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chap_LDF.tex in NEMO/trunk/doc/latex/NEMO/subfiles – NEMO

source: NEMO/trunk/doc/latex/NEMO/subfiles/chap_LDF.tex @ 10146

Last change on this file since 10146 was 10146, checked in by nicolasmartin, 6 years ago

Reorganisation for future addition of .rst files from users wiki extraction

  • Create root directories latex and rst for tidy up
  • Move namelists folder to the root with the aim to gather later all namelist groups here (OCE, ICE & TOP) Also building scripts have been modified so that figures is now expected to be present at the root
  • Create bin directory with namelist utilities (check and update)
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    • model_interfacing.rst
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1\documentclass[../tex_main/NEMO_manual]{subfiles}
2\begin{document}
3
4% ================================================================
5% Chapter ———  Lateral Ocean Physics (LDF)
6% ================================================================
7\chapter{Lateral Ocean Physics (LDF)}
8\label{chap:LDF}
9\minitoc
10
11
12\newpage
13$\ $\newline    % force a new ligne
14
15
16The lateral physics terms in the momentum and tracer equations have been
17described in \autoref{eq:PE_zdf} and their discrete formulation in \autoref{sec:TRA_ldf} 
18and \autoref{sec:DYN_ldf}). In this section we further discuss each lateral physics option.
19Choosing one lateral physics scheme means for the user defining,
20(1) the type of operator used (laplacian or bilaplacian operators, or no lateral mixing term) ;
21(2) the direction along which the lateral diffusive fluxes are evaluated (model level, geopotential or isopycnal surfaces) ; and
22(3) the space and time variations of the eddy coefficients.
23These three aspects of the lateral diffusion are set through namelist parameters
24(see the \textit{\ngn{nam\_traldf}} and \textit{\ngn{nam\_dynldf}} below).
25Note that this chapter describes the standard implementation of iso-neutral
26tracer mixing, and Griffies's implementation, which is used if
27\np{traldf\_grif}\forcode{ = .true.}, is described in Appdx\autoref{apdx:triad}
28
29%-----------------------------------nam_traldf - nam_dynldf--------------------------------------------
30
31\nlst{namtra_ldf} 
32
33\nlst{namdyn_ldf} 
34%--------------------------------------------------------------------------------------------------------------
35
36
37% ================================================================
38% Direction of lateral Mixing
39% ================================================================
40\section{Direction of lateral mixing (\protect\mdl{ldfslp})}
41\label{sec:LDF_slp}
42
43%%%
44\gmcomment{  we should emphasize here that the implementation is a rather old one.
45Better work can be achieved by using \citet{Griffies_al_JPO98, Griffies_Bk04} iso-neutral scheme. }
46
47A direction for lateral mixing has to be defined when the desired operator does
48not act along the model levels. This occurs when $(a)$ horizontal mixing is
49required on tracer or momentum (\np{ln\_traldf\_hor} or \np{ln\_dynldf\_hor})
50in $s$- or mixed $s$-$z$- coordinates, and $(b)$ isoneutral mixing is required
51whatever the vertical coordinate is. This direction of mixing is defined by its
52slopes in the \textbf{i}- and \textbf{j}-directions at the face of the cell of the
53quantity to be diffused. For a tracer, this leads to the following four slopes :
54$r_{1u}$, $r_{1w}$, $r_{2v}$, $r_{2w}$ (see \autoref{eq:tra_ldf_iso}), while
55for momentum the slopes are  $r_{1t}$, $r_{1uw}$, $r_{2f}$, $r_{2uw}$ for
56$u$ and  $r_{1f}$, $r_{1vw}$, $r_{2t}$, $r_{2vw}$ for $v$.
57
58%gm% add here afigure of the slope in i-direction
59
60\subsection{Slopes for tracer geopotential mixing in the $s$-coordinate}
61
62In $s$-coordinates, geopotential mixing ($i.e.$ horizontal mixing) $r_1$ and
63$r_2$ are the slopes between the geopotential and computational surfaces.
