1 | #/bin/bash |
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2 | ####################################################################################### |
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3 | # Launching scripts for LIM1D |
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4 | ####################################################################################### |
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5 | # v2.1, Sep 2009, Martin Vancoppenolle |
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6 | |
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7 | echo " ------------------------------------------------------------------------------------------------" |
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8 | # Adjust this section |
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9 | USERNICK="YOU" # user nickname |
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10 | |
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11 | EXP_ID="TEST_0000" # name of the experiment ### CHANGE |
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12 | SOURCE="source_3.20" # version of the sources |
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13 | TS="1h" # time step (1h or 1d) |
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14 | CONF="N_ICE_RL" # site at which we run the model |
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15 | MESSAGE="first test run" # Little message to know what is the run about |
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16 | |
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17 | SUBDIR=`pwd` |
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18 | |
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19 | MAINDIR="/net/hera/usr/hera/locean/temp/mvlod/2017/dev_v3.20_2016_platelet/" ### CHANGE |
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20 | |
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21 | SCRATCHDIR="$MAINDIR/SCRATCH/$EXP_ID" # SCRATCH - temporary directory on which code is run |
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22 | OUTDIR="$MAINDIR/RUN/$EXP_ID" # STORE - repository where we put the output files in the end |
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23 | SOURCEDIR="$MAINDIR/MAKE" # EXECUTABLE - exectuable & sources |
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24 | INFILEDIR="$MAINDIR/INPUT/$CONF/$SOURCE" # INPUT - initialization, forcing & param files |
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25 | |
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26 | GRAPHDIR="$MAINDIR/GRAPHICS" # IDL plots |
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27 | |
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28 | ####################################################################################### |
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29 | |
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30 | #prints commands on output |
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31 | set -x |
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32 | |
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33 | echo " ------------------------------------------------------------------------------------------------" |
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34 | echo " 1- Dear $USERNICK, the run is being prepared, please do something else" |
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35 | echo " ------------------------------------------------------------------------------------------------" |
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36 | #creates the experiment directory in run and scratch |
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37 | rm -rf $OUTDIR |
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38 | rm -rf $SCRATCHDIR |
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39 | |
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40 | mkdir $OUTDIR |
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41 | mkdir $SCRATCHDIR |
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42 | |
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43 | #goes to the scratch |
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44 | cd $SCRATCHDIR |
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45 | echo $MESSAGE > README |
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46 | mv README $OUTDIR |
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47 | |
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48 | #copies the executable |
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49 | cp $SOURCEDIR/lim1d.x $SCRATCHDIR/lim1d_$EXP_ID |
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50 | |
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51 | #copies the forcing and initialization files |
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52 | cp $INFILEDIR/* $SCRATCHDIR |
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53 | |
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54 | # rename files |
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55 | mv "forcing_"$CONF"_"$TS".nc" forcing.nc |
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56 | mv forcing.param.$TS forcing.param |
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57 | mv run.param.$TS run.param |
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58 | mv init_$CONF.nc init.nc |
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59 | |
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60 | # get time step and biological model |
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61 | DT=`sed -n 9,9p run.param` # time step in seconds |
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62 | CMOD=`sed -n '21,21p' run.param` # biological model |
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63 | |
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64 | #list the directory content |
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65 | ls -lt |
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66 | |
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67 | echo " ------------------------------------------------------------------------------------------------" |
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68 | echo " 2- Dear $USERNICK, everything is copied on the scratch, I am gonna start " |
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69 | echo " the run, bordel, and it may take a while depending on the number of iterations you bastard chose" |
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70 | echo " ------------------------------------------------------------------------------------------------" |
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71 | |
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72 | #runs the code |
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73 | nice ./lim1d_$EXP_ID > output.run.$EXP_ID |
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74 | ls -lt |
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75 | |
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76 | echo " ------------------------------------------------------------------------------------------------" |
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77 | echo " 3- I'm done and bored, $USERNICK, have to put everything in $OUTDIR " |
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78 | echo " ------------------------------------------------------------------------------------------------" |
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79 | |
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80 | #copies the relevant files in the run directory |
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81 | cp $SCRATCHDIR/lim1d_$EXP_ID $OUTDIR |
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82 | cp $SCRATCHDIR/*.param $OUTDIR |
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83 | cp $SCRATCHDIR/ice.out.nc $OUTDIR/ice.out.nc.$EXP_ID |
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84 | cp $SCRATCHDIR/run.out.txt $OUTDIR/run.out.txt.$EXP_ID |
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85 | cp $SCRATCHDIR/cons_bio.out.txt $OUTDIR/cons_bio.out.txt.$EXP_ID |
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86 | cp $SCRATCHDIR/forcing.out.txt $OUTDIR/forcing.out.txt.$EXP_ID |
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87 | |
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88 | cp $SCRATCHDIR/output.run.$EXP_ID $OUTDIR |
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89 | cp $SCRATCHDIR/output.run.$EXP_ID $SUBDIR |
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90 | cp $SCRATCHDIR/time.step $OUTDIR/time.step.$EXP_ID |
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91 | |
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92 | echo " ------------------------------------------------------------------------------------------------" |
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93 | echo " 4- Everything copied, $USERNICK, is this fine ? " |
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94 | ls -lt $OUTDIR |
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95 | echo " If problem go to $OUTDIR and check " |
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96 | echo " thanks a lot for using LIM1D, (c) martouf 2008 " |
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97 | |
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98 | #rm -rf $SCRATCHDIR |
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99 | |
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100 | echo " ------------------------------------------------------------------------------------------------" |
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101 | echo " 5- Graphics " |
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102 | |
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103 | # read the time step and biological model in the namelists |
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104 | |
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105 | cd $GRAPHDIR |
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106 | echo $EXP_ID > exp_id.dat |
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107 | echo $OUTDIR/ >> exp_id.dat |
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108 | echo $OUTDIR/ >> exp_id.dat |
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109 | echo $DT >> exp_id.dat |
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110 | echo $CMOD >> exp_id.dat |
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111 | echo $CONF >> exp_id.dat |
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112 | echo |
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113 | echo AAAAAAAAAAAAAAAAHHHHHHHHHHHHH |
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114 | echo |
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115 | cat exp_id.dat |
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116 | #cp exp_id.dat .. |
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117 | echo |
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118 | echo |
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119 | idl < plots_$CONF.exec |
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120 | |
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121 | cd $OUTDIR |
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122 | gv -swap $EXP_ID'_contours.ps' & |
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123 | gv -swap $EXP_ID'_stocks.ps' & |
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124 | gv -swap $EXP_ID'_profiles.ps' & |
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