGCM_sys_TestDir |
---|
| 513 | #D-* Purpose: Test Directory that must exists |
---|
| 514 | #D-* Examples: |
---|
| 515 | #D- |
---|
| 516 | function IGCM_sys_TestDir { |
---|
[544] | 517 | IGCM_debug_PushStack "IGCM_sys_TestDir" $@ |
---|
| 518 | if ( $DEBUG_sys ) ; then |
---|
| 519 | echo "IGCM_sys_TestDir :" $@ |
---|
| 520 | fi |
---|
| 521 | typeset ExistFlag |
---|
| 522 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 523 | IGCM_debug_PopStack "IGCM_sys_TestDir" |
---|
[222] | 524 | |
---|
[544] | 525 | return ${ExistFlag} |
---|
[222] | 526 | } |
---|
| 527 | |
---|
| 528 | #D-#================================================== |
---|
| 529 | #D-function IGCM_sys_TestDirArchive |
---|
| 530 | #D-* Purpose: Test Directory that must exists on Archive |
---|
| 531 | #D-* Examples: |
---|
| 532 | #D- |
---|
| 533 | function IGCM_sys_TestDirArchive { |
---|
[544] | 534 | IGCM_debug_PushStack "IGCM_sys_TestDirArchive" $@ |
---|
| 535 | if ( $DEBUG_sys ) ; then |
---|
| 536 | echo "IGCM_sys_TestDirArchive :" $@ |
---|
| 537 | fi |
---|
| 538 | typeset ExistFlag |
---|
| 539 | ExistFlag=$( [ -d $1 ] && echo 0 || echo 1 ) |
---|
| 540 | IGCM_debug_PopStack "IGCM_sys_TestDirArchive" |
---|
[222] | 541 | |
---|
[544] | 542 | return ${ExistFlag} |
---|
[222] | 543 | } |
---|
| 544 | |
---|
| 545 | #D-#================================================== |
---|
[548] | 546 | #D-function IGCM_sys_IsFileArchived |
---|
| 547 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 548 | #D-* Examples: |
---|
| 549 | #D- |
---|
| 550 | function IGCM_sys_IsFileArchived { |
---|
| 551 | IGCM_debug_PushStack "IGCM_sys_IsFileArchived" $@ |
---|
| 552 | if ( $DEBUG_sys ) ; then |
---|
| 553 | echo "IGCM_sys_IsFileArchived :" $@ |
---|
| 554 | fi |
---|
| 555 | typeset IsArchivedFlag |
---|
[618] | 556 | IsArchivedFlag=$( [ X$( echo $1 | grep ^\/ccc\/store ) != X ] && echo 0 || echo 1 ) |
---|
[548] | 557 | IGCM_debug_PopStack "IGCM_sys_IsFileArchived" |
---|
| 558 | |
---|
| 559 | return ${IsArchivedFlag} |
---|
| 560 | } |
---|
| 561 | |
---|
| 562 | #D-#================================================== |
---|
[222] | 563 | #D-function IGCM_sys_TestFileArchive |
---|
| 564 | #D-* Purpose: Test file that must NOT EXISTS on Archive |
---|
| 565 | #D-* Examples: |
---|
| 566 | #D- |
---|
| 567 | function IGCM_sys_TestFileArchive { |
---|
[544] | 568 | IGCM_debug_PushStack "IGCM_sys_TestFileArchive" $@ |
---|
| 569 | typeset ExistFlag |
---|
| 570 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 571 | IGCM_debug_PopStack "IGCM_sys_TestFileArchive" |
---|
[222] | 572 | |
---|
[544] | 573 | return ${ExistFlag} |
---|
[222] | 574 | } |
---|
| 575 | |
---|
| 576 | #D-#================================================== |
---|
[544] | 577 | #D-function IGCM_sys_TestFileBuffer |
---|
| 578 | #D-* Purpose: Test file that must NOT EXISTS on Buffer |
---|
| 579 | #D-* Examples: |
---|
| 580 | #D- |
---|
| 581 | function IGCM_sys_TestFileBuffer { |
---|
| 582 | IGCM_debug_PushStack "IGCM_sys_TestFileBuffer" $@ |
---|
| 583 | typeset ExistFlag |
---|
| 584 | ExistFlag=$( [ -f $1 ] && echo 0 || echo 1 ) |
---|
| 585 | IGCM_debug_PopStack "IGCM_sys_TestFileBuffer" |
---|
| 586 | |
---|
| 587 | return ${ExistFlag} |
---|
| 588 | } |
---|
| 589 | |
---|
| 590 | #D-#================================================== |
---|
[222] | 591 | #D-function IGCM_sys_CountFileArchive |
---|
| 592 | #D-* Purpose: Count files on Archive filesystem |
---|
| 593 | #D-* Examples: |
---|
| 594 | #D- |
---|
| 595 | function IGCM_sys_CountFileArchive { |
---|
[544] | 596 | IGCM_debug_PushStack "IGCM_sys_CountFileArchive" $@ |
---|
| 597 | ls ${@} 2>/dev/null | wc -l |
---|
| 598 | if [ $? -gt 0 ] ; then |
---|
| 599 | echo "IGCM_sys_CountFileArchive : erreur." |
---|
| 600 | fi |
---|
| 601 | IGCM_debug_PopStack "IGCM_sys_CountFileArchive" |
---|
[222] | 602 | } |
---|
| 603 | |
---|
| 604 | #D-#================================================== |
---|
[544] | 605 | #D-function IGCM_sys_CountFileBuffer |
---|
| 606 | #D-* Purpose: Count files on Scratch filesystem |
---|
| 607 | #D-* Examples: |
---|
| 608 | #D- |
---|
| 609 | function IGCM_sys_CountFileBuffer { |
---|
| 610 | IGCM_debug_PushStack "IGCM_sys_CountFileBuffer" $@ |
---|
| 611 | ls ${@} 2>/dev/null | wc -l |
---|
| 612 | if [ $? -gt 0 ] ; then |
---|
| 613 | echo "IGCM_sys_CountFileBuffer : erreur." |
---|
| 614 | fi |
---|
| 615 | IGCM_debug_PopStack "IGCM_sys_CountFileBuffer" |
---|
| 616 | } |
---|
| 617 | |
---|
| 618 | #D-#================================================== |
---|
[222] | 619 | #D-function IGCM_sys_Tree |
---|
| 620 | #D-* Purpose: Tree directories with files on ${ARCHIVE} |
---|
| 621 | #D-* Examples: IGCM_sys_Tree ${R_IN} ${R_OUT} |
---|
| 622 | #D- |
---|
| 623 | function IGCM_sys_Tree { |
---|
[544] | 624 | IGCM_debug_PushStack "IGCM_sys_Tree" $@ |
---|
| 625 | if ( $DEBUG_sys ) ; then |
---|
| 626 | echo "IGCM_sys_Tree :" $@ |
---|
| 627 | fi |
---|
[222] | 628 | |
---|
[544] | 629 | \ls -lR ${@} |
---|
[222] | 630 | |
---|
[544] | 631 | IGCM_debug_PopStack "IGCM_sys_Tree" |
---|
[222] | 632 | } |
---|
| 633 | |
---|
| 634 | #D-#================================================== |
---|
| 635 | #D-function IGCM_sys_Tar |
---|
[544] | 636 | #D-* Purpose: master tar command |
---|
[222] | 637 | #D-* Examples: |
---|
| 638 | #D- |
---|
| 639 | function IGCM_sys_Tar { |
---|
[544] | 640 | IGCM_debug_PushStack "IGCM_sys_Tar" $@ |
---|
| 641 | if ( $DEBUG_sys ) ; then |
---|
| 642 | echo "IGCM_sys_Tar :" $@ |
---|
| 643 | fi |
---|
| 644 | \tar cf $@ |
---|
| 645 | if [ $? -gt 0 ] ; then |
---|
| 646 | echo "IGCM_sys_Tar : erreur." |
---|
| 647 | IGCM_debug_Exit "IGCM_sys_Tar" |
---|
| 648 | fi |
---|
| 649 | IGCM_debug_PopStack "IGCM_sys_Tar" |
---|
[222] | 650 | } |
---|
| 651 | |
---|
| 652 | #D-#================================================== |
---|
| 653 | #D-function IGCM_sys_UnTar |
---|
| 654 | #D-* Purpose: master un-tar command |
---|
| 655 | #D-* Examples: |
---|
| 656 | #D- |
---|
| 657 | function IGCM_sys_UnTar { |
---|
[544] | 658 | IGCM_debug_PushStack "IGCM_sys_UnTar" $@ |
---|
| 659 | if ( $DEBUG_sys ) ; then |
---|
| 660 | echo "IGCM_sys_UnTar :" $@ |
---|
| 661 | fi |
---|
| 662 | \tar xvf $1 |
---|
| 663 | if [ $? -gt 0 ] ; then |
---|
| 664 | echo "IGCM_sys_UnTar : erreur." |
---|
| 665 | IGCM_debug_Exit "IGCM_sys_UnTar" |
---|
| 666 | fi |
---|
| 667 | IGCM_debug_PopStack "IGCM_sys_UnTar" |
---|
[222] | 668 | } |
---|
| 669 | |
---|
| 670 | #D-#================================================== |
---|
| 671 | #D-function IGCM_sys_Qsub |
---|
| 672 | #D-* Purpose: Qsub new job |
---|
| 673 | #D-* Examples: |
---|
| 674 | #D- |
---|
| 675 | function IGCM_sys_Qsub { |
---|
[544] | 676 | IGCM_debug_PushStack "IGCM_sys_Qsub" $@ |
---|
| 677 | if ( $DEBUG_sys ) ; then |
---|
| 678 | echo "IGCM_sys_Qsub :" $@ |
---|
| 679 | fi |
---|
| 680 | typeset options |
---|
| 681 | if [ ${config_UserChoices_JobName}.${CumulPeriod} = "." ] ; then |
---|
| 682 | options=" -o ${Script_Output} -e ${Script_Output}" |
---|
| 683 | else |
---|
| 684 | options=" -o ${Script_Output} -e ${Script_Output} -r ${config_UserChoices_JobName}.${CumulPeriod}" |
---|
| 685 | fi |
---|
[467] | 686 | |
---|
[544] | 687 | /usr/local/bin/ccc_msub ${options} < $1 |
---|
| 688 | if [ $? -gt 0 ] ; then |
---|
| 689 | echo "IGCM_sys_Qsub : erreur ${options} $1" |
---|
| 690 | IGCM_debug_Exit "IGCM_sys_Qsub" |
---|
| 691 | fi |
---|
| 692 | IGCM_debug_PopStack "IGCM_sys_Qsub" |
---|
[222] | 693 | } |
---|
| 694 | |
---|
| 695 | #D-#================================================== |
---|
| 696 | #D-function IGCM_sys_QsubPost |
---|
| 697 | #D-* Purpose: Qsub new job on scalaire |
---|
| 698 | #D-* Examples: |
---|
| 699 | #D- |
---|
| 700 | function IGCM_sys_QsubPost { |
---|
[544] | 701 | IGCM_debug_PushStack "IGCM_sys_QsubPost" $@ |
---|
| 702 | if ( $DEBUG_sys ) ; then |
---|
| 703 | echo "IGCM_sys_QsubPost :" $@ |
---|
| 704 | fi |
---|
| 705 | |
---|
| 706 | # Need to export listVarEnv for cesium |
---|
| 707 | # NO Need to export listVarEnv for titane |
---|
| 708 | # ============ FRONTEND START ============ # |
---|
| 709 | |
---|
| 710 | /usr/local/bin/ccc_msub -p ${BRIDGE_MSUB_PROJECT} -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.out ${libIGCM_POST}/$1.job |
---|
| 711 | |
---|
| 712 | # ============ FRONTEND END ============ # |
---|
| 713 | |
---|
| 714 | # ============ CESIUM START ============ # |
---|
| 715 | # typeset NB_ESSAI DELAI status i |
---|
| 716 | # # number of tentative |
---|
| 717 | # NB_ESSAI=10 |
---|
| 718 | # # time delay between tentative |
---|
| 719 | # DELAI=10 |
---|
| 720 | # (( i = 0 )) |
---|
| 721 | # while [ $i -lt $NB_ESSAI ] ; do |
---|
| 722 | # /usr/local/bin/ccc_msub -o ${POST_DIR}/${Script_Post_Output}.out -e ${POST_DIR}/${Script_Post_Output}.e.out -E "-v ${listVarEnv}" ${libIGCM_POST}/$1.job |
---|
| 723 | # status=$? |
---|
| 724 | # if [ ${status} -gt 0 ]; then |
---|
| 725 | # sleep $DELAI |
---|
| 726 | # else |
---|
| 727 | # break |
---|
| 728 | # fi |
---|
| 729 | # (( i = i + 1 )) |
---|
[623] | 730 | # done |
---|
[544] | 731 | # ============ CESIUM END ============ # |
---|
| 732 | |
---|
| 733 | if [ $? -gt 0 ] ; then |
---|
| 734 | echo "IGCM_sys_QsubPost : erreur " $@ |
---|
| 735 | IGCM_debug_Exit "IGCM_sys_QsubPost" |
---|
| 736 | fi |
---|
| 737 | IGCM_debug_PopStack "IGCM_sys_QsubPost" |
---|
[222] | 738 | } |
---|
| 739 | |
---|
| 740 | #D-************************* |
---|
[623] | 741 | #D- File transfer functions |
---|
[222] | 742 | #D-************************* |
---|
| 743 | #D- |
---|
| 744 | |
---|
| 745 | #D-#================================================== |
---|
| 746 | #D-function IGCM_sys_Rsync_out |
---|
| 747 | #D-* Purpose: treat return val of rsync |
---|
| 748 | #D-* Examples: IGCM_sys_Rsync_out out_RET_rsync |
---|
| 749 | #D- Error values and explanations can depend on your system version. |
---|
| 750 | function IGCM_sys_Rsync_out { |
---|
[719] | 751 | status=$1 |
---|
| 752 | if [ ! $status ] ; then |
---|
[544] | 753 | echo "rsync error !" |
---|
| 754 | fi |
---|
[222] | 755 | |
---|
[544] | 756 | if [ $MYLANG = "fr" ]; then |
---|
[719] | 757 | case $status in |
---|
[544] | 758 | 0) return ;; |
---|
| 759 | 1) echo "Erreur de rsync ; RERR_SYNTAX : " |
---|
| 760 | echo "Erreur de syntaxe ou d'utilisation." |
---|
| 761 | return;; |
---|
| 762 | 2) echo "Erreur de rsync ; RERR_PROTOCOL : " |
---|
| 763 | echo "Incompatibilité de protocole." |
---|
| 764 | return;; |
---|
| 765 | 3) echo "Erreur de rsync ; RERR_FILESELECT 3" |
---|
| 766 | echo "Erreurs lors de la sélection des fichiers d'entrée sortie et" |
---|
| 767 | echo "répertoires" |
---|
| 768 | return;; |
---|
| 769 | 4) echo "Erreur de rsync ; RERR_UNSUPPORTED" |
---|
| 770 | echo "Action demandée non supportée : une tentative de manipulation de" |
---|
| 771 | echo "fichiers 64-bits sur une plate-forme qui ne les supporte pas a" |
---|
| 772 | echo "été faite ; ou une option qui est supportée par le client mais" |
---|
| 773 | echo "pas par le serveur a été spécifiée." |
---|
| 774 | return;; |
---|
| 775 | 10) echo "Erreur de rsync ; RERR_SOCKETIO" |
---|
| 776 | echo "Erreur dans le socket d'entrée sortie" |
---|
| 777 | return;; |
---|
| 778 | 11) echo "Erreur de rsync ; RERR_FILEIO" |
---|
| 779 | echo "Erreur d'entrée sortie fichier" |
---|
| 780 | return;; |
---|
| 781 | 12) echo "Erreur de rsync ; RERR_STREAMIO" |
---|
| 782 | echo "Erreur dans flux de donnée du protocole rsync" |
---|
| 783 | return;; |
---|
| 784 | 13) echo "Erreur de rsync ; RERR_MESSAGEIO" |
---|
| 785 | echo "Erreur avec les diagnostics du programme" |
---|
| 786 | return;; |
---|
| 787 | 14) echo "Erreur de rsync ; RERR_IPC" |
---|
| 788 | echo "Erreur dans le code IPC" |
---|
| 789 | return;; |
---|
| 790 | 20) echo "Erreur de rsync ; RERR_SIGNAL" |
---|
| 791 | echo "SIGUSR1 ou SIGINT reçu" |
---|
| 792 | return;; |
---|
| 793 | 21) echo "Erreur de rsync ; RERR_WAITCHILD" |
---|
| 794 | echo "Une erreur retournée par waitpid()" |
---|
| 795 | return;; |
---|
| 796 | 22) echo "Erreur de rsync ; RERR_MALLOC" |
---|
| 797 | echo "Erreur lors de l'allocation des tampons de mémoire de coeur" |
---|
| 798 | return;; |
---|
| 799 | 23) echo "" |
---|
| 800 | echo "Erreur fichier inexistant" |
---|
| 801 | return;; |
---|
| 802 | 30) echo "Erreur de rsync ; RERR_TIMEOUT" |
---|
| 803 | echo "Temps d'attente écoulé dans l'envoi/réception de données" |
---|
| 804 | return;; |
---|
[719] | 805 | *) echo "Erreur de rsync : code de retour de rsync inconnu :" $status |
---|
[544] | 806 | return;; |
---|
| 807 | esac |
---|
| 808 | elif [ $MYLANG = "en" ] ; then |
---|
[719] | 809 | case $status in |
---|
[623] | 810 | 0) return;; |
---|
[544] | 811 | 1) echo "rsync error : Syntax or usage error " |