64Their discrete formulation is found by locally solving \autoref{eq:tra_ldf_iso} 
65when the diffusive fluxes in the three directions are set to zero and $T$ is
66assumed to be horizontally uniform, $i.e.$ a linear function of $z_T$, the
67depth of a $T$-point.
68%gm { Steven : My version is obviously wrong since I'm left with an arbitrary constant which is the local vertical temperature gradient}
69
70\begin{equation} \label{eq:ldfslp_geo}
71\begin{aligned}
72 r_{1u} &= \frac{e_{3u}}{ \left( e_{1u}\;\overline{\overline{e_{3w}}}^{\,i+1/2,\,k} \right)}
73           \;\delta_{i+1/2}[z_t]
74      &\approx \frac{1}{e_{1u}}\; \delta_{i+1/2}[z_t] \ \ \
75\\
76 r_{2v} &= \frac{e_{3v}}{\left( e_{2v}\;\overline{\overline{e_{3w}}}^{\,j+1/2,\,k} \right)} 
77           \;\delta_{j+1/2} [z_t]
78      &\approx \frac{1}{e_{2v}}\; \delta_{j+1/2}[z_t] \ \ \
79\\
80 r_{1w} &= \frac{1}{e_{1w}}\;\overline{\overline{\delta_{i+1/2}[z_t]}}^{\,i,\,k+1/2}
81      &\approx \frac{1}{e_{1w}}\; \delta_{i+1/2}[z_{uw}]
82 \\
83 r_{2w} &= \frac{1}{e_{2w}}\;\overline{\overline{\delta_{j+1/2}[z_t]}}^{\,j,\,k+1/2}
84      &\approx \frac{1}{e_{2w}}\; \delta_{j+1/2}[z_{vw}]
85 \\
86\end{aligned}
87\end{equation}
88
89%gm%  caution I'm not sure the simplification was a good idea!
90
91These slopes are computed once in \rou{ldfslp\_init} when \np{ln\_sco}\forcode{ = .true.}rue,
92and either \np{ln\_traldf\_hor}\forcode{ = .true.}rue or \np{ln\_dynldf\_hor}\forcode{ = .true.}rue.
93
94\subsection{Slopes for tracer iso-neutral mixing}
95\label{subsec:LDF_slp_iso}
96In iso-neutral mixing  $r_1$ and $r_2$ are the slopes between the iso-neutral
97and computational surfaces. Their formulation does not depend on the vertical
98coordinate used. Their discrete formulation is found using the fact that the
99diffusive fluxes of locally referenced potential density ($i.e.$ $in situ$ density)
100vanish. So, substituting $T$ by $\rho$ in \autoref{eq:tra_ldf_iso} and setting the
101diffusive fluxes in the three directions to zero leads to the following definition for
102the neutral slopes:
103
104\begin{equation} \label{eq:ldfslp_iso}
105\begin{split}
106 r_{1u} &= \frac{e_{3u}}{e_{1u}}\; \frac{\delta_{i+1/2}[\rho]}
107                        {\overline{\overline{\delta_{k+1/2}[\rho]}}^{\,i+1/2,\,k}}
108\\
109 r_{2v} &= \frac{e_{3v}}{e_{2v}}\; \frac{\delta_{j+1/2}\left[\rho \right]}
110                        {\overline{\overline{\delta_{k+1/2}[\rho]}}^{\,j+1/2,\,k}}
111\\
112 r_{1w} &= \frac{e_{3w}}{e_{1w}}\; 
113         \frac{\overline{\overline{\delta_{i+1/2}[\rho]}}^{\,i,\,k+1/2}}
114             {\delta_{k+1/2}[\rho]}
115\\
116 r_{2w} &= \frac{e_{3w}}{e_{2w}}\; 
117         \frac{\overline{\overline{\delta_{j+1/2}[\rho]}}^{\,j,\,k+1/2}}
118             {\delta_{k+1/2}[\rho]}
119\\
120\end{split}
121\end{equation}
122
123%gm% rewrite this as the explanation is not very clear !!!
