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nemogcm.F90 in NEMO/branches/2020/dev_r12563_ASINTER-06_ABL_improvement/src/SAO – NEMO

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source: NEMO/branches/2020/dev_r12563_ASINTER-06_ABL_improvement/src/SAO/nemogcm.F90 @ 13159

Last change on this file since 13159 was 13159, checked in by gsamson, 4 years ago
merge trunk@r13136 into ASINTER-06 branch; pass all SETTE tests; results identical to trunk@r13136; ticket #2419
Property svn:keywords set to `Id`
File size: 21.0 KB

Rev	Line
[2496]	1	MODULE nemogcm
[2442]	2	!!======================================================================
[2496]	3	!! * MODULE nemogcm *
	4	!! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice)
[2442]	5	!!======================================================================
[9598]	6	!! History : 3.6 ! 2015-12 (A. Ryan) Original code (from OCE/)
[7646]	7	!! 4.0 ! 2016-11 (G. Madec, S. Flavoni) domain configuration / user defined interface
[1593]	8	!!----------------------------------------------------------------------
[3]	9
	10	!!----------------------------------------------------------------------
[7646]	11	!! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice
	12	!! nemo_init : initialization of the NEMO system
	13	!! nemo_ctl : initialisation of the contol print
	14	!! nemo_closefile: close remaining open files
	15	!! nemo_alloc : dynamical allocation
[3]	16	!!----------------------------------------------------------------------
[7646]	17	USE step_oce ! module used in the ocean time stepping module (step.F90)
	18	USE domain ! domain initialization (dom_init & dom_cfg routines)
	19	USE istate ! initial state setting (istate_init routine)
	20	USE phycst ! physical constant (par_cst routine)
	21	USE step ! NEMO time-stepping (stp routine)
	22	USE cpl_oasis3 ! OASIS3 coupling
	23	USE diaobs ! Observation diagnostics (dia_obs_init routine)
[3625]	24	#if defined key_nemocice_decomp
	25	USE ice_domain_size, only: nx_global, ny_global
	26	#endif
[7646]	27	! ! Stand Alone Observation operator modules
	28	USE sao_data
	29	USE sao_intp
	30	!
[13159]	31	USE in_out_manager ! I/O manager
[7646]	32	USE lib_mpp ! distributed memory computing
	33	USE mppini ! shared/distributed memory setting (mpp_init routine)
	34	USE lbcnfd , ONLY : isendto, nsndto, nfsloop, nfeloop ! Setup of north fold exchanges
	35	USE lib_fortran ! Fortran utilities (allows no signed zero when 'key_nosignedzero' defined)
[1412]	36	#if defined key_iomput
[7646]	37	USE xios ! xIOserver
[1359]	38	#endif
[268]	39
[2715]	40	IMPLICIT NONE
[3]	41	PRIVATE
	42
[4829]	43	PUBLIC nemo_gcm ! called by model.F90
[2496]	44	PUBLIC nemo_init ! needed by AGRIF
[3764]	45	PUBLIC nemo_alloc ! needed by TAM
[467]	46
[2498]	47	CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing
[1593]	48
[3]	49	!!----------------------------------------------------------------------
[9598]	50	!! NEMO/OCE 4.0 , NEMO Consortium (2018)
[2392]	51	!! $Id$
[10068]	52	!! Software governed by the CeCILL license (see ./LICENSE)
[3]	53	!!----------------------------------------------------------------------
	54	CONTAINS
	55
[4120]	56	SUBROUTINE nemo_gcm
	57	!!----------------------------------------------------------------------
	58	!! * SUBROUTINE offline_obs_oper *
	59	!!
	60	!! ** Purpose : To use NEMO components to interpolate model fields
	61	!! to observation space.
	62	!!
	63	!! ** Method : 1. Initialise NEMO
	64	!! 2. Initialise offline obs_oper
	65	!! 3. Cycle through match ups
	66	!! 4. Write results to file
	67	!!----------------------------------------------------------------------
[7646]	68	!
