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iom.F90 in NEMO/branches/2020/test_12905_xios_restart/src/OCE/IOM – NEMO

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source: NEMO/branches/2020/test_12905_xios_restart/src/OCE/IOM/iom.F90 @ 13023

Last change on this file since 13023 was 13023, checked in by andmirek, 4 years ago
Ticket #2462 update test branch with change 13022 in development branch
Property svn:keywords set to `Id`
File size: 124.8 KB

Rev	Line
[544]	1	MODULE iom
[9019]	2	!!======================================================================
[544]	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
[9019]	5	!!======================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[6140]	10	!! 3.6 ! 2014-15 DIMG format removed
[7646]	11	!! 3.6 ! 2015-15 (J. Harle) Added procedure to read REAL attributes
[9019]	12	!! 4.0 ! 2017-11 (M. Andrejczuk) Extend IOM interface to write any 3D fields
	13	!!----------------------------------------------------------------------
[544]	14
[9019]	15	!!----------------------------------------------------------------------
[544]	16	!! iom_open : open a file read only
	17	!! iom_close : close a file or all files opened by iom
	18	!! iom_get : read a field (interfaced to several routines)
	19	!! iom_varid : get the id of a variable in a file
	20	!! iom_rstput : write a field in a restart file (interfaced to several routines)
[9019]	21	!!----------------------------------------------------------------------
[544]	22	USE dom_oce ! ocean space and time domain
[3764]	23	USE c1d ! 1D vertical configuration
[3294]	24	USE flo_oce ! floats module declarations
[679]	25	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	26	USE iom_def ! iom variables definitions
	27	USE iom_nf90 ! NetCDF format with native NetCDF library
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[12377]	31	USE sbc_oce , ONLY : nn_fsbc, ght_abl, ghw_abl, e3t_abl, e3w_abl, jpka, jpkam1
[9019]	32	USE icb_oce , ONLY : nclasses, class_num ! !: iceberg classes
[9570]	33	#if defined key_si3
[9019]	34	USE ice , ONLY : jpl
[4691]	35	#endif
[1725]	36	USE domngb ! ocean space and time domain
	37	USE phycst ! physical constants
	38	USE dianam ! build name of file
[3695]	39	USE xios
[1359]	40	# endif
[4148]	41	USE ioipsl, ONLY : ju2ymds ! for calendar
[4152]	42	USE crs ! Grid coarsening
[10222]	43	#if defined key_top
	44	USE trc, ONLY : profsed
	45	#endif
[9367]	46	USE lib_fortran
[12377]	47	USE diu_bulk, ONLY : ln_diurnal_only, ln_diurnal
[12950]	48	USE iom_nf90
	49	USE netcdf
[1359]	50
[544]	51	IMPLICIT NONE
[556]	52	PUBLIC ! must be public to be able to access iom_def through iom
[550]	53
[1457]	54	#if defined key_iomput
[1725]	55	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	56	#else
	57	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	58	#endif
[12377]	59	PUBLIC iom_init, iom_init_closedef, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get, iom_get_var
[10522]	60	PUBLIC iom_chkatt, iom_getatt, iom_putatt, iom_getszuld, iom_rstput, iom_delay_rst, iom_put
[12377]	61	PUBLIC iom_use, iom_context_finalize, iom_update_file_name, iom_miss_val
[544]	62
[752]	63	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	64	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[12276]	65	PRIVATE iom_p1d, iom_p2d, iom_p3d, iom_p4d
[1412]	66	#if defined key_iomput
[4148]	67	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
[12377]	68	PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_sdate
[13023]	69	PRIVATE iom_set_rst_context, iom_set_vars_active
[1359]	70	# endif
[12950]	71	PRIVATE iom_set_rstw_active
[752]	72
[544]	73	INTERFACE iom_get
[550]	74	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	75	END INTERFACE
[2528]	76	INTERFACE iom_getatt
[10425]	77	MODULE PROCEDURE iom_g0d_iatt, iom_g1d_iatt, iom_g0d_ratt, iom_g1d_ratt, iom_g0d_catt
[2528]	78	END INTERFACE
[7646]	79	INTERFACE iom_putatt
[10425]	80	MODULE PROCEDURE iom_p0d_iatt, iom_p1d_iatt, iom_p0d_ratt, iom_p1d_ratt, iom_p0d_catt
[7646]	81	END INTERFACE
[544]	82	INTERFACE iom_rstput
[550]	83	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	84	END INTERFACE
[9802]	85	INTERFACE iom_put
[12276]	86	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d, iom_p4d
[9802]	87	END INTERFACE iom_put
	88
[12377]	89	!! * Substitutions
	90	# include "do_loop_substitute.h90"
[544]	91	!!----------------------------------------------------------------------
[9598]	92	!! NEMO/OCE 4.0 , NEMO Consortium (2018)
[1152]	93	!! $Id$
[10068]	94	!! Software governed by the CeCILL license (see ./LICENSE)
[544]	95	!!----------------------------------------------------------------------
	96	CONTAINS
	97
[12961]	98	SUBROUTINE iom_init( cdname, fname, idfp, ld_tmppatch, ld_closedef )
[1359]	99	!!----------------------------------------------------------------------
	100	!! * ROUTINE *
	101	!!
	102	!! ** Purpose :
	103	!!
	104	!!----------------------------------------------------------------------
[9903]	105	CHARACTER(len=*), INTENT(in) :: cdname
[9367]	106	CHARACTER(len=*), OPTIONAL, INTENT(in) :: fname
[12961]	107	INTEGER , OPTIONAL, INTENT(in) :: idfp ! pointer to netcdf file for restart reading with XIOS
[9903]	108	LOGICAL , OPTIONAL, INTENT(in) :: ld_tmppatch
[12377]	109	LOGICAL , OPTIONAL, INTENT(in) :: ld_closedef
[1412]	110	#if defined key_iomput
[9019]	111	!
[7646]	112	TYPE(xios_duration) :: dtime = xios_duration(0, 0, 0, 0, 0, 0)
	113	TYPE(xios_date) :: start_date
[9367]	114	CHARACTER(len=lc) :: clname
[12276]	115	INTEGER :: irefyear, irefmonth, irefday
[12597]	116	INTEGER :: ji
[12957]	117	LOGICAL :: llrst_context ! is context related to restart
[12961]	118	LOGICAL :: llrstr, llrstw
[12957]	119	INTEGER :: inum
[5415]	120	!
[7646]	121	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zt_bnds, zw_bnds
[12377]	122	REAL(wp), DIMENSION(2,jpkam1) :: za_bnds ! ABL vertical boundaries
[9903]	123	LOGICAL :: ll_tmppatch = .TRUE. !: seb: patch before we remove periodicity
	124	INTEGER :: nldi_save, nlei_save !: and close boundaries in output files
	125	INTEGER :: nldj_save, nlej_save !:
[12914]	126	LOGICAL :: ll_closedef
[1359]	127	!!----------------------------------------------------------------------
[9019]	128	!
[9802]	129	! seb: patch before we remove periodicity and close boundaries in output files
[9903]	130	IF( PRESENT(ld_tmppatch) ) THEN ; ll_tmppatch = ld_tmppatch
	131	ELSE ; ll_tmppatch = .TRUE.
	132	ENDIF
	133	IF ( ll_tmppatch ) THEN
[9802]	134	nldi_save = nldi ; nlei_save = nlei
	135	nldj_save = nldj ; nlej_save = nlej
	136	IF( nimpp == 1 ) nldi = 1
	137	IF( nimpp + jpi - 1 == jpiglo ) nlei = jpi
	138	IF( njmpp == 1 ) nldj = 1
	139	IF( njmpp + jpj - 1 == jpjglo ) nlej = jpj
	140	ENDIF
[12914]	141	!
	142	ll_closedef = .TRUE.
[12377]	143	IF ( PRESENT(ld_closedef) ) ll_closedef = ld_closedef
[9802]	144	!
[7646]	145	ALLOCATE( zt_bnds(2,jpk), zw_bnds(2,jpk) )
[9019]	146	!
[12957]	147	IF(lwp) write(numout, *) 'TEST IOM_INIT: ', TRIM(cdname),' File: ', TRIM(fname)
	148	IF(lwp) CALL FLUSH(numout)
[4152]	149	clname = cdname
	150	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(cdname)
[9570]	151	CALL xios_context_initialize(TRIM(clname), mpi_comm_oce)
[4152]	152	CALL iom_swap( cdname )
[1359]	153
[12961]	154	llrstr = (TRIM(cdname) == TRIM(crxios_context)) .OR. (TRIM(cdname) == TRIM(crixios_context))
	155	llrstr = llrstr .OR. (TRIM(cdname) == TRIM(crtxios_context))
	156	llrstr = llrstr .OR. (TRIM(cdname) == TRIM(crsxios_context))
	157
	158	llrstw = (TRIM(cdname) == TRIM(cwxios_context)) .OR. (TRIM(cdname) == TRIM(cwixios_context))
	159	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwtxios_context))
	160	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwsxios_context))
	161
	162	llrst_context = llrstr .OR. llrstw
	163
[7646]	164	! Calendar type is now defined in xml file
[12276]	165	IF (.NOT.(xios_getvar('ref_year' ,irefyear ))) irefyear = 1900
	166	IF (.NOT.(xios_getvar('ref_month',irefmonth))) irefmonth = 01
	167	IF (.NOT.(xios_getvar('ref_day' ,irefday ))) irefday = 01
	168
[1725]	169	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[12276]	170	CASE ( 1) ; CALL xios_define_calendar( TYPE = "Gregorian", time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	171	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	172	CASE ( 0) ; CALL xios_define_calendar( TYPE = "NoLeap" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	173	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[12276]	174	CASE (30) ; CALL xios_define_calendar( TYPE = "D360" , time_origin = xios_date(irefyear,irefmonth,irefday,00,00,00), &
[7646]	175	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[1725]	176	END SELECT
[1359]	177
	178	! horizontal grid definition
[9367]	179	IF(.NOT.llrst_context) CALL set_scalar
[9019]	180	!
[5407]	181	IF( TRIM(cdname) == TRIM(cxios_context) ) THEN
[9984]	182	CALL set_grid( "T", glamt, gphit, .FALSE., .FALSE. )
	183	CALL set_grid( "U", glamu, gphiu, .FALSE., .FALSE. )
	184	CALL set_grid( "V", glamv, gphiv, .FALSE., .FALSE. )
	185	CALL set_grid( "W", glamt, gphit, .FALSE., .FALSE. )
[5385]	186	CALL set_grid_znl( gphit )
[5415]	187	!
	188	IF( ln_cfmeta ) THEN ! Add additional grid metadata
[5836]	189	CALL iom_set_domain_attr("grid_T", area = e1e2t(nldi:nlei, nldj:nlej))
	190	CALL iom_set_domain_attr("grid_U", area = e1e2u(nldi:nlei, nldj:nlej))
	191	CALL iom_set_domain_attr("grid_V", area = e1e2v(nldi:nlei, nldj:nlej))
	192	CALL iom_set_domain_attr("grid_W", area = e1e2t(nldi:nlei, nldj:nlej))
[5415]	193	CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit )
	194	CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu )
	195	CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv )
	196	CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit )
	197	ENDIF
[4152]	198	ENDIF
[9019]	199	!
[5407]	200	IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN
[4152]	201	CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain
	202	!
[9984]	203	CALL set_grid( "T", glamt_crs, gphit_crs, .FALSE., .FALSE. )
	204	CALL set_grid( "U", glamu_crs, gphiu_crs, .FALSE., .FALSE. )
	205	CALL set_grid( "V", glamv_crs, gphiv_crs, .FALSE., .FALSE. )
	206	CALL set_grid( "W", glamt_crs, gphit_crs, .FALSE., .FALSE. )
[5385]	207	CALL set_grid_znl( gphit_crs )
[4152]	208	!
	209	CALL dom_grid_glo ! Return to parent grid domain
[5415]	210	!
[9367]	211	IF( ln_cfmeta .AND. .NOT. llrst_context) THEN ! Add additional grid metadata
[5415]	212	CALL iom_set_domain_attr("grid_T", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	213	CALL iom_set_domain_attr("grid_U", area = e1u_crs(nldi:nlei, nldj:nlej) * e2u_crs(nldi:nlei, nldj:nlej))
	214	CALL iom_set_domain_attr("grid_V", area = e1v_crs(nldi:nlei, nldj:nlej) * e2v_crs(nldi:nlei, nldj:nlej))
	215	CALL iom_set_domain_attr("grid_W", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	216	CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	217	CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs )
	218	CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs )
	219	CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	220	ENDIF
[4152]	221	ENDIF
[9019]	222	!