124%In practice, \autoref{eq:ldfslp_iso} is of little help in evaluating the neutral surface slopes. Indeed, for an unsimplified equation of state, the density has a strong dependancy on pressure (here approximated as the depth), therefore applying \autoref{eq:ldfslp_iso} using the $in situ$ density, $\rho$, computed at T-points leads to a flattening of slopes as the depth increases. This is due to the strong increase of the $in situ$ density with depth.
125
126%By definition, neutral surfaces are tangent to the local $in situ$ density \citep{McDougall1987}, therefore in \autoref{eq:ldfslp_iso}, all the derivatives have to be evaluated at the same local pressure (which in decibars is approximated by the depth in meters).
127
128%In the $z$-coordinate, the derivative of the  \autoref{eq:ldfslp_iso} numerator is evaluated at the same depth \nocite{as what?} ($T$-level, which is the same as the $u$- and $v$-levels), so  the $in situ$ density can be used for its evaluation.
129
130As the mixing is performed along neutral surfaces, the gradient of $\rho$ in
131\autoref{eq:ldfslp_iso} has to be evaluated at the same local pressure (which,
132in decibars, is approximated by the depth in meters in the model). Therefore
133\autoref{eq:ldfslp_iso} cannot be used as such, but further transformation is
134needed depending on the vertical coordinate used:
135
136\begin{description}
137
138\item[$z$-coordinate with full step : ] in \autoref{eq:ldfslp_iso} the densities
139appearing in the $i$ and $j$ derivatives  are taken at the same depth, thus
140the $in situ$ density can be used. This is not the case for the vertical
141derivatives: $\delta_{k+1/2}[\rho]$ is replaced by $-\rho N^2/g$, where $N^2$ 
142is the local Brunt-Vais\"{a}l\"{a} frequency evaluated following
143\citet{McDougall1987} (see \autoref{subsec:TRA_bn2}).
144
145\item[$z$-coordinate with partial step : ] this case is identical to the full step
146case except that at partial step level, the \emph{horizontal} density gradient
147is evaluated as described in \autoref{sec:TRA_zpshde}.
148
149\item[$s$- or hybrid $s$-$z$- coordinate : ] in the current release of \NEMO,
150iso-neutral mixing is only employed for $s$-coordinates if the
151Griffies scheme is used (\np{traldf\_grif}\forcode{ = .true.}; see Appdx \autoref{apdx:triad}).
152In other words, iso-neutral mixing will only be accurately represented with a
153linear equation of state (\np{nn\_eos}\forcode{ = 1..2}). In the case of a "true" equation
154of state, the evaluation of $i$ and $j$ derivatives in \autoref{eq:ldfslp_iso} 
155will include a pressure dependent part, leading to the wrong evaluation of
156the neutral slopes.
157
158%gm%
159Note: The solution for $s$-coordinate passes trough the use of different
160(and better) expression for the constraint on iso-neutral fluxes. Following
161\citet{Griffies_Bk04}, instead of specifying directly that there is a zero neutral
162diffusive flux of locally referenced potential density, we stay in the $T$-$S$ 
163plane and consider the balance between the neutral direction diffusive fluxes
164of potential temperature and salinity:
165\begin{equation}
166\alpha \ \textbf{F}(T) = \beta \ \textbf{F}(S)
167\end{equation}
168%gm{  where vector F is ....}
169
170This constraint leads to the following definition for the slopes:
171
172\begin{equation} \label{eq:ldfslp_iso2}
173\begin{split}
174 r_{1u} &= \frac{e_{3u}}{e_{1u}}\; \frac
175      {\alpha_u \;\delta_{i+1/2}[T] - \beta_u \;\delta_{i+1/2}[S]}
176      {\alpha_u \;\overline{\overline{\delta_{k+1/2}[T]}}^{\,i+1/2,\,k}
177       -\beta_\;\overline{\overline{\delta_{k+1/2}[S]}}^{\,i+1/2,\,k} }
178\\