	69	CALL nemo_init ! Initialise NEMO
	70	!
	71	CALL sao_data_init ! Initialise Stand Alone Observation operator data
	72	!
	73	CALL dia_obs_init ! Initialise obs_operator
	74	!
	75	CALL sao_interp ! Interpolate to observation space
	76	!
	77	CALL dia_obs_wri ! Pipe to output files
	78	!
	79	CALL dia_obs_dealloc ! Reset the obs_oper between
	80	!
	81	IF(lk_mpp) CALL mppstop ! Safely stop MPI (end mpp communications)
	82	!
[4120]	83	END SUBROUTINE nemo_gcm
[389]	84
[4829]	85
[2496]	86	SUBROUTINE nemo_init
[389]	87	!!----------------------------------------------------------------------
[2496]	88	!! * ROUTINE nemo_init *
[389]	89	!!
[2496]	90	!! ** Purpose : initialization of the NEMO GCM
[389]	91	!!----------------------------------------------------------------------
[7646]	92	INTEGER :: ios, ilocal_comm ! local integer
[5600]	93	!
[12377]	94	NAMELIST/namctl/ sn_cfctl, nn_print, nn_ictls, nn_ictle, &
[10570]	95	& nn_isplt , nn_jsplt, nn_jctls, nn_jctle, &
[9019]	96	& ln_timing, ln_diacfl
[9436]	97	NAMELIST/namcfg/ ln_read_cfg, cn_domcfg, ln_closea, ln_write_cfg, cn_domcfg_out, ln_use_jattr
[3]	98	!!----------------------------------------------------------------------
[1593]	99	!
[5600]	100	cxios_context = 'nemo'
[2496]	101	!
[11536]	102	! !-------------------------------------------------!
	103	! ! set communicator & select the local rank !
	104	! ! must be done as soon as possible to get narea !
	105	! !-------------------------------------------------!
[1593]	106	!
[1412]	107	#if defined key_iomput
[2200]	108	IF( Agrif_Root() ) THEN
[5600]	109	IF( lk_oasis ) THEN
[11536]	110	CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis
	111	CALL xios_initialize( "not used" , local_comm =ilocal_comm ) ! send nemo communicator to xios
[5600]	112	ELSE
[11536]	113	CALL xios_initialize( "for_xios_mpi_id", return_comm=ilocal_comm ) ! nemo local communicator given by xios
[5600]	114	ENDIF
[2200]	115	ENDIF
[11536]	116	CALL mpp_start( ilocal_comm )
[532]	117	#else
[5600]	118	IF( lk_oasis ) THEN
	119	IF( Agrif_Root() ) THEN
[11536]	120	CALL cpl_init( "oceanx", ilocal_comm ) ! nemo local communicator given by oasis
[5600]	121	ENDIF
[11536]	122	CALL mpp_start( ilocal_comm )
[5600]	123	ELSE
[11536]	124	CALL mpp_start( )
[2236]	125	ENDIF
[532]	126	#endif
[11536]	127	!
	128	narea = mpprank + 1 ! mpprank: the rank of proc (0 --> mppsize -1 )
	129	lwm = (narea == 1) ! control of output namelists
	130	!
	131	! !---------------------------------------------------------------!
	132	! ! Open output files, reference and configuration namelist files !
	133	! !---------------------------------------------------------------!
	134	!
	135	! open ocean.output as soon as possible to get all output prints (including errors messages)
	136	IF( lwm ) CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
	137	! open reference and configuration namelist files
[12377]	138	CALL load_nml( numnam_ref, 'namelist_ref', -1, lwm )
	139	CALL load_nml( numnam_cfg, 'namelist_cfg', -1, lwm )
[11536]	140	IF( lwm ) CALL ctl_opn( numond, 'output.namelist.dyn', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
	141	! open /dev/null file to be able to supress output write easily
[13159]	142	IF( Agrif_Root() ) THEN
[11536]	143	CALL ctl_opn( numnul, '/dev/null', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE. )
[13159]	144	#ifdef key_agrif
	145	ELSE
	146	numnul = Agrif_Parent(numnul)
	147	#endif
	148	ENDIF
[11536]	149	!