---|
| 812 | return;; |
---|
| 813 | 2) echo "rsync error : Protocol incompatibility " |
---|
| 814 | return;; |
---|
| 815 | 3) echo "rsync error : Errors selecting input/output files, dirs" |
---|
| 816 | return;; |
---|
| 817 | 4) echo "rsync error : Requested action not supported: an attempt" |
---|
| 818 | echo "was made to manipulate 64-bit files on a platform that cannot support" |
---|
| 819 | echo "them; or an option was specified that is supported by the client and" |
---|
| 820 | echo "not by the server." |
---|
| 821 | return;; |
---|
| 822 | 5) echo "rsync error : Error starting client-server protocol" |
---|
| 823 | return;; |
---|
| 824 | 10) echo "rsync error : Error in socket I/O " |
---|
| 825 | return;; |
---|
| 826 | 11) echo "rsync error : Error in file I/O " |
---|
| 827 | return;; |
---|
| 828 | 12) echo "rsync error : Error in rsync protocol data stream " |
---|
| 829 | return;; |
---|
| 830 | 13) echo "rsync error : Errors with program diagnostics " |
---|
| 831 | return;; |
---|
| 832 | 14) echo "rsync error : Error in IPC code " |
---|
| 833 | return;; |
---|
| 834 | 20) echo "rsync error : Received SIGUSR1 or SIGINT " |
---|
| 835 | return;; |
---|
| 836 | 21) echo "rsync error : Some error returned by waitpid() " |
---|
| 837 | return;; |
---|
| 838 | 22) echo "rsync error : Error allocating core memory buffers " |
---|
| 839 | return;; |
---|
| 840 | 23) echo "rsync error : Partial transfer due to error" |
---|
| 841 | return;; |
---|
| 842 | 24) echo "rsync error : Partial transfer due to vanished source files" |
---|
| 843 | return;; |
---|
| 844 | 30) echo "rsync error : Timeout in data send/receive " |
---|
| 845 | return;; |
---|
[719] | 846 | *) echo "rsync error : return code of rsync unknown :" $status |
---|
[544] | 847 | return;; |
---|
| 848 | esac |
---|
| 849 | else |
---|
| 850 | echo "unknown language $MYLANG." |
---|
| 851 | return |
---|
| 852 | fi |
---|
[222] | 853 | } |
---|
| 854 | |
---|
| 855 | #D-#================================================== |
---|
| 856 | #D-function IGCM_sys_Miror_libIGCM |
---|
| 857 | #D-* Purpose: Mirror libIGCM PATH and lib to cesium |
---|
| 858 | #D-* Examples: |
---|
| 859 | #D- |
---|
| 860 | function IGCM_sys_Mirror_libIGCM { |
---|
[544] | 861 | IGCM_debug_PushStack "IGCM_sys_Mirror_libIGCM" |
---|
| 862 | if ( $DEBUG_sys ) ; then |
---|
| 863 | echo "IGCM_sys_Mirror_libIGCM" |
---|
| 864 | fi |
---|
[222] | 865 | |
---|
[717] | 866 | typeset status DEST |
---|
[222] | 867 | |
---|
[544] | 868 | mkdir -p ${HOME}/MIRROR/${PATHlibIGCM} |
---|
[222] | 869 | |
---|
[544] | 870 | echo ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} > out_rsync 2>&1 |
---|
| 871 | ${RSYNC} ${RSYNC_opt} ${libIGCM} ${HOME}/MIRROR/${PATHlibIGCM} >> out_rsync 2>&1 |
---|
[717] | 872 | status=$? |
---|
[222] | 873 | |
---|
[717] | 874 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 875 | echo "IGCM_sys_Mirror_libIGCM Warning : no libIGCM on cesium." |
---|
| 876 | cat out_rsync |
---|
| 877 | fi |
---|
| 878 | IGCM_debug_PopStack "IGCM_sys_Mirror_libIGCM" |
---|
[222] | 879 | } |
---|
| 880 | |
---|
| 881 | #D-#================================================== |
---|
| 882 | #D-function IGCM_sys_Cp |
---|
| 883 | #D-* Purpose: generic cp |
---|
| 884 | #D-* Examples: |
---|
| 885 | #D- |
---|
| 886 | function IGCM_sys_Cp { |
---|
[544] | 887 | IGCM_debug_PushStack "IGCM_sys_Cp" $@ |
---|
| 888 | if ( $DEBUG_sys ) ; then |
---|
| 889 | echo "IGCM_sys_Cp :" $@ |
---|
| 890 | fi |
---|
[222] | 891 | |
---|
[717] | 892 | typeset status |
---|
[222] | 893 | |
---|
[544] | 894 | echo cp $@ > out_rsync 2>&1 |
---|
| 895 | \cp $@ >> out_rsync 2>&1 |
---|
[717] | 896 | status=$? |
---|
[222] | 897 | |
---|
[717] | 898 | if [ ${status} -gt 0 ] ; then |
---|
| 899 | echo "IGCM_sys_Cp : error code ${status}" |
---|
[544] | 900 | cat out_rsync |
---|
| 901 | IGCM_debug_Exit "IGCM_sys_Cp" |
---|
| 902 | else |
---|
| 903 | \rm out_rsync |
---|
| 904 | fi |
---|
| 905 | IGCM_debug_PopStack "IGCM_sys_Cp" |
---|
[222] | 906 | } |
---|
| 907 | |
---|
| 908 | #D-#================================================== |
---|
| 909 | #D-function IGCM_sys_Rm |
---|
| 910 | #D-* Purpose: generic rm |
---|
| 911 | #D-* Examples: |
---|
| 912 | #D- |
---|
| 913 | function IGCM_sys_Rm { |
---|
[544] | 914 | IGCM_debug_PushStack "IGCM_sys_Rm" -- $@ |
---|
| 915 | if ( $DEBUG_sys ) ; then |
---|
| 916 | echo "IGCM_sys_Rm :" $@ |
---|
| 917 | fi |
---|
[222] | 918 | |
---|
[717] | 919 | typeset status |
---|
[222] | 920 | |
---|
[544] | 921 | echo rm $@ > out_rsync 2>&1 |
---|
| 922 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 923 | status=$? |
---|
[222] | 924 | |
---|
[717] | 925 | if [ ${status} -gt 0 ] ; then |
---|
| 926 | echo "IGCM_sys_Rm : error code ${status}" |
---|
[544] | 927 | cat out_rsync |
---|
| 928 | IGCM_debug_Exit "IGCM_sys_Rm" |
---|
| 929 | else |
---|
| 930 | \rm out_rsync |
---|
| 931 | fi |
---|
| 932 | IGCM_debug_PopStack "IGCM_sys_Rm" |
---|
[222] | 933 | } |
---|
| 934 | |
---|
| 935 | #D-#================================================== |
---|
[467] | 936 | #D-function IGCM_sys_RmRunDir |
---|
| 937 | #D-* Purpose: rm tmpdir (dummy function most of the time batch |
---|
| 938 | #D- scheduler will do the job) |
---|
| 939 | #D-* Examples: |
---|
| 940 | #D- |
---|
| 941 | function IGCM_sys_RmRunDir { |
---|
[544] | 942 | IGCM_debug_PushStack "IGCM_sys_RmRunDir" -- $@ |
---|
| 943 | if ( $DEBUG_sys ) ; then |
---|
| 944 | echo "IGCM_sys_RmRunDir :" $@ |
---|
| 945 | fi |
---|
[467] | 946 | |
---|
[717] | 947 | typeset status |
---|
[467] | 948 | |
---|
[544] | 949 | echo rm $@ > out_rsync 2>&1 |
---|
| 950 | \rm $@ >> out_rsync 2>&1 |
---|
[717] | 951 | status=$? |
---|
[467] | 952 | |
---|
[717] | 953 | if [ ${status} -gt 0 ] ; then |
---|
| 954 | echo "IGCM_sys_RmRunDir : error code ${status}" |
---|
[544] | 955 | cat out_rsync |
---|
| 956 | IGCM_debug_Exit "IGCM_sys_RmRunDir" |
---|
| 957 | else |
---|
| 958 | \rm out_rsync |
---|
| 959 | fi |
---|
| 960 | IGCM_debug_PopStack "IGCM_sys_RmRunDir" |
---|
[467] | 961 | } |
---|
| 962 | |
---|
| 963 | #D-#================================================== |
---|
[222] | 964 | #D-function IGCM_sys_Mv |
---|
| 965 | #D-* Purpose: generic move |
---|
| 966 | #D-* Examples: |
---|
| 967 | #D- |
---|
| 968 | function IGCM_sys_Mv { |
---|
[544] | 969 | IGCM_debug_PushStack "IGCM_sys_Mv" $@ |
---|
| 970 | if ( $DEBUG_sys ) ; then |
---|
| 971 | echo "IGCM_sys_Mv :" $@ |
---|
| 972 | fi |
---|
[222] | 973 | |
---|
[544] | 974 | if [ $DRYRUN = 0 ]; then |
---|
[222] | 975 | |
---|
[717] | 976 | typeset status |
---|
[623] | 977 | |
---|
[544] | 978 | echo mv $@ > out_rsync 2>&1 |
---|
| 979 | \mv $@ >> out_rsync 2>&1 |
---|
[717] | 980 | status=$? |
---|
[623] | 981 | |
---|
[717] | 982 | if [ ${status} -gt 0 ] ; then |
---|
| 983 | echo "IGCM_sys_Mv : error code ${status}" |
---|
[544] | 984 | cat out_rsync |
---|
| 985 | IGCM_debug_Exit "IGCM_sys_Mv" |
---|
[222] | 986 | else |
---|
[544] | 987 | \rm out_rsync |
---|
[222] | 988 | fi |
---|
[544] | 989 | else |
---|
| 990 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 991 | fi |
---|
[222] | 992 | |
---|
[544] | 993 | IGCM_debug_PopStack "IGCM_sys_Mv" |
---|
[222] | 994 | } |
---|
| 995 | |
---|
| 996 | #D-#================================================== |
---|
| 997 | #D-function IGCM_sys_Put_Dir |
---|
| 998 | #D-* Purpose: Copy a complete directory on $(ARCHIVE) |
---|
| 999 | #D-* Examples: |
---|
| 1000 | #D- |
---|
| 1001 | function IGCM_sys_Put_Dir { |
---|
[544] | 1002 | IGCM_debug_PushStack "IGCM_sys_Put_Dir" $@ |
---|
| 1003 | if ( $DEBUG_sys ) ; then |
---|
| 1004 | echo "IGCM_sys_Put_Dir :" $@ |
---|
| 1005 | fi |
---|
| 1006 | if [ $DRYRUN = 0 ]; then |
---|
| 1007 | if [ ! -d ${1} ] ; then |
---|
| 1008 | echo "WARNING : IGCM_sys_Put_Dir ${1} DOES NOT EXIST ." |
---|
| 1009 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
| 1010 | return |
---|
[222] | 1011 | fi |
---|
| 1012 | |
---|
[717] | 1013 | typeset status |
---|
[222] | 1014 | |
---|
[544] | 1015 | # Only if we use rsync |
---|
| 1016 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1017 | # |
---|
| 1018 | #USUAL WAY |
---|
| 1019 | \cp -r $1 $2 > out_rsync 2>&1 |
---|
[717] | 1020 | status=$? |
---|
[222] | 1021 | |
---|
[717] | 1022 | if [ ${status} -gt 0 ] ; then |
---|
| 1023 | echo "IGCM_sys_Put_Dir : error code ${status}" |
---|
[544] | 1024 | cat out_rsync |
---|
| 1025 | IGCM_debug_Exit "IGCM_sys_Put_Dir" |
---|
[222] | 1026 | else |
---|
[544] | 1027 | \rm out_rsync |
---|
[222] | 1028 | fi |
---|
[544] | 1029 | else |
---|
| 1030 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1031 | fi |
---|
| 1032 | IGCM_debug_PopStack "IGCM_sys_Put_Dir" |
---|
[222] | 1033 | } |
---|
| 1034 | |
---|
| 1035 | #D-#================================================== |
---|
| 1036 | #D-function IGCM_sys_Get_Dir |
---|
[544] | 1037 | #D-* Purpose: Copy a complete directory from ${ARCHIVE} |
---|
[222] | 1038 | #D-* Examples: |
---|
| 1039 | #D- |
---|
| 1040 | function IGCM_sys_Get_Dir { |
---|
[544] | 1041 | IGCM_debug_PushStack "IGCM_sys_Get_Dir" $@ |
---|
| 1042 | if ( $DEBUG_sys ) ; then |
---|
| 1043 | echo "IGCM_sys_Get_Dir :" $@ |
---|
| 1044 | fi |
---|
| 1045 | if [ $DRYRUN = 0 ]; then |
---|
| 1046 | # if [ ! -d ${1} ] ; then |
---|
| 1047 | # echo "WARNING : IGCM_sys_Get_Dir ${1} DOES NOT EXIST ." |
---|
| 1048 | # IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
| 1049 | # return |
---|
| 1050 | # fi |
---|
[222] | 1051 | |
---|
[717] | 1052 | typeset NB_ESSAI DELAI status i |
---|
| 1053 | # number of tentative |
---|
| 1054 | NB_ESSAI=3 |
---|
| 1055 | # time delay between tentative |
---|
| 1056 | DELAI=2 |
---|
[222] | 1057 | |
---|
[544] | 1058 | # Only if we use rsync |
---|
| 1059 | #IGCM_sys_TestDirArchive $( dirname $2 ) |
---|
| 1060 | # |
---|
| 1061 | # USUAL WAY |
---|
| 1062 | # add dmfind/dmget (to demigrate all offline files) : |
---|
[587] | 1063 | #dmfind $1 -state MIG -o -state OFL -o -state PAR | dmget |
---|
[713] | 1064 | ccc_hsm get -r $1 |
---|
[222] | 1065 | |
---|
[717] | 1066 | i=0 |
---|
| 1067 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1068 | \cp -ur $1 $2 >> out_rsync 2>&1 |
---|
| 1069 | status=$? |
---|
| 1070 | if [ ${status} -gt 0 ]; then |
---|
| 1071 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1072 | IGCM_debug_Print 2 "IGCM_sys_Get_Dir : sleep ${DELAI} seconds and try again." |
---|
| 1073 | sleep $DELAI |
---|
| 1074 | else |
---|
| 1075 | break |
---|
| 1076 | fi |
---|
| 1077 | (( i = i + 1 )) |
---|
| 1078 | done |
---|
| 1079 | |
---|
| 1080 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1081 | echo "IGCM_sys_Get_Dir : error." |
---|
| 1082 | cat out_rsync |
---|
| 1083 | IGCM_debug_Exit "IGCM_sys_Get_Dir" |
---|
[222] | 1084 | else |
---|
[544] | 1085 | \rm out_rsync |
---|
[222] | 1086 | fi |
---|
[544] | 1087 | else |
---|
| 1088 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1089 | fi |
---|
| 1090 | IGCM_debug_PopStack "IGCM_sys_Get_Dir" |
---|
[222] | 1091 | } |
---|
| 1092 | |
---|
| 1093 | #D-#================================================== |
---|
| 1094 | #D-function IGCM_sys_Get_Master |
---|
| 1095 | #D-* Purpose: Copy a complete directory from MASTER filesystem |
---|
| 1096 | #D-* Examples: |
---|
| 1097 | #D- |
---|
| 1098 | function IGCM_sys_Get_Master { |
---|
[544] | 1099 | IGCM_debug_PushStack "IGCM_sys_Get_Master" $@ |
---|
| 1100 | if ( $DEBUG_sys ) ; then |
---|
| 1101 | echo "IGCM_sys_Get_Master :" $@ |
---|
| 1102 | fi |
---|
| 1103 | if [ $DRYRUN = 0 ]; then |
---|
[640] | 1104 | if ( [ ! -d ${1} ] && [ ! -f ${1} ] ) ; then |
---|
[544] | 1105 | echo "WARNING : IGCM_sys_Get_Master ${1} DOES NOT EXIST ." |
---|
| 1106 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
| 1107 | return |
---|
[222] | 1108 | fi |
---|
| 1109 | |
---|
[717] | 1110 | typeset NB_ESSAI DELAI status i |
---|
| 1111 | # number of tentative |
---|
| 1112 | NB_ESSAI=3 |
---|
| 1113 | # time delay between tentative |
---|
| 1114 | DELAI=2 |
---|
[222] | 1115 | |
---|
[717] | 1116 | i=0 |
---|
| 1117 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1118 | \cp -urL $1 $2 > out_rsync 2>&1 |
---|
| 1119 | status=$? |
---|
| 1120 | if [ ${status} -gt 0 ]; then |
---|
| 1121 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1122 | IGCM_debug_Print 2 "IGCM_sys_Get_Master : sleep ${DELAI} seconds and try again." |
---|
| 1123 | sleep $DELAI |
---|
| 1124 | else |
---|
| 1125 | break |
---|
| 1126 | fi |
---|
| 1127 | (( i = i + 1 )) |
---|
| 1128 | done |
---|
[222] | 1129 | |
---|
[717] | 1130 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1131 | echo "IGCM_sys_Get_Master : error." |
---|
| 1132 | cat out_rsync |
---|
| 1133 | IGCM_debug_Exit "IGCM_sys_Get_Master" |