179 r_{2v} &= \frac{e_{3v}}{e_{2v}}\; \frac
180      {\alpha_v \;\delta_{j+1/2}[T] - \beta_v \;\delta_{j+1/2}[S]}
181      {\alpha_v \;\overline{\overline{\delta_{k+1/2}[T]}}^{\,j+1/2,\,k}
182       -\beta_\;\overline{\overline{\delta_{k+1/2}[S]}}^{\,j+1/2,\,k} }
183\\
184 r_{1w} &= \frac{e_{3w}}{e_{1w}}\; \frac
185      {\alpha_w \;\overline{\overline{\delta_{i+1/2}[T]}}^{\,i,\,k+1/2}
186       -\beta_\;\overline{\overline{\delta_{i+1/2}[S]}}^{\,i,\,k+1/2} }
187      {\alpha_w \;\delta_{k+1/2}[T] - \beta_w \;\delta_{k+1/2}[S]}
188\\
189 r_{2w} &= \frac{e_{3w}}{e_{2w}}\; \frac
190      {\alpha_w \;\overline{\overline{\delta_{j+1/2}[T]}}^{\,j,\,k+1/2}
191       -\beta_\;\overline{\overline{\delta_{j+1/2}[S]}}^{\,j,\,k+1/2} }
192      {\alpha_w \;\delta_{k+1/2}[T] - \beta_w \;\delta_{k+1/2}[S]}
193\\
194\end{split}
195\end{equation}
196where $\alpha$ and $\beta$, the thermal expansion and saline contraction
197coefficients introduced in \autoref{subsec:TRA_bn2}, have to be evaluated at the three
198velocity points. In order to save computation time, they should be approximated
199by the mean of their values at $T$-points (for example in the case of $\alpha$
200$\alpha_u=\overline{\alpha_T}^{i+1/2}$$\alpha_v=\overline{\alpha_T}^{j+1/2}$ 
201and $\alpha_w=\overline{\alpha_T}^{k+1/2}$).
202
203Note that such a formulation could be also used in the $z$-coordinate and
204$z$-coordinate with partial steps cases.
205
206\end{description}
207
208This implementation is a rather old one. It is similar to the one
209proposed by Cox [1987], except for the background horizontal
210diffusion. Indeed, the Cox implementation of isopycnal diffusion in
211GFDL-type models requires a minimum background horizontal diffusion
212for numerical stability reasons.  To overcome this problem, several
213techniques have been proposed in which the numerical schemes of the
214ocean model are modified \citep{Weaver_Eby_JPO97,
215  Griffies_al_JPO98}. Griffies's scheme is now available in \NEMO if
216\np{traldf\_grif\_iso} is set true; see Appdx \autoref{apdx:triad}. Here,
217another strategy is presented \citep{Lazar_PhD97}: a local
218filtering of the iso-neutral slopes (made on 9 grid-points) prevents
219the development of grid point noise generated by the iso-neutral
220diffusion operator (\autoref{fig:LDF_ZDF1}). This allows an
221iso-neutral diffusion scheme without additional background horizontal
222mixing. This technique can be viewed as a diffusion operator that acts
223along large-scale (2~$\Delta$x) \gmcomment{2deltax doesnt seem very
224  large scale} iso-neutral surfaces. The diapycnal diffusion required
225for numerical stability is thus minimized and its net effect on the
226flow is quite small when compared to the effect of an horizontal
227background mixing.
228
229Nevertheless, this iso-neutral operator does not ensure that variance cannot increase,
230contrary to the \citet{Griffies_al_JPO98} operator which has that property.
231
232%>>>>>>>>>>>>>>>>>>>>>>>>>>>>
233\begin{figure}[!ht]      \begin{center}
234\includegraphics[width=0.70\textwidth]{Fig_LDF_ZDF1}
235\caption {    \protect\label{fig:LDF_ZDF1}
236averaging procedure for isopycnal slope computation.}
237\end{center}    \end{figure}
238%>>>>>>>>>>>>>>>>>>>>>>>>>>>>
239
240%There are three additional questions about the slope calculation.
241%First the expression for the rotation tensor has been obtain assuming the "small slope" approximation, so a bound has to be imposed on slopes.
242%Second, numerical stability issues also require a bound on slopes.
243%Third, the question of boundary condition specified on slopes...
244
245%from griffies: chapter 13.1....