	150	! !--------------------!
[12377]	151	! ! Open listing units ! -> need sn_cfctl from namctl to define lwp
[11536]	152	! !--------------------!
	153	!
	154	READ ( numnam_ref, namctl, IOSTAT = ios, ERR = 901 )
	155	901 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namctl in reference namelist' )
	156	READ ( numnam_cfg, namctl, IOSTAT = ios, ERR = 902 )
	157	902 IF( ios > 0 ) CALL ctl_nam ( ios , 'namctl in configuration namelist' )
	158	!
[12377]	159	! finalize the definition of namctl variables
[13159]	160	IF( narea < sn_cfctl%procmin .OR. narea > sn_cfctl%procmax .OR. MOD( narea - sn_cfctl%procmin, sn_cfctl%procincr ) /= 0 ) &
	161	& CALL nemo_set_cfctl( sn_cfctl, .FALSE. )
[11536]	162	!
[12377]	163	lwp = (narea == 1) .OR. sn_cfctl%l_oceout ! control of all listing output print
	164	!
[11536]	165	IF(lwp) THEN ! open listing units
[1593]	166	!
[11536]	167	IF( .NOT. lwm ) & ! alreay opened for narea == 1
	168	& CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, -1, .FALSE., narea )
[1593]	169	!
[1579]	170	WRITE(numout,*)
[11536]	171	WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - CMCC'
[1593]	172	WRITE(numout,*) ' NEMO team'
[5042]	173	WRITE(numout,*) ' Stand Alone Observation operator'
[10570]	174	WRITE(numout,*) ' NEMO version 4.0 (2019) '
[1579]	175	WRITE(numout,*)
[10570]	176	WRITE(numout,*) " ._ ._ ._ ._ ._ "
	177	WRITE(numout,*) " _.-._)`\_.-._)`\_.-._)`\_.-._)`\_.-._)`\_ "
[1579]	178	WRITE(numout,*)
[10570]	179	WRITE(numout,*) " o _, _, "
	180	WRITE(numout,*) " o .' ( .-' / "
	181	WRITE(numout,*) " o _/..._'. .' / "
	182	WRITE(numout,*) " ( o .-'` ` '-./ _.' "
	183	WRITE(numout,*) " ) ( o) ;= <_ ( "
	184	WRITE(numout,*) " ( '-.,\\__ __.-;`\ '. ) "
	185	WRITE(numout,*) " ) ) \) \|`\ \) '. \ ( ( "
	186	WRITE(numout,*) " ( ( \_/ '-._\ ) ) "
[11536]	187	WRITE(numout,*) " ) ) jgs ` ( ( "
[10570]	188	WRITE(numout,*) " ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ "
	189	WRITE(numout,*)
[1593]	190	!
[7646]	191	WRITE(numout,cform_aaa) ! Flag AAAAAAA
	192	!
[473]	193	ENDIF
[11536]	194	!
	195	IF(lwm) WRITE( numond, namctl )
	196	!
	197	! !------------------------------------!
	198	! ! Set global domain size parameters !
	199	! !------------------------------------!
	200	!
	201	READ ( numnam_ref, namcfg, IOSTAT = ios, ERR = 903 )
	202	903 IF( ios /= 0 ) CALL ctl_nam ( ios , 'namcfg in reference namelist' )
	203	READ ( numnam_cfg, namcfg, IOSTAT = ios, ERR = 904 )
	204	904 IF( ios > 0 ) CALL ctl_nam ( ios , 'namcfg in configuration namelist' )
	205	!
	206	IF( ln_read_cfg ) THEN ! Read sizes in domain configuration file
	207	CALL domain_cfg ( cn_cfg, nn_cfg, jpiglo, jpjglo, jpkglo, jperio )
	208	ELSE ! user-defined namelist
	209	CALL usr_def_nam( cn_cfg, nn_cfg, jpiglo, jpjglo, jpkglo, jperio )
	210	ENDIF
	211	!