[1359]	223	! vertical grid definition
[9367]	224	IF(.NOT.llrst_context) THEN
[12377]	225	CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
	226	CALL iom_set_axis_attr( "depthu", paxis = gdept_1d )
	227	CALL iom_set_axis_attr( "depthv", paxis = gdept_1d )
	228	CALL iom_set_axis_attr( "depthw", paxis = gdepw_1d )
[9367]	229
[12377]	230	! ABL
	231	IF( .NOT. ALLOCATED(ght_abl) ) THEN ! force definition for xml files (xios)
	232	ALLOCATE( ght_abl(jpka), ghw_abl(jpka), e3t_abl(jpka), e3w_abl(jpka) ) ! default allocation needed by iom
	233	ght_abl(:) = -1._wp ; ghw_abl(:) = -1._wp
	234	e3t_abl(:) = -1._wp ; e3w_abl(:) = -1._wp
	235	ENDIF
	236	CALL iom_set_axis_attr( "ght_abl", ght_abl(2:jpka) )
	237	CALL iom_set_axis_attr( "ghw_abl", ghw_abl(2:jpka) )
	238
[9367]	239	! Add vertical grid bounds
[12597]	240	zt_bnds(2,: ) = gdept_1d(:)
	241	zt_bnds(1,2:jpk ) = gdept_1d(1:jpkm1)
	242	zt_bnds(1,1 ) = gdept_1d(1) - e3w_1d(1)
	243	zw_bnds(1,: ) = gdepw_1d(:)
	244	zw_bnds(2,1:jpkm1) = gdepw_1d(2:jpk)
	245	zw_bnds(2,jpk: ) = gdepw_1d(jpk) + e3t_1d(jpk)
[12377]	246	CALL iom_set_axis_attr( "deptht", bounds=zw_bnds )
	247	CALL iom_set_axis_attr( "depthu", bounds=zw_bnds )
	248	CALL iom_set_axis_attr( "depthv", bounds=zw_bnds )
	249	CALL iom_set_axis_attr( "depthw", bounds=zt_bnds )
	250
	251	! ABL
	252	za_bnds(1,:) = ghw_abl(1:jpkam1)
	253	za_bnds(2,:) = ghw_abl(2:jpka )
	254	CALL iom_set_axis_attr( "ght_abl", bounds=za_bnds )
	255	za_bnds(1,:) = ght_abl(2:jpka )
	256	za_bnds(2,:) = ght_abl(2:jpka ) + e3w_abl(2:jpka)
	257	CALL iom_set_axis_attr( "ghw_abl", bounds=za_bnds )
	258
[9580]	259	CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,jpnfl) /) )
[9570]	260	# if defined key_si3
[9367]	261	CALL iom_set_axis_attr( "ncatice", (/ (REAL(ji,wp), ji=1,jpl) /) )
	262	! SIMIP diagnostics (4 main arctic straits)
	263	CALL iom_set_axis_attr( "nstrait", (/ (REAL(ji,wp), ji=1,4) /) )
[9019]	264	# endif
[10222]	265	#if defined key_top
[10817]	266	IF( ALLOCATED(profsed) ) CALL iom_set_axis_attr( "profsed", paxis = profsed )
[10222]	267	#endif
[9367]	268	CALL iom_set_axis_attr( "icbcla", class_num )
[10817]	269	CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) ) ! strange syntaxe and idea...
[12276]	270	CALL iom_set_axis_attr( "iax_26C", (/ REAL(26,wp) /) ) ! strange syntaxe and idea...
[10817]	271	CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) ) ! strange syntaxe and idea...
[12276]	272	CALL iom_set_axis_attr( "basin" , (/ (REAL(ji,wp), ji=1,5) /) )
[9367]	273	ENDIF
	274	!
[1725]	275	! automatic definitions of some of the xml attributs
[12957]	276	IF(lwp) write(numout, *) 'TEST IOM_INIT: ', TRIM(cdname), TRIM(cdname) == TRIM(crixios_context)
	277	IF(lwp) CALL FLUSH(numout)
[12961]	278	IF(llrstr) THEN
	279	IF(PRESENT(idfp)) THEN
	280	CALL iom_set_rst_context(.TRUE.)
	281	!set which fields will be read from restart file
[13023]	282	CALL iom_set_vars_active(fname, idfp)
[12957]	283	ELSE
[12961]	284	CALL ctl_stop( 'iom_init:', 'restart read with XIOS: missing pointer to NETCDF file' )
[12957]	285	ENDIF
[12961]	286	ELSE IF(llrstw) THEN
[12950]	287	CALL iom_set_rstw_file(fname)
[9367]	288	ELSE
	289	CALL set_xmlatt
	290	ENDIF
[9019]	291	!
[12377]	292	! set time step length
[12489]	293	dtime%second = rn_Dt
[9019]	294	CALL xios_set_timestep( dtime )
	295	!
[12377]	296	! conditional closure of context definition
	297	IF ( ll_closedef ) CALL iom_init_closedef
	298	!
[7646]	299	DEALLOCATE( zt_bnds, zw_bnds )
[9019]	300	!
[9903]	301	IF ( ll_tmppatch ) THEN
[9802]	302	nldi = nldi_save ; nlei = nlei_save
	303	nldj = nldj_save ; nlej = nlej_save
	304	ENDIF
[1359]	305	#endif
[9019]	306	!
[1359]	307	END SUBROUTINE iom_init
	308
[12950]	309	SUBROUTINE iom_init_closedef(cdname)
[12377]	310	!!----------------------------------------------------------------------
	311	!! * SUBROUTINE iom_init_closedef *
	312	!!----------------------------------------------------------------------
	313	!!
	314	!! ** Purpose : Closure of context definition
	315	!!
	316	!!----------------------------------------------------------------------
[12950]	317	CHARACTER(len=*), OPTIONAL, INTENT(IN) :: cdname
	318	#if defined key_iomput
[12957]	319	LOGICAL :: llrstw
	320
	321	IF(lwp) write(numout, *) 'XIOS CLOSE definitions for: ', TRIM(cdname)
	322	llrstw = .FALSE.
[12961]	323	IF(PRESENT(cdname)) THEN
	324	llrstw = (TRIM(cdname) == TRIM(cwxios_context))
	325	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwixios_context))
	326	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwtxios_context))
	327	llrstw = llrstw .OR. (TRIM(cdname) == TRIM(cwsxios_context))
[12957]	328	ENDIF
	329
	330	IF( llrstw ) THEN
[12950]	331	!set names of the fields in restart file IF using XIOS to write data
	332	CALL iom_set_rst_context(.FALSE.)
[12961]	333	CALL xios_close_context_definition()
	334	ELSE
	335	CALL xios_close_context_definition()
	336	CALL xios_update_calendar( 0 )
[12950]	337	ENDIF
[12377]	338	#else
	339	IF( .FALSE. ) WRITE(numout,*) 'iom_init_closedef: should not see this' ! useless statement to avoid compilation warnings
	340	#endif
	341
	342	END SUBROUTINE iom_init_closedef
	343
[13023]	344	SUBROUTINE iom_set_vars_active(cdfname, idnum)
[9367]	345	!!---------------------------------------------------------------------
[13023]	346	!! * SUBROUTINE iom_set_vars_active *
[9367]	347	!!
[13023]	348	!! ** Purpose : define filename in XIOS context for reading file,
	349	!! enable variables present in a file for reading with XIOS
	350	!! id of the file is assumed to be rrestart.
[9367]	351	!!---------------------------------------------------------------------
	352
[12957]	353	CHARACTER(len=*), INTENT(IN) :: cdfname
	354	INTEGER , INTENT(IN) :: idnum
[9535]	355	#if defined key_iomput
[12950]	356	INTEGER :: ndims, nvars, natts, unlimitedDimId, dimlen, xtype,mdims
	357	TYPE(xios_field) :: field_hdl
	358	TYPE(xios_file) :: file_hdl
	359	TYPE(xios_filegroup) :: filegroup_hdl
	360	INTEGER :: dimids(4), jv,i, idim
	361	CHARACTER(LEN=256) :: clinfo ! info character
	362	INTEGER, ALLOCATABLE :: indimlens(:)
	363	CHARACTER(LEN=nf90_max_name), ALLOCATABLE :: indimnames(:)
	364	CHARACTER(LEN=nf90_max_name) :: dimname, varname
	365	LOGICAL :: lmeta
[9367]	366
[12950]	367	meta(1) = "nav_lat"
	368	meta(2) = "nav_lon"
	369	meta(3) = "nav_lev"
	370	meta(4) = "time_instant"
	371	meta(5) = "time_instant_bounds"
	372	meta(6) = "time_counter"
	373	meta(7) = "time_counter_bounds"
	374	meta(8) = "x"
	375	meta(9) = "y"
	376	meta(10) = "numcat"
	377
[13023]	378	clinfo = ' iom_set_vars_active, file: '//TRIM(cdfname)
[12950]	379
[12957]	380	IF(lwp) write(numout, *) TRIM(clinfo)
	381	IF(lwp) CALL FLUSH(numout)
[9367]	382	!set name of the restart file and enable available fields
	383	CALL xios_get_handle("file_definition", filegroup_hdl )
	384	CALL xios_add_child(filegroup_hdl, file_hdl, 'rrestart')
[12957]	385	CALL xios_set_file_attr( "rrestart", name=trim(cdfname), type="one_file", &
[9367]	386	par_access="collective", enabled=.TRUE., mode="read", &
	387	output_freq=xios_timestep)
	388
[12961]	389	CALL iom_nf90_check( nf90_inquire(idnum, ndims, nvars, natts ), clinfo )
[12950]	390	ALLOCATE(indimlens(ndims), indimnames(ndims))
[12961]	391	CALL iom_nf90_check( nf90_inquire(idnum, unlimitedDimId = unlimitedDimId ), clinfo )
[9367]	392
[12950]	393	DO idim = 1, ndims
[12961]	394	CALL iom_nf90_check( nf90_inquire_dimension(idnum, idim, dimname, dimlen ), clinfo )
[12950]	395	indimlens(idim) = dimlen
	396	indimnames(idim) = dimname
	397	ENDDO
[9367]	398
[12950]	399	DO jv =1, nvars
	400	lmeta = .FALSE.
[12961]	401	CALL iom_nf90_check( nf90_inquire_variable(idnum, jv, varname, xtype, ndims, dimids, natts ), clinfo )
[12950]	402	DO i = 1, NMETA
	403	IF(TRIM(varname) == TRIM(meta(i))) THEN
	404	lmeta = .TRUE.
	405	ENDIF
	406	ENDDO
	407	IF(.NOT.lmeta) THEN
	408	CALL xios_add_child(file_hdl, field_hdl, TRIM(varname))
	409	mdims = ndims
[9367]	410
[12950]	411	IF(ANY(dimids(1:ndims) == unlimitedDimId)) THEN
	412	mdims = mdims - 1
	413	ENDIF
[9367]	414
[12950]	415	IF(mdims == 3) THEN
	416	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
[13023]	417	domain_ref="grid_N", axis_ref=TRIM(iom_axis(indimlens(dimids(mdims)))), &
[12950]	418	prec = 8, operation = "instant")
	419	ELSEIF(mdims == 2) THEN
	420	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	421	domain_ref="grid_N", prec = 8, operation = "instant")
	422	ELSEIF(mdims == 1) THEN
	423	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
[13023]	424	axis_ref=TRIM(iom_axis(indimlens(dimids(mdims)))), prec = 8, operation = "instant")
[12950]	425	ELSEIF(mdims == 0) THEN
	426	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(varname), &
	427	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	428	ELSE
[13023]	429	WRITE(ctmp1,*) 'iom_set_vars_active: variable ', TRIM(varname) ,' incorrect number of dimensions'
	430	CALL ctl_stop( 'iom_set_vars_active:', ctmp1 )
[12950]	431	ENDIF
	432	ENDIF
	433	ENDDO
	434	DEALLOCATE(indimlens, indimnames)
	435	#endif
[13023]	436	END SUBROUTINE iom_set_vars_active
[9367]	437
[12950]	438	SUBROUTINE iom_set_rstw_file(cdrst_file)
[9367]	439	!!---------------------------------------------------------------------
[12950]	440	!! * SUBROUTINE iom_set_rstw_file *
[9367]	441	!!
	442	!! ** Purpose : define file name in XIOS context for writing restart
	443	!!---------------------------------------------------------------------
	444	CHARACTER(len=*) :: cdrst_file
	445	#if defined key_iomput
	446	TYPE(xios_file) :: file_hdl
	447	TYPE(xios_filegroup) :: filegroup_hdl
	448	INTEGER :: i
	449	CHARACTER(lc) :: clpath
	450
	451	!set name of the restart file and enable available fields
	452	IF(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS write) to: ',cdrst_file
[12957]	453	IF(lwp) CALL FLUSH(numout)
[9367]	454	CALL xios_get_handle("file_definition", filegroup_hdl )
	455	CALL xios_add_child(filegroup_hdl, file_hdl, 'wrestart')
	456	IF(nxioso.eq.1) THEN
	457	CALL xios_set_file_attr( "wrestart", type="one_file", enabled=.TRUE.,&
	458	mode="write", output_freq=xios_timestep)
	459	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in one_file mode'
	460	ELSE
	461	CALL xios_set_file_attr( "wrestart", type="multiple_file", enabled=.TRUE.,&
	462	mode="write", output_freq=xios_timestep)
	463	if(lwp) write(numout,*) 'OPEN ', trim(cdrst_file), ' in multiple_file mode'
	464	ENDIF
	465	CALL xios_set_file_attr( "wrestart", name=trim(cdrst_file))
[12950]	466	#endif
	467	END SUBROUTINE iom_set_rstw_file
	468
	469
	470	SUBROUTINE iom_set_rstw_active(sdfield, rd0, rd1, rd2, rd3)
	471	!!---------------------------------------------------------------------
	472	!! * SUBROUTINE iom_set_rstw_active *
	473	!!