---|
[222] | 1134 | else |
---|
[544] | 1135 | \rm out_rsync |
---|
[222] | 1136 | fi |
---|
[544] | 1137 | else |
---|
| 1138 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1139 | fi |
---|
| 1140 | IGCM_debug_PopStack "IGCM_sys_Get_Master" |
---|
[222] | 1141 | } |
---|
| 1142 | |
---|
[689] | 1143 | #==================================================== |
---|
| 1144 | #- Call IGCM_sys_Mirror_libIGCM now ! |
---|
| 1145 | if ( $MirrorlibIGCM ) ; then |
---|
| 1146 | IGCM_sys_Mirror_libIGCM |
---|
| 1147 | fi |
---|
| 1148 | |
---|
[222] | 1149 | #D-#================================================== |
---|
| 1150 | #D-function IGCM_sys_Put_Rest |
---|
[544] | 1151 | #D-* Purpose: Put computied restarts on ${ARCHIVE}. |
---|
[222] | 1152 | #D- File and target directory must exist. |
---|
| 1153 | #D-* Examples: |
---|
| 1154 | #D- |
---|
| 1155 | function IGCM_sys_Put_Rest { |
---|
[544] | 1156 | IGCM_debug_PushStack "IGCM_sys_Put_Rest" $@ |
---|
| 1157 | if ( $DEBUG_sys ) ; then |
---|
| 1158 | echo "IGCM_sys_Put_Rest :" $@ |
---|
| 1159 | fi |
---|
| 1160 | if [ $DRYRUN = 0 ]; then |
---|
| 1161 | if [ ! -f ${1} ] ; then |
---|
| 1162 | echo "ERROR : IGCM_sys_Put_Rest ${1} DOES NOT EXIST ." |
---|
| 1163 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[222] | 1164 | fi |
---|
| 1165 | |
---|
[717] | 1166 | typeset status |
---|
[544] | 1167 | # |
---|
| 1168 | if [ X${JobType} = XRUN ] ; then |
---|
| 1169 | IGCM_sys_Chmod 444 ${1} |
---|
| 1170 | fi |
---|
[222] | 1171 | |
---|
[544] | 1172 | # |
---|
| 1173 | # USUAL WAY |
---|
| 1174 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1175 | status=$? |
---|
[544] | 1176 | |
---|
[623] | 1177 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1178 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1179 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[222] | 1180 | |
---|
[623] | 1181 | # #RSYNC WITH NFS USE |
---|
| 1182 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1183 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[222] | 1184 | |
---|
[717] | 1185 | # status=$? |
---|
| 1186 | # IGCM_sys_Rsync_out $status |
---|
[222] | 1187 | |
---|
[623] | 1188 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 1189 | # (( status=status+$? )) |
---|
[222] | 1190 | |
---|
[717] | 1191 | if [ ${status} -gt 0 ] ; then |
---|
| 1192 | echo "IGCM_sys_Put_Rest : cp failed error code ${status}" |
---|
[544] | 1193 | cat out_rsync |
---|
| 1194 | IGCM_debug_Exit "IGCM_sys_Put_Rest" |
---|
[222] | 1195 | else |
---|
[544] | 1196 | \rm out_rsync |
---|
[222] | 1197 | fi |
---|
[544] | 1198 | else |
---|
| 1199 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1200 | fi |
---|
| 1201 | IGCM_debug_PopStack "IGCM_sys_Put_Rest" |
---|
[222] | 1202 | } |
---|
| 1203 | |
---|
| 1204 | #D-#================================================== |
---|
[544] | 1205 | #D-function IGCM_sys_PutBuffer_Rest |
---|
| 1206 | #D-* Purpose: Put computied restarts on ${SCRATCHDIR}. |
---|
| 1207 | #D- File and target directory must exist. |
---|
| 1208 | #D-* Examples: |
---|
| 1209 | #D- |
---|
| 1210 | function IGCM_sys_PutBuffer_Rest { |
---|
| 1211 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Rest" $@ |
---|
| 1212 | if ( $DEBUG_sys ) ; then |
---|
| 1213 | echo "IGCM_sys_PutBuffer_Rest :" $@ |
---|
| 1214 | fi |
---|
| 1215 | if [ $DRYRUN = 0 ]; then |
---|
| 1216 | if [ ! -f ${1} ] ; then |
---|
| 1217 | echo "ERROR : IGCM_sys_PutBuffer_Rest ${1} DOES NOT EXIST ." |
---|
| 1218 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1219 | fi |
---|
| 1220 | |
---|
[717] | 1221 | typeset status |
---|
[544] | 1222 | # |
---|
| 1223 | if [ X${JobType} = XRUN ] ; then |
---|
| 1224 | IGCM_sys_Chmod 444 ${1} |
---|
| 1225 | fi |
---|
| 1226 | |
---|
| 1227 | # |
---|
| 1228 | # USUAL WAY |
---|
| 1229 | \cp $1 $2 > out_rsync 2>&1 |
---|
[717] | 1230 | status=$? |
---|
[544] | 1231 | |
---|
[717] | 1232 | if [ ${status} -gt 0 ] ; then |
---|
| 1233 | echo "IGCM_sys_PutBuffer_Rest : error code ${status}" |
---|
[544] | 1234 | cat out_rsync |
---|
| 1235 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Rest" |
---|
| 1236 | else |
---|
| 1237 | \rm out_rsync |
---|
| 1238 | fi |
---|
| 1239 | else |
---|
| 1240 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1241 | fi |
---|
| 1242 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Rest" |
---|
| 1243 | } |
---|
| 1244 | |
---|
| 1245 | #D-#================================================== |
---|
[801] | 1246 | #D-function IGCM_sys_PrepareTaredRestart |
---|
| 1247 | #D-* Purpose: Prepare tared restart to be access by computing job. Identity here. |
---|
| 1248 | #D-* Examples: |
---|
| 1249 | #D- |
---|
| 1250 | function IGCM_sys_PrepareTaredRestart { |
---|
| 1251 | IGCM_debug_PushStack "IGCM_sys_PrepareTaredRestart" $@ |
---|
| 1252 | echo $1 |
---|
| 1253 | IGCM_debug_PopStack "IGCM_sys_PrepareTaredRestart" |
---|
| 1254 | } |
---|
| 1255 | |
---|
| 1256 | #D-#================================================== |
---|
[222] | 1257 | #D-function IGCM_sys_Put_Out |
---|
[544] | 1258 | #D-* Purpose: Copy a file on ${ARCHIVE} after having chmod it in readonly |
---|
[222] | 1259 | #D-* Examples: |
---|
| 1260 | #D- |
---|
| 1261 | function IGCM_sys_Put_Out { |
---|
[544] | 1262 | IGCM_debug_PushStack "IGCM_sys_Put_Out" $@ |
---|
| 1263 | if ( $DEBUG_sys ) ; then |
---|
| 1264 | echo "IGCM_sys_Put_Out :" $@ |
---|
| 1265 | fi |
---|
[676] | 1266 | |
---|
[717] | 1267 | typeset NB_ESSAI DELAI status i exist skip |
---|
[676] | 1268 | |
---|
| 1269 | # number of tentative |
---|
| 1270 | NB_ESSAI=3 |
---|
| 1271 | # time delay between tentative |
---|
| 1272 | DELAI=2 |
---|
| 1273 | |
---|
[544] | 1274 | if [ $DRYRUN = 0 ]; then |
---|
| 1275 | if [ ! -f ${1} ] ; then |
---|
| 1276 | echo "WARNING : IGCM_sys_Put_Out ${1} DOES NOT EXIST ." |
---|
| 1277 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1278 | return 1 |
---|
[222] | 1279 | fi |
---|
[544] | 1280 | # |
---|
| 1281 | IGCM_sys_MkdirArchive $( dirname $2 ) |
---|
| 1282 | # |
---|
[222] | 1283 | |
---|
[544] | 1284 | #===================================================== |
---|
| 1285 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1286 | #===================================================== |
---|
[222] | 1287 | |
---|
[544] | 1288 | #echo ${2} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1289 | #if [ $? -eq 0 ] ; then |
---|
| 1290 | # typeset WORKPATH FILEPATH |
---|
| 1291 | # WORKPATH=$( dirname $2 | sed -e "s|${R_OUT}|${R_BUF}|" ) |
---|
[623] | 1292 | # IGCM_sys_MkdirWork ${WORKPATH} |
---|
[544] | 1293 | # FILEPATH=${WORKPATH}/$( basename $2 ) |
---|
| 1294 | # # |
---|
| 1295 | # IGCM_sys_Cp ${1} ${FILEPATH} |
---|
| 1296 | #fi |
---|
[222] | 1297 | |
---|
[544] | 1298 | if [ X${JobType} = XRUN ] ; then |
---|
| 1299 | if [ X${3} = X ] ; then |
---|
[623] | 1300 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1301 | fi |
---|
| 1302 | fi |
---|
| 1303 | # |
---|
[676] | 1304 | |
---|
[717] | 1305 | exist=false |
---|
| 1306 | skip=false |
---|
| 1307 | if [ -f $2 ] ; then |
---|
| 1308 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1309 | #dmget $2 |
---|
| 1310 | ccc_hsm get $2 |
---|
| 1311 | exist=true |
---|
| 1312 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1313 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1314 | skip=true |
---|
[676] | 1315 | else |
---|
[717] | 1316 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1317 | skip=false |
---|
[676] | 1318 | fi |
---|
[717] | 1319 | fi |
---|
| 1320 | # |
---|
| 1321 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1322 | IGCM_sys_Chmod u+w $2 |
---|
| 1323 | fi |
---|
[222] | 1324 | |
---|
[717] | 1325 | if [ X${skip} = Xfalse ] ; then |
---|
[719] | 1326 | i=0 |
---|
[717] | 1327 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1328 | # USUAL WAY |
---|
| 1329 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1330 | status=$? |
---|
| 1331 | if [ ${status} -gt 0 ]; then |
---|
| 1332 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1333 | IGCM_debug_Print 2 "IGCM_sys_Put_Out : sleep ${DELAI} seconds and try again." |
---|
[729] | 1334 | if [ -f $2 ] ; then |
---|
| 1335 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1336 | IGCM_debug_Print 2 "$1 and $2 are the same file" |
---|
| 1337 | IGCM_debug_Print 2 "Cp gave an error but the file has been copied properly!" |
---|
[745] | 1338 | status=0 |
---|
| 1339 | \rm out_rsync |
---|
[729] | 1340 | break |
---|
| 1341 | else |
---|
| 1342 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we continue to try" |
---|
[730] | 1343 | \rm $2 |
---|
[729] | 1344 | fi |
---|
| 1345 | fi |
---|
[717] | 1346 | sleep $DELAI |
---|
| 1347 | else |
---|
| 1348 | break |
---|
| 1349 | fi |
---|
| 1350 | (( i = i + 1 )) |
---|
| 1351 | done |
---|
| 1352 | fi |
---|
| 1353 | |
---|
[623] | 1354 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1355 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} > out_rsync 2>&1 |
---|
| 1356 | # ${RSYNC} ${RSYNC_opt} -e ssh ${RUN_DIR}/$1 ${STOREHOST}:${2} >> out_rsync 2>&1 |
---|
[222] | 1357 | |
---|
[623] | 1358 | # #RSYNC WITH NFS USE |
---|
| 1359 | # echo ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} > out_rsync 2>&1 |
---|
| 1360 | # ${RSYNC} ${RSYNC_opt} ${RUN_DIR}/$1 ${2} >> out_rsync 2>&1 |
---|
[222] | 1361 | |
---|
[717] | 1362 | # status=$? |
---|
| 1363 | # IGCM_sys_Rsync_out $status |
---|
[222] | 1364 | |
---|
[623] | 1365 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
[717] | 1366 | # (( status=status+$? )) |
---|
[222] | 1367 | |
---|
[717] | 1368 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1369 | echo "IGCM_sys_Put_Out : error." |
---|
| 1370 | cat out_rsync |
---|
| 1371 | IGCM_debug_Exit "IGCM_sys_Put_Out" |
---|
[222] | 1372 | else |
---|
[544] | 1373 | \rm out_rsync |
---|
[222] | 1374 | fi |
---|
[544] | 1375 | else |
---|
| 1376 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1377 | fi |
---|
| 1378 | IGCM_debug_PopStack "IGCM_sys_Put_Out" |
---|
| 1379 | return 0 |
---|
[222] | 1380 | } |
---|
| 1381 | |
---|
| 1382 | #D-#================================================== |
---|
[544] | 1383 | #D-function IGCM_sys_PutBuffer_Out |
---|
| 1384 | #D-* Purpose: Copy a file on ${SCRATCHDIR} after having chmod it in readonly |
---|
| 1385 | #D-* Examples: |
---|
| 1386 | #D- |
---|
| 1387 | function IGCM_sys_PutBuffer_Out { |
---|
| 1388 | IGCM_debug_PushStack "IGCM_sys_PutBuffer_Out" $@ |
---|
| 1389 | if ( $DEBUG_sys ) ; then |
---|
| 1390 | echo "IGCM_sys_PutBuffer_Out :" $@ |
---|
| 1391 | fi |
---|
[717] | 1392 | |
---|
[725] | 1393 | typeset NB_ESSAI DELAI status i exist skip |
---|
[717] | 1394 | |
---|
| 1395 | # number of tentative |
---|
| 1396 | NB_ESSAI=3 |
---|
| 1397 | # time delay between tentative |
---|
| 1398 | DELAI=2 |
---|
| 1399 | |
---|
[544] | 1400 | if [ $DRYRUN = 0 ]; then |
---|
| 1401 | if [ ! -f ${1} ] ; then |
---|
| 1402 | echo "WARNING : IGCM_sys_PutBuffer_Out ${1} DOES NOT EXIST ." |
---|
| 1403 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1404 | return 1 |
---|
| 1405 | fi |
---|
| 1406 | # |
---|
| 1407 | IGCM_sys_Mkdir $( dirname $2 ) |
---|
| 1408 | # |
---|
| 1409 | |
---|
| 1410 | if [ X${JobType} = XRUN ] ; then |
---|
| 1411 | if [ X${3} = X ] ; then |
---|
[623] | 1412 | IGCM_sys_Chmod 444 ${1} |
---|
[544] | 1413 | fi |
---|
| 1414 | fi |
---|
[717] | 1415 | |
---|
| 1416 | exist=false |
---|
| 1417 | skip=false |
---|
| 1418 | if [ -f $2 ] ; then |
---|
| 1419 | IGCM_debug_Print 1 "$2 already exist" |
---|
| 1420 | exist=true |
---|
| 1421 | if [ "X$( diff $1 $2 )" = X ] ; then |
---|
| 1422 | IGCM_debug_Print 2 "$1 and $2 are the same file, we skip the copy" |
---|
| 1423 | skip=true |
---|
| 1424 | else |
---|
| 1425 | IGCM_debug_Print 2 "$1 and $2 are not the same file, we force the copy" |
---|
| 1426 | skip=false |
---|
| 1427 | fi |
---|
| 1428 | fi |
---|
[544] | 1429 | # |
---|
[717] | 1430 | if ( [ X${exist} = Xtrue ] && [ X${skip} = Xfalse ] ) ; then |
---|
| 1431 | IGCM_sys_Chmod u+w $2 |
---|
| 1432 | fi |
---|
[544] | 1433 | |
---|
[717] | 1434 | if [ X${skip} = Xfalse ] ; then |
---|
| 1435 | i=0 |
---|
| 1436 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1437 | # USUAL WAY |
---|
| 1438 | \cp $1 $2 > out_rsync 2>&1 |
---|
| 1439 | status=$? |
---|
| 1440 | if [ ${status} -gt 0 ]; then |
---|
| 1441 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1442 | IGCM_debug_Print 2 "IGCM_sys_PutBuffer_Out : sleep ${DELAI} seconds and try again." |
---|
| 1443 | sleep $DELAI |
---|
| 1444 | else |
---|
| 1445 | break |
---|
| 1446 | fi |
---|
| 1447 | (( i = i + 1 )) |
---|
| 1448 | done |
---|
| 1449 | fi |
---|
| 1450 | |
---|
| 1451 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1452 | echo "IGCM_sys_PutBuffer_Out : error." |
