source: NEMO/trunk/doc/tex_main/NEMO_manual.bib @ 10124

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3
4@STRING{AP = {Academic Press}}
5
6@STRING{AREPS = {Annual Review of Earth Planetary Science}}
7
8@STRING{ARFM = {Annual Review of Fluid Mechanics}}
9
10@STRING{ASL = {Atmospheric Science Letters}}
11
12@STRING{AW = {Addison-Wesley}}
13
14@STRING{CP = {Clarendon Press}}
15
16@STRING{CD = {Clim. Dyn.}}
17
18@STRING{CUP = {Cambridge University Press}}
19
20@STRING{CSR = {Cont. Shelf Res.}}
21
22@STRING{D = {Dover Publications}}
23
24@STRING{DAO = {Dyn. Atmos. Ocean}}
25
26@STRING{DSR = {Deep-Sea Res.}}
27
28@STRING{E = {Eyrolles}}
29
30@STRING{EFM ={Environ. Fluid Mech.}}
31
32@STRING{GRL = {Geophys. Res. Let.}}
33
34@STRING{I = {Interscience}}
35
36@STRING{JAOT = {J. Atmos. Ocean Tech.}}
37
38@STRING{JAS = {J. Atmos. Sc.}}
39
40@STRING{JC = {J. Climate}}
41
42@STRING{JCP = {J. Comput. Phys.}}
43
44@STRING{JFM = {J. Fluid Mech.}}
45
46@STRING{JGR = {J. Geophys. Res}}
47
48@STRING{JHUP = {The Johns Hopkins University Press}}
49
50@STRING{JMR = {J. Mar. Res.}}
51
52@STRING{JMS = {J. Mar. Sys.}}
53
54@STRING{JMSJ = {J. Met. Soc. Japan}}
55
56@STRING{JPO = {J. Phys. Oceanogr.}}
57
58@STRING{JSC = {J. Supercomputing.}}
59
60@STRING{JWS = {John Wiley and Sons}}
61
62@STRING{M = {Macmillan}}
63
64@STRING{MGH = {McGraw-Hill}}
65
66@STRING{MWR = {Mon. Wea. Rev.}}
67
68@STRING{Nature = {Nat.}}
69
70@STRING{NH = {North-Holland}}
71
72@STRING{Ocean = {Oceanology}}
73
74@STRING{OD = {Ocean Dyn.}}
75
76@STRING{OM = {Ocean Modelling}}
77
78@STRING{OS = {Ocean Sc.}}
79
80@STRING{OUP = {Oxford University Press}}
81
82@STRING{PH = {Prentice-Hall}}
83
84@STRING{PO = {Prog. Oceangr.}}
85
86@STRING{PP = {Pergamon Press}}
87
88@STRING{PRSL = {Proceedings of the Royal Society of London}}
89
90@STRING{QJRMS = {Quart. J. Roy. Meteor. Soc.}}
91
92@STRING{Recherche = {La Recherche}}
93
94@STRING{RGSP = {Rev. Geophys. Space Phys.}}
95
96@STRING{Science = {Science}}
97
98@STRING{SV = {Springer-Verlag}}
99
100@STRING{Tellus = {Tellus}}
101
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103@IEEEtranBSTCTL{IEEEexample:BSTcontrol,
104  CTLdash_repeated_names = "no"
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630  title = {Energy-conserving discretisation of turbulent shear and buoyancy
631   production},
632  journal = OM,
633  year = {2002},
634  volume = {4},  number = {3-4},
635  pages = {347--361},
636  doi = {10.1016/S1463-5003(02)00009-4},
637}
638
639@ARTICLE{Campin2004,
640  author = {J.-M. Campin and A. Adcroft and C. Hill and J. Marshall},
641  title = {Conservation of properties in a free-surface model},
642  journal = OM,
643  year = {2004},
644  volume = {6},  number = {3-4},
645  pages = {221--244}
646}
647
648@ARTICLE{Campin_al_OM08,
649  author = {J.-M. Campin and J. Marshall and D. Ferreira},
650  title = {Sea ice-ocean coupling using a rescaled vertical coordinate z*},
651  journal = OM,
652  year = {2008},
653  volume = {24},  number = {1-2},
654  pages = {1--14},
655  doi = {10.1016/j.ocemod.2008.05.005},
656}
657
658@ARTICLE{Campin_Goosse_Tel99,
659  author = {J.-M. Campin and H. Goosse},
660  title = {Parameterization of density-driven downsloping flow for a coarse-resolution ocean model in z-coordinate},
661  journal = {Tellus},
662  year = {1999},
663  volume = {51},
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665}
666
667@ARTICLE{Carrere_Lyard_GRL03,
668  author = {L. Carr\`{e}re and F. Lyard},
669  title = {Modelling the barotropic response of the global ocean to atmospheric
670   wind and pressure forcing - comparisons with observations},
671  journal = GRL,
672  year = {2003},
673  volume = {30},  number = {6},
674  doi = {10.1029/2002GL016473},
675}
676
677@ARTICLE{Castellari_al_JMS1998,
678  author = {S> Castellari and  N. Pinardi and K. Leaman },
679  title = {A model study of air-sea interactions in the Mediterranean Sea.},