246
247
248
249% In addition and also for numerical stability reasons \citep{Cox1987, Griffies_Bk04},
250% the slopes are bounded by $1/100$ everywhere. This limit is decreasing linearly
251% to zero fom $70$ meters depth and the surface (the fact that the eddies "feel" the
252% surface motivates this flattening of isopycnals near the surface).
253
254For numerical stability reasons \citep{Cox1987, Griffies_Bk04}, the slopes must also
255be bounded by $1/100$ everywhere. This constraint is applied in a piecewise linear
256fashion, increasing from zero at the surface to $1/100$ at $70$ metres and thereafter
257decreasing to zero at the bottom of the ocean. (the fact that the eddies "feel" the
258surface motivates this flattening of isopycnals near the surface).
259
260%>>>>>>>>>>>>>>>>>>>>>>>>>>>>
261\begin{figure}[!ht]     \begin{center}
262\includegraphics[width=0.70\textwidth]{Fig_eiv_slp}
263\caption {     \protect\label{fig:eiv_slp}
264Vertical profile of the slope used for lateral mixing in the mixed layer :
265\textit{(a)} in the real ocean the slope is the iso-neutral slope in the ocean interior,
266which has to be adjusted at the surface boundary (i.e. it must tend to zero at the
267surface since there is no mixing across the air-sea interface: wall boundary
268condition). Nevertheless, the profile between the surface zero value and the interior
269iso-neutral one is unknown, and especially the value at the base of the mixed layer ;
270\textit{(b)} profile of slope using a linear tapering of the slope near the surface and
271imposing a maximum slope of 1/100 ; \textit{(c)} profile of slope actually used in
272\NEMO: a linear decrease of the slope from zero at the surface to its ocean interior
273value computed just below the mixed layer. Note the huge change in the slope at the
274base of the mixed layer between  \textit{(b)}  and \textit{(c)}.}
275\end{center}   \end{figure}
276%>>>>>>>>>>>>>>>>>>>>>>>>>>>>
277
278\colorbox{yellow}{add here a discussion about the flattening of the slopes, vs  tapering the coefficient.}
279
280\subsection{Slopes for momentum iso-neutral mixing}
281
282The iso-neutral diffusion operator on momentum is the same as the one used on
283tracers but applied to each component of the velocity separately (see
284\autoref{eq:dyn_ldf_iso} in section~\autoref{subsec:DYN_ldf_iso}). The slopes between the
285surface along which the diffusion operator acts and the surface of computation
286($z$- or $s$-surfaces) are defined at $T$-, $f$-, and \textit{uw}- points for the
287$u$-component, and $T$-, $f$- and \textit{vw}- points for the $v$-component.
288They are computed from the slopes used for tracer diffusion, $i.e.$ 
289\autoref{eq:ldfslp_geo} and \autoref{eq:ldfslp_iso} :
290
291\begin{equation} \label{eq:ldfslp_dyn}
292\begin{aligned}
293&r_{1t}\ \ = \overline{r_{1u}}^{\,i}       &&&    r_{1f}\ \ &= \overline{r_{1u}}^{\,i+1/2} \\
294&r_{2f} \ \ = \overline{r_{2v}}^{\,j+1/2} &&&   r_{2t}\ &= \overline{r_{2v}}^{\,j} \\
295&r_{1uw}  = \overline{r_{1w}}^{\,i+1/2} &&\ \ \text{and} \ \ &   r_{1vw}&= \overline{r_{1w}}^{\,j+1/2} \\
296&r_{2uw}= \overline{r_{2w}}^{\,j+1/2} &&&         r_{2vw}&= \overline{r_{2w}}^{\,j+1/2}\\
297\end{aligned}
298\end{equation}
299
300The major issue remaining is in the specification of the boundary conditions.
301The same boundary conditions are chosen as those used for lateral
302diffusion along model level surfaces, i.e. using the shear computed along
303the model levels and with no additional friction at the ocean bottom (see
304\autoref{sec:LBC_coast}).