---|
| 1453 | cat out_rsync |
---|
| 1454 | IGCM_debug_Exit "IGCM_sys_PutBuffer_Out" |
---|
| 1455 | else |
---|
| 1456 | \rm out_rsync |
---|
| 1457 | fi |
---|
| 1458 | else |
---|
| 1459 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1460 | fi |
---|
| 1461 | IGCM_debug_PopStack "IGCM_sys_PutBuffer_Out" |
---|
| 1462 | return 0 |
---|
| 1463 | } |
---|
| 1464 | |
---|
| 1465 | #D-#================================================== |
---|
[222] | 1466 | #D-function IGCM_sys_Get |
---|
| 1467 | #D-* Purpose: Get a file from ${ARCHIVE} |
---|
| 1468 | #D-* Examples: IGCM_sys_Get myfile /destpath/myfile_with_PREFIX |
---|
| 1469 | #D- IGCM_sys_Get /l Array_contain_myfiles /destpath/ |
---|
| 1470 | function IGCM_sys_Get { |
---|
[544] | 1471 | IGCM_debug_PushStack "IGCM_sys_Get" $@ |
---|
[222] | 1472 | |
---|
[719] | 1473 | typeset DEST dm_liste ifile target file_work |
---|
[676] | 1474 | typeset NB_ESSAI DELAI status i |
---|
[222] | 1475 | |
---|
[544] | 1476 | if ( $DEBUG_sys ) ; then |
---|
| 1477 | echo "IGCM_sys_Get :" $@ |
---|
| 1478 | fi |
---|
[676] | 1479 | |
---|
| 1480 | # number of tentative |
---|
| 1481 | NB_ESSAI=3 |
---|
| 1482 | # time delay between tentative |
---|
| 1483 | DELAI=2 |
---|
| 1484 | |
---|
[544] | 1485 | if [ $DRYRUN -le 2 ]; then |
---|
| 1486 | if [ X${1} = X'/l' ] ; then |
---|
| 1487 | # test if the first file is present in the old computation : |
---|
| 1488 | eval set +A dm_liste \${${2}} |
---|
| 1489 | else |
---|
| 1490 | eval set +A dm_liste ${1} |
---|
[222] | 1491 | fi |
---|
[544] | 1492 | eval DEST=\${${#}} |
---|
[222] | 1493 | |
---|
[544] | 1494 | #===================================================== |
---|
| 1495 | # COMMENT OUT DOUBLE COPY ON SCRATCHDIR |
---|
| 1496 | #===================================================== |
---|
[222] | 1497 | |
---|
[544] | 1498 | # Is it an R_OUT file (not R_IN) ? |
---|
| 1499 | #echo ${dm_liste[0]} | grep "${R_OUT}" > /dev/null 2>&1 |
---|
| 1500 | #if [ $? -eq 0 ] ; then |
---|
| 1501 | # # Yes ? then we try to get it in SCRATCHDIR |
---|
| 1502 | # set +A file_work $( echo ${dm_liste[*]} | sed -e "s|${R_OUT}|${R_BUF}|g" ) |
---|
| 1503 | # if [ -f ${file_work[0]} ] ; then |
---|
| 1504 | # IGCM_sys_Cp ${file_work[*]} ${DEST} |
---|
| 1505 | # IGCM_debug_PopStack "IGCM_sys_Get" |
---|
| 1506 | # return |
---|
| 1507 | # fi |
---|
| 1508 | #fi |
---|
[222] | 1509 | |
---|
[587] | 1510 | ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1511 | status=$? |
---|
| 1512 | if [ ${status} -gt 0 ] ; then |
---|
| 1513 | echo "WARNING IGCM_sys_Get : error code ${status}" |
---|
[544] | 1514 | cat out_rsync |
---|
| 1515 | echo "WARNING IGCM_sys_Get : will stop later if the cp fails." |
---|
| 1516 | fi |
---|
[222] | 1517 | |
---|
[717] | 1518 | #if [ ${status} -gt 0 ] ; then |
---|
[544] | 1519 | # if [ ! "X$( grep "Lost dmusrcmd connection" out_rsync )" = "X" ] ; then |
---|
| 1520 | # cat out_rsync |
---|
| 1521 | # echo "WARNING IGCM_sys_Get : Lost dmusrcmd connection : " |
---|
| 1522 | # sleep 30 |
---|
| 1523 | # echo "We try another time" |
---|
[587] | 1524 | ## dmget ${dm_liste[*]} > out_rsync 2>&1 |
---|
| 1525 | # ccc_hsm get ${dm_liste[*]} > out_rsync 2>&1 |
---|
[717] | 1526 | # status=$? |
---|
| 1527 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1528 | # echo "ERROR IGCM_sys_Get : again demigration error :" |
---|
| 1529 | # cat out_rsync |
---|
| 1530 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
[544] | 1531 | # fi |
---|
| 1532 | # else |
---|
| 1533 | # echo "ERROR IGCM_sys_Get : demigration error :" |
---|
| 1534 | # cat out_rsync |
---|
| 1535 | # IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1536 | # fi |
---|
| 1537 | #fi |
---|
[520] | 1538 | |
---|
[719] | 1539 | # #RSYNC WITH NETWORK SSH CALL |
---|
| 1540 | # echo ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1541 | # ${RSYNC} ${RSYNC_opt} -e ssh ${STOREHOST}:"${dm_liste}" ${STOREHOST}:${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1542 | |
---|
| 1543 | # #RSYNC WITH NFS USE |
---|
| 1544 | # echo ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} > out_rsync 2>&1 |
---|
| 1545 | # ${RSYNC} ${RSYNC_opt} ${dm_liste} ${RUN_DIR}/${DEST} >> out_rsync 2>&1 |
---|
| 1546 | |
---|
| 1547 | # status=$? |
---|
| 1548 | # IGCM_sys_Rsync_out $status |
---|
| 1549 | |
---|
| 1550 | # ${libIGCM}/libIGCM_sys/IGCM_analyse_rsync_out.awk out_rsync |
---|
| 1551 | # (( status=status+$? )) |
---|
| 1552 | |
---|
[544] | 1553 | #USUAL WAY |
---|
| 1554 | if [ X${1} = X'/l' ] ; then |
---|
| 1555 | for target in ${dm_liste[*]} ; do |
---|
[623] | 1556 | local_file=$( basename ${target} ) |
---|
[676] | 1557 | # test if the target file is present before the loop |
---|
| 1558 | IGCM_sys_TestFileArchive ${target} |
---|
[717] | 1559 | status=$? |
---|
| 1560 | if [ ${status} -gt 0 ] ; then |
---|
[705] | 1561 | echo "IGCM_sys_Get, ERROR : regular file ${target} DOES NOT EXIST ." |
---|
[676] | 1562 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1563 | else |
---|
[719] | 1564 | i=0 |
---|
[676] | 1565 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1566 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1567 | status=$? |
---|
| 1568 | if [ ${status} -gt 0 ]; then |
---|
[717] | 1569 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1570 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1571 | sleep $DELAI |
---|
[676] | 1572 | else |
---|
[717] | 1573 | break |
---|
[676] | 1574 | fi |
---|
| 1575 | (( i = i + 1 )) |
---|
| 1576 | done |
---|
[719] | 1577 | if [ ${status} -gt 0 ] ; then |
---|
| 1578 | echo "IGCM_sys_Get : error" |
---|
| 1579 | cat out_rsync |
---|
| 1580 | \rm out_rsync |
---|
| 1581 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1582 | else |
---|
| 1583 | \rm out_rsync |
---|
| 1584 | fi |
---|
[676] | 1585 | fi |
---|
[544] | 1586 | done |
---|
| 1587 | else |
---|
[719] | 1588 | i=0 |
---|
| 1589 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1590 | \cp ${dm_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1591 | status=$? |
---|
| 1592 | if [ ${status} -gt 0 ]; then |
---|
| 1593 | IGCM_debug_Print 2 "IGCM_sys_Get : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1594 | IGCM_debug_Print 2 "IGCM_sys_Get : sleep ${DELAI} seconds and try again." |
---|
| 1595 | sleep $DELAI |
---|
| 1596 | else |
---|
| 1597 | break |
---|
| 1598 | fi |
---|
| 1599 | (( i = i + 1 )) |
---|
| 1600 | done |
---|
| 1601 | if [ ${status} -gt 0 ] ; then |
---|
| 1602 | echo "IGCM_sys_Get : error" |
---|
| 1603 | cat out_rsync |
---|
| 1604 | \rm out_rsync |
---|
| 1605 | IGCM_debug_Exit "IGCM_sys_Get" |
---|
| 1606 | else |
---|
| 1607 | \rm out_rsync |
---|
| 1608 | fi |
---|
[544] | 1609 | fi |
---|
| 1610 | else |
---|
| 1611 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1612 | fi |
---|
| 1613 | IGCM_debug_PopStack "IGCM_sys_Get" |
---|
[222] | 1614 | } |
---|
| 1615 | |
---|
| 1616 | #D-#================================================== |
---|
[544] | 1617 | #D-function IGCM_sys_GetBuffer |
---|
| 1618 | #D-* Purpose: Get a file from ${SCRATCHDIR} |
---|
| 1619 | #D-* Examples: IGCM_sys_GetBuffer myfile /destpath/myfile_with_PREFIX |
---|
| 1620 | #D- IGCM_sys_GetBuffer /l Array_contain_myfiles /destpath/ |
---|
| 1621 | function IGCM_sys_GetBuffer { |
---|
| 1622 | IGCM_debug_PushStack "IGCM_sys_GetBuffer" $@ |
---|
| 1623 | |
---|
[719] | 1624 | typeset DEST buf_liste ifile target file_work |
---|
| 1625 | typeset NB_ESSAI DELAI status i |
---|
[544] | 1626 | |
---|
| 1627 | if ( $DEBUG_sys ) ; then |
---|
| 1628 | echo "IGCM_sys_GetBuffer :" $@ |
---|
| 1629 | fi |
---|
[719] | 1630 | |
---|
| 1631 | # number of tentative |
---|
| 1632 | NB_ESSAI=3 |
---|
| 1633 | # time delay between tentative |
---|
| 1634 | DELAI=2 |
---|
| 1635 | |
---|
[544] | 1636 | if [ $DRYRUN -le 2 ]; then |
---|
| 1637 | if [ X${1} = X'/l' ] ; then |
---|
| 1638 | # test if the first file is present in the old computation : |
---|
| 1639 | eval set +A buf_liste \${${2}} |
---|
| 1640 | else |
---|
| 1641 | eval set +A buf_liste ${1} |
---|
| 1642 | fi |
---|
| 1643 | eval DEST=\${${#}} |
---|
| 1644 | |
---|
| 1645 | #USUAL WAY |
---|
| 1646 | if [ X${1} = X'/l' ] ; then |
---|
| 1647 | for target in ${buf_liste[*]} ; do |
---|
[623] | 1648 | local_file=$( basename ${target} ) |
---|
[719] | 1649 | i=0 |
---|
| 1650 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1651 | \cp ${target} ${DEST}/${local_file} >> out_rsync 2>&1 |
---|
| 1652 | status=$? |
---|
| 1653 | if [ ${status} -gt 0 ]; then |
---|
| 1654 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1655 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1656 | sleep $DELAI |
---|
| 1657 | else |
---|
| 1658 | break |
---|
| 1659 | fi |
---|
| 1660 | (( i = i + 1 )) |
---|
| 1661 | done |
---|
| 1662 | if [ ${status} -gt 0 ] ; then |
---|
| 1663 | echo "IGCM_sys_Get : error" |
---|
| 1664 | cat out_rsync |
---|
| 1665 | \rm out_rsync |
---|
| 1666 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1667 | else |
---|
| 1668 | \rm out_rsync |
---|
| 1669 | fi |
---|
[544] | 1670 | done |
---|
| 1671 | else |
---|
[719] | 1672 | i=0 |
---|
| 1673 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1674 | \cp ${buf_liste} ${DEST} >> out_rsync 2>&1 |
---|
| 1675 | status=$? |
---|
| 1676 | if [ ${status} -gt 0 ]; then |
---|
| 1677 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : cp failed error code ${status} ${i}/${NB_ESSAI}" |
---|
| 1678 | IGCM_debug_Print 2 "IGCM_sys_GetBuffer : sleep ${DELAI} seconds and try again." |
---|
| 1679 | sleep $DELAI |
---|
| 1680 | else |
---|
| 1681 | break |
---|
| 1682 | fi |
---|
| 1683 | (( i = i + 1 )) |
---|
| 1684 | done |
---|
| 1685 | if [ ${status} -gt 0 ] ; then |
---|
| 1686 | echo "IGCM_sys_Get : error" |
---|
| 1687 | cat out_rsync |
---|
| 1688 | \rm out_rsync |
---|
| 1689 | IGCM_debug_Exit "IGCM_sys_GetBuffer" |
---|
| 1690 | else |
---|
| 1691 | \rm out_rsync |
---|
| 1692 | fi |
---|
[544] | 1693 | fi |
---|
| 1694 | else |
---|
| 1695 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1696 | fi |
---|
| 1697 | IGCM_debug_PopStack "IGCM_sys_GetBuffer" |
---|
| 1698 | } |
---|
| 1699 | |
---|
| 1700 | #D-#================================================== |
---|
[222] | 1701 | #D-function IGCM_sys_GetDate_FichWork |
---|
| 1702 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem WORK |
---|
| 1703 | #D-* Examples: |
---|
| 1704 | #D- |
---|
| 1705 | function IGCM_sys_GetDate_FichWork { |
---|
[544] | 1706 | IGCM_debug_PushStack "IGCM_sys_FichWork" $@ |
---|
| 1707 | if ( $DEBUG_sys ) ; then |
---|
| 1708 | echo "IGCM_sys_GetDate_FichWork :" $@ |
---|
| 1709 | fi |
---|
| 1710 | typeset dateF |
---|
| 1711 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1712 | eval ${2}=${dateF[5]} |
---|
[538] | 1713 | |
---|
[222] | 1714 | # donne la date filesys d'un fichier sur la machine work |
---|
[544] | 1715 | IGCM_debug_PopStack "IGCM_sys_FichWork" |
---|
[222] | 1716 | } |
---|
| 1717 | |
---|
| 1718 | #D-#================================================== |
---|
| 1719 | #D-function IGCM_sys_GetDate_FichArchive |
---|
[623] | 1720 | #D-* Purpose: donne la date filesys d'un fichier sur le filesystem ARCHIVE |
---|
[222] | 1721 | #D-* Examples: |
---|
| 1722 | #D- |
---|
| 1723 | function IGCM_sys_GetDate_FichArchive { |
---|
[544] | 1724 | IGCM_debug_PushStack "IGCM_sys_FichArchive" $@ |
---|
| 1725 | if ( $DEBUG_sys ) ; then |
---|
| 1726 | echo "IGCM_sys_GetDate_FichArchive :" $@ |
---|
| 1727 | fi |
---|
| 1728 | typeset dateF |
---|
| 1729 | set +A dateF -- $( ls -l --full-time --time-style='+%Y%m%d%H%M%S' ${1} ) |
---|
| 1730 | eval ${2}=${dateF[5]} |
---|
| 1731 | |
---|
| 1732 | IGCM_debug_PopStack "IGCM_sys_FichArchive" |
---|
| 1733 | } |
---|
| 1734 | |
---|
| 1735 | #D-#================================================== |
---|
| 1736 | #D-function IGCM_sys_Dods_Rm |
---|
| 1737 | #D-* Purpose: DO NOTHING ! Put ${ARCHIVE} files on DODS internet protocole. |
---|
| 1738 | #D-* Examples: |
---|
| 1739 | #D- |
---|
| 1740 | function IGCM_sys_Dods_Rm { |
---|
| 1741 | if ( $DEBUG_sys ) ; then |
---|
| 1742 | echo "IGCM_sys_Dods_Rm :" $@ |
---|
| 1743 | fi |
---|
[717] | 1744 | typeset status |
---|
[544] | 1745 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1746 | |
---|
| 1747 | # if [ ! -d /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} ] ; then |
---|
| 1748 | # echo "WARNING : IGCM_sys_Dods_Rm /dmnfs/cont003/dods/public/${LOGIN}/${R_DODS}/${1} DOES NOT EXIST ." |
---|
| 1749 | # echo "Nothing has been done." |
---|
| 1750 | # return |
---|
| 1751 | # fi |
---|
| 1752 | |
---|
[649] | 1753 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_rm public/${LOGIN}/${R_DODS}/${1} # > out_dods_rm 2>&1 |
---|
[717] | 1754 | status=$? |
---|
[623] | 1755 | |