	212	IF(lwm) WRITE( numond, namcfg )
	213	!
	214	! !-----------------------------------------!
	215	! ! mpp parameters and domain decomposition !
	216	! !-----------------------------------------!
	217	CALL mpp_init
[2715]	218
[7646]	219	! Now we know the dimensions of the grid and numout has been set: we can allocate arrays
[2715]	220	CALL nemo_alloc()
	221
[2496]	222	! !-------------------------------!
	223	! ! NEMO general initialization !
	224	! !-------------------------------!
[473]	225
[9436]	226	CALL nemo_ctl ! Control prints
[2382]	227	!
[9436]	228	! ! General initialization
	229	IF( ln_timing ) CALL timing_init ! timing
	230	IF( ln_timing ) CALL timing_start( 'nemo_init')
[3294]	231	!
[9019]	232	CALL phy_cst ! Physical constants
	233	CALL eos_init ! Equation of state
[12377]	234	CALL dom_init( Nbb, Nnn, Naa, 'SAO') ! Domain
[413]	235
[3294]	236
[12377]	237	IF( sn_cfctl%l_prtctl ) &
	238	& CALL prt_ctl_init ! Print control
[2027]	239
[12377]	240	CALL istate_init ! ocean initial state (Dynamics and tracers)
[2496]	241	END SUBROUTINE nemo_init
[467]	242
	243
[2496]	244	SUBROUTINE nemo_ctl
[467]	245	!!----------------------------------------------------------------------
[2496]	246	!! * ROUTINE nemo_ctl *
[467]	247	!!
[3764]	248	!! ** Purpose : control print setting
[467]	249	!!
[12377]	250	!! ** Method : - print namctl and namcfg information and check some consistencies
[467]	251	!!----------------------------------------------------------------------
[2442]	252	!
[2496]	253	IF(lwp) THEN ! control print
[531]	254	WRITE(numout,*)
[7646]	255	WRITE(numout,*) 'nemo_ctl: Control prints'
[9436]	256	WRITE(numout,*) '~~~~~~~~'
[1593]	257	WRITE(numout,*) ' Namelist namctl'
[10570]	258	WRITE(numout,*) ' sn_cfctl%l_runstat = ', sn_cfctl%l_runstat
	259	WRITE(numout,*) ' sn_cfctl%l_trcstat = ', sn_cfctl%l_trcstat
	260	WRITE(numout,*) ' sn_cfctl%l_oceout = ', sn_cfctl%l_oceout
	261	WRITE(numout,*) ' sn_cfctl%l_layout = ', sn_cfctl%l_layout
[12377]	262	WRITE(numout,*) ' sn_cfctl%l_prtctl = ', sn_cfctl%l_prtctl
	263	WRITE(numout,*) ' sn_cfctl%l_prttrc = ', sn_cfctl%l_prttrc
	264	WRITE(numout,*) ' sn_cfctl%l_oasout = ', sn_cfctl%l_oasout
[10570]	265	WRITE(numout,*) ' sn_cfctl%procmin = ', sn_cfctl%procmin
	266	WRITE(numout,*) ' sn_cfctl%procmax = ', sn_cfctl%procmax
	267	WRITE(numout,*) ' sn_cfctl%procincr = ', sn_cfctl%procincr
	268	WRITE(numout,*) ' sn_cfctl%ptimincr = ', sn_cfctl%ptimincr
[1601]	269	WRITE(numout,*) ' level of print nn_print = ', nn_print
	270	WRITE(numout,*) ' Start i indice for SUM control nn_ictls = ', nn_ictls
	271	WRITE(numout,*) ' End i indice for SUM control nn_ictle = ', nn_ictle
	272	WRITE(numout,*) ' Start j indice for SUM control nn_jctls = ', nn_jctls
	273	WRITE(numout,*) ' End j indice for SUM control nn_jctle = ', nn_jctle
	274	WRITE(numout,*) ' number of proc. following i nn_isplt = ', nn_isplt
	275	WRITE(numout,*) ' number of proc. following j nn_jsplt = ', nn_jsplt
[9019]	276	WRITE(numout,*) ' timing by routine ln_timing = ', ln_timing
	277	WRITE(numout,*) ' CFL diagnostics ln_diacfl = ', ln_diacfl
[531]	278	ENDIF
[2442]	279	!
