Changeset 257 for trunk/libIGCM/libIGCM_post

Timestamp:

04/09/10 12:08:01 (14 years ago)

Author:

sdipsl

Message:

• Add mercure-new : libIGCM_sys_mercure.ksh
• SX9 use mercure-new for post-processing
• Few feature missing on mercure-new dmget not yet install for example
• Properly reset all svn:keywords feature
• Bugfix in libIGCM_post.ksh when RebuildFromArchive? was false
• Bugfix in IGCM_Patch_20090317_histcomFillvalue.ksh when renaming _Fillvalue we now just add missing_value to be retro-compatible
• Some more comments

Location:

trunk/libIGCM/libIGCM_post

Files:

• IGCM_Patch_20090317_histcom__Fillvalue.ksh (modified) (2 diffs, 1 prop)
• IGCM_Patch_20090407_histcom_time_axis.ksh (modified) (1 diff, 1 prop)
• IGCM_Patch_20091030_histcom_time_axis.ksh (modified) (1 diff, 1 prop)
• IGCM_Patch_20091116_ncks_ncra.ksh (modified) (1 diff, 1 prop)
• IGCM_Patch_20091118_mask.ksh (modified) (3 diffs, 1 prop)
• IGCM_Patch_20091119_put_out.ksh (modified) (1 diff, 1 prop)
• libIGCM_post.ksh (modified) (1 diff)

trunk/libIGCM/libIGCM_post/IGCM_Patch_20090317_histcom__Fillvalue.ksh

@@ -4 +4 @@
 # Author: Martial Mancip
 # Contact: Martial.Mancip_ipsl.jussieu.fr
-# $Date: 2008-05-29 11:02:19 +0200 (Thu, 29 May 2008) $
-# $Author: mmaipsl $
-# $Revision: 5 $
+# $Date$
+# $Author$
+# $Revision$
 # IPSL (2006)
 #  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
@@ -25 +25 @@
     IGCM_sys_Chmod 644 ${file}
 
-    IGCM_sys_ncrename -O --hst -a _Fillvalue,missing_value ${file}
+    #IGCM_sys_ncrename -O --hst -a _Fillvalue,missing_value ${file}
+
+    miss=$( ncdump -h ${file} | grep _Fillvalue | head -1 | awk "-F=" '{print $2}' |  awk "-Ff" '{print $1}' )
+
+    [ ! X${miss} = X ] && IGCM_sys_ncatted -a missing_value,,c,f,${miss} ${file} 
 
     IGCM_sys_Mv ${file} ${1}

trunk/libIGCM/libIGCM_post/IGCM_Patch_20090407_histcom_time_axis.ksh

@@ -4 +4 @@
 # Author: Martial Mancip
 # Contact: Martial.Mancip_ipsl.jussieu.fr
-# $Date: $
-# $Author: mmaipsl $
-# $Revision: $
+# $Date$
+# $Author$
+# $Revision$
 # IPSL (2006)
 #  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

trunk/libIGCM/libIGCM_post/IGCM_Patch_20091030_histcom_time_axis.ksh

@@ -4 +4 @@
 # Author: Martial Mancip
 # Contact: Martial.Mancip_ipsl.jussieu.fr
-# $Date: $
-# $Author: mmaipsl $
-# $Revision: $
+# $Date$
+# $Author$
+# $Revision$
 # IPSL (2006)
 #  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

trunk/libIGCM/libIGCM_post/IGCM_Patch_20091116_ncks_ncra.ksh

@@ -2 +2 @@
 
 #**************************************************************
+# Author: Marie-Alice Foujols
 # Contact: Foujols_ipsl.jussieu.fr
-# Modified by Marie-Alice Foujols
-# $Date: $
-# $Author: mafoipsl $
-# $Revision: $
+# $Date$
+# $Author$
+# $Revision$
 # IPSL (2009)
 #  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

trunk/libIGCM/libIGCM_post/IGCM_Patch_20091118_mask.ksh

@@ -1 +1 @@
 #!/bin/ksh
+
+#**************************************************************
+# Author: Arnaud Caubel
+# Contact: Arnaud.Caubel_lsce.ipsl.fr
+# $Date$
+# $Author$
+# $Revision$
+# IPSL (2009)
+#  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC
+#
+#**************************************************************
 
 #------------------------------------------------------------
@@ -7 +18 @@
 function IGCM_Patch_20091118_mask {
 