---|
[717] | 1756 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1757 | # echo "IGCM_sys_Dods_Rm : error." |
---|
| 1758 | # cat out_dods_rm |
---|
| 1759 | # IGCM_debug_Exit "IGCM_sys_Dods_Rm" |
---|
[544] | 1760 | # else |
---|
[623] | 1761 | # rm out_dods_rm |
---|
[544] | 1762 | # fi |
---|
[538] | 1763 | |
---|
[544] | 1764 | else |
---|
| 1765 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1766 | fi |
---|
[717] | 1767 | return $status |
---|
[222] | 1768 | } |
---|
| 1769 | |
---|
[544] | 1770 | #D-#================================================== |
---|
| 1771 | #D-function IGCM_sys_Dods_Cp |
---|
| 1772 | #D-* Purpose: Copy $(ARCHIVE) files on DODS internet protocole. |
---|
| 1773 | #D-* Examples: |
---|
| 1774 | #D- |
---|
| 1775 | function IGCM_sys_Dods_Cp { |
---|
| 1776 | if ( $DEBUG_sys ) ; then |
---|
| 1777 | echo "IGCM_sys_Dods_Cp :" $@ |
---|
| 1778 | fi |
---|
[717] | 1779 | typeset status |
---|
[544] | 1780 | if [ $DRYRUN = 0 ]; then |
---|
[591] | 1781 | |
---|
| 1782 | # if [ ! -d ${R_SAVE}/${1} ] ; then |
---|
| 1783 | # echo "WARNING : IGCM_sys_Dods_Cp ${R_SAVE}/${1} DOES NOT EXIST ." |
---|
| 1784 | # echo "Nothing has been done." |
---|
| 1785 | # return |
---|
| 1786 | # fi |
---|
| 1787 | |
---|
[649] | 1788 | /ccc/cont003/home/dsm/p86ipsl/bin/dods_cp ${1} public/${LOGIN}/${R_DODS} # > out_dods_cp 2>&1 |
---|
[717] | 1789 | status=$? |
---|
[544] | 1790 | |
---|
[717] | 1791 | # if [ ${status} -gt 0 ] ; then |
---|
[623] | 1792 | # echo "IGCM_sys_Dods_Cp : error." |
---|
| 1793 | # cat out_dods_cp |
---|
| 1794 | # IGCM_debug_Exit "IGCM_sys_Dods_Cp" |
---|
| 1795 | # else |
---|
| 1796 | # rm out_dods_cp |
---|
| 1797 | # fi |
---|
[544] | 1798 | |
---|
| 1799 | else |
---|
| 1800 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1801 | fi |
---|
[717] | 1802 | return $status |
---|
[544] | 1803 | } |
---|
| 1804 | |
---|
| 1805 | #D-#================================================== |
---|
| 1806 | #D-function IGCM_sys_Put_Dods |
---|
| 1807 | #D-* Purpose: Put $(ARCHIVE) files on DODS internet protocole. |
---|
| 1808 | #D-* Examples: |
---|
| 1809 | #D- |
---|
| 1810 | function IGCM_sys_Put_Dods { |
---|
| 1811 | IGCM_debug_PushStack "IGCM_sys_Put_Dods" $@ |
---|
| 1812 | if ( $DEBUG_sys ) ; then |
---|
| 1813 | echo "IGCM_sys_Put_Dods :" $@ |
---|
| 1814 | fi |
---|
[717] | 1815 | #set -vx |
---|
| 1816 | typeset status |
---|
[544] | 1817 | if [ $DRYRUN = 0 ]; then |
---|
[587] | 1818 | if ( [ ! -d ${R_SAVE}/${1} ] && [ ! -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1819 | echo "WARNING IGCM_sys_Put_Dods : None of the following directories exist. Exactly one should." |
---|
| 1820 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} DOES NOT EXIST." |
---|
| 1821 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} DOES NOT EXIST." |
---|
[544] | 1822 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1823 | return |
---|
| 1824 | fi |
---|
| 1825 | |
---|
[587] | 1826 | if ( [ -d ${R_SAVE}/${1} ] && [ -d ${R_FIGR}/${1} ] ) ; then |
---|
| 1827 | echo "WARNING IGCM_sys_Put_Dods : Both of the following directories exist. Exactly one should." |
---|
| 1828 | echo "WARNING IGCM_sys_Put_Dods : ${R_SAVE}/${1} EXISTS." |
---|
| 1829 | echo "WARNING IGCM_sys_Put_Dods : ${R_FIGR}/${1} EXISTS." |
---|
| 1830 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1831 | return |
---|
| 1832 | fi |
---|
| 1833 | # |
---|
| 1834 | if [ -d ${R_SAVE}/${1} ] ; then |
---|
| 1835 | cd ${R_SAVE} |
---|
| 1836 | elif [ -d ${R_FIGR}/${1} ] ; then |
---|
| 1837 | cd ${R_FIGR} |
---|
| 1838 | fi |
---|
| 1839 | |
---|
[544] | 1840 | IGCM_sys_Dods_Rm ${1} |
---|
| 1841 | IGCM_sys_Dods_Cp ${1} |
---|
[717] | 1842 | status=0 |
---|
[623] | 1843 | |
---|
[717] | 1844 | if [ ${status} -gt 0 ] ; then |
---|
[544] | 1845 | echo "IGCM_sys_Put_Dods : error." |
---|
| 1846 | IGCM_debug_Exit "IGCM_sys_Put_Dods" |
---|
| 1847 | fi |
---|
| 1848 | else |
---|
| 1849 | ( ${DEBUG_debug} ) && echo "DRYRUN mode = " $DRYRUN >> stack |
---|
| 1850 | fi |
---|
| 1851 | IGCM_debug_PopStack "IGCM_sys_Put_Dods" |
---|
| 1852 | } |
---|
| 1853 | |
---|
[222] | 1854 | ############################################################## |
---|
| 1855 | # REBUILD OPERATOR |
---|
| 1856 | |
---|
| 1857 | function IGCM_sys_rebuild { |
---|
[544] | 1858 | IGCM_debug_PushStack "IGCM_sys_rebuild" -- $@ |
---|
| 1859 | if ( $DEBUG_sys ) ; then |
---|
| 1860 | echo "IGCM_sys_rebuild :" $@ |
---|
| 1861 | fi |
---|
[717] | 1862 | |
---|
[734] | 1863 | typeset NB_ESSAI DELAI status i firstArg |
---|
[717] | 1864 | # number of tentative |
---|
| 1865 | NB_ESSAI=3 |
---|
| 1866 | # time delay between tentative |
---|
| 1867 | DELAI=2 |
---|
| 1868 | |
---|
| 1869 | i=0 |
---|
| 1870 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 1871 | /home/cont003/p86ipsl/X64/bin/rebuild -f -o $@ > out_rsync 2>&1 |
---|
| 1872 | status=$? |
---|
| 1873 | if [ ${status} -gt 0 ] ; then |
---|
| 1874 | IGCM_debug_Print 2 "IGCM_sys_rebuild : error code ${status}" |
---|
| 1875 | cat out_rsync |
---|
| 1876 | \rm out_rsync |
---|
| 1877 | IGCM_debug_Print 2 "IGCM_sys_rebuild : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[734] | 1878 | firstArg=${1} |
---|
| 1879 | \rm ${firstArg} |
---|
[733] | 1880 | sleep $DELAI |
---|
[717] | 1881 | else |
---|
| 1882 | \rm out_rsync |
---|
| 1883 | break |
---|
| 1884 | fi |
---|
| 1885 | (( i = i + 1 )) |
---|
| 1886 | done |
---|
| 1887 | |
---|
[725] | 1888 | if [ ${status} -gt 0 ] ; then |
---|
[717] | 1889 | echo "IGCM_sys_rebuild : rebuild error" |
---|
[544] | 1890 | IGCM_debug_Exit "rebuild" |
---|
| 1891 | fi |
---|
[222] | 1892 | |
---|
[544] | 1893 | IGCM_debug_PopStack "IGCM_sys_rebuild" |
---|
[222] | 1894 | } |
---|
| 1895 | |
---|
[697] | 1896 | function IGCM_sys_rebuild_station { |
---|
| 1897 | IGCM_debug_PushStack "IGCM_sys_rebuild_station" -- $@ |
---|
| 1898 | typeset i list_opt file_in file_out prefix_invert list_invert |
---|
| 1899 | if ( $DEBUG_sys ) ; then |
---|
| 1900 | echo "IGCM_sys_rebuild_station :" $@ |
---|
| 1901 | fi |
---|
| 1902 | list_opt=$@ |
---|
| 1903 | |
---|
[725] | 1904 | # Invert Axis : t,x -> x,t |
---|
[697] | 1905 | # t,pres,x -> x,t,pres |
---|
| 1906 | # So that we can concatenate along x |
---|
| 1907 | i=0 |
---|
| 1908 | for file_in in ${list_opt} ; do |
---|
| 1909 | (( i = i + 1)) |
---|
| 1910 | [ ${i} = 1 ] && file_out=${file_in} && continue |
---|
| 1911 | prefix_invert=$( basename ${file_in} .nc ) |
---|
| 1912 | IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs ${file_in} ${prefix_invert}_xt.nc |
---|
| 1913 | list_invert[${#list_invert[*]}]=${prefix_invert}_xt.nc |
---|
| 1914 | done |
---|
| 1915 | |
---|
| 1916 | # Concatenate |
---|
| 1917 | IGCM_sys_ncrcat ${list_invert[*]} histstn_xt.nc |
---|
| 1918 | |
---|
| 1919 | # Re-ivert file |
---|
| 1920 | IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x histstn_xt.nc ${file_out} |
---|
| 1921 | |
---|
| 1922 | # Station re-ordering is too expansive to be run within libICGM |
---|
| 1923 | # This is due to (ncpdq - nrcat - ncpdq) I/O sequence. |
---|
| 1924 | # This re-ordering must be done "in memory" by the cmorization process |
---|
| 1925 | # Anyway this is the best sequence using (ncpdq - nrcat - ncpdq) |
---|
| 1926 | # BEGIN reordering |
---|
| 1927 | |
---|
| 1928 | # Only LMDZ text output contains the exact ordering of the station. |
---|
| 1929 | # We isolate this in the code below: |
---|
| 1930 | # 0 38 -157.5000000000000 70.98591549295774 |
---|
| 1931 | # 0 54 27.49999999999999 67.18309859154928 |
---|
| 1932 | # 0 56 -62.50000000000001 82.39436619718309 |
---|
| 1933 | # 0 79 12.49999999999999 78.59154929577466 |
---|
| 1934 | # 0 116 -165.0000000000000 76.05633802816901 |
---|
| 1935 | # 0 117 130.0000000000000 70.98591549295774 |
---|
| 1936 | # 0 118 110.0000000000000 87.46478873239437 |
---|
| 1937 | # 1 40 4.999999999999995 51.97183098591550 |
---|
| 1938 | # typeset iStation iProc list_opt file_in file_out prefix_invert |
---|
| 1939 | # typeset -Z4 j4 |
---|
| 1940 | # typeset -Z3 j3 |
---|
| 1941 | |
---|
| 1942 | # unset list_opt |
---|
| 1943 | # set +A list_opt $@ |
---|
| 1944 | |
---|
| 1945 | # Filename after rebuild |
---|
| 1946 | # file_out=${list_opt[0]} |
---|
| 1947 | # Prefix of output files |
---|
| 1948 | # prefix_invert=$( basename ${file_out} .nc ) |
---|
| 1949 | # Number of procs |
---|
| 1950 | # num_proc=$( grep -i mpi_size ${PREFIX}_${Exe_Output} | wc -l ) |
---|
| 1951 | |
---|
| 1952 | # iProc=0 |
---|
| 1953 | # while [ ${iProc} -lt ${num_proc} ] ; do |
---|
| 1954 | # Array containing Station as a number |
---|
| 1955 | # unset proc_stn |
---|
| 1956 | # set +A proc_stn $( grep "iophy_mpi rank ip lon lat $iProc" ${PREFIX}_${Exe_Output} | sed -e "s/iophy_mpi rank ip lon lat //g" | awk ' {print $2}' ) |
---|
| 1957 | # Number of stations produced by processor proc |
---|
| 1958 | # stationLast=${#proc_stn[*]} |
---|
| 1959 | # Proc number on 4 digits |
---|
| 1960 | # j4=${iProc} |
---|
| 1961 | # Init |
---|
| 1962 | # iStation=0 |
---|
| 1963 | # while [ ${iStation} -lt ${stationLast} ] ; do |
---|
| 1964 | # Station number on 3 digits |
---|
| 1965 | # j3=${proc_stn[${iStation}]} |
---|
| 1966 | # Extract station |
---|
[725] | 1967 | # Invert Axis : t,x -> x,t |
---|
[697] | 1968 | # t,pres,x -> x,t,pres |
---|
| 1969 | # So that we can concatenate along x |
---|
| 1970 | # IGCM_sys_ncpdq -a x,time_counter -a x,time_counter,presnivs -d x,$iStation,$iStation ${prefix_invert}_${j4}.nc ${prefix_invert}_stn_${j3}.nc |
---|
| 1971 | # (( iStation = iStation + 1 )) |
---|
| 1972 | # done |
---|
| 1973 | # (( iProc = iProc + 1 )) |
---|
| 1974 | # done |
---|
| 1975 | |
---|
| 1976 | # Concatenate all station along x |
---|
| 1977 | # IGCM_sys_ncrcat ${prefix_invert}_stn_???.nc ${prefix_invert}_xt.nc |
---|
| 1978 | |
---|
| 1979 | # Re-invert file |
---|
| 1980 | # IGCM_sys_ncpdq -a time_counter,x -a time_counter,presnivs,x ${prefix_invert}_xt.nc ${file_out} |
---|
| 1981 | |
---|
| 1982 | # END reordering |
---|
| 1983 | |
---|
| 1984 | IGCM_debug_PopStack "IGCM_sys_rebuild_station" |
---|
| 1985 | } |
---|
| 1986 | |
---|
[222] | 1987 | ############################################################ |
---|
| 1988 | # Activate Running Environnment Variables |
---|
| 1989 | |
---|
| 1990 | function IGCM_sys_activ_variables { |
---|
[544] | 1991 | IGCM_debug_PushStack "IGCM_sys_activ_variables" |
---|
| 1992 | if ( $DEBUG_sys ) ; then |
---|
| 1993 | echo "IGCM_sys_activ_variables" |
---|
| 1994 | fi |
---|
[621] | 1995 | |
---|
| 1996 | ulimit -s unlimited |
---|
| 1997 | |
---|
[686] | 1998 | export KMP_STACKSIZE=3g |
---|
| 1999 | export KMP_LIBRARY=turnaround |
---|
| 2000 | export MKL_SERIAL=YES |
---|
| 2001 | unset MPI_PLACING_MODE |
---|
[623] | 2002 | |
---|
[687] | 2003 | # add module load nb of threads for core placement |
---|
| 2004 | (( max_omp = 0 )) |
---|
| 2005 | |
---|
| 2006 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2007 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2008 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 2009 | |
---|
| 2010 | # Only if we really have an executable for the component : |
---|
| 2011 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
| 2012 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
| 2013 | if [ ${comp_proc_omp_loc} -gt ${max_omp} ] ; then |
---|
| 2014 | (( max_omp = comp_proc_omp_loc )) |
---|
| 2015 | fi |
---|
| 2016 | fi |
---|
| 2017 | done |
---|
| 2018 | |
---|
| 2019 | ( [ X${max_omp} = X4 ] || [ X${max_omp} = X8 ] ) && { module load openmp/${max_omp}thds ; IGCM_debug_Print 1 "module load openmp/${max_omp}thds" ; } |
---|
| 2020 | |
---|
[544] | 2021 | IGCM_debug_PopStack "IGCM_sys_activ_variables" |
---|
[222] | 2022 | } |
---|
| 2023 | |
---|
| 2024 | ############################################################ |
---|
| 2025 | # Desactivate Running Environnment Variables |
---|
| 2026 | |
---|
| 2027 | function IGCM_sys_desactiv_variables { |
---|
[544] | 2028 | IGCM_debug_PushStack "IGCM_sys_desactiv_variables" |
---|
| 2029 | if ( $DEBUG_sys ) ; then |
---|
| 2030 | echo "IGCM_sys_desactiv_variables" |
---|
| 2031 | fi |
---|
| 2032 | IGCM_debug_PopStack "IGCM_sys_desactiv_variables" |
---|
[222] | 2033 | } |
---|
| 2034 | |
---|
| 2035 | ############################################################ |
---|
[621] | 2036 | # Build MPI/OMP scripts run file (dummy function) |
---|
[222] | 2037 | |
---|
| 2038 | function IGCM_sys_build_run_file { |
---|
[621] | 2039 | |
---|
| 2040 | IGCM_debug_Print 3 " dummy function : IGCM_sys_build_run_file " |
---|
| 2041 | |
---|
| 2042 | } |
---|
| 2043 | |
---|
| 2044 | ############################################################ |
---|
| 2045 | # Build MPI/OMP scripts |
---|