	474	!! ** Purpose : define file name in XIOS context for writing restart
	475	!! enable variables present in restart file for writing
	476	!!---------------------------------------------------------------------
	477	!sets enabled = .TRUE. for each field in restart file
	478	CHARACTER(len = *), INTENT(IN) :: sdfield
	479	REAL(wp), OPTIONAL, INTENT(IN) :: rd0
	480	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:) :: rd1
	481	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:, :) :: rd2
	482	REAL(wp), OPTIONAL, INTENT(IN), DIMENSION(:, :, :) :: rd3
	483	#if defined key_iomput
	484	TYPE(xios_field) :: field_hdl
	485	TYPE(xios_file) :: file_hdl
	486	INTEGER :: i
	487	CHARACTER(lc) :: clpath
	488	CHARACTER(len=1024) :: fname
	489	CHARACTER(len=lc) :: axis_ref
	490
	491	CALL xios_get_handle("wrestart", file_hdl)
[9367]	492	!define fields for restart context
[12950]	493	CALL xios_add_child(file_hdl, field_hdl, TRIM(sdfield))
	494
	495	IF(PRESENT(rd3)) THEN
[12961]	496	IF(lwp) write(numout, *) TRIM(sdfield), ' 3D ', size(rd3,3)
	497	IF(lwp) CALL FLUSH(numout)
[12950]	498	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	499	domain_ref="grid_N", axis_ref=TRIM(iom_axis(size(rd3, 3))), &
	500	prec = 8, operation = "instant")
	501	ENDIF
	502
	503	IF(PRESENT(rd2)) THEN
[12961]	504	IF(lwp) write(numout, *) TRIM(sdfield), ' 2D'
	505	IF(lwp) CALL FLUSH(numout)
[12950]	506	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	507	domain_ref="grid_N", prec = 8, operation = "instant")
	508	ENDIF
	509
	510	IF(PRESENT(rd1)) THEN
[12961]	511	IF(lwp) write(numout, *) TRIM(sdfield), ' 1D ', size(rd1,1)
	512	IF(lwp) CALL FLUSH(numout)
[12950]	513	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	514	axis_ref=TRIM(iom_axis(size(rd1, 1))), prec = 8, operation = "instant")
	515	ENDIF
	516
	517	IF(PRESENT(rd0)) THEN
[12961]	518	IF(lwp) write(numout, *) TRIM(sdfield), ' 0D'
	519	IF(lwp) CALL FLUSH(numout)
[12950]	520	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(sdfield), &
	521	scalar_ref = "grid_scalar", prec = 8, operation = "instant")
	522	ENDIF
[9367]	523	#endif
	524	END SUBROUTINE iom_set_rstw_active
	525
[12950]	526	FUNCTION iom_axis(idlev) result(axis_ref)
	527	!!---------------------------------------------------------------------
	528	!! * FUNCTION iom_axis *
	529	!!
	530	!! ** Purpose : Used for grid definition when XIOS is used to read/write
	531	!! restart. Returns axis corresponding to the number of levels
	532	!! given as an input variable. Axes are defined in routine
	533	!! iom_set_rst_context
	534	!!---------------------------------------------------------------------
	535	INTEGER, INTENT(IN) :: idlev
	536	CHARACTER(len=lc) :: axis_ref
	537	CHARACTER(len=12) :: str
	538	IF(idlev == jpk) THEN
	539	axis_ref="nav_lev"
	540	#if defined key_si3
	541	ELSEIF(idlev == jpl) THEN
	542	axis_ref="numcat"
	543	#endif
	544	ELSE
	545	write(str, *) idlev
	546	CALL ctl_stop( 'iom_axis', 'Definition for axis with '//TRIM(ADJUSTL(str))//' levels missing')
	547	ENDIF
	548	END FUNCTION iom_axis
	549
[9984]	550	SUBROUTINE iom_set_rst_context(ld_rstr)
[9367]	551	!!---------------------------------------------------------------------
[9535]	552	!! * SUBROUTINE iom_set_rst_context *
[9367]	553	!!
	554	!! ** Purpose : Define domain, axis and grid for restart (read/write)
	555	!! context
	556	!!
	557	!!---------------------------------------------------------------------
[9984]	558	LOGICAL, INTENT(IN) :: ld_rstr
[12950]	559	INTEGER :: ji
[9367]	560	#if defined key_iomput
	561	TYPE(xios_domaingroup) :: domaingroup_hdl
	562	TYPE(xios_domain) :: domain_hdl
	563	TYPE(xios_axisgroup) :: axisgroup_hdl
	564	TYPE(xios_axis) :: axis_hdl
	565	TYPE(xios_scalar) :: scalar_hdl
	566	TYPE(xios_scalargroup) :: scalargroup_hdl
	567
	568	CALL xios_get_handle("domain_definition",domaingroup_hdl)
	569	CALL xios_add_child(domaingroup_hdl, domain_hdl, "grid_N")
[9984]	570	CALL set_grid("N", glamt, gphit, .TRUE., ld_rstr)
[9367]	571
	572	CALL xios_get_handle("axis_definition",axisgroup_hdl)
	573	CALL xios_add_child(axisgroup_hdl, axis_hdl, "nav_lev")
	574	!AGRIF fails to compile when unit= is in call to xios_set_axis_attr
	575	! CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels", unit="m", positive="down")
	576	CALL xios_set_axis_attr( "nav_lev", long_name="Vertical levels in meters", positive="down")
	577	CALL iom_set_axis_attr( "nav_lev", paxis = gdept_1d )
[12950]	578	#if defined key_si3
	579	CALL xios_add_child(axisgroup_hdl, axis_hdl, "numcat")
	580	CALL iom_set_axis_attr( "numcat", (/ (REAL(ji,wp), ji=1,jpl) /) )
	581	#endif
[9367]	582
	583	CALL xios_get_handle("scalar_definition", scalargroup_hdl)
	584	CALL xios_add_child(scalargroup_hdl, scalar_hdl, "grid_scalar")
	585	#endif
	586	END SUBROUTINE iom_set_rst_context
	587
[4152]	588	SUBROUTINE iom_swap( cdname )
[1793]	589	!!---------------------------------------------------------------------
	590	!! * SUBROUTINE iom_swap *
	591	!!
	592	!! ** Purpose : swap context between different agrif grid for xmlio_server
	593	!!---------------------------------------------------------------------
[4152]	594	CHARACTER(len=*), INTENT(in) :: cdname
[1793]	595	#if defined key_iomput
[3695]	596	TYPE(xios_context) :: nemo_hdl
[4152]	597	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	598	CALL xios_get_handle(TRIM(cdname),nemo_hdl)
	599	ELSE
	600	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_"//TRIM(cdname),nemo_hdl)
	601	ENDIF
	602	!
	603	CALL xios_set_current_context(nemo_hdl)
[1793]	604	#endif
[4152]	605	!
[1793]	606	END SUBROUTINE iom_swap
	607
	608
[12649]	609	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, ldstop, ldiof, kdlev, cdcomp )
[544]	610	!!---------------------------------------------------------------------
	611	!! * SUBROUTINE iom_open *
	612	!!
	613	!! ** Purpose : open an input file (return 0 if not found)
	614	!!---------------------------------------------------------------------
	615	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	616	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	617	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	618	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[679]	619	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	620	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[9019]	621	INTEGER , INTENT(in ), OPTIONAL :: kdlev ! number of vertical levels
[12649]	622	CHARACTER(len=3), INTENT(in ), OPTIONAL :: cdcomp ! name of component calling iom_nf90_open
[9019]	623	!
[4148]	624	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	625	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[6140]	626	CHARACTER(LEN=10) :: clsuffix ! ".nc"
[550]	627	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[4148]	628	CHARACTER(LEN=256) :: clinfo ! info character
[544]	629	LOGICAL :: llok ! check the existence
[679]	630	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	631	LOGICAL :: llnoov ! local definition to read overlap
[679]	632	LOGICAL :: llstop ! local definition of ldstop
[1319]	633	LOGICAL :: lliof ! local definition of ldiof
[544]	634	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	635	INTEGER :: iln, ils ! lengths of character
	636	INTEGER :: idom ! type of domain
	637	INTEGER :: istop !
	638	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	639	! local number of points for x,y dimensions
	640	! position of first local point for x,y dimensions
	641	! position of last local point for x,y dimensions
	642	! start halo size for x,y dimensions
	643	! end halo size for x,y dimensions
	644	!---------------------------------------------------------------------
	645	! Initializations and control
	646	! =============
[1341]	647	kiomid = -1
[544]	648	clinfo = ' iom_open ~~~ '
	649	istop = nstop
	650	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	651	! (could be done when defining iom_file in f95 but not in f90)
[1441]	652	IF( Agrif_Root() ) THEN
	653	IF( iom_open_init == 0 ) THEN
	654	iom_file(:)%nfid = 0
	655	iom_open_init = 1
	656	ENDIF
[1409]	657	ENDIF
[544]	658	! do we read or write the file?
	659	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	660	ELSE ; llwrt = .FALSE.
	661	ENDIF
[679]	662	! do we call ctl_stop if we try to open a non-existing file in read mode?
	663	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	664	ELSE ; llstop = .TRUE.
	665	ENDIF
[1319]	666	! are we using interpolation on the fly?
	667	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	668	ELSE ; lliof = .FALSE.
	669	ENDIF
[1200]	670	! do we read the overlap
	671	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[10016]	672	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	673	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	674	! =============
	675	clname = trim(cdname)
[1319]	676	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[12377]	677	iln = INDEX(clname,'/')
[1200]	678	cltmpn = clname(1:iln)
	679	clname = clname(iln+1:LEN_TRIM(clname))
	680	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	681	ENDIF
[544]	682	! which suffix should we use?
[10425]	683	clsuffix = '.nc'
[544]	684	! Add the suffix if needed
	685	iln = LEN_TRIM(clname)
	686	ils = LEN_TRIM(clsuffix)
[742]	687	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	688	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	689	cltmpn = clname ! store this name
	690	! try to find if the file to be opened already exist
	691	! =============
	692	INQUIRE( FILE = clname, EXIST = llok )
	693	IF( .NOT.llok ) THEN
	694	! we try to add the cpu number to the name
[6140]	695	WRITE(clcpu,*) narea-1
	696
[544]	697	clcpu = TRIM(ADJUSTL(clcpu))
[679]	698	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	699	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	700	icnt = 0
	701	INQUIRE( FILE = clname, EXIST = llok )
	702	! we try different formats for the cpu number by adding 0
	703	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	704	clcpu = "0"//trim(clcpu)
	705	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	706	INQUIRE( FILE = clname, EXIST = llok )
	707	icnt = icnt + 1
	708	END DO
[9367]	709	ELSE
	710	lxios_sini = .TRUE.
[544]	711	ENDIF
[679]	712	IF( llwrt ) THEN
	713	! check the domain definition
	714	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	715	! idom = jpdom_local_noovlap ! default definition
[1200]	716	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	717	ELSE ; idom = jpdom_local_full ! default definition
[679]	718	ENDIF
	719	IF( PRESENT(kdom) ) idom = kdom
	720	! create the domain informations
	721	! =============
	722	SELECT CASE (idom)
	723	CASE (jpdom_local_full)
	724	idompar(:,1) = (/ jpi , jpj /)
	725	idompar(:,2) = (/ nimpp , njmpp /)
	726	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	727	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	728	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	729	CASE (jpdom_local_noextra)
	730	idompar(:,1) = (/ nlci , nlcj /)
	731	idompar(:,2) = (/ nimpp , njmpp /)
	732	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	733	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	734	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	735	CASE (jpdom_local_noovlap)
	736	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	737	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	738	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	739	idompar(:,4) = (/ 0 , 0 /)
	740	idompar(:,5) = (/ 0 , 0 /)
	741	CASE DEFAULT
	742	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	743	END SELECT
	744	ENDIF
[6140]	745	! Open the NetCDF file
[544]	746	! =============
	747	! do we have some free file identifier?
	748	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	749	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	750	! if no file was found...
	751	IF( .NOT. llok ) THEN
	752	IF( .NOT. llwrt ) THEN ! we are in read mode
	753	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	754	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	755	ENDIF
	756	ELSE ! we are in write mode so we
	757	clname = cltmpn ! get back the file name without the cpu number
	758	ENDIF
[2586]	759	ELSE
	760	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	761	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	762	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
[4650]	763	ELSEIF( llwrt ) THEN ! the file exists and we are in write mode with permission to
	764	clname = cltmpn ! overwrite so get back the file name without the cpu number
[2586]	765	ENDIF
[679]	766	ENDIF
[544]	767	IF( istop == nstop ) THEN ! no error within this routine
[12649]	768	CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar, kdlev = kdlev, cdcomp = cdcomp )
[544]	769	ENDIF
	770	!
	771	END SUBROUTINE iom_open
	772
	773
	774	SUBROUTINE iom_close( kiomid )
	775	!!--------------------------------------------------------------------
	776	!! * SUBROUTINE iom_close *
	777	!!
	778	!! ** Purpose : close an input file, or all files opened by iom
	779	!!--------------------------------------------------------------------
[1131]	780	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	781	! ! return 0 when file is properly closed
	782	! ! No argument: all files opened by iom are closed
[544]	783
	784	INTEGER :: jf ! dummy loop indices
	785	INTEGER :: i_s, i_e ! temporary integer
	786	CHARACTER(LEN=100) :: clinfo ! info character
	787	!---------------------------------------------------------------------
	788	!
[12283]	789	IF( iom_open_init == 0 ) RETURN ! avoid to use iom_file(jf)%nfid that us not yet initialized
	790	!
[544]	791	clinfo = ' iom_close ~~~ '
	792	IF( PRESENT(kiomid) ) THEN
	793	i_s = kiomid
	794	i_e = kiomid
	795	ELSE
	796	i_s = 1
	797	i_e = jpmax_files
	798	ENDIF
	799
	800	IF( i_s > 0 ) THEN
	801	DO jf = i_s, i_e
	802	IF( iom_file(jf)%nfid > 0 ) THEN
[10425]	803	CALL iom_nf90_close( jf )
[1131]	804	iom_file(jf)%nfid = 0 ! free the id
	805	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	806	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	807	ELSEIF( PRESENT(kiomid) ) THEN
	808	WRITE(ctmp1,*) '--->', kiomid
	809	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	810	ENDIF
	811	END DO
	812	ENDIF
	813	!
	814	END SUBROUTINE iom_close
	815
	816
[11536]	817	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, kndims, lduld, ldstop )
[544]	818	!!-----------------------------------------------------------------------
	819	!! * FUNCTION iom_varid *
	820	!!
	821	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	822	!!-----------------------------------------------------------------------
	823	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	824	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
[9540]	825	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of each dimension
[11536]	826	INTEGER , INTENT( out), OPTIONAL :: kndims ! number of dimensions
	827	LOGICAL , INTENT( out), OPTIONAL :: lduld ! true if the last dimension is unlimited (time)
[745]	828	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	829	!