680  journal = JMS,
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682  volume = {18},
683  pages = {89--114}
684}
685
686@TECHREPORT{Chanut2005,
687 author = {J. Chanut},
688 title = {Nesting code for NEMO},
689 year = {2005},
690 institution = {European Union: Marine Environment and Security for the European Area (MERSEA) Integrated Project},
691note = {MERSEA-WP09-MERCA-TASK-9.1.1}
692}
693
694@ARTICLE{Chassignet_al_JPO03,
695  author = {Eric P. Chassignet and Linda T. Smith and George R. Halliwell},
696  title = {North Atlantic Simulations with the Hybrid Coordinate Ocean Model
697   (HYCOM): Impact of the Vertical Coordinate Choice, Reference Pressure, and Thermobaricity},
698  journal = JPO,
699  year = {2003},
700  volume = {33},
701  pages = {2504-2526}
702}
703
704@ARTICLE{Covey_al_CD00,
705  author = {C. Covey and A. Abe-Ouchi and G.J. Boer and B.A. Boville and U. Cubasch
706   and L. Fairhead and G.M. Flato and H. Gordon and E. Guilyardi and X. Jiang
707   and T.C. Johns and H. Le Treut and G. Madec and G.A. Meehl and R. Miller
708   and A. Noda and S. B. Power and E. Roeckner and G. Russell and E.K. Schneider
709   and R.J. Stouffer and L. Terray and J.-S. von Storch},
710  title = {The seasonal cycle in coupled ocean-atmosphere general circulation models},
711  journal = CD,
712  year = {2000},
713  volume = {16},
714  pages = {775--787}
715}
716
717@ARTICLE{Canuto_2001,
718  author = {V. M. Canuto and A. Howard and Y. Cheng and M. S. Dubovikov},
719  title = {Ocean turbulence. PartI: One-point closure model-momentum and heat vertical diffusivities},
720  journal = JPO,
721  year = {2001},
722  volume = {24},  number = {12},
723  pages = {2546--2559}
724}
725
726@ARTICLE{Cox1987,
727  author = {M. Cox},
728  title = {Isopycnal diffusion in a z-coordinate ocean model},
729  journal = OM,
730  year = {1987},
731  volume = {74},
732  pages = {1--9}
733}
734
735@ARTICLE{Craig_Banner_JPO94,
736  author = {P. D. Craig and M. L. Banner},
737  title = {Modeling wave-enhanced turbulence in the ocean surface layer},
738  journal = JPO,
739  year = {1994},
740  volume = {24},  number = {12},
741  pages = {2546--2559}
742}
743
744@ARTICLE{Craik_Leibovich_JFM76,
745  author = {A. D. D. Craik and S. Leibovich},
746  title = {A rational model for Langmuir circulations},
747  journal = JFM,
748  year = {1976},
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750  pages = {401--426}
751}
752
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754  author = {Cravatte, S. and G. Madec and T. Izumo and C. Menkes and A. Bozec},
755  title = {Progress in the 3-D circulation of the eastern equatorial Pacific
756   in a climate ocean model},
757  journal = OM,
758  year = {2007},
759  volume = {17},  number = {1},
760  pages = {28--48}
761}
762
763@BOOK{Daley_Barker_Bk01,
764  author = {R. Daley and E. Barker},
765  title = {NAVDAS Source Book 2001},
766  publisher = {NRL/PU/7530-01-441, Available from the Naval Research Laboratory, Monterey, CA., 93943-5502},
767  year = {2001},
768  pages = {163pp}
769}
770
771@ARTICLE{D'Alessio_al_JPO98,
772  author = {S. J. D. D'Alessio and K. Abdella and N. A. McFarlane},
773  title = {A new second-order turbulence closure scheme for modeling the oceanic mixed layer},
774  journal = JPO,
775  year = {1998},
776  volume = {28},
777  pages = {1624--1641}
778}
779
780
781@ARTICLE{Danabasoglu_al_2008,
782   author = {G. Danabasoglu and R. Ferrari and J. C. McWilliams},
783   title = {Sensitivity of an ocean general circulation model to a parameterization of near-surface eddy fluxes},
784   volume = {21},
785   year = {2008},
786   doi = {10.1175/2007JCLI1508.1},
787   journal = {J. Climate},
788   pages = {1192--1208},
789}
790@ARTICLE{Dandonneau_al_S04,
791  author = {Y. Dandonneau and C. Menkes and T. Gorgues and G. Madec},