[623] | 2046 | function IGCM_sys_build_execution_scripts |
---|
[621] | 2047 | { |
---|
| 2048 | IGCM_debug_PushStack "IGCM_sys_build_execution_scripts" $@ |
---|
[544] | 2049 | if ( $DEBUG_sys ) ; then |
---|
[621] | 2050 | echo "IGCM_sys_build_execution_scripts " $@ |
---|
[544] | 2051 | fi |
---|
[623] | 2052 | typeset nodes listnodes init_node start_num init_exec comp ExeNameIn ExeNameOut |
---|
| 2053 | typeset node_num_current node_current comp_proc_mpi_loc comp_proc_omp_loc |
---|
[621] | 2054 | typeset num_corempi nombre_restant_node nombre_restant_comp |
---|
[687] | 2055 | typeset IGCM_OMP |
---|
[395] | 2056 | |
---|
[621] | 2057 | if [ ! -f ${SUBMIT_DIR}/Job_${config_UserChoices_JobName} ] ; then |
---|
| 2058 | IGCM_debug_Exit "IGCM_sys_titane build_execution_scripts : Job_${config_UserChoices_JobName} doesn't exist in SUBMIT_DIR : ${SUBMIT_DIR} " |
---|
| 2059 | fi |
---|
[395] | 2060 | |
---|
[621] | 2061 | if ( ${OK_PARA_MPMD} ) ; then |
---|
| 2062 | |
---|
| 2063 | if [ -f run_file ] ; then |
---|
| 2064 | IGCM_sys_Rm -f run_file |
---|
| 2065 | fi |
---|
| 2066 | touch run_file |
---|
| 2067 | |
---|
| 2068 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2069 | |
---|
| 2070 | # Hosts treatment |
---|
| 2071 | |
---|
| 2072 | ${HOST_MPIRUN_COMMAND} hostname | sort | uniq > hosts.tmp |
---|
[623] | 2073 | |
---|
[621] | 2074 | i=0 |
---|
| 2075 | rm -f hosts |
---|
| 2076 | IGCM_debug_Print 1 "sys Titane, Hosts avaible :" |
---|
| 2077 | for nodes in `cat hosts.tmp` ; do |
---|
| 2078 | host[$i]=$nodes |
---|
| 2079 | echo "${host[$i]} slots=8 max_slots=8" >> hosts |
---|
| 2080 | IGCM_debug_Print 1 ${host[$i]} |
---|
| 2081 | i=$((i+1)) |
---|
| 2082 | done |
---|
| 2083 | rm -f hosts.tmp |
---|
[623] | 2084 | |
---|
[621] | 2085 | listnodes=${host[*]} |
---|
[623] | 2086 | |
---|
| 2087 | EXECUTION="${HOST_MPIRUN_COMMAND} -hostfile hosts" |
---|
| 2088 | |
---|
[621] | 2089 | # Initialisation |
---|
| 2090 | |
---|
| 2091 | init_node=y |
---|
| 2092 | node_num_current=0 |
---|
| 2093 | start_num=0 |
---|
| 2094 | init_exec=n |
---|
| 2095 | |
---|
| 2096 | # Test : if oasis is there, we put it at the first position |
---|
[623] | 2097 | |
---|
[621] | 2098 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[623] | 2099 | |
---|
[621] | 2100 | if [ "X${comp}" = "XCPL" ] ; then |
---|
[623] | 2101 | |
---|
[621] | 2102 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2103 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[623] | 2104 | |
---|
[621] | 2105 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2106 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2107 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2108 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2109 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
| 2110 | echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
| 2111 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
[623] | 2112 | |
---|
[621] | 2113 | init_node=n |
---|
[623] | 2114 | |
---|
[621] | 2115 | (( nombre_restant_node = NUM_COREPERNODE - 1 )) |
---|
| 2116 | node_num_current=0 |
---|
| 2117 | node_current=${host[${node_num_current}]} |
---|
[623] | 2118 | |
---|
| 2119 | EXECUTION="${EXECUTION} -H ${node_current} -np 1 ./script_${ExeNameOut}.ksh" |
---|
| 2120 | |
---|
[621] | 2121 | init_exec=y |
---|
| 2122 | start_num=1 |
---|
[623] | 2123 | |
---|
[621] | 2124 | fi |
---|
[623] | 2125 | |
---|
[621] | 2126 | done |
---|
[623] | 2127 | |
---|
[621] | 2128 | # Then loop on the components (except for oasis) |
---|
| 2129 | |
---|
| 2130 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[623] | 2131 | |
---|
[621] | 2132 | eval ExeNameIn=\${config_Executable_${comp}[0]} |
---|
| 2133 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[623] | 2134 | |
---|
[621] | 2135 | # Only if we really have an executable for the component : |
---|
| 2136 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 2137 | |
---|
| 2138 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2139 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[623] | 2140 | |
---|
[621] | 2141 | echo "#!/bin/ksh" > script_${ExeNameOut}.ksh |
---|
| 2142 | # echo "set -vx" >> script_${ExeNameOut}.ksh |
---|
| 2143 | echo "" >> script_${ExeNameOut}.ksh |
---|
| 2144 | echo "export KMP_STACKSIZE=3g" >> script_${ExeNameOut}.ksh |
---|
| 2145 | echo "export KMP_LIBRARY=turnaround" >> script_${ExeNameOut}.ksh |
---|
| 2146 | echo "export MKL_SERIAL=YES" >> script_${ExeNameOut}.ksh |
---|
[686] | 2147 | echo "export OMP_NUM_THREADS=${comp_proc_omp_loc}" >> script_${ExeNameOut}.ksh |
---|
[621] | 2148 | echo "(( MYMPIRANK = OMPI_COMM_WORLD_RANK - ${start_num})) " >> script_${ExeNameOut}.ksh |
---|
| 2149 | echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${MYMPIRANK} 2>out_${ExeNameOut}.err.\${MYMPIRANK}" >> script_${ExeNameOut}.ksh |
---|
| 2150 | IGCM_sys_Chmod u+x script_${ExeNameOut}.ksh |
---|
[623] | 2151 | |
---|
[621] | 2152 | node_num=0 |
---|
| 2153 | |
---|
[623] | 2154 | # We define the number of MPI process to be assigned for the component |
---|
| 2155 | |
---|
[621] | 2156 | nombre_restant_comp=${comp_proc_mpi_loc} |
---|
[623] | 2157 | |
---|
[621] | 2158 | # Loop on the allocated nodes |
---|
| 2159 | |
---|
| 2160 | for node in ${listnodes} ; do |
---|
| 2161 | |
---|
| 2162 | # We go to the current node |
---|
| 2163 | if [ ${node_num} = ${node_num_current} ] ; then |
---|
| 2164 | |
---|
[623] | 2165 | node_current=${host[${node_num_current}]} |
---|
[621] | 2166 | |
---|
[623] | 2167 | # If first time on the node : initialisation |
---|
[621] | 2168 | |
---|
| 2169 | if [ ${init_node} = y ] ; then |
---|
| 2170 | nombre_restant_node=${NUM_COREPERNODE} |
---|
[623] | 2171 | fi |
---|
| 2172 | |
---|
[621] | 2173 | # Test on the number of OMP threads |
---|
| 2174 | |
---|
[623] | 2175 | if [ ${comp_proc_omp_loc} -gt ${nombre_restant_node} ] ; then |
---|
[621] | 2176 | (( node_num = node_num + 1 )) |
---|
| 2177 | node_num_current=${node_num} |
---|
| 2178 | init_node=y |
---|
| 2179 | continue |
---|
| 2180 | fi |
---|
| 2181 | |
---|
| 2182 | # Number of MPI process to assign |
---|
| 2183 | |
---|
| 2184 | (( num_corempi = nombre_restant_node / comp_proc_omp_loc )) |
---|
[623] | 2185 | |
---|
| 2186 | if [ ${num_corempi} -gt ${nombre_restant_comp} ] ; then |
---|
[621] | 2187 | num_corempi=${nombre_restant_comp} |
---|
| 2188 | fi |
---|
| 2189 | |
---|
| 2190 | (( nombre_restant_node = nombre_restant_node - num_corempi * comp_proc_omp_loc )) |
---|
[623] | 2191 | (( nombre_restant_comp = nombre_restant_comp - num_corempi )) |
---|
| 2192 | |
---|
| 2193 | if [ ${init_exec} = y ] ; then |
---|
[621] | 2194 | EXECUTION="${EXECUTION} : -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
[623] | 2195 | else |
---|
[621] | 2196 | EXECUTION="${EXECUTION} -H ${node_current} -np ${num_corempi} ./script_${ExeNameOut}.ksh" |
---|
| 2197 | init_exec=y |
---|
| 2198 | fi |
---|
| 2199 | |
---|
| 2200 | (( start_num = num_corempi + start_num )) |
---|
[623] | 2201 | |
---|
[621] | 2202 | else |
---|
[623] | 2203 | |
---|
| 2204 | (( node_num = node_num + 1 )) |
---|
| 2205 | continue |
---|
[621] | 2206 | fi |
---|
[623] | 2207 | |
---|
| 2208 | # Test on the number of core/process remaining on the node/component |
---|
| 2209 | |
---|
[621] | 2210 | if [ ${nombre_restant_node} = 0 ] ; then |
---|
| 2211 | (( node_num = node_num + 1 )) |
---|
[623] | 2212 | node_num_current=${node_num} |
---|
| 2213 | init_node=y |
---|
[621] | 2214 | |
---|
| 2215 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 2216 | break 1 |
---|
| 2217 | fi |
---|
| 2218 | else |
---|
| 2219 | |
---|
| 2220 | node_num_current=${node_num} |
---|
[623] | 2221 | init_node=n |
---|
| 2222 | |
---|
| 2223 | if [ ${nombre_restant_comp} = 0 ] ; then |
---|
| 2224 | break 1 |
---|
| 2225 | fi |
---|
[621] | 2226 | fi |
---|
| 2227 | done |
---|
| 2228 | fi |
---|
| 2229 | done |
---|
[623] | 2230 | |
---|
[621] | 2231 | else |
---|
| 2232 | |
---|
| 2233 | # Then first loop on the components for the coupler ie oasis |
---|
| 2234 | |
---|
| 2235 | ## the coupler ie oasis must be the first one |
---|
[623] | 2236 | for comp in ${config_ListOfComponents[*]} ; do |
---|
[621] | 2237 | |
---|
[623] | 2238 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 2239 | |
---|
| 2240 | # for CPL component only |
---|
| 2241 | if [ "X${comp}" = "XCPL" ] ; then |
---|
| 2242 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
| 2243 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut} " >> run_file |
---|
| 2244 | fi |
---|
| 2245 | done |
---|
| 2246 | |
---|
[621] | 2247 | # Then second loop on the components |
---|
| 2248 | |
---|
[623] | 2249 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2250 | |
---|
| 2251 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
| 2252 | |
---|
[621] | 2253 | # Only if we really have an executable for the component and not the coupler ie oasis: |
---|
[623] | 2254 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${comp}" != "XCPL" ] ) ; then |
---|
| 2255 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[629] | 2256 | echo "-np ${comp_proc_mpi_loc} ./${ExeNameOut}" >> run_file |
---|
[623] | 2257 | fi |
---|
| 2258 | done |
---|
| 2259 | IGCM_sys_Chmod u+x run_file |
---|
[621] | 2260 | |
---|
[623] | 2261 | EXECUTION="${HOST_MPIRUN_COMMAND} --app ./run_file" |
---|
| 2262 | |
---|
[621] | 2263 | fi |
---|
| 2264 | |
---|
[725] | 2265 | else # Only one executable. |
---|
[690] | 2266 | # Check has to be added with : |
---|
[687] | 2267 | # Job : |
---|
| 2268 | # #MSUB -n 8 # reservation des processeurs pour le job |
---|
| 2269 | # #MSUB -N 4 # reservation des nodes pour le job |
---|
| 2270 | # BATCH_NUM_PROC_TOT=32 |
---|
| 2271 | # |
---|
| 2272 | # config.card : |
---|
| 2273 | # ATM= (gcm.e, lmdz.x, 8MPI, 4OMP) |
---|
[690] | 2274 | # |
---|
| 2275 | # tested with : |
---|
| 2276 | # Job : |
---|
| 2277 | # #MSUB -n 32 |
---|
| 2278 | # BATCH_NUM_PROC_TOT=32 |
---|
| 2279 | # |
---|
| 2280 | # config.card : |
---|
| 2281 | # ATM= (gcm.e, lmdz.x) |
---|
[621] | 2282 | |
---|
[690] | 2283 | |
---|
[621] | 2284 | for comp in ${config_ListOfComponents[*]} ; do |
---|
| 2285 | |
---|
| 2286 | # Only if we really have an executable for the component : |
---|
[623] | 2287 | eval ExeNameOut=\${config_Executable_${comp}[1]} |
---|
[664] | 2288 | ### if ( [ "X${ExeNameOut}" != X\"\" ] ) ; then |
---|
[662] | 2289 | if ( [ "X${ExeNameOut}" != X\"\" ] && [ "X${ExeNameOut}" != "Xinca.dat" ] ) ; then |
---|
[623] | 2290 | |
---|
[687] | 2291 | IGCM_OMP=1 |
---|
| 2292 | |
---|
[623] | 2293 | if ( ${OK_PARA_OMP} ) ; then |
---|
| 2294 | eval comp_proc_omp_loc=\${${comp}_PROC_OMP} |
---|
[686] | 2295 | export OMP_NUM_THREADS=${comp_proc_omp_loc} |
---|
[687] | 2296 | IGCMG_OMP=${comp_proc_omp_loc} |
---|
[623] | 2297 | fi |
---|
| 2298 | if ( ${OK_PARA_MPI} ) ; then |
---|
[686] | 2299 | eval comp_proc_mpi_loc=\${${comp}_PROC_MPI} |
---|
[621] | 2300 | # Default : mpirun used if nb_proc gt 1 |
---|
[686] | 2301 | # pour sortie out/err par process ? more test required |
---|
[623] | 2302 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out.\${OMPI_COMM_WORLD_RANK} 2>out_${ExeNameOut}.err.\${OMPI_COMM_WORLD_RANK}" >> script_${ExeNameOut}.ksh |
---|
[686] | 2303 | EXECUTION="${HOST_MPIRUN_COMMAND} -np ${comp_proc_mpi_loc} ./${ExeNameOut}" |
---|
[623] | 2304 | else |
---|
[687] | 2305 | # Check if BATCH_NUM_PROC_TOT = IGCMG_OMP |
---|
| 2306 | if ( [ ${IGCM_OMP} -ne ${BATCH_NUM_PROC_TOT} ] ) ; then |
---|
| 2307 | IGCM_debug_Print 1 "sys Titane : BATCH_NUM_PROC_TOT <> ${comp}_PROC_OMP : ${BATCH_NUM_PROC_TOT} <> ${BRIDGE_MSUB_NPROC} " |
---|
| 2308 | IGCM_debug_Print 1 "sys Titane : Check #MSUB -n xx into Job" |
---|
| 2309 | IGCM_debug_Exit "IGCM_sys_build_execution_scripts" |
---|
| 2310 | fi |
---|
[623] | 2311 | # Default : mpirun is NOT used if nb_proc eq 1 |
---|
[686] | 2312 | # pour sortie out/err par process ? more test required |
---|
[623] | 2313 | # echo "./${ExeNameOut} > out_${ExeNameOut}.out 2>out_${ExeNameOut}.err" >> script_${ExeNameOut}.ksh |
---|
[687] | 2314 | EXECUTION="/usr/bin/time ./${ExeNameOut}" |
---|
[623] | 2315 | fi |
---|
| 2316 | fi |
---|
[621] | 2317 | done |
---|
[623] | 2318 | |
---|
[544] | 2319 | fi |
---|
[621] | 2320 | |
---|
| 2321 | IGCM_debug_Print 1 "sys Titane : La commande d execution est " |
---|
[686] | 2322 | IGCM_debug_Print 1 "$EXECUTION" |
---|
[621] | 2323 | |
---|
| 2324 | IGCM_debug_PopStack "IGCM_sys_build_execution_scripts" |
---|
[222] | 2325 | } |
---|
[451] | 2326 | |
---|
[651] | 2327 | ############################################################ |
---|
| 2328 | # Check of space available on temporary filesytems |
---|
| 2329 | function IGCM_sys_check_quota { |
---|
| 2330 | IGCM_debug_PushStack "IGCM_sys_check_quota" |