	830	INTEGER :: iom_varid, iiv, i_nvd
	831	LOGICAL :: ll_fnd
	832	CHARACTER(LEN=100) :: clinfo ! info character
[745]	833	LOGICAL :: llstop ! local definition of ldstop
[544]	834	!!-----------------------------------------------------------------------
	835	iom_varid = 0 ! default definition
[745]	836	! do we call ctl_stop if we look for non-existing variable?
	837	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	838	ELSE ; llstop = .TRUE.
	839	ENDIF
[544]	840	!
	841	IF( kiomid > 0 ) THEN
[679]	842	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	843	IF( iom_file(kiomid)%nfid == 0 ) THEN
	844	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	845	ELSE
	846	ll_fnd = .FALSE.
	847	iiv = 0
	848	!
	849	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	850	iiv = iiv + 1
	851	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	852	END DO
	853	!
	854	IF( .NOT.ll_fnd ) THEN
	855	iiv = iiv + 1
	856	IF( iiv <= jpmax_vars ) THEN
[11536]	857	iom_varid = iom_nf90_varid( kiomid, cdvar, iiv, kdimsz, kndims, lduld )
[544]	858	ELSE
	859	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
[10425]	860	& 'increase the parameter jpmax_vars')
[544]	861	ENDIF
[745]	862	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	863	ELSE
	864	iom_varid = iiv
	865	IF( PRESENT(kdimsz) ) THEN
	866	i_nvd = iom_file(kiomid)%ndims(iiv)
[9540]	867	IF( i_nvd <= size(kdimsz) ) THEN
	868	kdimsz(1:i_nvd) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
[544]	869	ELSE
	870	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	871	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	872	ENDIF
	873	ENDIF
[4205]	874	IF( PRESENT(kndims) ) kndims = iom_file(kiomid)%ndims(iiv)
[11536]	875	IF( PRESENT( lduld) ) lduld = iom_file(kiomid)%luld( iiv)
[544]	876	ENDIF
	877	ENDIF
	878	ENDIF
	879	!
	880	END FUNCTION iom_varid
	881
	882
	883	!!----------------------------------------------------------------------
	884	!! INTERFACE iom_get
	885	!!----------------------------------------------------------------------
[9367]	886	SUBROUTINE iom_g0d( kiomid, cdvar, pvar, ktime, ldxios )
[544]	887	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	888	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	889	REAL(wp) , INTENT( out) :: pvar ! read field
[4245]	890	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
[9367]	891	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use xios to read restart
[544]	892	!
[4245]	893	INTEGER :: idvar ! variable id
	894	INTEGER :: idmspc ! number of spatial dimensions
	895	INTEGER , DIMENSION(1) :: itime ! record number
	896	CHARACTER(LEN=100) :: clinfo ! info character
	897	CHARACTER(LEN=100) :: clname ! file name
	898	CHARACTER(LEN=1) :: cldmspc !
[9367]	899	LOGICAL :: llxios
[544]	900	!
[9367]	901	llxios = .FALSE.
	902	IF( PRESENT(ldxios) ) llxios = ldxios
	903
	904	IF(.NOT.llxios) THEN ! read data using default library
	905	itime = 1
	906	IF( PRESENT(ktime) ) itime = ktime
	907	!
	908	clname = iom_file(kiomid)%name
	909	clinfo = ' iom_g0d, file: '//trim(clname)//', var: '//trim(cdvar)
	910	!
	911	IF( kiomid > 0 ) THEN
	912	idvar = iom_varid( kiomid, cdvar )
	913	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	914	idmspc = iom_file ( kiomid )%ndims( idvar )
	915	IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
	916	WRITE(cldmspc , fmt='(i1)') idmspc
	917	IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
	918	& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
	919	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[10425]	920	CALL iom_nf90_get( kiomid, idvar, pvar, itime )
[9367]	921	ENDIF
[679]	922	ENDIF
[9367]	923	ELSE
[9535]	924	#if defined key_iomput
[9367]	925	IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', trim(cdvar)
	926	CALL xios_recv_field( trim(cdvar), pvar)
[9535]	927	#else
[10425]	928	WRITE(ctmp1,*) 'Can not use XIOS in iom_g0d, file: '//trim(clname)//', var:'//trim(cdvar)
	929	CALL ctl_stop( 'iom_g0d', ctmp1 )
[9535]	930	#endif
[679]	931	ENDIF
[550]	932	END SUBROUTINE iom_g0d
[544]	933
[9367]	934	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, ldxios )
[544]	935	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	936	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	937	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	938	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	939	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	940	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	941	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
[9367]	942	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	943	!
[679]	944	IF( kiomid > 0 ) THEN
	945	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
[9367]	946	& ktime=ktime, kstart=kstart, kcount=kcount, &
	947	& ldxios=ldxios )
[679]	948	ENDIF
[550]	949	END SUBROUTINE iom_g1d
[544]	950
[9367]	951	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios)
[544]	952	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	953	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	954	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	955	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	956	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	957	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	958	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
[5118]	959	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	960	! look for and use a file attribute
	961	! called open_ocean_jstart to set the start
	962	! value for the 2nd dimension (netcdf only)
[9367]	963	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	964	!
[679]	965	IF( kiomid > 0 ) THEN
	966	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
[5118]	967	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	968	& lrowattr=lrowattr, ldxios=ldxios)
[679]	969	ENDIF
[550]	970	END SUBROUTINE iom_g2d
[544]	971
[9367]	972	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios )
[544]	973	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	974	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	975	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	976	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	977	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	978	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	979	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
[5118]	980	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	981	! look for and use a file attribute
	982	! called open_ocean_jstart to set the start
	983	! value for the 2nd dimension (netcdf only)
[9367]	984	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	985	!
[679]	986	IF( kiomid > 0 ) THEN
	987	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
[5118]	988	& ktime=ktime, kstart=kstart, kcount=kcount, &
[9367]	989	& lrowattr=lrowattr, ldxios=ldxios )
[679]	990	ENDIF
[550]	991	END SUBROUTINE iom_g3d
[544]	992	!!----------------------------------------------------------------------
	993
	994	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	995	& pv_r1d, pv_r2d, pv_r3d, &
[5118]	996	& ktime , kstart, kcount, &
[9367]	997	& lrowattr, ldxios )
[544]	998	!!-----------------------------------------------------------------------
	999	!! * ROUTINE iom_get_123d *
	1000	!!
	1001	!! ** Purpose : read a 1D/2D/3D variable
	1002	!!
	1003	!! ** Method : read ONE record at each CALL
	1004	!!-----------------------------------------------------------------------
	1005	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1006	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	1007	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	1008	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	1009	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	1010	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	1011	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	1012	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	1013	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
[5118]	1014	LOGICAL , INTENT(in ), OPTIONAL :: lrowattr ! logical flag telling iom_get to
[9367]	1015	! look for and use a file attribute
	1016	! called open_ocean_jstart to set the start
	1017	! value for the 2nd dimension (netcdf only)
	1018	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use XIOS to read restart
[544]	1019	!
[9367]	1020	LOGICAL :: llxios ! local definition for XIOS read
[1200]	1021	LOGICAL :: llnoov ! local definition to read overlap
[5118]	1022	LOGICAL :: luse_jattr ! local definition to read open_ocean_jstart file attribute
	1023	INTEGER :: jstartrow ! start point for 2nd dimension optionally set by file attribute
[544]	1024	INTEGER :: jl ! loop on number of dimension
	1025	INTEGER :: idom ! type of domain
	1026	INTEGER :: idvar ! id of the variable
	1027	INTEGER :: inbdim ! number of dimensions of the variable
	1028	INTEGER :: idmspc ! number of spatial dimensions
	1029	INTEGER :: itime ! record number
	1030	INTEGER :: istop ! temporary value of nstop
[679]	1031	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	1032	INTEGER :: ji, jj ! loop counters
[5118]	1033	INTEGER :: irankpv !
[679]	1034	INTEGER :: ind1, ind2 ! substring index
[544]	1035	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	1036	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	1037	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	1038	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	1039	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	1040	INTEGER :: itmp ! temporary integer
[4148]	1041	CHARACTER(LEN=256) :: clinfo ! info character
	1042	CHARACTER(LEN=256) :: clname ! file name
[679]	1043	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[6140]	1044	LOGICAL :: ll_depth_spec ! T => if kstart, kcount present then only use values for 3rd spatial dimension.
[9019]	1045	INTEGER :: inlev ! number of levels for 3D data
[9367]	1046	REAL(wp) :: gma, gmi
[544]	1047	!---------------------------------------------------------------------
	1048	!
[9019]	1049	inlev = -1
	1050	IF( PRESENT(pv_r3d) ) inlev = SIZE(pv_r3d, 3)
[9367]	1051	!
	1052	llxios = .FALSE.
	1053	if(PRESENT(ldxios)) llxios = ldxios
	1054	idvar = iom_varid( kiomid, cdvar )
[544]	1055	idom = kdom
[9367]	1056	!
	1057	IF(.NOT.llxios) THEN
	1058	clname = iom_file(kiomid)%name ! esier to read
	1059	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
	1060	! local definition of the domain ?
	1061	! do we read the overlap
	1062	! ugly patch SM+JMM+RB to overwrite global definition in some cases
	1063	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
	1064	! check kcount and kstart optionals parameters...
	1065	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	1066	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	1067	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown .AND. idom /= jpdom_autoglo_xy ) &
	1068	& CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown or kdom = jpdom_autoglo_xy')
[544]	1069
[9367]	1070	luse_jattr = .false.
	1071	IF( PRESENT(lrowattr) ) THEN
	1072	IF( lrowattr .AND. idom /= jpdom_data ) CALL ctl_stop(trim(clinfo), 'lrowattr present and true needs kdom = jpdom_data')
	1073	IF( lrowattr .AND. idom == jpdom_data ) luse_jattr = .true.
[6140]	1074	ENDIF
[679]	1075
[9367]	1076	! Search for the variable in the data base (eventually actualize data)
	1077	istop = nstop
[544]	1078	!
[9367]	1079	IF( idvar > 0 ) THEN
	1080	! to write iom_file(kiomid)%dimsz in a shorter way !
	1081	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	1082	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	1083	idmspc = inbdim ! number of spatial dimensions in the file
	1084	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
	1085	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	1086	!
	1087	! update idom definition...
	1088	! Identify the domain in case of jpdom_auto(glo/dta) definition
	1089	IF( idom == jpdom_autoglo_xy ) THEN
	1090	ll_depth_spec = .TRUE.
	1091	idom = jpdom_autoglo
	1092	ELSE
	1093	ll_depth_spec = .FALSE.
	1094	ENDIF
	1095	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	1096	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	1097	ELSE ; idom = jpdom_data
[544]	1098	ENDIF
[9367]	1099	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	1100	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	1101	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
	1102	ENDIF
	1103	! Identify the domain in case of jpdom_local definition
	1104	IF( idom == jpdom_local ) THEN
	1105	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	1106	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	1107	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	1108	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	1109	ENDIF
	1110	ENDIF
	1111	!
	1112	! check the consistency between input array and data rank in the file
	1113	!
	1114	! initializations
	1115	itime = 1
	1116	IF( PRESENT(ktime) ) itime = ktime
	1117	!
	1118	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	1119	WRITE(clrankpv, fmt='(i1)') irankpv
	1120	WRITE(cldmspc , fmt='(i1)') idmspc
	1121	!
[12377]	1122	!!GS: we consider 2D data as 3D data with vertical dim size = 1
	1123	!IF( idmspc < irankpv ) THEN
	1124	! CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
	1125	! & 'it is impossible to read a '//clrankpv//'D array from this file...' )
	1126	!ELSEIF( idmspc == irankpv ) THEN
	1127	IF( idmspc == irankpv ) THEN
[9367]	1128	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
	1129	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
	1130	ELSEIF( idmspc > irankpv ) THEN
	1131	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	1132	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
	1133	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	1134	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
	1135	idmspc = idmspc - 1
	1136	ELSE
	1137	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
	1138	& 'we do not accept data with '//cldmspc//' spatial dimensions', &
	1139	& 'Use ncwa -a to suppress the unnecessary dimensions' )
	1140	ENDIF
	1141	ENDIF
	1142	!
	1143	! definition of istart and icnt
	1144	!
	1145	icnt (:) = 1
	1146	istart(:) = 1
	1147	istart(idmspc+1) = itime
	1148
	1149	IF( PRESENT(kstart) .AND. .NOT. ll_depth_spec ) THEN
	1150	istart(1:idmspc) = kstart(1:idmspc)
	1151	icnt (1:idmspc) = kcount(1:idmspc)
	1152	ELSE
	1153	IF(idom == jpdom_unknown ) THEN
	1154	icnt(1:idmspc) = idimsz(1:idmspc)
	1155	ELSE
	1156	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
	1157	IF( idom == jpdom_data ) THEN
	1158	jstartrow = 1
	1159	IF( luse_jattr ) THEN
	1160	CALL iom_getatt(kiomid, 'open_ocean_jstart', jstartrow ) ! -999 is returned if the attribute is not found
	1161	jstartrow = MAX(1,jstartrow)
	1162	ENDIF
	1163	istart(1:2) = (/ mig(1), mjg(1) + jstartrow - 1 /) ! icnt(1:2) done below
	1164	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done below
[5118]	1165	ENDIF
[9367]	1166	! we do not read the overlap -> we start to read at nldi, nldj
[679]	1167	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1168	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[9367]	1169	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	1170	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	1171	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1172	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[9367]	1173	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	1174	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	1175	ENDIF
[9367]	1176	IF( PRESENT(pv_r3d) ) THEN
	1177	IF( idom == jpdom_data ) THEN ; icnt(3) = inlev
	1178	ELSEIF( ll_depth_spec .AND. PRESENT(kstart) ) THEN ; istart(3) = kstart(3) ; icnt(3) = kcount(3)
	1179	ELSE ; icnt(3) = inlev
	1180	ENDIF
	1181	ENDIF
[544]	1182	ENDIF
	1183	ENDIF
[679]	1184	ENDIF
[544]	1185
[9367]	1186	! check that istart and icnt can be used with this file
	1187	!-
	1188	DO jl = 1, jpmax_dims
	1189	itmp = istart(jl)+icnt(jl)-1
	1190	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	1191	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	1192	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
	1193	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	1194	ENDIF
	1195	END DO
[544]	1196
[9367]	1197	! check that icnt matches the input array
	1198	!-
	1199	IF( idom == jpdom_unknown ) THEN
	1200	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	1201	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	1202	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	1203	ctmp1 = 'd'
	1204	ELSE
	1205	IF( irankpv == 2 ) THEN
[679]	1206	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1207	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[9367]	1208	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	1209	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
	1210	ENDIF
[544]	1211	ENDIF
[9367]	1212	IF( irankpv == 3 ) THEN
[679]	1213	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1214	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[9367]	1215	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	1216	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
	1217	ENDIF
[544]	1218	ENDIF
[679]	1219	ENDIF
	1220
[9367]	1221	DO jl = 1, irankpv
	1222	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	1223	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	1224	END DO
[679]	1225
[9367]	1226	ENDIF
[544]	1227
[9367]	1228	! read the data
	1229	!-
	1230	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
	1231	!
