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launch_sasf.sh in NEMO/branches/2020/dev_r13648_ASINTER-04_laurent_bulk_ice/tests/STATION_ASF/EXPREF – NEMO

source: NEMO/branches/2020/dev_r13648_ASINTER-04_laurent_bulk_ice/tests/STATION_ASF/EXPREF/launch_sasf.sh @ 13893

Last change on this file since 13893 was 13893, checked in by laurent, 3 years ago

Improvements and better README for tests/STATION_ASF

  • Property svn:executable set to *
File size: 8.5 KB
Line 
1#!/bin/bash
2
3################################################################
4#
5# Script to launch a set of STATION_ASF simulations
6#
7#  Ocean-only version....
8#
9# L. Brodeau, 2020
10#
11################################################################
12
13CONFIG="STATION_ASF" ; # general name of the configuration
14CONFIG_BLD="STATION_ASF2" ; # name of config as build in NEMO... (directory inside "tests" actually contains the compiled test-case?)
15
16# Atmo + SSX forcing to use and sea-ice support?
17#     => FORCING: name of forcing
18#     => i_sea_ice: whether to compute fluxes over sea-ice as well
19#     => SFORC: string sufficient to copy relevant files as in "*${SFORC}*.nc"
20#FORCING="PAPA"                 ; i_sea_ice=0 ; SFORC="Station_PAPA_50N-145W"
21FORCING="ERA5_NorthGreenland" ; i_sea_ice=1 ; SFORC="ERA5_NorthGreenland_surface_84N_-36E_1h" ; # WITH ice/air flux computation
22#FORCING="ERA5_NorthGreenland" ; i_sea_ice=0 ; SFORC="ERA5_NorthGreenland_surface_84N_-36E_1h" ; # "ERA5_arctic" WITHOUT ice/air flux computation
23
24
25# Root directory NEMOGCM reference depository where to fetch compiled STATION_ASF nemo.exe + default namelists:
26NEMO_REF_DIR="`dirname ${PWD} | sed -e 's|/tests/STATION_ASF||g'`" ; # that should normally do the trick!
27
28# NEMOGCM root directory where to fetch compiled STATION_ASF nemo.exe:
29SASF_WRK_DIR="${NEMO_REF_DIR}/tests/${CONFIG_BLD}"
30
31# DATA_IN_DIR => Directory containing sea-surface + atmospheric forcings:
32DATA_IN_DIR="${NEMO_REF_DIR}/tests/${CONFIG}/input_data"
33
34# Directory where to run the simulation:
35PROD_DIR="${HOME}/tmp/${CONFIG}"
36
37# MPI launch command for your system
38# Even though we are running on 1 proc here, NEMO has likely been compiled with MPI,
39# if it's not the case then just leave "MPI_LAUNCH" void...
40MPI_LAUNCH="mpirun -n 1"
41
42####### End of normal user configurable section #######
43#================================================================================
44
45iconv_1d=1
46if [ "`which ncks`" = "" ]; then
47    echo
48    echo "WARNING: you do not seem to have NCO installed here... You should!"
49    echo "      => anyway! will do without, but output netCDF files will remaine 3x3 in space :( "
50    echo
51    iconv_1d=0
52    sleep 3
53fi
54
55HERE=`pwd`
56
57echo
58
59# Is the nemo.exe of STATION_ASF compiled with sea-ice support (SI3) ?
60i_si3=0
61FCPP="${SASF_WRK_DIR}/cpp_${CONFIG_BLD}.fcm"
62if [ ! -f ${FCPP} ]; then echo " Mhhh, we could not find 'cpp_STATION_ASF.fcm' into `dirname ${FCPP}` !"; exit; fi
63ca=`cat ${FCPP} | grep 'key_si3'`
64
65if [ "${ca}" = "" ]; then
66    echo " *** NEMO was NOT compiled with sea-ice support (SI3) !" ; echo
67    if [ ${i_sea_ice} -eq 1 ]; then
68        echo " ===> so you cannot request ice-air flux computation !"
69        echo "     ===> please set i_sea_ice=0 or compile STATION_ASF with CPP key 'key_si3' !"