305
306
307% ================================================================
308% Lateral Mixing Operator
309% ================================================================
310\section{Lateral mixing operators (\protect\mdl{traldf}, \protect\mdl{traldf}) }
311\label{sec:LDF_op}
312
313
314   
315% ================================================================
316% Lateral Mixing Coefficients
317% ================================================================
318\section{Lateral mixing coefficient (\protect\mdl{ldftra}, \protect\mdl{ldfdyn}) }
319\label{sec:LDF_coef}
320
321Introducing a space variation in the lateral eddy mixing coefficients changes
322the model core memory requirement, adding up to four extra three-dimensional
323arrays for the geopotential or isopycnal second order operator applied to
324momentum. Six CPP keys control the space variation of eddy coefficients:
325three for momentum and three for tracer. The three choices allow:
326a space variation in the three space directions (\key{traldf\_c3d}\key{dynldf\_c3d}),
327in the horizontal plane (\key{traldf\_c2d}\key{dynldf\_c2d}),
328or in the vertical only (\key{traldf\_c1d}\key{dynldf\_c1d}).
329The default option is a constant value over the whole ocean on both momentum and tracers.
330   
331The number of additional arrays that have to be defined and the gridpoint
332position at which they are defined depend on both the space variation chosen
333and the type of operator used. The resulting eddy viscosity and diffusivity
334coefficients can be a function of more than one variable. Changes in the
335computer code when switching from one option to another have been
336minimized by introducing the eddy coefficients as statement functions
337(include file \hf{ldftra\_substitute} and \hf{ldfdyn\_substitute}). The functions
338are replaced by their actual meaning during the preprocessing step (CPP).
339The specification of the space variation of the coefficient is made in
340\mdl{ldftra} and \mdl{ldfdyn}, or more precisely in include files
341\hf{traldf\_cNd} and \hf{dynldf\_cNd}, with N=1, 2 or 3.
342The user can modify these include files as he/she wishes. The way the
343mixing coefficient are set in the reference version can be briefly described
344as follows:
345
346\subsubsection{Constant mixing coefficients (default option)}
347When none of the \key{dynldf\_...} and \key{traldf\_...} keys are
348defined, a constant value is used over the whole ocean for momentum and
349tracers, which is specified through the \np{rn\_ahm0} and \np{rn\_aht0} namelist
350parameters.
351
352\subsubsection{Vertically varying mixing coefficients (\protect\key{traldf\_c1d} and \key{dynldf\_c1d})} 
353The 1D option is only available when using the $z$-coordinate with full step.
354Indeed in all the other types of vertical coordinate, the depth is a 3D function
355of (\textbf{i},\textbf{j},\textbf{k}) and therefore, introducing depth-dependent
356mixing coefficients will require 3D arrays. In the 1D option, a hyperbolic variation
357of the lateral mixing coefficient is introduced in which the surface value is
358\np{rn\_aht0} (\np{rn\_ahm0}), the bottom value is 1/4 of the surface value,
359and the transition takes place around z=300~m with a width of 300~m
360($i.e.$ both the depth and the width of the inflection point are set to 300~m).
361This profile is hard coded in file \hf{traldf\_c1d}, but can be easily modified by users.
362
363\subsubsection{Horizontally varying mixing coefficients (\protect\key{traldf\_c2d} and \protect\key{dynldf\_c2d})}
364By default the horizontal variation of the eddy coefficient depends on the local mesh
365size and the type of operator used:
366\begin{equation} \label{eq:title}
367  A_l = \left\{     
368   \begin{aligned}
369         & \frac{\max(e_1,e_2)}{e_{max}} A_o^l           & \text{for laplacian operator } \\
370         & \frac{\max(e_1,e_2)^{3}}{e_{max}^{3}} A_o^l          & \text{for bilaplacian operator } 
371   \end{aligned}    \right.
372\end{equation}
373where $e_{max}$ is the maximum of $e_1$ and $e_2$ taken over the whole masked
374ocean domain, and $A_o^l$ is the \np{rn\_ahm0} (momentum) or \np{rn\_aht0} (tracer)
375namelist parameter. This variation is intended to reflect the lesser need for subgrid
376scale eddy mixing where the grid size is smaller in the domain. It was introduced in
377the context of the DYNAMO modelling project \citep{Willebrand_al_PO01}.