---|
| 2331 | if ( $DEBUG_sys ) ; then |
---|
| 2332 | echo "IGCM_sys_check_quota " |
---|
| 2333 | fi |
---|
| 2334 | # Limit of quota (in %) |
---|
| 2335 | limit_quota=90 |
---|
| 2336 | |
---|
| 2337 | # Check of the volume |
---|
| 2338 | volume_quota=$(ccc_quota | grep ' scratch' | awk '{print $2}') |
---|
| 2339 | volume_avail=$(ccc_quota | grep ' scratch' | awk '{print $3}') |
---|
| 2340 | |
---|
| 2341 | if ( [ ! X${volume_quota} = X ] && [ ! ${volume_quota} = "-" ] ) ; then |
---|
| 2342 | |
---|
| 2343 | unit_avail=${volume_avail: -1} |
---|
| 2344 | unit_quota=${volume_quota: -1} |
---|
| 2345 | |
---|
[696] | 2346 | if [ "${unit_quota}" = "*" ] ; then |
---|
[725] | 2347 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
| 2348 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2349 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2350 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2351 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2352 | IGCM_debug_Verif_Exit |
---|
[696] | 2353 | fi |
---|
| 2354 | |
---|
[651] | 2355 | temp_avail=${volume_avail%%${volume_avail: -1}*} |
---|
| 2356 | temp_quota=${volume_quota%%${volume_quota: -1}*} |
---|
| 2357 | |
---|
| 2358 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2359 | |
---|
| 2360 | # Convertion |
---|
| 2361 | if [ ${volume_avail: -1} = "T" ] ; then |
---|
| 2362 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2363 | elif [ ${volume_avail: -1} = "G" ] ; then |
---|
| 2364 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2365 | elif [ ${volume_avail: -1} = "M" ] ; then |
---|
| 2366 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2367 | elif [ ${volume_avail: -1} = "k" ] ; then |
---|
| 2368 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2369 | else |
---|
| 2370 | (( temp_avail = volume_avail )) |
---|
| 2371 | fi |
---|
| 2372 | if [ ${volume_quota: -1} = "T" ] ; then |
---|
| 2373 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2374 | elif [ ${volume_quota: -1} = "G" ] ; then |
---|
| 2375 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2376 | elif [ ${volume_quota: -1} = "M" ] ; then |
---|
| 2377 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2378 | elif [ ${volume_quota: -1} = "k" ] ; then |
---|
| 2379 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2380 | else |
---|
| 2381 | (( temp_quota = volume_quota )) |
---|
| 2382 | fi |
---|
| 2383 | fi |
---|
| 2384 | |
---|
| 2385 | quota_volume=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2386 | # echo "volume ratio is " $quota_volume |
---|
| 2387 | |
---|
| 2388 | if [ ${quota_volume} -ge ${limit_quota} ] ; then |
---|
| 2389 | IGCM_debug_Print 1 "Please, check your quota of volume on scratch" |
---|
[654] | 2390 | IGCM_debug_Print 1 "${quota_volume}% of your quota is used" |
---|
| 2391 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
[651] | 2392 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2393 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2394 | IGCM_debug_Verif_Exit |
---|
| 2395 | fi |
---|
| 2396 | |
---|
| 2397 | fi |
---|
| 2398 | |
---|
| 2399 | # Check of the number of inodes |
---|
| 2400 | |
---|
| 2401 | inode_quota=$(ccc_quota | grep ' scratch' | awk '{print $6}') |
---|
| 2402 | inode_avail=$(ccc_quota | grep ' scratch' | awk '{print $7}') |
---|
| 2403 | |
---|
| 2404 | if ( [ ! X${inode_quota} = X ] && [ ! ${inode_quota} = "-" ] ) ; then |
---|
| 2405 | |
---|
| 2406 | unit_avail=${inode_avail: -1} |
---|
| 2407 | unit_quota=${inode_quota: -1} |
---|
| 2408 | |
---|
[696] | 2409 | if [ "${unit_quota}" = "*" ] ; then |
---|
[725] | 2410 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
| 2411 | IGCM_debug_Print 1 "More than 100% of your quota is used" |
---|
| 2412 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
| 2413 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2414 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2415 | IGCM_debug_Verif_Exit |
---|
[696] | 2416 | fi |
---|
| 2417 | |
---|
[651] | 2418 | temp_avail=${inode_avail%%${inode_avail: -1}*} |
---|
| 2419 | temp_quota=${inode_quota%%${inode_quota: -1}*} |
---|
| 2420 | |
---|
| 2421 | if [ ! ${unit_avail} = ${unit_quota} ] ; then |
---|
| 2422 | |
---|
| 2423 | # Convertion |
---|
| 2424 | if [ ${inode_avail: -1} = "T" ] ; then |
---|
| 2425 | (( temp_avail = temp_avail * 1000000000000 )) |
---|
| 2426 | elif [ ${inode_avail: -1} = "G" ] ; then |
---|
| 2427 | (( temp_avail = temp_avail * 1000000000 )) |
---|
| 2428 | elif [ ${inode_avail: -1} = "M" ] ; then |
---|
| 2429 | (( temp_avail = temp_avail * 1000000 )) |
---|
| 2430 | elif [ ${inode_avail: -1} = "k" ] ; then |
---|
| 2431 | (( temp_avail = temp_avail * 1000 )) |
---|
| 2432 | else |
---|
| 2433 | (( temp_avail = inode_avail )) |
---|
| 2434 | fi |
---|
| 2435 | |
---|
| 2436 | if [ ${inode_quota: -1} = "T" ] ; then |
---|
| 2437 | (( temp_quota = temp_quota * 1000000000000 )) |
---|
| 2438 | elif [ ${inode_quota: -1} = "G" ] ; then |
---|
| 2439 | (( temp_quota = temp_quota * 1000000000 )) |
---|
| 2440 | elif [ ${inode_quota: -1} = "M" ] ; then |
---|
| 2441 | (( temp_quota = temp_quota * 1000000 )) |
---|
| 2442 | elif [ ${inode_quota: -1} = "k" ] ; then |
---|
| 2443 | (( temp_quota = temp_quota * 1000 )) |
---|
| 2444 | else |
---|
| 2445 | (( temp_quota = inode_quota )) |
---|
| 2446 | fi |
---|
| 2447 | fi |
---|
| 2448 | quota_inode=$(echo "scale=2 ; $temp_quota/$temp_avail*100" | bc) |
---|
| 2449 | # echo "inode ratio is " $quota_inode |
---|
| 2450 | |
---|
| 2451 | if [ ${quota_inode} -ge ${limit_quota} ] ; then |
---|
| 2452 | IGCM_debug_Print 1 "Please, check your quota of inode on scratch" |
---|
[654] | 2453 | IGCM_debug_Print 1 "${quota_inode}% of your quota is used" |
---|
| 2454 | IGCM_debug_Print 1 "Use the ccc_quota command to check" |
---|
[651] | 2455 | IGCM_debug_Print 1 "You must have more than 10% available to run" |
---|
| 2456 | IGCM_debug_Exit "Not enough space to run ! STOP HERE" |
---|
| 2457 | IGCM_debug_Verif_Exit |
---|
| 2458 | fi |
---|
| 2459 | |
---|
| 2460 | fi |
---|
| 2461 | IGCM_debug_PopStack "IGCM_sys_check_quota" |
---|
| 2462 | } |
---|
| 2463 | |
---|
[451] | 2464 | ############################################################## |
---|
| 2465 | # NCO OPERATOR |
---|
| 2466 | |
---|
[544] | 2467 | function IGCM_sys_ncap2 { |
---|
| 2468 | IGCM_debug_PushStack "IGCM_sys_ncap2" -- $@ |
---|
| 2469 | if ( $DEBUG_sys ) ; then |
---|
| 2470 | echo "IGCM_sys_ncap2 :" $@ |
---|
| 2471 | fi |
---|
[714] | 2472 | |
---|
| 2473 | typeset NB_ESSAI DELAI status i |
---|
| 2474 | # number of tentative |
---|
| 2475 | NB_ESSAI=3 |
---|
| 2476 | # time delay between tentative |
---|
| 2477 | DELAI=2 |
---|
| 2478 | |
---|
| 2479 | i=0 |
---|
| 2480 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2481 | ncap2 "$@" > out_rsync 2>&1 |
---|
| 2482 | status=$? |
---|
| 2483 | if [ ${status} -gt 0 ] ; then |
---|
| 2484 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : error code ${status}" |
---|
| 2485 | cat out_rsync |
---|
| 2486 | \rm out_rsync |
---|
| 2487 | IGCM_debug_Print 2 "IGCM_sys_ncap2 : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2488 | sleep $DELAI |
---|
[714] | 2489 | else |
---|
| 2490 | \rm out_rsync |
---|
| 2491 | break |
---|
| 2492 | fi |
---|
| 2493 | (( i = i + 1 )) |
---|
| 2494 | done |
---|
| 2495 | |
---|
| 2496 | if [ ${status} -gt 0 ] ; then |
---|
| 2497 | echo "IGCM_sys_ncap2 : ncap2 error" |
---|
| 2498 | IGCM_debug_Exit "ncap2" |
---|
[544] | 2499 | fi |
---|
| 2500 | |
---|
| 2501 | IGCM_debug_PopStack "IGCM_sys_ncap2" |
---|
| 2502 | } |
---|
| 2503 | |
---|
[451] | 2504 | function IGCM_sys_ncatted { |
---|
[544] | 2505 | IGCM_debug_PushStack "IGCM_sys_ncatted" -- $@ |
---|
| 2506 | if ( $DEBUG_sys ) ; then |
---|
| 2507 | echo "IGCM_sys_ncatted :" $@ |
---|
| 2508 | fi |
---|
[714] | 2509 | |
---|
| 2510 | typeset NB_ESSAI DELAI status i |
---|
| 2511 | # number of tentative |
---|
| 2512 | NB_ESSAI=3 |
---|
| 2513 | # time delay between tentative |
---|
| 2514 | DELAI=2 |
---|
| 2515 | |
---|
| 2516 | i=0 |
---|
| 2517 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2518 | ncatted "$@" > out_rsync 2>&1 |
---|
| 2519 | status=$? |
---|
| 2520 | if [ ${status} -gt 0 ] ; then |
---|
| 2521 | IGCM_debug_Print 2 "IGCM_sys_ncatted : error code ${status}" |
---|
| 2522 | cat out_rsync |
---|
| 2523 | \rm out_rsync |
---|
| 2524 | IGCM_debug_Print 2 "IGCM_sys_ncatted : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2525 | sleep $DELAI |
---|
[714] | 2526 | else |
---|
| 2527 | \rm out_rsync |
---|
| 2528 | break |
---|
| 2529 | fi |
---|
| 2530 | (( i = i + 1 )) |
---|
| 2531 | done |
---|
| 2532 | |
---|
| 2533 | if [ ${status} -gt 0 ] ; then |
---|
| 2534 | echo "IGCM_sys_ncatted : ncatted error" |
---|
| 2535 | IGCM_debug_Exit "ncatted" |
---|
[544] | 2536 | fi |
---|
[451] | 2537 | |
---|
[544] | 2538 | IGCM_debug_PopStack "IGCM_sys_ncatted" |
---|
[451] | 2539 | } |
---|
| 2540 | |
---|
| 2541 | function IGCM_sys_ncbo { |
---|
[544] | 2542 | IGCM_debug_PushStack "IGCM_sys_ncbo" -- $@ |
---|
| 2543 | if ( $DEBUG_sys ) ; then |
---|
| 2544 | echo "IGCM_sys_ncbo :" $@ |
---|
| 2545 | fi |
---|
[714] | 2546 | |
---|
| 2547 | typeset NB_ESSAI DELAI status i |
---|
| 2548 | # number of tentative |
---|
| 2549 | NB_ESSAI=3 |
---|
| 2550 | # time delay between tentative |
---|
| 2551 | DELAI=2 |
---|
| 2552 | |
---|
| 2553 | i=0 |
---|
| 2554 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2555 | ncbo $@ > out_rsync 2>&1 |
---|
| 2556 | status=$? |
---|
| 2557 | if [ ${status} -gt 0 ] ; then |
---|
| 2558 | IGCM_debug_Print 2 "IGCM_sys_ncbo : error code ${status}" |
---|
| 2559 | cat out_rsync |
---|
| 2560 | \rm out_rsync |
---|
| 2561 | IGCM_debug_Print 2 "IGCM_sys_ncbo : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2562 | sleep $DELAI |
---|
[714] | 2563 | else |
---|
| 2564 | \rm out_rsync |
---|
| 2565 | break |
---|
| 2566 | fi |
---|
| 2567 | (( i = i + 1 )) |
---|
| 2568 | done |
---|
| 2569 | |
---|
| 2570 | if [ ${status} -gt 0 ] ; then |
---|
| 2571 | echo "IGCM_sys_ncbo : ncbo error" |
---|
| 2572 | IGCM_debug_Exit "ncbo" |
---|
[544] | 2573 | fi |
---|
[451] | 2574 | |
---|
[544] | 2575 | IGCM_debug_PopStack "IGCM_sys_ncbo" |
---|
[451] | 2576 | } |
---|
| 2577 | |
---|
| 2578 | function IGCM_sys_ncdiff { |
---|
[544] | 2579 | IGCM_debug_PushStack "IGCM_sys_ncdiff" -- $@ |
---|
| 2580 | if ( $DEBUG_sys ) ; then |
---|
| 2581 | echo "IGCM_sys_ncdiff :" $@ |
---|
| 2582 | fi |
---|
[714] | 2583 | |
---|
| 2584 | typeset NB_ESSAI DELAI status i |
---|
| 2585 | # number of tentative |
---|
| 2586 | NB_ESSAI=3 |
---|
| 2587 | # time delay between tentative |
---|
| 2588 | DELAI=2 |
---|
| 2589 | |
---|
| 2590 | i=0 |
---|
| 2591 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2592 | ncdiff $@ > out_rsync 2>&1 |
---|
| 2593 | status=$? |
---|
| 2594 | if [ ${status} -gt 0 ] ; then |
---|
| 2595 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : error code ${status}" |
---|
| 2596 | cat out_rsync |
---|
| 2597 | \rm out_rsync |
---|
| 2598 | IGCM_debug_Print 2 "IGCM_sys_ncdiff : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2599 | sleep $DELAI |
---|
[714] | 2600 | else |
---|
| 2601 | \rm out_rsync |
---|
| 2602 | break |
---|
| 2603 | fi |
---|
| 2604 | (( i = i + 1 )) |
---|
| 2605 | done |
---|
| 2606 | |
---|
| 2607 | if [ ${status} -gt 0 ] ; then |
---|
| 2608 | echo "IGCM_sys_ncdiff : ncdiff error" |
---|
| 2609 | IGCM_debug_Exit "ncdiff" |
---|
[544] | 2610 | fi |
---|
[451] | 2611 | |
---|
[544] | 2612 | IGCM_debug_PopStack "IGCM_sys_ncdiff" |
---|
[451] | 2613 | } |
---|
| 2614 | |
---|
| 2615 | function IGCM_sys_ncea { |
---|
[544] | 2616 | IGCM_debug_PushStack "IGCM_sys_ncea" -- $@ |
---|
| 2617 | if ( $DEBUG_sys ) ; then |
---|
| 2618 | echo "IGCM_sys_ncea :" $@ |
---|
| 2619 | fi |
---|
[714] | 2620 | |
---|
| 2621 | typeset NB_ESSAI DELAI status i |
---|
| 2622 | # number of tentative |
---|
| 2623 | NB_ESSAI=3 |
---|
| 2624 | # time delay between tentative |
---|
| 2625 | DELAI=2 |
---|
| 2626 | |
---|
| 2627 | i=0 |
---|
| 2628 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2629 | ncea $@ > out_rsync 2>&1 |
---|
| 2630 | status=$? |
---|
| 2631 | if [ ${status} -gt 0 ] ; then |
---|
| 2632 | IGCM_debug_Print 2 "IGCM_sys_ncea : error code ${status}" |
---|
| 2633 | cat out_rsync |
---|
| 2634 | \rm out_rsync |
---|
| 2635 | IGCM_debug_Print 2 "IGCM_sys_ncea : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2636 | sleep $DELAI |
---|
[714] | 2637 | else |
---|
| 2638 | \rm out_rsync |
---|
| 2639 | break |
---|
| 2640 | fi |
---|
| 2641 | (( i = i + 1 )) |
---|
| 2642 | done |
---|
| 2643 | |
---|
| 2644 | if [ ${status} -gt 0 ] ; then |
---|
| 2645 | echo "IGCM_sys_ncea : ncea error" |
---|
| 2646 | IGCM_debug_Exit "ncea" |