70        echo ; exit
71    fi
72else
73    echo " *** NEMO was apparently compiled with sea-ice support (SI3) !" ; echo
74    i_si3=1
75fi
76
77# Ok things are a bit different whether we compute fluxes over open ocean only or open ocean + sea-ice
78
79DIR_F=`echo ${FORCING} | cut -d'_' -f1` ; # "ERA5_blabla" => "ERA5" !
80
81if [ ${i_sea_ice} -eq 1 ]; then
82    # OPEN-OCEAN/AIR + SEA-ICE/AIR flux computation
83    #   - simpler if we only use one Open-ocean/air algo (ECMWF)
84    LIST_OA_ALGOS="ECMWF" ;          # list of air-sea algorithms to test
85    LIST_IA_ALGOS="AN05 LG15 LU12 CSTC" ; # list of air-ice algorithms to test
86    DIR_NL=${DIR_F}/oce+ice ; # where to fetch the namelists from...
87else
88    # Only OPEN-OCEAN/AIR flux computation
89    LIST_OA_ALGOS="NCAR ECMWF COARE3p6 ANDREAS"; # list of air-sea algorithms to test
90    LIST_IA_ALGOS=""
91    DIR_NL=${DIR_F}/oce ; # where to fetch the namelists from...
92fi
93if [ ! -d ${DIR_NL} ]; then echo " Mhhh, ${DIR_NL} not found !"; exit; fi
94
95
96
97# NEMO executable to use is:
98NEMO_EXE="${SASF_WRK_DIR}/BLD/bin/nemo.exe"
99if [ ! -f ${NEMO_EXE} ]; then echo " Mhhh, no compiled 'nemo.exe' found into `dirname ${NEMO_EXE}` !"; exit; fi
100
101SASF_EXPREF=`pwd`  ; # STATION_ASF EXPREF directory from which to use namelists and XIOS xml files...
102
103CFGS_SHARED="${NEMO_REF_DIR}/cfgs/SHARED"
104if [ ! -d ${CFGS_SHARED} ]; then echo "PROBLEM!!! => could not find directory ${CFGS_SHARED} !"; exit; fi
105
106if [ ! -d ${DATA_IN_DIR} ]; then echo "PROBLEM!!! => could not find directory 'input_data' with input forcing..."; exit; fi
107
108cdt_cmpl="`\ls -l ${NEMO_EXE} | cut -d' ' -f 6,7,8`"
109
110echo "###########################################################"
111echo "#        S T A T I O N   A i r  -  S e a   F l u x        #"
112echo "###########################################################"
113echo
114echo "  * NEMO reference root directory is: ${NEMO_REF_DIR}"
115echo "  * STATION_ASF work directory is: ${SASF_WRK_DIR}"
116echo "       ==> NEMO EXE to use: ${NEMO_EXE}"
117echo "           ==> compiled: ${cdt_cmpl} !"
118echo
119echo "  * Input forcing data into: ${DATA_IN_DIR}"
120echo "  * Production will be done into: ${PROD_DIR}"
121echo "  * Directory in which namelists and xml files are fetched:"
122echo "       ==> ${SASF_EXPREF}"
123echo
124sleep 2
125
126mkdir -p ${PROD_DIR}
127
128rsync -avP ${NEMO_EXE}          ${PROD_DIR}/
129ln -sf      ${NEMO_EXE}          ${PROD_DIR}/nemo.exe.lnk
130
131
132# XIOS xml file
133################
134
135list_xml_ref="field_def_nemo-oce.xml domain_def_nemo.xml grid_def_nemo.xml"
136list_xml_cfg="iodef.xml file_def_nemo-oce.xml"
137fcntxt="context_nemo_OCE.xml"
138if [ ${i_sea_ice} -eq 1 ]; then
139    list_xml_ref+=" field_def_nemo-ice.xml"
140    list_xml_cfg+=" file_def_nemo-ice.xml"
141    fcntxt="context_nemo_OCE+ICE.xml"
142fi
143
144# The "context_nemo.xml" file:
145if [ ! -f ${SASF_EXPREF}/${fcntxt} ]; then echo " Mhhh, ${fcntxt} not found into ${SASF_EXPREF} !"; exit; fi
146rsync -avPL ${SASF_EXPREF}/${fcntxt} ${PROD_DIR}/context_nemo.xml
147
148# All remaining "*.xml" files:
149for ff in ${list_xml_cfg} ; do