-    set -vx
     IGCM_debug_PushStack "IGCM_Patch_mask" $@
 
@@ -38 +48 @@
     fi
 
-#============================================
-# Remove nav_lon, nav_lat file
+    #============================================
+    # Remove nav_lon, nav_lat file
     IGCM_sys_ncks -Oh -x -v nav_lon,nav_lat ${filename} file1.nc
 
-#============================================
-# Extract mask variable
+    #============================================
+    # Extract mask variable
     IGCM_sys_ncks -Oh -v ${mask} ${config_UserChoices_JobName}_mesh_mask.nc mask3D.nc
 
-#============================================
-# Rename deptht dimension
+    #============================================
+    # Rename deptht dimension
     IGCM_sys_ncrename -Oh -d z,${depth} mask3D.nc
 
-#============================================
-# Remove single dimension t
+    #============================================
+    # Remove single dimension t
     IGCM_sys_ncwa -Oh -a t mask3D.nc mask3D.nc
 
-#============================================
-# Create mask2D 
+    #============================================
+    # Create mask2D 
     IGCM_sys_ncks -Oh -d ${depth},0,0 mask3D.nc mask2D.nc
     IGCM_sys_ncwa -Oh -a ${depth} mask2D.nc mask2D.nc
     IGCM_sys_ncrename -h -v ${mask},mask2D mask2D.nc
 
-#============================================
-# Append mask (2D) to file1.nc
+    #============================================
+    # Append mask (2D) to file1.nc
     IGCM_sys_ncks -Ah -c -v mask2D mask2D.nc file1.nc
 
     if [ ${filename} = ${chaineIce} ]; then
 
-#============================================
-# Append mask (3D) only for oceanic files
+        #============================================
+        # Append mask (3D) only for oceanic files
         IGCM_sys_ncks -Ah -v ${mask} mask3D.nc file1.nc
         IGCM_sys_ncrename -h -v ${mask},mask3D file1.nc
 
-#============================================
-# Add record dimension only for oceanic files
+        #============================================
+        # Add record dimension only for oceanic files
         IGCM_sys_ncecat -Oh file1.nc file1.nc
 
-#============================================
-# Apply mask 3D only for oceanic files
+        #============================================
+        # Apply mask 3D only for oceanic files
         IGCM_sys_ncwa -Oh -a record -B 'mask3D==1' file1.nc file1.nc
 
     fi
 
-#============================================
-# Add record dimension
+    #============================================
+    # Add record dimension
     IGCM_sys_ncecat -Oh file1.nc file1.nc
 
-#============================================
-# Apply mask 2D
+    #============================================
+    # Apply mask 2D
     IGCM_sys_ncwa -Oh -b -a record -B 'mask2D==1' file1.nc file1.nc
 
-#============================================
-# Permute record dimension in time_counter dimension
-
+    #============================================
+    # Permute record dimension in time_counter dimension
     IGCM_sys_ncpdq -Oh -a time_counter,record file1.nc file1.nc
     IGCM_sys_ncwa -Oh -a record file1.nc file1.nc
 
-#============================================
-# Remove mask
+    #============================================
+    # Remove mask
     IGCM_sys_ncks -Oh -x -v mask2D,mask3D file1.nc file_mask.nc
 
-#============================================
-# Add nav_lon nav_lat
+    #============================================
+    # Add nav_lon nav_lat
     IGCM_sys_ncks -Ah -v nav_lon,nav_lat ${filename} file_mask.nc
 
-#============================================
-# Cleaning
+    #============================================
+    # Cleaning
     IGCM_debug_Verif_Exit_Post
     IGCM_sys_Mv file_mask.nc ${filename}

trunk/libIGCM/libIGCM_post/IGCM_Patch_20091119_put_out.ksh

@@ -4 +4 @@
 # Contact: Foujols_ipsl.jussieu.fr
 # Modified by Marie-Alice Foujols
-# $Date: $
-# $Author: mafoipsl $
-# $Revision: $
+# $Date$
+# $Author$
+# $Revision$
 # IPSL (2009)
 #  This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC

trunk/libIGCM/libIGCM_post/libIGCM_post.ksh

@@ -628 +628 @@
         if [ ${config_Post_RebuildFromArchive} = true ] ; then
             IGCM_sys_Put_Dir REBUILD_${PeriodDateBegin} ${REBUILD_DIR}
-        elif [ ${RebuildFrequency} = true ] ; then
+        else
             IGCM_sys_Mv      REBUILD_${PeriodDateBegin} ${REBUILD_DIR}
         fi