[679]	1232	! find the right index of the array to be read
	1233	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1234	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1235	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1236	! ENDIF
[9367]	1237	IF( llnoov ) THEN
	1238	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1239	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1240	ENDIF
	1241	ELSE
	1242	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	1243	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1244	ENDIF
[679]	1245	ENDIF
	1246
[10425]	1247	CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, pv_r1d, pv_r2d, pv_r3d )
[679]	1248
[9367]	1249	IF( istop == nstop ) THEN ! no additional errors until this point...
	1250	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i6,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
	1251
	1252	!--- overlap areas and extra hallows (mpp)
	1253	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
[11536]	1254	CALL lbc_lnk( 'iom', pv_r2d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1255	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	1256	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	1257	IF( icnt(3) == inlev ) THEN
[11536]	1258	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing )
[9367]	1259	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	1260	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	1261	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	1262	ENDIF
[679]	1263	ENDIF
[9367]	1264	!
	1265	ELSE
	1266	! return if istop == nstop is false
	1267	RETURN
[679]	1268	ENDIF
[9367]	1269	ELSE
	1270	! return if statment idvar > 0 .AND. istop == nstop is false
	1271	RETURN
	1272	ENDIF
	1273	!
	1274	ELSE ! read using XIOS. Only if KEY_IOMPUT is defined
	1275	#if defined key_iomput
	1276	!would be good to be able to check which context is active and swap only if current is not restart
	1277	IF( PRESENT(pv_r3d) ) THEN
[9535]	1278	pv_r3d(:, :, :) = 0.
[9367]	1279	if(lwp) write(numout,*) 'XIOS RST READ (3D): ',trim(cdvar)
	1280	CALL xios_recv_field( trim(cdvar), pv_r3d)
	1281	IF(idom /= jpdom_unknown ) then
[11536]	1282	CALL lbc_lnk( 'iom', pv_r3d,'Z', -999., kfillmode = jpfillnothing)
[679]	1283	ENDIF
[9367]	1284	ELSEIF( PRESENT(pv_r2d) ) THEN
[9535]	1285	pv_r2d(:, :) = 0.
[9367]	1286	if(lwp) write(numout,*) 'XIOS RST READ (2D): ', trim(cdvar)
	1287	CALL xios_recv_field( trim(cdvar), pv_r2d)
	1288	IF(idom /= jpdom_unknown ) THEN
[11536]	1289	CALL lbc_lnk('iom', pv_r2d,'Z',-999., kfillmode = jpfillnothing)
[9367]	1290	ENDIF
	1291	ELSEIF( PRESENT(pv_r1d) ) THEN
[9535]	1292	pv_r1d(:) = 0.
[9367]	1293	if(lwp) write(numout,*) 'XIOS RST READ (1D): ', trim(cdvar)
	1294	CALL xios_recv_field( trim(cdvar), pv_r1d)
[544]	1295	ENDIF
[9367]	1296	#else
	1297	istop = istop + 1
	1298	clinfo = 'Can not use XIOS in iom_get_123d, file: '//trim(clname)//', var:'//trim(cdvar)
	1299	#endif
[544]	1300	ENDIF
[9367]	1301	!some final adjustments
	1302	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
[10425]	1303	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( 'iom', pv_r2d,'Z',1. )
	1304	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( 'iom', pv_r3d,'Z',1. )
[9367]	1305
	1306	!--- Apply scale_factor and offset
	1307	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	1308	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	1309	IF( PRESENT(pv_r1d) ) THEN
	1310	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	1311	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	1312	ELSEIF( PRESENT(pv_r2d) ) THEN
	1313	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
	1314	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	1315	ELSEIF( PRESENT(pv_r3d) ) THEN
	1316	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
	1317	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	1318	ENDIF
[544]	1319	!
	1320	END SUBROUTINE iom_get_123d
	1321
[12276]	1322	SUBROUTINE iom_get_var( cdname, z2d)
	1323	CHARACTER(LEN=*), INTENT(in ) :: cdname
	1324	REAL(wp), DIMENSION(jpi,jpj) :: z2d
	1325	#if defined key_iomput
	1326	IF( xios_field_is_active( cdname, at_current_timestep_arg = .TRUE. ) ) THEN
	1327	z2d(:,:) = 0._wp
	1328	CALL xios_recv_field( cdname, z2d)
	1329	ENDIF
	1330	#else
	1331	IF( .FALSE. ) WRITE(numout,*) cdname, z2d ! useless test to avoid compilation warnings
	1332	#endif
	1333	END SUBROUTINE iom_get_var
[544]	1334
[12276]	1335
[10522]	1336	FUNCTION iom_getszuld ( kiomid )
	1337	!!-----------------------------------------------------------------------
	1338	!! * FUNCTION iom_getszuld *
[544]	1339	!!
[10522]	1340	!! ** Purpose : get the size of the unlimited dimension in a file
	1341	!! (return -1 if not found)
	1342	!!-----------------------------------------------------------------------
	1343	INTEGER, INTENT(in ) :: kiomid ! file Identifier
[544]	1344	!
[10522]	1345	INTEGER :: iom_getszuld
	1346	!!-----------------------------------------------------------------------
	1347	iom_getszuld = -1
[679]	1348	IF( kiomid > 0 ) THEN
[10523]	1349	IF( iom_file(kiomid)%iduld > 0 ) iom_getszuld = iom_file(kiomid)%lenuld
[544]	1350	ENDIF
[10522]	1351	END FUNCTION iom_getszuld
	1352
[544]	1353
	1354	!!----------------------------------------------------------------------
[10425]	1355	!! INTERFACE iom_chkatt
[2528]	1356	!!----------------------------------------------------------------------
[10425]	1357	SUBROUTINE iom_chkatt( kiomid, cdatt, llok, ksize, cdvar )
[2528]	1358	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1359	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
[10425]	1360	LOGICAL , INTENT( out) :: llok ! Error code
	1361	INTEGER , INTENT( out), OPTIONAL :: ksize ! Size of the attribute array
[7646]	1362	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[2528]	1363	!
	1364	IF( kiomid > 0 ) THEN
[10425]	1365	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_chkatt( kiomid, cdatt, llok, ksize=ksize, cdvar=cdvar )
[2528]	1366	ENDIF
[10425]	1367	!
	1368	END SUBROUTINE iom_chkatt
	1369
	1370	!!----------------------------------------------------------------------
	1371	!! INTERFACE iom_getatt
	1372	!!----------------------------------------------------------------------
	1373	SUBROUTINE iom_g0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1374	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1375	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1376	INTEGER , INTENT( out) :: katt0d ! read field
	1377	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1378	!
	1379	IF( kiomid > 0 ) THEN
	1380	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
	1381	ENDIF
[7646]	1382	END SUBROUTINE iom_g0d_iatt
[2528]	1383
[10425]	1384	SUBROUTINE iom_g1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1385	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1386	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1387	INTEGER, DIMENSION(:) , INTENT( out) :: katt1d ! read field
	1388	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1389	!
	1390	IF( kiomid > 0 ) THEN
[10425]	1391	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1392	ENDIF
[10425]	1393	END SUBROUTINE iom_g1d_iatt
	1394
	1395	SUBROUTINE iom_g0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1396	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1397	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1398	REAL(wp) , INTENT( out) :: patt0d ! read field
	1399	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1400	!
	1401	IF( kiomid > 0 ) THEN
	1402	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1403	ENDIF
[7646]	1404	END SUBROUTINE iom_g0d_ratt
[2528]	1405
[10425]	1406	SUBROUTINE iom_g1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1407	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1408	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1409	REAL(wp), DIMENSION(:), INTENT( out) :: patt1d ! read field
	1410	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1411	!
	1412	IF( kiomid > 0 ) THEN
[10425]	1413	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1414	ENDIF
[10425]	1415	END SUBROUTINE iom_g1d_ratt
	1416
	1417	SUBROUTINE iom_g0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1418	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1419	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1420	CHARACTER(len=*) , INTENT( out) :: cdatt0d ! read field
	1421	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1422	!
	1423	IF( kiomid > 0 ) THEN
	1424	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_getatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1425	ENDIF
[7646]	1426	END SUBROUTINE iom_g0d_catt
	1427
[10425]	1428
[2528]	1429	!!----------------------------------------------------------------------
[7646]	1430	!! INTERFACE iom_putatt
	1431	!!----------------------------------------------------------------------
[10425]	1432	SUBROUTINE iom_p0d_iatt( kiomid, cdatt, katt0d, cdvar )
	1433	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1434	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1435	INTEGER , INTENT(in ) :: katt0d ! written field
	1436	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1437	!
	1438	IF( kiomid > 0 ) THEN
[10425]	1439	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt0d = katt0d, cdvar=cdvar )
[7646]	1440	ENDIF
	1441	END SUBROUTINE iom_p0d_iatt
	1442
[10425]	1443	SUBROUTINE iom_p1d_iatt( kiomid, cdatt, katt1d, cdvar )
	1444	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1445	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1446	INTEGER, DIMENSION(:) , INTENT(in ) :: katt1d ! written field
	1447	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1448	!
	1449	IF( kiomid > 0 ) THEN
[10425]	1450	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, katt1d = katt1d, cdvar=cdvar )
[7646]	1451	ENDIF
[10425]	1452	END SUBROUTINE iom_p1d_iatt
	1453
	1454	SUBROUTINE iom_p0d_ratt( kiomid, cdatt, patt0d, cdvar )
	1455	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1456	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1457	REAL(wp) , INTENT(in ) :: patt0d ! written field
	1458	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1459	!
	1460	IF( kiomid > 0 ) THEN
	1461	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt0d = patt0d, cdvar=cdvar )
	1462	ENDIF
[7646]	1463	END SUBROUTINE iom_p0d_ratt
	1464
[10425]	1465	SUBROUTINE iom_p1d_ratt( kiomid, cdatt, patt1d, cdvar )
	1466	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1467	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1468	REAL(wp), DIMENSION(:), INTENT(in ) :: patt1d ! written field
	1469	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[7646]	1470	!
	1471	IF( kiomid > 0 ) THEN
[10425]	1472	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, patt1d = patt1d, cdvar=cdvar )
[7646]	1473	ENDIF
[10425]	1474	END SUBROUTINE iom_p1d_ratt
	1475
	1476	SUBROUTINE iom_p0d_catt( kiomid, cdatt, cdatt0d, cdvar )
	1477	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1478	CHARACTER(len=*) , INTENT(in ) :: cdatt ! Name of the attribute
	1479	CHARACTER(len=*) , INTENT(in ) :: cdatt0d ! written field
	1480	CHARACTER(len=*) , INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1481	!
	1482	IF( kiomid > 0 ) THEN
	1483	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_nf90_putatt( kiomid, cdatt, cdatt0d = cdatt0d, cdvar=cdvar )
	1484	ENDIF
[7646]	1485	END SUBROUTINE iom_p0d_catt
	1486
[10425]	1487
[7646]	1488	!!----------------------------------------------------------------------
[544]	1489	!! INTERFACE iom_rstput
	1490	!!----------------------------------------------------------------------
[9367]	1491	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1492	INTEGER , INTENT(in) :: kt ! ocean time-step
	1493	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1494	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1495	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	1496	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	1497	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1498	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1499	LOGICAL :: llx ! local xios write flag
[544]	1500	INTEGER :: ivid ! variable id
[9367]	1501
	1502	llx = .FALSE.
	1503	IF(PRESENT(ldxios)) llx = ldxios
	1504	IF( llx ) THEN
	1505	#ifdef key_iomput
	1506	IF( kt == kwrite ) THEN
	1507	IF(lwp) write(numout,*) 'RESTART: write (XIOS 0D) ',trim(cdvar)
	1508	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1509	ELSE
	1510	IF(lwp) write(numout,*) 'RESTART: define (XIOS 0D) ',trim(cdvar)
	1511	CALL iom_set_rstw_active( trim(cdvar), rd0 = pvar )
[9367]	1512	ENDIF
	1513	#endif
	1514	ELSE
	1515	IF( kiomid > 0 ) THEN
	1516	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1517	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1518	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
[9367]	1519	ENDIF
[679]	1520	ENDIF
	1521	ENDIF
[550]	1522	END SUBROUTINE iom_rp0d
[544]	1523
[9367]	1524	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1525	INTEGER , INTENT(in) :: kt ! ocean time-step
	1526	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1527	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1528	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1529	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	1530	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1531	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1532	LOGICAL :: llx ! local xios write flag
[544]	1533	INTEGER :: ivid ! variable id
[9367]	1534
	1535	llx = .FALSE.