150    if [ ! -f ${SASF_EXPREF}/${ff} ]; then echo " Mhhh, ${ff} not found into ${SASF_EXPREF} !"; exit; fi
151    rsync -avPL ${SASF_EXPREF}/${ff} ${PROD_DIR}/
152done
153for ff in ${list_xml_ref} ; do
154    if [ ! -f ${CFGS_SHARED}/${ff} ]; then echo " Mhhh, ${ff} not found into ${CFGS_SHARED} !"; exit; fi
155    rsync -avPL ${CFGS_SHARED}/${ff} ${PROD_DIR}/
156done
157
158
159# Copy forcing to work directory:
160echo ; echo "Forcing files to use:"
161\ls -l ${DATA_IN_DIR}/*${SFORC}*.nc
162echo
163rsync -avPL ${DATA_IN_DIR}/*${SFORC}*.nc ${PROD_DIR}/
164echo; echo
165
166
167if [ "${LIST_IA_ALGOS}" = "" ]; then LIST_IA_ALGOS="none"; fi
168
169echo
170
171for OA_A in ${LIST_OA_ALGOS}; do
172    for IA_A in ${LIST_IA_ALGOS}; do
173
174        echo       
175        CASE="${OA_A}"
176        if [ ${i_sea_ice} -eq 1 ] && [ "${IA_A}" != "none" ]; then CASE="${OA_A}-${IA_A}"; fi
177
178        echo ; echo
179        echo "======================================================================="
180        echo " Going for experiment: ${CASE} bulk param. with ${FORCING} forcing "
181        echo "======================================================================="
182        echo
183
184        scase=`echo "${CASE}" | tr '[:upper:]' '[:lower:]'`
185
186        rm -f ${PROD_DIR}/namelist_cfg
187        fnml="${SASF_EXPREF}/${DIR_NL}/namelist_${scase}_cfg"
188        if [ ! -f ${fnml} ]; then echo " Mhhh, test namelist ${fnml} not found !"; exit; fi
189
190        echo "   ===> namelist to use is: ${DIR_NL}/namelist_${scase}_cfg !"; echo
191       
192        # The namelists:
193        #rsync -avPL ${fnml} ${PROD_DIR}/namelist_cfg
194        sed -e "s|<FORCING>|${FORCING}|g" -e "s|<SFORC>|${SFORC}|g" ${fnml} > ${PROD_DIR}/namelist_cfg
195
196        rsync -avPL ${CFGS_SHARED}/namelist_ref                    ${PROD_DIR}/namelist_ref
197        if [ ${i_sea_ice} -eq 1 ]; then
198            rsync -avPL ${SASF_EXPREF}/namelist_ice_cfg ${PROD_DIR}/namelist_ice_cfg
199            rsync -avPL ${CFGS_SHARED}/namelist_ice_ref ${PROD_DIR}/namelist_ice_ref
200        fi
201   
202        cd ${PROD_DIR}/
203        echo
204        echo "Launching NEMO ! (==> ${MPI_LAUNCH} ./nemo.exe)"
205        ${MPI_LAUNCH} ./nemo.exe 1>out_nemo.out 2>err_nemo.err
206        echo "Done!"
207        echo
208
209        # Moving output files:
210        mkdir -p output
211        mv -f ${CONFIG}-${CASE}_${FORCING}_*_grid*.nc output/
212        if [ ${i_sea_ice} -eq 1 ]; then mv -f ${CONFIG}-${CASE}_${FORCING}_*_icemod.nc output/; fi
213
214        # Saving logs:
215        mkdir -p ${CASE}_${FORCING}_log
216        mv -f *.out *.err ocean.output output.namelist.dyn ${CASE}_${FORCING}_log/
217
218        if [ ${iconv_1d} -eq 1 ]; then
219        # Making 3x3 to 1 !
220        cd output/
221        list=`\ls ${CONFIG}*${CASE}_${FORCING}_*.nc | grep -v '_restart_'| grep -v '_1p.nc'`
222        for ff in ${list}; do
223            echo
224            fn=`echo ${ff} | sed -e "s|.nc|_1p.nc|g"`
225            CMD="ncks -O -d x,1 -d y,1 ${ff} -o ${fn}"
226            echo " *** ${CMD}"; ${CMD}
227            echo
228        done
229        fi
230
231    done
232
233done
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