---|
[544] | 2647 | fi |
---|
[451] | 2648 | |
---|
[544] | 2649 | IGCM_debug_PopStack "IGCM_sys_ncea" |
---|
[451] | 2650 | } |
---|
| 2651 | |
---|
| 2652 | function IGCM_sys_ncecat { |
---|
[544] | 2653 | IGCM_debug_PushStack "IGCM_sys_ncecat" -- $@ |
---|
| 2654 | if ( $DEBUG_sys ) ; then |
---|
| 2655 | echo "IGCM_sys_ncecat :" $@ |
---|
| 2656 | fi |
---|
[714] | 2657 | |
---|
| 2658 | typeset NB_ESSAI DELAI status i |
---|
| 2659 | # number of tentative |
---|
| 2660 | NB_ESSAI=3 |
---|
| 2661 | # time delay between tentative |
---|
| 2662 | DELAI=2 |
---|
| 2663 | |
---|
| 2664 | i=0 |
---|
| 2665 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2666 | ncecat $@ > out_rsync 2>&1 |
---|
| 2667 | status=$? |
---|
| 2668 | if [ ${status} -gt 0 ] ; then |
---|
| 2669 | IGCM_debug_Print 2 "IGCM_sys_ncecat : error code ${status}" |
---|
| 2670 | cat out_rsync |
---|
| 2671 | \rm out_rsync |
---|
| 2672 | IGCM_debug_Print 2 "IGCM_sys_ncecat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2673 | sleep $DELAI |
---|
[714] | 2674 | else |
---|
| 2675 | \rm out_rsync |
---|
| 2676 | break |
---|
| 2677 | fi |
---|
| 2678 | (( i = i + 1 )) |
---|
| 2679 | done |
---|
| 2680 | |
---|
| 2681 | if [ ${status} -gt 0 ] ; then |
---|
| 2682 | echo "IGCM_sys_ncecat : ncecat error" |
---|
| 2683 | IGCM_debug_Exit "ncecat" |
---|
[544] | 2684 | fi |
---|
[451] | 2685 | |
---|
[544] | 2686 | IGCM_debug_PopStack "IGCM_sys_ncecat" |
---|
[451] | 2687 | } |
---|
| 2688 | |
---|
| 2689 | function IGCM_sys_ncflint { |
---|
[544] | 2690 | IGCM_debug_PushStack "IGCM_sys_ncflint" -- $@ |
---|
| 2691 | if ( $DEBUG_sys ) ; then |
---|
| 2692 | echo "IGCM_sys_ncflint :" $@ |
---|
| 2693 | fi |
---|
[714] | 2694 | |
---|
| 2695 | typeset NB_ESSAI DELAI status i |
---|
| 2696 | # number of tentative |
---|
| 2697 | NB_ESSAI=3 |
---|
| 2698 | # time delay between tentative |
---|
| 2699 | DELAI=2 |
---|
| 2700 | |
---|
| 2701 | i=0 |
---|
| 2702 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2703 | ncflint $@ > out_rsync 2>&1 |
---|
| 2704 | status=$? |
---|
| 2705 | if [ ${status} -gt 0 ] ; then |
---|
| 2706 | IGCM_debug_Print 2 "IGCM_sys_ncflint : error code ${status}" |
---|
| 2707 | cat out_rsync |
---|
| 2708 | \rm out_rsync |
---|
| 2709 | IGCM_debug_Print 2 "IGCM_sys_ncflint : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2710 | sleep $DELAI |
---|
[714] | 2711 | else |
---|
| 2712 | \rm out_rsync |
---|
| 2713 | break |
---|
| 2714 | fi |
---|
| 2715 | (( i = i + 1 )) |
---|
| 2716 | done |
---|
| 2717 | |
---|
| 2718 | if [ ${status} -gt 0 ] ; then |
---|
| 2719 | echo "IGCM_sys_ncflint : ncflint error" |
---|
| 2720 | IGCM_debug_Exit "ncflint" |
---|
[544] | 2721 | fi |
---|
[451] | 2722 | |
---|
[544] | 2723 | IGCM_debug_PopStack "IGCM_sys_ncflint" |
---|
[451] | 2724 | } |
---|
| 2725 | |
---|
| 2726 | function IGCM_sys_ncks { |
---|
[544] | 2727 | IGCM_debug_PushStack "IGCM_sys_ncks" -- $@ |
---|
| 2728 | if ( $DEBUG_sys ) ; then |
---|
| 2729 | echo "IGCM_sys_ncks :" $@ |
---|
| 2730 | fi |
---|
[714] | 2731 | |
---|
| 2732 | typeset NB_ESSAI DELAI status i |
---|
| 2733 | # number of tentative |
---|
| 2734 | NB_ESSAI=3 |
---|
| 2735 | # time delay between tentative |
---|
| 2736 | DELAI=2 |
---|
| 2737 | |
---|
| 2738 | i=0 |
---|
| 2739 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2740 | ncks $@ > out_rsync 2>&1 |
---|
| 2741 | status=$? |
---|
| 2742 | if [ ${status} -gt 0 ] ; then |
---|
| 2743 | IGCM_debug_Print 2 "IGCM_sys_ncks : error code ${status}" |
---|
| 2744 | cat out_rsync |
---|
| 2745 | \rm out_rsync |
---|
| 2746 | IGCM_debug_Print 2 "IGCM_sys_ncks : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2747 | sleep $DELAI |
---|
[714] | 2748 | else |
---|
| 2749 | \rm out_rsync |
---|
| 2750 | break |
---|
| 2751 | fi |
---|
| 2752 | (( i = i + 1 )) |
---|
| 2753 | done |
---|
| 2754 | |
---|
| 2755 | if [ ${status} -gt 0 ] ; then |
---|
| 2756 | echo "IGCM_sys_ncks : ncks error" |
---|
| 2757 | IGCM_debug_Exit "ncks" |
---|
[544] | 2758 | fi |
---|
[451] | 2759 | |
---|
[544] | 2760 | IGCM_debug_PopStack "IGCM_sys_ncks" |
---|
[451] | 2761 | } |
---|
| 2762 | |
---|
| 2763 | function IGCM_sys_ncpdq { |
---|
[544] | 2764 | IGCM_debug_PushStack "IGCM_sys_ncpdq" -- $@ |
---|
| 2765 | if ( $DEBUG_sys ) ; then |
---|
| 2766 | echo "IGCM_sys_ncpdq :" $@ |
---|
| 2767 | fi |
---|
[714] | 2768 | |
---|
| 2769 | typeset NB_ESSAI DELAI status i |
---|
| 2770 | # number of tentative |
---|
| 2771 | NB_ESSAI=3 |
---|
| 2772 | # time delay between tentative |
---|
| 2773 | DELAI=2 |
---|
| 2774 | |
---|
| 2775 | i=0 |
---|
| 2776 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2777 | ncpdq $@ > out_rsync 2>&1 |
---|
| 2778 | status=$? |
---|
| 2779 | if [ ${status} -gt 0 ] ; then |
---|
| 2780 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : error code ${status}" |
---|
| 2781 | cat out_rsync |
---|
| 2782 | \rm out_rsync |
---|
| 2783 | IGCM_debug_Print 2 "IGCM_sys_ncpdq : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2784 | sleep $DELAI |
---|
[714] | 2785 | else |
---|
| 2786 | \rm out_rsync |
---|
| 2787 | break |
---|
| 2788 | fi |
---|
| 2789 | (( i = i + 1 )) |
---|
| 2790 | done |
---|
| 2791 | |
---|
| 2792 | if [ ${status} -gt 0 ] ; then |
---|
| 2793 | echo "IGCM_sys_ncpdq : ncpdq error" |
---|
| 2794 | IGCM_debug_Exit "ncpdq" |
---|
[544] | 2795 | fi |
---|
[451] | 2796 | |
---|
[544] | 2797 | IGCM_debug_PopStack "IGCM_sys_ncpdq" |
---|
[451] | 2798 | } |
---|
| 2799 | |
---|
| 2800 | function IGCM_sys_ncra { |
---|
[544] | 2801 | IGCM_debug_PushStack "IGCM_sys_ncra" -- $@ |
---|
| 2802 | if ( $DEBUG_sys ) ; then |
---|
| 2803 | echo "IGCM_sys_ncra :" $@ |
---|
| 2804 | fi |
---|
[714] | 2805 | |
---|
| 2806 | typeset NB_ESSAI DELAI status i |
---|
| 2807 | # number of tentative |
---|
| 2808 | NB_ESSAI=3 |
---|
| 2809 | # time delay between tentative |
---|
| 2810 | DELAI=2 |
---|
| 2811 | |
---|
| 2812 | i=0 |
---|
| 2813 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2814 | ncra $@ > out_rsync 2>&1 |
---|
| 2815 | status=$? |
---|
| 2816 | if [ ${status} -gt 0 ] ; then |
---|
| 2817 | IGCM_debug_Print 2 "IGCM_sys_ncra : error code ${status}" |
---|
| 2818 | cat out_rsync |
---|
| 2819 | \rm out_rsync |
---|
| 2820 | IGCM_debug_Print 2 "IGCM_sys_ncra : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2821 | sleep $DELAI |
---|
[714] | 2822 | else |
---|
| 2823 | \rm out_rsync |
---|
| 2824 | break |
---|
| 2825 | fi |
---|
| 2826 | (( i = i + 1 )) |
---|
| 2827 | done |
---|
| 2828 | |
---|
| 2829 | if [ ${status} -gt 0 ] ; then |
---|
| 2830 | echo "IGCM_sys_ncra : ncra error" |
---|
| 2831 | IGCM_debug_Exit "ncra" |
---|
[544] | 2832 | fi |
---|
[451] | 2833 | |
---|
[544] | 2834 | IGCM_debug_PopStack "IGCM_sys_ncra" |
---|
[451] | 2835 | } |
---|
| 2836 | |
---|
| 2837 | function IGCM_sys_ncrcat { |
---|
[544] | 2838 | IGCM_debug_PushStack "IGCM_sys_ncrcat" -- $@ |
---|
| 2839 | if ( $DEBUG_sys ) ; then |
---|
| 2840 | echo "IGCM_sys_ncrcat :" $@ |
---|
| 2841 | fi |
---|
[714] | 2842 | |
---|
| 2843 | typeset NB_ESSAI DELAI status i |
---|
| 2844 | # number of tentative |
---|
| 2845 | NB_ESSAI=3 |
---|
| 2846 | # time delay between tentative |
---|
| 2847 | DELAI=2 |
---|
| 2848 | |
---|
| 2849 | i=0 |
---|
| 2850 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2851 | ncrcat $@ > out_rsync 2>&1 |
---|
| 2852 | status=$? |
---|
| 2853 | if [ ${status} -gt 0 ] ; then |
---|
| 2854 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : error code ${status}" |
---|
| 2855 | cat out_rsync |
---|
| 2856 | \rm out_rsync |
---|
| 2857 | IGCM_debug_Print 2 "IGCM_sys_ncrcat : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2858 | sleep $DELAI |
---|
[714] | 2859 | else |
---|
| 2860 | \rm out_rsync |
---|
| 2861 | break |
---|
| 2862 | fi |
---|
| 2863 | (( i = i + 1 )) |
---|
| 2864 | done |
---|
| 2865 | |
---|
| 2866 | if [ ${status} -gt 0 ] ; then |
---|
| 2867 | echo "IGCM_sys_ncrcat : ncrcat error" |
---|
| 2868 | #IGCM_debug_Exit "ncrcat" |
---|
[544] | 2869 | fi |
---|
[451] | 2870 | |
---|
[544] | 2871 | IGCM_debug_PopStack "IGCM_sys_ncrcat" |
---|
[451] | 2872 | } |
---|
| 2873 | |
---|
| 2874 | function IGCM_sys_ncrename { |
---|
[544] | 2875 | IGCM_debug_PushStack "IGCM_sys_ncrename" -- $@ |
---|
| 2876 | if ( $DEBUG_sys ) ; then |
---|
| 2877 | echo "IGCM_sys_ncrename :" $@ |
---|
| 2878 | fi |
---|
[714] | 2879 | |
---|
| 2880 | typeset NB_ESSAI DELAI status i |
---|
| 2881 | # number of tentative |
---|
| 2882 | NB_ESSAI=3 |
---|
| 2883 | # time delay between tentative |
---|
| 2884 | DELAI=2 |
---|
| 2885 | |
---|
| 2886 | i=0 |
---|
| 2887 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2888 | ncrename $@ > out_rsync 2>&1 |
---|
| 2889 | status=$? |
---|
| 2890 | if [ ${status} -gt 0 ] ; then |
---|
| 2891 | IGCM_debug_Print 2 "IGCM_sys_ncrename : error code ${status}" |
---|
| 2892 | cat out_rsync |
---|
| 2893 | \rm out_rsync |
---|
| 2894 | IGCM_debug_Print 2 "IGCM_sys_ncrename : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2895 | sleep $DELAI |
---|
[714] | 2896 | else |
---|
| 2897 | \rm out_rsync |
---|
| 2898 | break |
---|
| 2899 | fi |
---|
| 2900 | (( i = i + 1 )) |
---|
| 2901 | done |
---|
| 2902 | |
---|
| 2903 | if [ ${status} -gt 0 ] ; then |
---|
| 2904 | echo "IGCM_sys_ncrename : ncrename error" |
---|
| 2905 | IGCM_debug_Exit "ncrename" |
---|
[544] | 2906 | fi |
---|
[451] | 2907 | |
---|
[544] | 2908 | IGCM_debug_PopStack "IGCM_sys_ncrename" |
---|
[451] | 2909 | } |
---|
| 2910 | |
---|
| 2911 | function IGCM_sys_ncwa { |
---|
[544] | 2912 | IGCM_debug_PushStack "IGCM_sys_ncwa" -- $@ |
---|
| 2913 | if ( $DEBUG_sys ) ; then |
---|
| 2914 | echo "IGCM_sys_ncwa :" $@ |
---|
| 2915 | fi |
---|
[714] | 2916 | |
---|
| 2917 | typeset NB_ESSAI DELAI status i |
---|
| 2918 | # number of tentative |
---|
| 2919 | NB_ESSAI=3 |
---|
| 2920 | # time delay between tentative |
---|
| 2921 | DELAI=2 |
---|
| 2922 | |
---|
| 2923 | i=0 |
---|
| 2924 | while [ $i -lt $NB_ESSAI ] ; do |
---|
| 2925 | ncwa $@ > out_rsync 2>&1 |
---|
| 2926 | status=$? |
---|
| 2927 | if [ ${status} -gt 0 ] ; then |
---|
| 2928 | IGCM_debug_Print 2 "IGCM_sys_ncwa : error code ${status}" |
---|
| 2929 | cat out_rsync |
---|
| 2930 | \rm out_rsync |
---|
| 2931 | IGCM_debug_Print 2 "IGCM_sys_ncwa : ${i}/${NB_ESSAI} sleep ${DELAI} seconds and try again." |
---|
[733] | 2932 | sleep $DELAI |
---|
[714] | 2933 | else |
---|
| 2934 | \rm out_rsync |
---|
| 2935 | break |
---|
| 2936 | fi |
---|
| 2937 | (( i = i + 1 )) |
---|
| 2938 | done |
---|
| 2939 | |
---|
| 2940 | if [ ${status} -gt 0 ] ; then |
---|
| 2941 | echo "IGCM_sys_ncwa : ncwa error" |
---|
| 2942 | IGCM_debug_Exit "ncwa" |
---|
[544] | 2943 | fi |
---|
[451] | 2944 | |
---|
[544] | 2945 | IGCM_debug_PopStack "IGCM_sys_ncwa" |
---|
[451] | 2946 | } |
---|
[544] | 2947 | |
---|
| 2948 | ############################################################## |
---|
| 2949 | # CDO OPERATOR |
---|
| 2950 | |
---|
| 2951 | function IGCM_sys_cdo { |
---|
| 2952 | IGCM_debug_PushStack "IGCM_sys_cdo" -- $@ |
---|
| 2953 | if ( $DEBUG_sys ) ; then |
---|
| 2954 | echo "IGCM_sys_cdo :" $@ |
---|
| 2955 | fi |
---|
[714] | 2956 | |
---|
| 2957 | typeset status |
---|
| 2958 | |
---|
| 2959 | \cdo $@ > out_rsync 2>&1 |
---|
| 2960 | status=$? |
---|
| 2961 | if [ ${status} -gt 0 ] ; then |
---|
| 2962 | echo "IGCM_sys_cdo : error code ${status}" |
---|
| 2963 | cat out_rsync |
---|
| 2964 | \rm out_rsync |
---|
[544] | 2965 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2966 | return 1 |
---|
| 2967 | else |
---|
| 2968 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2969 | return 0 |
---|
| 2970 | fi |
---|
| 2971 | |
---|
| 2972 | IGCM_debug_PopStack "IGCM_sys_cdo" |
---|
| 2973 | } |
---|
[768] | 2974 | |
---|
| 2975 | #D-#================================================== |
---|
| 2976 | #D-function IGCM_sys_CountJobInQueue |
---|
| 2977 | #D-* Purpose: Check if job_name is currently |
---|
| 2978 | #D- running or in queue |
---|
| 2979 | #D-* Examples: IGCM_sys_CountJobInQueue ${JobName} NbRun |
---|
| 2980 | #D- |
---|
| 2981 | |
---|
| 2982 | function IGCM_sys_CountJobInQueue { |
---|
| 2983 | IGCM_debug_PushStack "IGCM_sys_CountJobInQueue" |
---|
| 2984 | if ( $DEBUG_sys ) ; then |
---|
| 2985 | echo "IGCM_sys_CountJobInQueue" |
---|
| 2986 | fi |
---|
| 2987 | |
---|
| 2988 | #NbRun=$( ccc_mstat -f | grep -c ${JobName} ) |
---|
| 2989 | |
---|
| 2990 | # With -f option, the full job name is given in the last column |
---|
| 2991 | NbRun=$( ccc_mstat -f | gawk -v JobName=$1 'BEGIN { x=0 } ($NF~String) { x=x+1 } END { print x }' ) |
---|
| 2992 | |
---|
| 2993 | eval ${2}=${NbRun} |
---|
| 2994 | |
---|
| 2995 | IGCM_debug_PopStack "IGCM_sys_CountJobInQueue" |
---|
| 2996 | } |
---|
| 2997 | |
---|