	1536	IF(PRESENT(ldxios)) llx = ldxios
	1537	IF( llx ) THEN
	1538	#ifdef key_iomput
	1539	IF( kt == kwrite ) THEN
	1540	IF(lwp) write(numout,*) 'RESTART: write (XIOS 1D) ',trim(cdvar)
	1541	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1542	ELSE
	1543	IF(lwp) write(numout,*) 'RESTART: define (XIOS 1D) ',trim(cdvar)
	1544	CALL iom_set_rstw_active( trim(cdvar), rd1 = pvar )
[9367]	1545	ENDIF
	1546	#endif
	1547	ELSE
	1548	IF( kiomid > 0 ) THEN
	1549	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1550	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1551	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
[9367]	1552	ENDIF
[679]	1553	ENDIF
	1554	ENDIF
[550]	1555	END SUBROUTINE iom_rp1d
[544]	1556
[9367]	1557	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1558	INTEGER , INTENT(in) :: kt ! ocean time-step
	1559	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1560	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1561	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1562	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	1563	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1564	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1565	LOGICAL :: llx
[544]	1566	INTEGER :: ivid ! variable id
[9367]	1567
	1568	llx = .FALSE.
	1569	IF(PRESENT(ldxios)) llx = ldxios
	1570	IF( llx ) THEN
	1571	#ifdef key_iomput
	1572	IF( kt == kwrite ) THEN
	1573	IF(lwp) write(numout,*) 'RESTART: write (XIOS 2D) ',trim(cdvar)
	1574	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1575	ELSE
	1576	IF(lwp) write(numout,*) 'RESTART: define (XIOS 2D) ',trim(cdvar)
	1577	CALL iom_set_rstw_active( trim(cdvar), rd2 = pvar )
[9367]	1578	ENDIF
	1579	#endif
	1580	ELSE
	1581	IF( kiomid > 0 ) THEN
	1582	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1583	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1584	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
[9367]	1585	ENDIF
[679]	1586	ENDIF
	1587	ENDIF
[550]	1588	END SUBROUTINE iom_rp2d
[544]	1589
[9367]	1590	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype, ldxios )
[544]	1591	INTEGER , INTENT(in) :: kt ! ocean time-step
	1592	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1593	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1594	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1595	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	1596	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
[9367]	1597	LOGICAL, OPTIONAL :: ldxios ! xios write flag
	1598	LOGICAL :: llx ! local xios write flag
[544]	1599	INTEGER :: ivid ! variable id
[9367]	1600
	1601	llx = .FALSE.
	1602	IF(PRESENT(ldxios)) llx = ldxios
	1603	IF( llx ) THEN
	1604	#ifdef key_iomput
	1605	IF( kt == kwrite ) THEN
	1606	IF(lwp) write(numout,*) 'RESTART: write (XIOS 3D) ',trim(cdvar)
	1607	CALL xios_send_field(trim(cdvar), pvar)
[12950]	1608	ELSE
	1609	IF(lwp) write(numout,*) 'RESTART: define (XIOS 3D) ',trim(cdvar)
	1610	CALL iom_set_rstw_active( trim(cdvar), rd3 = pvar )
[9367]	1611	ENDIF
	1612	#endif
	1613	ELSE
	1614	IF( kiomid > 0 ) THEN
	1615	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1616	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[10425]	1617	CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
[9367]	1618	ENDIF
[679]	1619	ENDIF
	1620	ENDIF
[550]	1621	END SUBROUTINE iom_rp3d
[1359]	1622
	1623
[10425]	1624	SUBROUTINE iom_delay_rst( cdaction, cdcpnt, kncid )
	1625	!!---------------------------------------------------------------------
	1626	!! Routine iom_delay_rst: used read/write restart related to mpp_delay
	1627	!!
	1628	!!---------------------------------------------------------------------
	1629	CHARACTER(len=*), INTENT(in ) :: cdaction !
	1630	CHARACTER(len=*), INTENT(in ) :: cdcpnt
	1631	INTEGER , INTENT(in ) :: kncid
	1632	!
	1633	INTEGER :: ji
	1634	INTEGER :: indim
	1635	LOGICAL :: llattexist
	1636	REAL(wp), ALLOCATABLE, DIMENSION(:) :: zreal1d
	1637	!!---------------------------------------------------------------------
	1638	!
	1639	! ===================================
	1640	IF( TRIM(cdaction) == 'READ' ) THEN ! read restart related to mpp_delay !
	1641	! ===================================
	1642	DO ji = 1, nbdelay
	1643	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1644	CALL iom_chkatt( kncid, 'DELAY_'//c_delaylist(ji), llattexist, indim )
	1645	IF( llattexist ) THEN
	1646	ALLOCATE( todelay(ji)%z1d(indim) )
	1647	CALL iom_getatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1648	ndelayid(ji) = 0 ! set to 0 to specify that the value was read in the restart
	1649	ENDIF
	1650	ENDIF
	1651	END DO
	1652	! ====================================
	1653	ELSE ! write restart related to mpp_delay !
	1654	! ====================================
	1655	DO ji = 1, nbdelay ! save only ocean delayed global communication variables
	1656	IF ( c_delaycpnt(ji) == cdcpnt ) THEN
	1657	IF( ASSOCIATED(todelay(ji)%z1d) ) THEN
	1658	CALL mpp_delay_rcv(ji) ! make sure %z1d is received
	1659	CALL iom_putatt( kncid, 'DELAY_'//c_delaylist(ji), todelay(ji)%z1d(:) )
	1660	ENDIF
	1661	ENDIF
	1662	END DO
	1663	!
	1664	ENDIF
	1665
	1666	END SUBROUTINE iom_delay_rst
	1667
	1668
	1669
[544]	1670	!!----------------------------------------------------------------------
[1457]	1671	!! INTERFACE iom_put
[1359]	1672	!!----------------------------------------------------------------------
[1738]	1673	SUBROUTINE iom_p0d( cdname, pfield0d )
	1674	CHARACTER(LEN=*), INTENT(in) :: cdname
	1675	REAL(wp) , INTENT(in) :: pfield0d
[11536]	1676	!! REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
[1738]	1677	#if defined key_iomput
[11536]	1678	!!clem zz(:,:)=pfield0d
	1679	!!clem CALL xios_send_field(cdname, zz)
	1680	CALL xios_send_field(cdname, (/pfield0d/))
[1738]	1681	#else
	1682	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	1683	#endif
	1684	END SUBROUTINE iom_p0d
	1685
[3294]	1686	SUBROUTINE iom_p1d( cdname, pfield1d )
	1687	CHARACTER(LEN=*) , INTENT(in) :: cdname
	1688	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	1689	#if defined key_iomput
[3695]	1690	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	1691	#else
	1692	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	1693	#endif
	1694	END SUBROUTINE iom_p1d
	1695
[1359]	1696	SUBROUTINE iom_p2d( cdname, pfield2d )
	1697	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1698	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	1699	#if defined key_iomput
[3695]	1700	CALL xios_send_field(cdname, pfield2d)
[1520]	1701	#else
	1702	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1703	#endif
	1704	END SUBROUTINE iom_p2d
[544]	1705
[1359]	1706	SUBROUTINE iom_p3d( cdname, pfield3d )
	1707	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1708	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1709	#if defined key_iomput
[9019]	1710	CALL xios_send_field( cdname, pfield3d )
[1520]	1711	#else
	1712	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1713	#endif
	1714	END SUBROUTINE iom_p3d
[544]	1715
[12276]	1716	SUBROUTINE iom_p4d( cdname, pfield4d )
[12377]	1717	CHARACTER(LEN=*) , INTENT(in) :: cdname
[12276]	1718	REAL(wp), DIMENSION(:,:,:,:), INTENT(in) :: pfield4d
[1412]	1719	#if defined key_iomput
[12276]	1720	CALL xios_send_field(cdname, pfield4d)
	1721	#else
	1722	IF( .FALSE. ) WRITE(numout,*) cdname, pfield4d ! useless test to avoid compilation warnings
	1723	#endif
	1724	END SUBROUTINE iom_p4d
	1725
	1726
	1727	#if defined key_iomput
[9019]	1728	!!----------------------------------------------------------------------
[9802]	1729	!! 'key_iomput' XIOS interface
[9019]	1730	!!----------------------------------------------------------------------
[1359]	1731
[9930]	1732	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, &
[5363]	1733	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, &
[5415]	1734	& nvertex, bounds_lon, bounds_lat, area )
[9019]	1735	!!----------------------------------------------------------------------
	1736	!!----------------------------------------------------------------------
	1737	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1738	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1739	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
[9930]	1740	INTEGER , OPTIONAL, INTENT(in) :: nvertex
[9019]	1741	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
	1742	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area
	1743	LOGICAL , DIMENSION(:) , OPTIONAL, INTENT(in) :: mask
	1744	!!----------------------------------------------------------------------
	1745	!
	1746	IF( xios_is_valid_domain (cdid) ) THEN
[4148]	1747	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1748	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1749	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1750	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear')
[9367]	1751	ENDIF
[9019]	1752	IF( xios_is_valid_domaingroup(cdid) ) THEN
[4148]	1753	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1754	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1755	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1756	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear' )
[3695]	1757	ENDIF
[9019]	1758	!
[4148]	1759	CALL xios_solve_inheritance()
[9019]	1760	!
[3695]	1761	END SUBROUTINE iom_set_domain_attr
	1762
	1763
[9019]	1764	SUBROUTINE iom_set_zoom_domain_attr( cdid, ibegin, jbegin, ni, nj )
	1765	!!----------------------------------------------------------------------
	1766	!!----------------------------------------------------------------------
[9930]	1767	CHARACTER(LEN=*), INTENT(in) :: cdid
	1768	INTEGER , INTENT(in) :: ibegin, jbegin, ni, nj
	1769	!
	1770	TYPE(xios_gridgroup) :: gridgroup_hdl
	1771	TYPE(xios_grid) :: grid_hdl
	1772	TYPE(xios_domain) :: domain_hdl
	1773	TYPE(xios_axis) :: axis_hdl
	1774	CHARACTER(LEN=64) :: cldomrefid ! domain_ref name
	1775	CHARACTER(len=1) :: cl1 ! last character of this name
[9019]	1776	!!----------------------------------------------------------------------
[9930]	1777	!
	1778	IF( xios_is_valid_zoom_domain(cdid) ) THEN
	1779	! define the zoom_domain attributs
	1780	CALL xios_set_zoom_domain_attr( cdid, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj )
	1781	! define a new 2D grid with this new domain
	1782	CALL xios_get_handle("grid_definition", gridgroup_hdl )
	1783	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_2D' ) ! add a new 2D grid to grid_definition
	1784	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1785	! define a new 3D grid with this new domain
	1786	CALL xios_add_child(gridgroup_hdl, grid_hdl, TRIM(cdid)//'_3D' ) ! add a new 3D grid to grid_definition
	1787	CALL xios_add_child(grid_hdl, domain_hdl, TRIM(cdid) ) ! add its domain
	1788	! vertical axis
	1789	cl1 = cdid(LEN_TRIM(cdid):) ! last letter of cdid
	1790	cl1 = CHAR(ICHAR(cl1)+32) ! from upper to lower case
	1791	CALL xios_add_child(grid_hdl, axis_hdl, 'depth'//cl1) ! add its axis
	1792	ENDIF
	1793	!