[1601]	280	nprint = nn_print ! convert DOCTOR namelist names into OLD names
	281	nictls = nn_ictls
	282	nictle = nn_ictle
	283	njctls = nn_jctls
	284	njctle = nn_jctle
	285	isplt = nn_isplt
	286	jsplt = nn_jsplt
[4829]	287
	288	IF(lwp) THEN ! control print
	289	WRITE(numout,*)
	290	WRITE(numout,*) ' Namelist namcfg'
[7646]	291	WRITE(numout,*) ' read domain configuration file ln_read_cfg = ', ln_read_cfg
	292	WRITE(numout,*) ' filename to be read cn_domcfg = ', TRIM(cn_domcfg)
[9436]	293	WRITE(numout,*) ' keep closed seas in the domain (if exist) ln_closea = ', ln_closea
[10570]	294	WRITE(numout,*) ' create a configuration definition file ln_write_cfg = ', ln_write_cfg
[7646]	295	WRITE(numout,*) ' filename to be written cn_domcfg_out = ', TRIM(cn_domcfg_out)
	296	WRITE(numout,*) ' use file attribute if exists as i/p j-start ln_use_jattr = ', ln_use_jattr
[4829]	297	ENDIF
[9436]	298	IF( .NOT.ln_read_cfg ) ln_closea = .false. ! dealing possible only with a domcfg file
	299	!
[2442]	300	! ! Parameter control
[1593]	301	!
[12377]	302	IF( sn_cfctl%l_prtctl .OR. sn_cfctl%l_prttrc ) THEN ! sub-domain area indices for the control prints
[3294]	303	IF( lk_mpp .AND. jpnij > 1 ) THEN
[2496]	304	isplt = jpni ; jsplt = jpnj ; ijsplt = jpni*jpnj ! the domain is forced to the real split domain
[531]	305	ELSE
	306	IF( isplt == 1 .AND. jsplt == 1 ) THEN
[1593]	307	CALL ctl_warn( ' - isplt & jsplt are equal to 1', &
	308	& ' - the print control will be done over the whole domain' )
[531]	309	ENDIF
[1593]	310	ijsplt = isplt * jsplt ! total number of processors ijsplt
[531]	311	ENDIF
	312	IF(lwp) WRITE(numout,*)' - The total number of processors over which the'
	313	IF(lwp) WRITE(numout,*)' print control will be done is ijsplt : ', ijsplt
[1593]	314	!
	315	! ! indices used for the SUM control
	316	IF( nictls+nictle+njctls+njctle == 0 ) THEN ! print control done over the default area
[3764]	317	lsp_area = .FALSE.
[1593]	318	ELSE ! print control done over a specific area
[531]	319	lsp_area = .TRUE.
	320	IF( nictls < 1 .OR. nictls > jpiglo ) THEN
	321	CALL ctl_warn( ' - nictls must be 1<=nictls>=jpiglo, it is forced to 1' )
	322	nictls = 1
	323	ENDIF
	324	IF( nictle < 1 .OR. nictle > jpiglo ) THEN
	325	CALL ctl_warn( ' - nictle must be 1<=nictle>=jpiglo, it is forced to jpiglo' )
	326	nictle = jpiglo
	327	ENDIF
	328	IF( njctls < 1 .OR. njctls > jpjglo ) THEN
	329	CALL ctl_warn( ' - njctls must be 1<=njctls>=jpjglo, it is forced to 1' )
	330	njctls = 1
	331	ENDIF
	332	IF( njctle < 1 .OR. njctle > jpjglo ) THEN
	333	CALL ctl_warn( ' - njctle must be 1<=njctle>=jpjglo, it is forced to jpjglo' )
	334	njctle = jpjglo
	335	ENDIF
[1593]	336	ENDIF
	337	ENDIF
[2442]	338	!