378Note that such a grid scale dependance of mixing coefficients significantly increase
379the range of stability of model configurations presenting large changes in grid pacing
380such as global ocean models. Indeed, in such a case, a constant mixing coefficient
381can lead to a blow up of the model due to large coefficient compare to the smallest
382grid size (see \autoref{sec:STP_forward_imp}), especially when using a bilaplacian operator.
383
384Other formulations can be introduced by the user for a given configuration.
385For example, in the ORCA2 global ocean model (see Configurations), the laplacian
386viscosity operator uses \np{rn\_ahm0}~= 4.10$^4$ m$^2$/s poleward of 20$^{\circ}$ 
387north and south and decreases linearly to \np{rn\_aht0}~= 2.10$^3$ m$^2$/s
388at the equator \citep{Madec_al_JPO96, Delecluse_Madec_Bk00}. This modification
389can be found in routine \rou{ldf\_dyn\_c2d\_orca} defined in \mdl{ldfdyn\_c2d}.
390Similar modified horizontal variations can be found with the Antarctic or Arctic
391sub-domain options of ORCA2 and ORCA05 (see \&namcfg namelist).
392
393\subsubsection{Space varying mixing coefficients (\protect\key{traldf\_c3d} and \key{dynldf\_c3d})}
394
395The 3D space variation of the mixing coefficient is simply the combination of the
3961D and 2D cases, $i.e.$ a hyperbolic tangent variation with depth associated with
397a grid size dependence of the magnitude of the coefficient.
398
399\subsubsection{Space and time varying mixing coefficients}
400
401There is no default specification of space and time varying mixing coefficient.
402The only case available is specific to the ORCA2 and ORCA05 global ocean
403configurations. It provides only a tracer
404mixing coefficient for eddy induced velocity (ORCA2) or both iso-neutral and
405eddy induced velocity (ORCA05) that depends on the local growth rate of
406baroclinic instability. This specification is actually used when an ORCA key
407and both \key{traldf\_eiv} and \key{traldf\_c2d} are defined.
408
409$\ $\newline    % force a new ligne
410
411The following points are relevant when the eddy coefficient varies spatially:
412
413(1) the momentum diffusion operator acting along model level surfaces is
414written in terms of curl and divergent components of the horizontal current
415(see \autoref{subsec:PE_ldf}). Although the eddy coefficient could be set to different values
416in these two terms, this option is not currently available.
417
418(2) with an horizontally varying viscosity, the quadratic integral constraints
419on enstrophy and on the square of the horizontal divergence for operators
420acting along model-surfaces are no longer satisfied
421(\autoref{sec:dynldf_properties}).
422
423(3) for isopycnal diffusion on momentum or tracers, an additional purely
424horizontal background diffusion with uniform coefficient can be added by
425setting a non zero value of \np{rn\_ahmb0} or \np{rn\_ahtb0}, a background horizontal
426eddy viscosity or diffusivity coefficient (namelist parameters whose default
427values are $0$). However, the technique used to compute the isopycnal
428slopes is intended to get rid of such a background diffusion, since it introduces
429spurious diapycnal diffusion (see \autoref{sec:LDF_slp}).
430
431(4) when an eddy induced advection term is used (\key{traldf\_eiv}), $A^{eiv}$,
432the eddy induced coefficient has to be defined. Its space variations are controlled
433by the same CPP variable as for the eddy diffusivity coefficient ($i.e.$ 
434\key{traldf\_cNd}).
435
436(5) the eddy coefficient associated with a biharmonic operator must be set to a \emph{negative} value.
437
438(6) it is possible to use both the laplacian and biharmonic operators concurrently.
439
440(7) it is possible to run without explicit lateral diffusion on momentum (\np{ln\_dynldf\_lap}\forcode{ =
441}\np{ln\_dynldf\_bilap}\forcode{ = .false.}). This is recommended when using the UBS advection
442scheme on momentum (\np{ln\_dynadv\_ubs}\forcode{ = .true.}, see \autoref{subsec:DYN_adv_ubs})
443and can be useful for testing purposes.
