#-Q- curie ###################### #-Q- curie ## CURIE TGCC/CEA ## #-Q- curie ###################### #-Q- curie #MSUB -r REBUILDWRK # Nom du job #-Q- curie #MSUB -o REBUILDWRK.out_%I #-Q- curie #MSUB -e REBUILDWRK.out_%I #-Q- curie #MSUB -n 1 # Reservation du processus #-Q- curie #MSUB -T 36000 # Limite de temps elapsed du job #-Q- curie #MSUB -q standard # xlarge:fat nodes standard:thin nodes #-Q- curie #MSUB -x # exclusive node (needed to use high speed disk below) #-Q- curie #MSUB -Q normal #-Q- curie #MSUB -A ::default_project:: #-Q- curie RUN_DIR_PATH=/tmp/REBUILD_DIR_MR_$$ # RAM high speed disk partition ; 250GB/node. Along with -q standard #-Q- curie #RUN_DIR_PATH=/dev/shm/REBUILD_DIR_MR_$$ # SSD high speed disk partition ; 64GB/node. Along with -q xlarge #-Q- curie set +x #-Q- irene ###################### #-Q- irene ## IRENE TGCC/CEA ## #-Q- irene ###################### #-Q- irene #MSUB -r REBUILDWRK # Job name #-Q- irene #MSUB -o REBUILDWRK.out_%I #-Q- irene #MSUB -e REBUILDWRK.out_%I #-Q- irene #MSUB -n 1 #-Q- irene #MSUB -T 36000 # Maximum elapsed time #-Q- irene #MSUB -q ::default_node:: #-Q- irene #MSUB -c ::default_core:: #-Q- irene #MSUB -Q normal #-Q- irene #MSUB -A ::default_post_project:: #-Q- irene #MSUB -m store,work,scratch #-Q- irene set +x #-Q- ada #!/bin/ksh #-Q- ada ####################### #-Q- ada ## ADA IDRIS ## #-Q- ada ####################### #-Q- ada # @ job_type = mpich #-Q- ada # @ requirements = (Feature == "prepost") #-Q- ada # Temps Elapsed max. d'une requete hh:mm:ss #-Q- ada # @ wall_clock_limit = 10:00:00 #-Q- ada # Nom du travail LoadLeveler #-Q- ada # @ job_name = REBUILDWRK #-Q- ada # Fichier de sortie standard du travail #-Q- ada # @ output = $(job_name).$(jobid) #-Q- ada # Fichier de sortie d'erreur du travail #-Q- ada # @ error = $(job_name).$(jobid) #-Q- ada # pour recevoir un mail en cas de depassement du temps Elapsed (ou autre pb.) #-Q- ada # @ notification = error #-Q- ada # @ environment = $DEBUG_debug ; $BigBrother ; $postProcessingStopLevel ; $MODIPSL ; $libIGCM ; $libIGCM_SX ; $SUBMIT_DIR ; $REBUILD_DIR ; $POST_DIR ; $Script_Post_Output ; $DateBegin ; $PeriodDateBegin ; $PeriodDateEnd ; $NbRebuildDir ; $StandAlone ; $RESOL_ATM ; $RESOL_OCE ; $RESOL_ICE ; $RESOL_MBG ; $RESOL_SRF ; $RESOL_SBG ; $MASTER ; wall_clock_limit=$(wall_clock_limit) #-Q- ada # @ queue #-Q- lxiv8 ###################### #-Q- lxiv8 ## OBELIX LSCE ## #-Q- lxiv8 ###################### #-Q- lxiv8 #PBS -N REBUILDWRK #-Q- lxiv8 #PBS -m a #-Q- lxiv8 #PBS -j oe #-Q- lxiv8 #PBS -q medium #-Q- lxiv8 #PBS -o REBUILDWRK.$$ #-Q- lxiv8 #PBS -S /bin/ksh #-Q- ifort_CICLAD ###################### #-Q- ifort_CICLAD ## CICLAD IPSL ## #-Q- ifort_CICLAD ###################### #-Q- ifort_CICLAD #PBS -N REBUILDWRK #-Q- ifort_CICLAD #PBS -m a #-Q- ifort_CICLAD #PBS -j oe #-Q- ifort_CICLAD #PBS -q std #-Q- ifort_CICLAD #PBS -S /bin/ksh #-Q- default #!/bin/ksh #-Q- default ################## #-Q- default ## DEFAULT HOST ## #-Q- default ################## #************************************************************** # Author: Sebastien Denvil # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr # $Revision:: $ Revision of last commit # $Author:: $ Author of last commit # $Date:: $ Date of last commit # IPSL (2006) # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC # #************************************************************** #set -eu #set -vx date #-Q- ada export OMP_NUM_THREADS=1 #D- Task type DO NOT CHANGE (computing, post-processing or checking) TaskType=post-processing ######################################################################## #D- Flag to determine if this job in a standalone mode #D- Default : value from AA_job if any StandAlone=${StandAlone:=true} #D- Path to libIGCM #D- Default : value from AA_job if any # WARNING For StandAlone use : To run this script on some machine (ulam and cesium) # WARNING you must check MirrorlibIGCM variable in sys library. # WARNING If this variable is true, you must use libIGCM_POST path instead # WARNING of your running libIGCM directory. libIGCM=${libIGCM:=::modipsl::/libIGCM} #-D- $hostname of the MASTER job when SUBMIT_DIR is not visible on postprocessing computer. MASTER=${MASTER:=ada|curie} #D- Directory where files we need to rebuild are store #D- Default : value from AA_job if any #D- REBUILD_DIR=${BIGDIR}/REBUILD/TagName/JobName/ #D- example : /scratch/cont003/p86denv/REBUILD/IPSLCM5/SCAL-NEW REBUILD_DIR=${REBUILD_DIR:=/path/to/your/TMP/REBUILD/FILES} #D- How many directory to rebuild we have to consider #D- Default : value from AA_job if any NbRebuildDir=${NbRebuildDir:=1000} #D- Suffix date we will use to determine which directory to rebuild #D- We will rebuild NbRebuildDir before and including PeriodDateBegin #D- Default : value from AA_job if any LastPeriodForRebuild=${LastPeriodForRebuild:=${PeriodDateBegin:=18901201}} #D- Flag to determine atlas job's output directory #D- Default : value from libIGCM_post.ksh if any POST_DIR=${POST_DIR:=${PBS_O_WORKDIR}} #-D- libIGCM_SX contains libIGCM on Master computer. Required on some center. Always OK. libIGCM_SX=${libIGCM_SX:=::modipsl::/libIGCM} #D- Increased verbosity (1, 2, 3) #D- Default : value from AA_job if any Verbosity=${Verbosity:=3} #D- Low level debug : to bypass lib test checks and stack construction #D- Default : value from AA_job if any DEBUG_debug=${DEBUG_debug:=false} #D- TEMPORARY Flag to determine atmospheric resolution #D- Default : value from atmospheric driver if any RESOL_ATM=${RESOL_ATM:=ALL} #D- TEMPORARY Flag to determine ocean resolution #D- Default : value from ocean driver if any RESOL_OCE=${RESOL_OCE:=ORCA2} #D- TEMPORARY Flag to determine ice resolution #D- Default : value from ice driver if any RESOL_ICE=${RESOL_OCE:=ORCA2} #D- TEMPORARY Flag to determine biogeochemistry resolution #D- Default : value from ice driver if any RESOL_MBG=${RESOL_OCE:=ORCA2} #D- Flag to determine surface resolution #D- Default : value from surface driver if any RESOL_SRF=ALL #D- Flag to determine surface resolution #D- Default : value from surface driver if any RESOL_SBG=ALL ######################################################################## . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh . ${libIGCM}/libIGCM_card/libIGCM_card.ksh . ${libIGCM}/libIGCM_date/libIGCM_date.ksh #------- . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh . ${libIGCM}/libIGCM_config/libIGCM_config.ksh . ${libIGCM}/libIGCM_post/libIGCM_post.ksh #------- RUN_DIR=${RUN_DIR_PATH} IGCM_sys_MkdirWork ${RUN_DIR} IGCM_sys_Cd ${RUN_DIR} #------- ( ${DEBUG_debug} ) && IGCM_debug_Check ( ${DEBUG_debug} ) && IGCM_card_Check ( ${DEBUG_debug} ) && IGCM_date_Check ######################################################################## #set -vx # ------------------------------------------------------------------ # Test if all was right before proceeding further # ------------------------------------------------------------------ IGCM_debug_Verif_Exit if [ ${StandAlone} = true ] ; then CARD_DIR=${SUBMIT_DIR} else CARD_DIR=${RUN_DIR} IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} fi #================================== # First of all # # Read libIGCM compatibility version in config.card # Read UserChoices section # Read Ensemble section # Read Post section # Define all netcdf output directories #================================== IGCM_config_CommonConfiguration ${CARD_DIR}/config.card # ------------------------------------------------------------------ # Activate BigBrother so as to supervise this job # ------------------------------------------------------------------ IGCM_debug_BigBro_Initialize # Directory list to work with ListAllRebuildDir=$( IGCM_sys_RshMaster ls -d ${REBUILD_DIR}/REBUILD_* | grep -B $(( ${NbRebuildDir} -1 )) ${LastPeriodForRebuild} ) for directory in ${ListAllRebuildDir} ; do # IGCM_sys_Get_Master ${directory} ${RUN_DIR} # IGCM_sys_Cd ${RUN_DIR}/$( basename ${directory} ) # -------------------------------------------------------------------- # Source function include in the REBUILD ksh and rebuild # -------------------------------------------------------------------- . ${RUN_DIR}/$( basename ${directory} )/rebuild.ksh IGCM_FlushRebuild # IGCM_sys_Cd ${RUN_DIR} # Clean Up # local clean up IGCM_sys_Rm -rf $( basename ${directory} ) # remote clean up IGCM_sys_RshMaster rm -rf ${directory} done # Clean RUN_DIR_PATH (necessary for cesium and titane only) IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} # ------------------------------------------------------------------ # Finalize BigBrother to inform that the jobs end # ------------------------------------------------------------------ IGCM_debug_BigBro_Finalize date