[10570]	339	IF( 1._wp /= SIGN(1._wp,-0._wp) ) CALL ctl_stop( 'nemo_ctl: The intrinsec SIGN function follows f2003 standard.', &
	340	& 'Compile with key_nosignedzero enabled:', &
	341	& '--> add -Dkey_nosignedzero to the definition of %CPP in your arch file' )
[3764]	342	!
[2496]	343	END SUBROUTINE nemo_ctl
[467]	344
	345
[2496]	346	SUBROUTINE nemo_closefile
[467]	347	!!----------------------------------------------------------------------
[2496]	348	!! * ROUTINE nemo_closefile *
[467]	349	!!
	350	!! ** Purpose : Close the files
	351	!!----------------------------------------------------------------------
[1593]	352	!
	353	IF( lk_mpp ) CALL mppsync
	354	!
[1685]	355	CALL iom_close ! close all input/output files managed by iom_*
[1593]	356	!
[4829]	357	IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file
[9019]	358	IF( numrun /= -1 ) CLOSE( numrun ) ! run statistics file
[4829]	359	IF( lwm.AND.numond /= -1 ) CLOSE( numond ) ! oce output namelist
	360	IF( lwm.AND.numoni /= -1 ) CLOSE( numoni ) ! ice output namelist
	361	IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution)
	362	IF( numout /= 6 ) CLOSE( numout ) ! standard model output file
	363	IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports
	364	IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports
	365	IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports
[1593]	366	!
[2442]	367	numout = 6 ! redefine numout in case it is used after this point...
	368	!
[2496]	369	END SUBROUTINE nemo_closefile
[467]	370
[2715]	371
	372	SUBROUTINE nemo_alloc
	373	!!----------------------------------------------------------------------
	374	!! * ROUTINE nemo_alloc *
	375	!!
	376	!! ** Purpose : Allocate all the dynamic arrays of the OPA modules
	377	!!
	378	!! ** Method :
	379	!!----------------------------------------------------------------------
	380	USE diawri , ONLY: dia_wri_alloc
	381	USE dom_oce , ONLY: dom_oce_alloc
	382	!
	383	INTEGER :: ierr
	384	!!----------------------------------------------------------------------
	385	!
[3764]	386	ierr = oce_alloc () ! ocean
[2715]	387	ierr = ierr + dia_wri_alloc ()
	388	ierr = ierr + dom_oce_alloc () ! ocean domain
	389	!
[10425]	390	CALL mpp_sum( 'nemogcm', ierr )
[2715]	391	IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc : unable to allocate standard ocean arrays' )
	392	!
	393	END SUBROUTINE nemo_alloc
	394
[13159]	395	SUBROUTINE nemo_set_cfctl(sn_cfctl, setto )
[10570]	396	!!----------------------------------------------------------------------
	397	!! * ROUTINE nemo_set_cfctl *
	398	!!
	399	!! ** Purpose : Set elements of the output control structure to setto.
	400	!!
	401	!! ** Method : Note this routine can be used to switch on/off some
[13159]	402	!! types of output for selected areas.
[10570]	403	!!----------------------------------------------------------------------
[13159]	404	TYPE(sn_ctl), INTENT(inout) :: sn_cfctl
	405	LOGICAL , INTENT(in ) :: setto
[10570]	406	!!----------------------------------------------------------------------
[13159]	407	sn_cfctl%l_runstat = setto
	408	sn_cfctl%l_trcstat = setto
[10570]	409	sn_cfctl%l_oceout = setto
	410	sn_cfctl%l_layout = setto
[12377]	411	sn_cfctl%l_prtctl = setto
	412	sn_cfctl%l_prttrc = setto
	413	sn_cfctl%l_oasout = setto
[10570]	414	END SUBROUTINE nemo_set_cfctl
	415
[3]	416	!!======================================================================
[2496]	417	END MODULE nemogcm
[4829]	418

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