444
445% ================================================================
446% Eddy Induced Mixing
447% ================================================================
448\section{Eddy induced velocity (\protect\mdl{traadv\_eiv}, \protect\mdl{ldfeiv})}
449\label{sec:LDF_eiv}
450
451%%gm  from Triad appendix  : to be incorporated....
452\gmcomment{
453Values of iso-neutral diffusivity and GM coefficient are set as
454described in \autoref{sec:LDF_coef}. If none of the keys \key{traldf\_cNd},
455N=1,2,3 is set (the default), spatially constant iso-neutral $A_l$ and
456GM diffusivity $A_e$ are directly set by \np{rn\_aeih\_0} and
457\np{rn\_aeiv\_0}. If 2D-varying coefficients are set with
458\key{traldf\_c2d} then $A_l$ is reduced in proportion with horizontal
459scale factor according to \autoref{eq:title} \footnote{Except in global ORCA
460  $0.5^{\circ}$ runs with \key{traldf\_eiv}, where
461  $A_l$ is set like $A_e$ but with a minimum vale of
462  $100\;\mathrm{m}^2\;\mathrm{s}^{-1}$}. In idealised setups with
463\key{traldf\_c2d}, $A_e$ is reduced similarly, but if \key{traldf\_eiv}
464is set in the global configurations with \key{traldf\_c2d}, a horizontally varying $A_e$ is
465instead set from the Held-Larichev parameterisation\footnote{In this
466  case, $A_e$ at low latitudes $|\theta|<20^{\circ}$ is further
467  reduced by a factor $|f/f_{20}|$, where $f_{20}$ is the value of $f$
468  at $20^{\circ}$~N} (\mdl{ldfeiv}) and \np{rn\_aeiv\_0} is ignored
469unless it is zero.
470}
471
472When Gent and McWilliams [1990] diffusion is used (\key{traldf\_eiv} defined),
473an eddy induced tracer advection term is added, the formulation of which
474depends on the slopes of iso-neutral surfaces. Contrary to the case of iso-neutral
475mixing, the slopes used here are referenced to the geopotential surfaces, $i.e.$ 
476\autoref{eq:ldfslp_geo} is used in $z$-coordinates, and the sum \autoref{eq:ldfslp_geo} 
477+ \autoref{eq:ldfslp_iso} in $s$-coordinates. The eddy induced velocity is given by:
478\begin{equation} \label{eq:ldfeiv}
479\begin{split}
480 u^* & = \frac{1}{e_{2u}e_{3u}}\; \delta_k \left[e_{2u} \, A_{uw}^{eiv} \; \overline{r_{1w}}^{\,i+1/2} \right]\\
481v^* & = \frac{1}{e_{1u}e_{3v}}\; \delta_k \left[e_{1v} \, A_{vw}^{eiv} \; \overline{r_{2w}}^{\,j+1/2} \right]\\
482w^* & = \frac{1}{e_{1w}e_{2w}}\; \left\{ \delta_i \left[e_{2u} \, A_{uw}^{eiv} \; \overline{r_{1w}}^{\,i+1/2} \right] + \delta_j \left[e_{1v} \, A_{vw}^{eiv} \; \overline{r_{2w}}^{\,j+1/2} \right] \right\} \\
483\end{split}
484\end{equation}
485where $A^{eiv}$ is the eddy induced velocity coefficient whose value is set
486through \np{rn\_aeiv}, a \textit{nam\_traldf} namelist parameter.
487The three components of the eddy induced velocity are computed and add
488to the eulerian velocity in \mdl{traadv\_eiv}. This has been preferred to a
489separate computation of the advective trends associated with the eiv velocity,
490since it allows us to take advantage of all the advection schemes offered for
491the tracers (see \autoref{sec:TRA_adv}) and not just the $2^{nd}$ order advection
492scheme as in previous releases of OPA \citep{Madec1998}. This is particularly
493useful for passive tracers where \emph{positivity} of the advection scheme is
494of paramount importance.
495
496At the surface, lateral and bottom boundaries, the eddy induced velocity,
497and thus the advective eddy fluxes of heat and salt, are set to zero.
498
499
500
501
502\end{document}
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