Changeset 370 for trunk


Ignore:
Timestamp:
10/27/10 14:44:39 (14 years ago)
Author:
mafoipsl
Message:

Add AA_create_multi_se script to build SE_nnnY based on previous SE.
Use optionnal MultiSeasonalFrequency?[=50 by default] parameter in config.card Post Section.
Use climatological time axis for SE and SE_nnnY files.
Add DIR_OUT to allow atlas to work with SE_nnnY.
Add POST_DIR default value for interactive session.

Location:
trunk/libIGCM
Files:
1 added
6 edited

Legend:

Unmodified
Added
Removed

  • trunk/libIGCM/AA_atlas_LMDZ

    r316 r370  
    3232#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    3333#-Q- sx8brodie # @ notification = error 
    34 #-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    3535#-Q- sx8brodie # @ queue 
    3636#-Q- aix6 #!/bin/ksh 
    … …  
    4848#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    4949#-Q- aix6 # @ notification = error 
    50 #-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    5151#-Q- aix6 # @ queue 
    5252#-Q- sx8mercure #!/bin/ksh 
    … …  
    162162R_ATLAS=ATLAS/SE_${YEARS} 
    163163R_OUT_ATM=${R_SAVE}/ATM 
     164DIR_OUT=${DIR_OUT:=SE} 
    164165 
    165166RUN_DIR=${RUN_DIR_PATH}/ATLAS_LMDZ_${YEARS} 
    … …  
    172173# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 
    173174 
    174 IGCM_sys_Get ${R_OUT_ATM}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc ${RUN_DIR} 
     175IGCM_sys_Get ${R_OUT_ATM}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_histmth.nc ${RUN_DIR} 
    175176 
    176177# Only LMDZ4 output have Alt variables 

  • trunk/libIGCM/AA_atlas_ORCA_LIM

    r367 r370  
    3232#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    3333#-Q- sx8brodie # @ notification = error 
    34 #-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    3535#-Q- sx8brodie # @ queue 
    3636#-Q- aix6 #!/bin/ksh 
    … …  
    4848#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    4949#-Q- aix6 # @ notification = error 
    50 #-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    5151#-Q- aix6 # @ queue 
    5252#-Q- sx8mercure #!/bin/ksh 
    … …  
    162162R_OUT_OCE=${R_SAVE}/OCE 
    163163R_OUT_ICE=${R_SAVE}/ICE 
     164DIR_OUT=${DIR_OUT:=SE} 
    164165 
    165166RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCALIM_${YEARS} 
    … …  
    172173# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 
    173174 
    174 IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR} 
    175 IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR} 
    176 IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR} 
    177 IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR} 
    178 IGCM_sys_Get ${R_OUT_ICE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR} 
     175IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc  ${RUN_DIR} 
     176IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_U.nc  ${RUN_DIR} 
     177IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_V.nc  ${RUN_DIR} 
     178IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_W.nc  ${RUN_DIR} 
     179IGCM_sys_Get ${R_OUT_ICE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_icemod.nc  ${RUN_DIR} 
    179180 
    180181atlas -o ${RUN_DIR}/${R_ATLAS}/OCE_T -l ${FER_ATLAS}/atlas_p_${RESOL_OCE}_diag1_[ab].cfg     ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_grid_T.nc 
    … …  
    215216# WHILE WAITING FOR A MORE GENERIC SOLUTION 
    216217if ( [ ${config_UserChoices_TagName} = "IPSLCM5" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A" ] || [ ${config_UserChoices_TagName} = "IPSLCM5A-MR" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2" ] || [ ${config_UserChoices_TagName} = "ORCA2_LIM2_PISCES" ] ) ; then 
    217     IGCM_sys_Get ${R_OUT_OCE}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ; 
     218    IGCM_sys_Get ${R_OUT_OCE}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc  ${RUN_DIR} ; 
    218219    atlas -o ${RUN_DIR}/${R_ATLAS}/ZNL   -d -l ${FER_ATLAS}/atlas_l_${RESOL_OCE}_znl.cfg         ${RUN_DIR}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diaptr.nc ; 
    219220    for file in $( ls ${R_ATLAS}/ZNL/*/*jnl ) ; do 

  • trunk/libIGCM/AA_atlas_ORCHIDEE

    r316 r370  
    3232#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    3333#-Q- sx8brodie # @ notification = error 
    34 #-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    3535#-Q- sx8brodie # @ queue 
    3636#-Q- aix6 #!/bin/ksh 
    … …  
    4848#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    4949#-Q- aix6 # @ notification = error 
    50 #-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    5151#-Q- aix6 # @ queue 
    5252#-Q- sx8mercure #!/bin/ksh 
    … …  
    170170R_ATLAS=ATLAS/SE_${YEARS} 
    171171R_OUT_SRF=${R_SAVE}/SRF 
     172DIR_OUT=${DIR_OUT:=SE} 
    172173 
    173174RUN_DIR=${RUN_DIR_PATH}/ATLAS_ORCHIDEE_${YEARS} 
    … …  
    180181# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 
    181182 
    182 IGCM_sys_Get ${R_OUT_SRF}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} 
     183IGCM_sys_Get ${R_OUT_SRF}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_sechiba_history.nc ${RUN_DIR} 
    183184 
    184185atlas -o ${RUN_DIR}/${R_ATLAS}/SRF -l ${FER_ATLAS}/atlas_p_ORCHIDEE_diag1_*.cfg \ 