[7646]	1794	END SUBROUTINE iom_set_zoom_domain_attr
	1795
	1796
[5415]	1797	SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds )
[9019]	1798	!!----------------------------------------------------------------------
	1799	!!----------------------------------------------------------------------
[4148]	1800	CHARACTER(LEN=*) , INTENT(in) :: cdid
[5415]	1801	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis
	1802	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds
[9019]	1803	!!----------------------------------------------------------------------
	1804	IF( PRESENT(paxis) ) THEN
	1805	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, n_glo=SIZE(paxis), value=paxis )
	1806	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, n_glo=SIZE(paxis), value=paxis )
[5415]	1807	ENDIF
[9019]	1808	IF( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=bounds )
	1809	IF( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=bounds )
[4148]	1810	CALL xios_solve_inheritance()
[3737]	1811	END SUBROUTINE iom_set_axis_attr
	1812
	1813
[4148]	1814	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
[9019]	1815	!!----------------------------------------------------------------------
	1816	!!----------------------------------------------------------------------
	1817	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1818	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_op
	1819	TYPE(xios_duration), OPTIONAL, INTENT(in) :: freq_offset
	1820	!!----------------------------------------------------------------------
	1821	IF( xios_is_valid_field (cdid) ) CALL xios_set_field_attr ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1822	IF( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr( cdid, freq_op=freq_op, freq_offset=freq_offset )
[4148]	1823	CALL xios_solve_inheritance()
[3695]	1824	END SUBROUTINE iom_set_field_attr
	1825
	1826
[4148]	1827	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
[9019]	1828	!!----------------------------------------------------------------------
	1829	!!----------------------------------------------------------------------
[4148]	1830	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1831	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[9019]	1832	!!----------------------------------------------------------------------
	1833	IF( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1834	IF( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
[4148]	1835	CALL xios_solve_inheritance()
[3771]	1836	END SUBROUTINE iom_set_file_attr
[3695]	1837
	1838
[4148]	1839	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
[9019]	1840	!!----------------------------------------------------------------------
	1841	!!----------------------------------------------------------------------
[4148]	1842	CHARACTER(LEN=*) , INTENT(in ) :: cdid
[7646]	1843	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix
	1844	TYPE(xios_duration), OPTIONAL , INTENT(out) :: output_freq
[4148]	1845	LOGICAL :: llexist1,llexist2,llexist3
	1846	!---------------------------------------------------------------------
	1847	IF( PRESENT( name ) ) name = '' ! default values
	1848	IF( PRESENT( name_suffix ) ) name_suffix = ''
[7646]	1849	IF( PRESENT( output_freq ) ) output_freq = xios_duration(0,0,0,0,0,0)
[9019]	1850	IF( xios_is_valid_file (cdid) ) THEN
[4148]	1851	CALL xios_solve_inheritance()
	1852	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1853	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1854	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1855	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1856	ENDIF
[9019]	1857	IF( xios_is_valid_filegroup(cdid) ) THEN
[4148]	1858	CALL xios_solve_inheritance()
	1859	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1860	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1861	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1862	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1863	ENDIF
	1864	END SUBROUTINE iom_get_file_attr
	1865
	1866
	1867	SUBROUTINE iom_set_grid_attr( cdid, mask )
[9019]	1868	!!----------------------------------------------------------------------
	1869	!!----------------------------------------------------------------------
[4148]	1870	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1871	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[9019]	1872	!!----------------------------------------------------------------------
	1873	IF( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask_3D=mask )
	1874	IF( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask_3D=mask )
[4148]	1875	CALL xios_solve_inheritance()
[3771]	1876	END SUBROUTINE iom_set_grid_attr
[3695]	1877
[4152]	1878	SUBROUTINE iom_setkt( kt, cdname )
[9019]	1879	!!----------------------------------------------------------------------
	1880	!!----------------------------------------------------------------------
[4152]	1881	INTEGER , INTENT(in) :: kt
	1882	CHARACTER(LEN=*), INTENT(in) :: cdname
[9019]	1883	!!----------------------------------------------------------------------
[4152]	1884	CALL iom_swap( cdname ) ! swap to cdname context
	1885	CALL xios_update_calendar(kt)
[9019]	1886	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4152]	1887	END SUBROUTINE iom_setkt
[3695]	1888
[4152]	1889	SUBROUTINE iom_context_finalize( cdname )
[9019]	1890	!!----------------------------------------------------------------------
	1891	!!----------------------------------------------------------------------
[4152]	1892	CHARACTER(LEN=*), INTENT(in) :: cdname
[9367]	1893	CHARACTER(LEN=120) :: clname
[9019]	1894	!!----------------------------------------------------------------------
[9367]	1895	clname = cdname
[12957]	1896	IF(lwp) write(numout, *) 'Finalize: ', TRIM(cdname)
[9367]	1897	IF( TRIM(Agrif_CFixed()) .NE. '0' ) clname = TRIM(Agrif_CFixed())//"_"//clname
	1898	IF( xios_is_valid_context(clname) ) THEN
[4990]	1899	CALL iom_swap( cdname ) ! swap to cdname context
	1900	CALL xios_context_finalize() ! finalize the context
[5407]	1901	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4990]	1902	ENDIF
[9367]	1903	!
[4152]	1904	END SUBROUTINE iom_context_finalize
	1905
	1906
[9984]	1907	SUBROUTINE set_grid( cdgrd, plon, plat, ldxios, ldrxios )
[1359]	1908	!!----------------------------------------------------------------------
[4148]	1909	!! * ROUTINE set_grid *
[1359]	1910	!!
[1725]	1911	!! ** Purpose : define horizontal grids
[1359]	1912	!!----------------------------------------------------------------------
[3771]	1913	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1914	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1915	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1916	!
[9019]	1917	INTEGER :: ni, nj
[3771]	1918	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[9984]	1919	LOGICAL, INTENT(IN) :: ldxios, ldrxios
[9019]	1920	!!----------------------------------------------------------------------
	1921	!
	1922	ni = nlei-nldi+1
	1923	nj = nlej-nldj+1
	1924	!
[7646]	1925	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[3771]	1926	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
[9984]	1927	!don't define lon and lat for restart reading context.
	1928	IF ( .NOT.ldrxios ) &
	1929	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
[3771]	1930	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[9019]	1931	!
[9367]	1932	IF ( ln_mskland .AND. (.NOT.ldxios) ) THEN
[3771]	1933	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1934	SELECT CASE ( cdgrd )
	1935	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
[10425]	1936	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( 'iom', zmask, 'U', 1. )
	1937	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpj,:) ; CALL lbc_lnk( 'iom', zmask, 'V', 1. )
[3771]	1938	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1939	END SELECT
	1940	!
[7646]	1941	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni*nj /)) /= 0. )
[4148]	1942	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1943	ENDIF
[9019]	1944	!
[1359]	1945	END SUBROUTINE set_grid
	1946
[1725]	1947
[5415]	1948	SUBROUTINE set_grid_bounds( cdgrd, plon_cnr, plat_cnr, plon_pnt, plat_pnt )
[5363]	1949	!!----------------------------------------------------------------------
	1950	!! * ROUTINE set_grid_bounds *
	1951	!!
	1952	!! ** Purpose : define horizontal grid corners
	1953	!!
	1954	!!----------------------------------------------------------------------
[9019]	1955	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
	1956	REAL(wp), DIMENSION(jpi,jpj) , INTENT(in) :: plon_cnr, plat_cnr ! Lat/lon coord. of a contiguous vertex of cell (i,j)
	1957	REAL(wp), DIMENSION(jpi,jpj), OPTIONAL, INTENT(in) :: plon_pnt, plat_pnt ! Lat/lon coord. of the point of cell (i,j)
[5363]	1958	!
[9019]	1959	INTEGER :: ji, jj, jn, ni, nj
[12377]	1960	INTEGER :: icnr, jcnr ! Offset such that the vertex coordinate (i+icnr,j+jcnr)
	1961	! ! represents the bottom-left corner of cell (i,j)
[9019]	1962	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: z_bnds ! Lat/lon coordinates of the vertices of cell (i,j)
	1963	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_fld ! Working array to determine where to rotate cells
	1964	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_rot ! Lat/lon working array for rotation of cells
	1965	!!----------------------------------------------------------------------
[5415]	1966	!
[9019]	1967	ALLOCATE( z_bnds(4,jpi,jpj,2), z_fld(jpi,jpj), z_rot(4,2) )
[5363]	1968	!
[5415]	1969	! Offset of coordinate representing bottom-left corner
[5363]	1970	SELECT CASE ( TRIM(cdgrd) )
[9019]	1971	CASE ('T', 'W') ; icnr = -1 ; jcnr = -1
	1972	CASE ('U') ; icnr = 0 ; jcnr = -1
	1973	CASE ('V') ; icnr = -1 ; jcnr = 0
[5363]	1974	END SELECT
[9019]	1975	!
	1976	ni = nlei-nldi+1 ! Dimensions of subdomain interior
	1977	nj = nlej-nldj+1
	1978	!
[5363]	1979	z_fld(:,:) = 1._wp
[10425]	1980	CALL lbc_lnk( 'iom', z_fld, cdgrd, -1. ) ! Working array for location of northfold
[9019]	1981	!
[5363]	1982	! Cell vertices that can be defined
	1983	DO jj = 2, jpjm1
	1984	DO ji = 2, jpim1
[5415]	1985	z_bnds(1,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	1986	z_bnds(2,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	1987	z_bnds(3,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	1988	z_bnds(4,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr+1) ! Top-left
	1989	z_bnds(1,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	1990	z_bnds(2,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	1991	z_bnds(3,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	1992	z_bnds(4,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr+1) ! Top-left
[5363]	1993	END DO
	1994	END DO
[9019]	1995	!
[5363]	1996	! Cell vertices on boundries
	1997	DO jn = 1, 4
[11536]	1998	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,1), cdgrd, 1., pfillval=999._wp )
	1999	CALL lbc_lnk( 'iom', z_bnds(jn,:,:,2), cdgrd, 1., pfillval=999._wp )
[5363]	2000	END DO
[9019]	2001	!
[5415]	2002	! Zero-size cells at closed boundaries if cell points provided,
	2003	! otherwise they are closed cells with unrealistic bounds
	2004	IF( PRESENT(plon_pnt) .AND. PRESENT(plat_pnt) ) THEN
	2005	IF( (nbondi == -1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2006	DO jn = 1, 4 ! (West or jpni = 1), closed E-W
	2007	z_bnds(jn,1,:,1) = plat_pnt(1,:) ; z_bnds(jn,1,:,2) = plon_pnt(1,:)
	2008	END DO
	2009	ENDIF
	2010	IF( (nbondi == 1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	2011	DO jn = 1, 4 ! (East or jpni = 1), closed E-W
	2012	z_bnds(jn,nlci,:,1) = plat_pnt(nlci,:) ; z_bnds(jn,nlci,:,2) = plon_pnt(nlci,:)
	2013	END DO
	2014	ENDIF
	2015	IF( nbondj == -1 .OR. (nbondj == 2 .AND. jperio /= 2) ) THEN
	2016	DO jn = 1, 4 ! South or (jpnj = 1, not symmetric)
	2017	z_bnds(jn,:,1,1) = plat_pnt(:,1) ; z_bnds(jn,:,1,2) = plon_pnt(:,1)
	2018	END DO
	2019	ENDIF
	2020	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio < 3 ) THEN
	2021	DO jn = 1, 4 ! (North or jpnj = 1), no north fold
	2022	z_bnds(jn,:,nlcj,1) = plat_pnt(:,nlcj) ; z_bnds(jn,:,nlcj,2) = plon_pnt(:,nlcj)
	2023	END DO
	2024	ENDIF
[5363]	2025	ENDIF
[9019]	2026	!
	2027	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio >= 3 ) THEN ! Rotate cells at the north fold
[5363]	2028	DO jj = 1, jpj
	2029	DO ji = 1, jpi
	2030	IF( z_fld(ji,jj) == -1. ) THEN
	2031	z_rot(1,:) = z_bnds(3,ji,jj,:) ; z_rot(2,:) = z_bnds(4,ji,jj,:)
	2032	z_rot(3,:) = z_bnds(1,ji,jj,:) ; z_rot(4,:) = z_bnds(2,ji,jj,:)
	2033	z_bnds(:,ji,jj,:) = z_rot(:,:)
	2034	ENDIF
	2035	END DO
	2036	END DO
[9019]	2037	ELSE IF( nbondj == 2 .AND. jperio == 2 ) THEN ! Invert cells at the symmetric equator
[5363]	2038	DO ji = 1, jpi
	2039	z_rot(1:2,:) = z_bnds(3:4,ji,1,:)
	2040	z_rot(3:4,:) = z_bnds(1:2,ji,1,:)
	2041	z_bnds(:,ji,1,:) = z_rot(:,:)
	2042	END DO
	2043	ENDIF
[9019]	2044	!
[5363]	2045	CALL iom_set_domain_attr("grid_"//cdgrd, bounds_lat = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,1),(/ 4,ni*nj /)), &
[9019]	2046	& bounds_lon = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,2),(/ 4,ni*nj /)), nvertex=4 )
	2047	!
[5415]	2048	DEALLOCATE( z_bnds, z_fld, z_rot )
[9019]	2049	!
[5363]	2050	END SUBROUTINE set_grid_bounds
	2051
	2052
[5385]	2053	SUBROUTINE set_grid_znl( plat )
	2054	!!----------------------------------------------------------------------
	2055	!! * ROUTINE set_grid_znl *
	2056	!!
	2057	!! ** Purpose : define grids for zonal mean
	2058	!!
	2059	!!----------------------------------------------------------------------
	2060	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
	2061	!
[9019]	2062	INTEGER :: ni, nj, ix, iy
[5385]	2063	REAL(wp), DIMENSION(:), ALLOCATABLE :: zlon
[9019]	2064	!!----------------------------------------------------------------------
	2065	!
	2066	ni=nlei-nldi+1 ! define zonal mean domain (jpj*jpk)
	2067	nj=nlej-nldj+1
	2068	ALLOCATE( zlon(ni*nj) ) ; zlon(:) = 0._wp
	2069	!
[12276]	2070	! CALL dom_ngb( -168.53, 65.03, ix, iy, 'T' ) ! i-line that passes through Bering Strait: Reference latitude (used in plots)
	2071	CALL dom_ngb( 180., 90., ix, iy, 'T' ) ! i-line that passes near the North Pole : Reference latitude (used in plots)
[7646]	2072	CALL iom_set_domain_attr("gznl", ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[5385]	2073	CALL iom_set_domain_attr("gznl", data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	2074	CALL iom_set_domain_attr("gznl", lonvalue = zlon, &
	2075	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[12276]	2076	CALL iom_set_zoom_domain_attr("ptr", ibegin=ix-1, jbegin=0, ni=1, nj=jpjglo)
[5385]	2077	!
	2078	CALL iom_update_file_name('ptr')
	2079	!
	2080	END SUBROUTINE set_grid_znl
	2081
[9019]	2082
[1738]	2083	SUBROUTINE set_scalar
	2084	!!----------------------------------------------------------------------
[4148]	2085	!! * ROUTINE set_scalar *
[1738]	2086	!!
	2087	!! ** Purpose : define fake grids for scalar point
	2088	!!
	2089	!!----------------------------------------------------------------------
[5426]	2090	REAL(wp), DIMENSION(1) :: zz = 1.
[1738]	2091	!!----------------------------------------------------------------------
[9019]	2092	!
[7646]	2093	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea-1, jbegin=0, ni=1, nj=1)
[5426]	2094	CALL iom_set_domain_attr('scalarpoint', data_dim=2, data_ibegin = 1, data_ni = 1, data_jbegin = 1, data_nj = 1)
[9019]	2095	!
	2096	zz = REAL( narea, wp )
[5426]	2097	CALL iom_set_domain_attr('scalarpoint', lonvalue=zz, latvalue=zz)
[9019]	2098	!
[1738]	2099	END SUBROUTINE set_scalar
	2100
	2101
[1725]	2102	SUBROUTINE set_xmlatt
	2103	!!----------------------------------------------------------------------
[4148]	2104	!! * ROUTINE set_xmlatt *
[1725]	2105	!!