  • trunk/libIGCM/AA_atlas_PISCES

    r316 r370  
    3232#-Q- sx8brodie # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    3333#-Q- sx8brodie # @ notification = error 
    34 #-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     34#-Q- sx8brodie # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    3535#-Q- sx8brodie # @ queue 
    3636#-Q- aix6 #!/bin/ksh 
    … …  
    4848#-Q- aix6 # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) 
    4949#-Q- aix6 # @ notification = error 
    50 #-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $MASTER ; $libIGCM_SX 
     50#-Q- aix6 # @ environment  = $POST_DIR ; $SUBMIT_DIR ; $libIGCM ; $R_INIT ; $R_BC ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $R_SAVE ; $config_UserChoices_JobName ; $config_UserChoices_TagName ; $YEARS ; $DIR_OUT ; $MASTER ; $libIGCM_SX 
    5151#-Q- aix6 # @ queue 
    5252#-Q- sx8mercure #!/bin/ksh 
    … …  
    162162R_ATLAS=ATLAS/SE_${YEARS} 
    163163R_OUT_MBG=${R_SAVE}/MBG 
     164DIR_OUT=${DIR_OUT:=SE} 
    164165 
    165166RUN_DIR=${RUN_DIR_PATH}/ATLAS_PISCES_${YEARS} 
    … …  
    172173# IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII 
    173174 
    174 IGCM_sys_Get ${R_OUT_MBG}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR} 
    175 IGCM_sys_Get ${R_OUT_MBG}/Analyse/SE/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR} 
     175IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_ptrc_T.nc  ${RUN_DIR} 
     176IGCM_sys_Get ${R_OUT_MBG}/Analyse/${DIR_OUT}/${config_UserChoices_JobName}_SE_${YEARS}_1M_diad_T.nc  ${RUN_DIR} 
    176177 
    177178atlas -o ${RUN_DIR}/${R_ATLAS}/MBG_T -l ${FER_ATLAS}/atlas_p_PISCES_diag1_*.cfg  \ 

  • trunk/libIGCM/AA_create_se

    r367 r370  
    133133#D- Flag to determine atlas job's output directory 
    134134#D- Default : value from libIGCM_post.ksh if any 
    135 POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} 
     135POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} 
    136136 
    137137#D- Increased verbosity (1, 2, 3) 
    … …  
    397397          IGCM_sys_Rm tmpfile_ncra 
    398398 
     399          # detect time counter : time or time_counter ie unlimited variable 
     400          var_unlim=$(ncdump -h ${liste_file_se_tmp[1]}|grep UNLIMITED| cut -d ' ' -f 1) 
     401 
    399402          for mois in  01 02 03 04 05 06 07 08 09 10 11 12 ; do 
    400403          # 
    … …  
    402405          # 
    403406              OUT_SE[${nb}]=${config_UserChoices_JobName}_SE${mois}_${an_deb}_${an_fin}_${file}.nc 
    404               IGCM_sys_ncra -O -v ${list_var_final_ncra} -d time_counter,${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} 
     407              IGCM_sys_ncra -O -v ${list_var_final_ncra} -d ${var_unlim},${nb},,12 ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} 
    405408          done 
    406409          IGCM_sys_Rm ${liste_file_se_tmp[*]} 
    … …  
    459462              list_var_final_ncra=`cat tmpfile_ncra | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 == nbfile) {print $2}}' | paste -s -d ','` 
    460463              IGCM_sys_Rm tmpfile_ncra 
     464 
    461465              IGCM_sys_ncra -O -v ${list_var_final_ncra} ${liste_file_se_tmp[*]} ${OUT_SE[${nb}]} 
    462466 
    … …  
    550554        IGCM_sys_Rm ${OUT_SE[*]} 
    551555        # 
    552         if [ ${comp} = "CPL" ] ; then 
    553               ${ncatted} -a modulo,time,c,c," " ${RESULT_SE} 
    554         else 
    555               ${ncatted} -a modulo,time_counter,c,c," " ${RESULT_SE} 
    556         fi 
     556        # detect time counter : time or time_counter ie unlimited variable 
     557        var_unlim=$(ncdump -h ${RESULT_SE}|grep UNLIMITED| cut -d ' ' -f 1) 
     558 
     559        # add modulo attribute on time axis 
     560        ${ncatted} -a modulo,${var_unlim},c,c," " ${RESULT_SE} 
    557561        # 
    558562        eval IGCM_sys_Put_Out ${RESULT_SE} \${R_OUT_${comp}}/Analyse/SE/${RESULT_SE} 
    … …  
    571575 
    572576YEARS=${an_deb}_${an_fin} 
     577DIR_OUT=SE 
    573578 
    574579export POST_DIR; export SUBMIT_DIR; export libIGCM; export R_INIT; export R_BC; export StandAlone 
    575580export RESOL_ATM; export RESOL_OCE ; export RESOL_ICE ; export RESOL_MBG ; export RESOL_SRF ; export RESOL_SBG 
    576 export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS;  
    577 listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS" 
     581export R_SAVE; export config_UserChoices_JobName; export config_UserChoices_TagName; export YEARS; export DIR_OUT  
     582listVarEnv="POST_DIR,SUBMIT_DIR,libIGCM,R_INIT,R_BC,StandAlone,RESOL_ATM,RESOL_OCE,RESOL_ICE,RESOL_MBG,RESOL_SRF,RESOL_SBG,R_SAVE,config_UserChoices_JobName,config_UserChoices_TagName,YEARS,DIR_OUT" 
    578583export listVarEnv; 
    579584 

  • trunk/libIGCM/AA_create_ts

    r316 r370  
    145145#D- Flag to determine job's output directory 
    146146#D- Default : value from libIGCM_post.ksh if any 
    147 POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} 
     147POST_DIR=${POST_DIR:=${PBS_O_WORKDIR:=$(pwd)}} 
    148148 
    149149#D- Increased verbosity (1, 2, 3) 
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