	2106	!! ** Purpose : automatic definitions of some of the xml attributs...
	2107	!!
	2108	!!----------------------------------------------------------------------
	2109	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[4148]	2110	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2111	CHARACTER(len=1) :: cl1 ! 1 character
[5003]	2112	CHARACTER(len=2) :: cl2 ! 2 characters
	2113	CHARACTER(len=3) :: cl3 ! 3 characters
[4148]	2114	INTEGER :: ji, jg ! loop counters
[1725]	2115	INTEGER :: ix, iy ! i-,j- index
	2116	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	2117	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	2118	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	2119	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	2120	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	2121	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
[7646]	2122	TYPE(xios_duration) :: f_op, f_of
[1725]	2123	!!----------------------------------------------------------------------
	2124	!
	2125	! frequency of the call of iom_put (attribut: freq_op)
[9019]	2126	f_op%timestep = 1 ; f_of%timestep = 0 ; CALL iom_set_field_attr('field_definition', freq_op=f_op, freq_offset=f_of)
	2127	f_op%timestep = 2 ; f_of%timestep = 0 ; CALL iom_set_field_attr('trendT_even' , freq_op=f_op, freq_offset=f_of)
	2128	f_op%timestep = 2 ; f_of%timestep = -1 ; CALL iom_set_field_attr('trendT_odd' , freq_op=f_op, freq_offset=f_of)
	2129	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC' , freq_op=f_op, freq_offset=f_of)
	2130	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC_scalar' , freq_op=f_op, freq_offset=f_of)
[12377]	2131	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('ABL' , freq_op=f_op, freq_offset=f_of)
[7646]	2132
[1725]	2133	! output file names (attribut: name)
[4148]	2134	DO ji = 1, 9
	2135	WRITE(cl1,'(i1)') ji
	2136	CALL iom_update_file_name('file'//cl1)
[1725]	2137	END DO
[4148]	2138	DO ji = 1, 99
	2139	WRITE(cl2,'(i2.2)') ji
	2140	CALL iom_update_file_name('file'//cl2)
	2141	END DO
[5003]	2142	DO ji = 1, 999
	2143	WRITE(cl3,'(i3.3)') ji
	2144	CALL iom_update_file_name('file'//cl3)
	2145	END DO
[1725]	2146
	2147	! Zooms...
	2148	clgrd = (/ 'T', 'U', 'W' /)
	2149	DO jg = 1, SIZE(clgrd) ! grid type
	2150	cl1 = clgrd(jg)
	2151	! Equatorial section (attributs: jbegin, ni, name_suffix)
	2152	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[9930]	2153	CALL iom_set_zoom_domain_attr('Eq'//cl1, ibegin=0, jbegin=iy-1, ni=jpiglo, nj=1 )
[4148]	2154	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	2155	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	2156	CALL iom_update_file_name('Eq'//cl1)
[1725]	2157	END DO
	2158	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	2159	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	2160	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	2161	CALL set_mooring( zlontao, zlattao )
	2162	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	2163	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	2164	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	2165	CALL set_mooring( zlonrama, zlatrama )
	2166	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	2167	zlonpira = (/ -38.0, -23.0, -10.0 /)
	2168	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	2169	CALL set_mooring( zlonpira, zlatpira )
[9019]	2170	!
[1725]	2171	END SUBROUTINE set_xmlatt
	2172
	2173
[9019]	2174	SUBROUTINE set_mooring( plon, plat )
[1725]	2175	!!----------------------------------------------------------------------
[4148]	2176	!! * ROUTINE set_mooring *
[1725]	2177	!!
	2178	!! ** Purpose : automatic definitions of moorings xml attributs...
	2179	!!
	2180	!!----------------------------------------------------------------------
[9019]	2181	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
[1725]	2182	!
	2183	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	2184	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[4148]	2185	CHARACTER(len=256) :: clname ! file name
	2186	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	2187	CHARACTER(len=1) :: cl1 ! 1 character
	2188	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	2189	INTEGER :: ji, jj, jg ! loop counters
	2190	INTEGER :: ix, iy ! i-,j- index
	2191	REAL(wp) :: zlon, zlat
	2192	!!----------------------------------------------------------------------
	2193	DO jg = 1, SIZE(clgrd)
	2194	cl1 = clgrd(jg)
	2195	DO ji = 1, SIZE(plon)
	2196	DO jj = 1, SIZE(plat)
	2197	zlon = plon(ji)
	2198	zlat = plat(jj)
	2199	! modifications for RAMA moorings
	2200	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	2201	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	2202	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	2203	! modifications for PIRATA moorings
	2204	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	2205	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	2206	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	2207	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	2208	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	2209	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	2210	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	2211	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	2212	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	2213	IF( zlon >= 0. ) THEN
	2214	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	2215	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	2216	ENDIF
	2217	ELSE
	2218	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	2219	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	2220	ENDIF
	2221	ENDIF
	2222	IF( zlat >= 0. ) THEN
	2223	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	2224	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	2225	ENDIF
	2226	ELSE
	2227	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	2228	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	2229	ENDIF
	2230	ENDIF
	2231	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[9930]	2232	CALL iom_set_zoom_domain_attr(TRIM(clname)//cl1, ibegin= ix-1, jbegin= iy-1, ni=1, nj=1)
[7646]	2233
[4148]	2234	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	2235	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	2236	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	2237	END DO
	2238	END DO
	2239	END DO
	2240
	2241	END SUBROUTINE set_mooring
	2242
[4148]	2243
	2244	SUBROUTINE iom_update_file_name( cdid )
	2245	!!----------------------------------------------------------------------
	2246	!! * ROUTINE iom_update_file_name *
	2247	!!
	2248	!! ** Purpose :
	2249	!!
	2250	!!----------------------------------------------------------------------
	2251	CHARACTER(LEN=*) , INTENT(in) :: cdid
	2252	!
	2253	CHARACTER(LEN=256) :: clname
	2254	CHARACTER(LEN=20) :: clfreq
	2255	CHARACTER(LEN=20) :: cldate
	2256	INTEGER :: idx
	2257	INTEGER :: jn
	2258	INTEGER :: itrlen
	2259	INTEGER :: iyear, imonth, iday, isec
	2260	REAL(wp) :: zsec
	2261	LOGICAL :: llexist
[7646]	2262	TYPE(xios_duration) :: output_freq
[4148]	2263	!!----------------------------------------------------------------------
[9019]	2264	!
	2265	DO jn = 1, 2
	2266	!
[7646]	2267	output_freq = xios_duration(0,0,0,0,0,0)
	2268	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = output_freq )
[4148]	2269	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
[9019]	2270	!
[4148]	2271	IF ( TRIM(clname) /= '' ) THEN
[9019]	2272	!
[4148]	2273	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2274	DO WHILE ( idx /= 0 )
	2275	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	2276	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	2277	END DO
[9019]	2278	!
[4148]	2279	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	2280	DO WHILE ( idx /= 0 )
[7646]	2281	IF ( output_freq%timestep /= 0) THEN
	2282	WRITE(clfreq,'(I18,A2)')INT(output_freq%timestep),'ts'
	2283	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7764]	2284	ELSE IF ( output_freq%second /= 0 ) THEN
	2285	WRITE(clfreq,'(I19,A1)')INT(output_freq%second),'s'
	2286	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2287	ELSE IF ( output_freq%minute /= 0 ) THEN
[7768]	2288	WRITE(clfreq,'(I18,A2)')INT(output_freq%minute),'mi'
[7764]	2289	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7646]	2290	ELSE IF ( output_freq%hour /= 0 ) THEN
	2291	WRITE(clfreq,'(I19,A1)')INT(output_freq%hour),'h'
	2292	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2293	ELSE IF ( output_freq%day /= 0 ) THEN
	2294	WRITE(clfreq,'(I19,A1)')INT(output_freq%day),'d'
	2295	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2296	ELSE IF ( output_freq%month /= 0 ) THEN
	2297	WRITE(clfreq,'(I19,A1)')INT(output_freq%month),'m'
	2298	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2299	ELSE IF ( output_freq%year /= 0 ) THEN
	2300	WRITE(clfreq,'(I19,A1)')INT(output_freq%year),'y'
	2301	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2302	ELSE
[4148]	2303	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	2304	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
[7646]	2305	ENDIF
	2306	clname = clname(1:idx-1)//TRIM(ADJUSTL(clfreq))//clname(idx+6:LEN_TRIM(clname))
	2307	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
[4148]	2308	END DO
[9019]	2309	!
[4148]	2310	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2311	DO WHILE ( idx /= 0 )
[12489]	2312	cldate = iom_sdate( fjulday - rn_Dt / rday )
[4148]	2313	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	2314	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2315	END DO
[9019]	2316	!
[4148]	2317	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2318	DO WHILE ( idx /= 0 )
[12489]	2319	cldate = iom_sdate( fjulday - rn_Dt / rday, ldfull = .TRUE. )
[4148]	2320	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	2321	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2322	END DO
[9019]	2323	!
[4148]	2324	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2325	DO WHILE ( idx /= 0 )
[12489]	2326	cldate = iom_sdate( fjulday + rn_Dt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
[4148]	2327	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	2328	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2329	END DO
[9019]	2330	!
[4148]	2331	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2332	DO WHILE ( idx /= 0 )
[12489]	2333	cldate = iom_sdate( fjulday + rn_Dt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
[4148]	2334	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	2335	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2336	END DO
[9019]	2337	!
[12377]	2338	IF( jn == 1 .AND. TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
[4148]	2339	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	2340	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
[9019]	2341	!
[4148]	2342	ENDIF
[9019]	2343	!
[4148]	2344	END DO
[9019]	2345	!
[4148]	2346	END SUBROUTINE iom_update_file_name
	2347
	2348
	2349	FUNCTION iom_sdate( pjday, ld24, ldfull )
	2350	!!----------------------------------------------------------------------
	2351	!! * ROUTINE iom_sdate *
	2352	!!
	2353	!! ** Purpose : send back the date corresponding to the given julian day
	2354	!!----------------------------------------------------------------------
[9019]	2355	REAL(wp), INTENT(in ) :: pjday ! julian day
	2356	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	2357	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
[4148]	2358	!
	2359	CHARACTER(LEN=20) :: iom_sdate
	2360	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	2361	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	2362	REAL(wp) :: zsec
	2363	LOGICAL :: ll24, llfull
[9019]	2364	!!----------------------------------------------------------------------
[4148]	2365	!
	2366	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	2367	ELSE ; ll24 = .FALSE.
	2368	ENDIF
[9019]	2369	!
[4148]	2370	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	2371	ELSE ; llfull = .FALSE.
	2372	ENDIF
[9019]	2373	!
[4148]	2374	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	2375	isec = NINT(zsec)
[9019]	2376	!
[4148]	2377	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	2378	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	2379	isec = 86400
	2380	ENDIF
[9019]	2381	!
[4148]	2382	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	2383	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	2384	ENDIF
[9019]	2385	!
[5656]	2386	!$AGRIF_DO_NOT_TREAT
[9019]	2387	! needed in the conv
[4148]	2388	IF( llfull ) THEN
	2389	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	2390	ihour = isec / 3600
	2391	isec = MOD(isec, 3600)
	2392	iminute = isec / 60
	2393	isec = MOD(isec, 60)
	2394	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	2395	ELSE
	2396	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	2397	ENDIF
[5656]	2398	!$AGRIF_END_DO_NOT_TREAT
[9019]	2399	!
[4148]	2400	END FUNCTION iom_sdate
	2401
[1359]	2402	#else
[9019]	2403	!!----------------------------------------------------------------------
	2404	!! NOT 'key_iomput' a few dummy routines
	2405	!!----------------------------------------------------------------------
[4152]	2406	SUBROUTINE iom_setkt( kt, cdname )
	2407	INTEGER , INTENT(in):: kt
	2408	CHARACTER(LEN=*), INTENT(in) :: cdname
	2409	IF( .FALSE. ) WRITE(numout,*) kt, cdname ! useless test to avoid compilation warnings
[1359]	2410	END SUBROUTINE iom_setkt
	2411
[4152]	2412	SUBROUTINE iom_context_finalize( cdname )
	2413	CHARACTER(LEN=*), INTENT(in) :: cdname
	2414	IF( .FALSE. ) WRITE(numout,*) cdname ! useless test to avoid compilation warnings
	2415	END SUBROUTINE iom_context_finalize
	2416
[12377]	2417	SUBROUTINE iom_update_file_name( cdid )
	2418	CHARACTER(LEN=*), INTENT(in) :: cdid
	2419	IF( .FALSE. ) WRITE(numout,*) cdid ! useless test to avoid compilation warnings
	2420	END SUBROUTINE iom_update_file_name
	2421
[1359]	2422	#endif
[4689]	2423
	2424	LOGICAL FUNCTION iom_use( cdname )
	2425	CHARACTER(LEN=*), INTENT(in) :: cdname
	2426	#if defined key_iomput
	2427	iom_use = xios_field_is_active( cdname )
	2428	#else
	2429	iom_use = .FALSE.
	2430	#endif
	2431	END FUNCTION iom_use
[11536]	2432
	2433	SUBROUTINE iom_miss_val( cdname, pmiss_val )
	2434	CHARACTER(LEN=*), INTENT(in ) :: cdname
	2435	REAL(wp) , INTENT(out) :: pmiss_val
	2436	#if defined key_iomput
	2437	! get missing value
	2438	CALL xios_get_field_attr( cdname, default_value = pmiss_val )
	2439	#else
	2440	IF( .FALSE. ) WRITE(numout,*) cdname, pmiss_val ! useless test to avoid compilation warnings
[12377]	2441	IF( .FALSE. ) pmiss_val = 0._wp ! useless assignment to avoid compilation warnings
[11536]	2442	#endif
	2443	END SUBROUTINE iom_miss_val
	2444
[544]	2445	!!======================================================================
	2446	END MODULE iom

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