792  title = {Reply to Peter Killworth, 2004 : '' Comment on the Oceanic Rossby
793   Waves acting as a “Hay Rake” for ecosystem by-products ''},
794  journal = {Science},
795  year = {2004},
796  volume = {304},
797  pages = {390}
798}
799
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801 author = {H.C. Davies},
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811  title = {AGRIF: Adaptive Grid Refinement In Fortran},
812  journal = {Computers and Geosciences},
813  year = {2008},
814  volume = {34},
815  pages = {8--13}
816}
817
818@article{de_lavergne_JPO2016_mixing,
819   author = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G. Nurser and A. C. Naveira Garabato },
820   title = {On Antarctic Bottom Water consumption in the abyssal ocean},
821   issn = {0022-3670},
822   doi= {10.1175/JPO-D-14-0201.1},
823   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.},
824   journal = {Journal of Physical Oceanography},
825   year = {2016},
826   volume = {46},  pages = {635-–661}
827}
828
829@article{de_lavergne_JPO2016_efficiency,
830   author = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G. Nurser and A. C. Naveira Garabato },
831   title = {The impact of a variable mixing efficiency on the abyssal overturning},
832   issn = {0022-3670},
833   doi = {10.1175/JPO-D-14-0259.1},
834   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.},
835   journal = {Journal of Physical Oceanography},
836   year = {2016},
837   volume = {46},  pages = {663-–681}
838}
839
840@ARTICLE{Delecluse_Madec_Bk00,
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846  year = {2000},
847  pages = {237--313}
848}
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853           dans les mod\`{e}les de circulation oc\'{e}anique.},
854  school = {Doctorat es Applied Mathematiques, Grenoble University, France},
855  year = {2014},
856  pages = {138pp}
857}
858
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864  journal = OS,
865  year = {2007},
866  volume = {3},
867  pages = {149-157}
868}
869
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873   and N. Gruber and A. Ishida and F. Joos and G. Madec and E. Maier−Reimer
874   and J.C. Marshall and R.J. Matear and P. Monfray and A. Mouchet and
875   R. Najjar and J.C. Orr and G.−K. Plattner and J. Sarmiento and R.
876   Schlitzer and R. Slater and I.J. Totterdell and M.−F. Weirig and
877   Y. Yamanaka and A. Yoo},
878  title = {Evaluating global ocean carbon models: the importance of realistic
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881  year = {2004},
882  volume = {18},
883  pages = {GB3017},
884  doi = {10.1029/2003GB002150},
885}
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891  journal = JAOT,
892  year = {2000},
893  volume = {17},
894  pages = {698--707}
895}
896
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900  journal = JPO,
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902  volume = {24},
903  pages = {353--369}
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950   and Y. Gao and N. Gruber and M. W. Hecht and A. Ishida and F. Joos
951   and K. Lindsay and G. Madec and E. Maier-Reimer and J.C. Mashall
952   and R. J. Matear and P. Monfray and G.-K. Plattner and J. Sarmiento
953   and R. Schlitzer and R. Slater and I.J. Totterdell and M.-F. Weirig
954   and Y. Yamanaka and A. Tool},
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958  year = {2002},
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960  pages = {89--120}
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972  doi = {10.1007/s10652-009-9159-y}
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977   and E. M. -Reimer and R. J. Matear and A. Mouchet and I. J. Totterdell
978   and Y. Yamanaka and K. Rodgers and G. Madec and J.C. Orr},
979  title = {Evaluation of OCMIP-2 ocean models’ deep circulation with mantle helium-3},
980  journal = JMS,
981  year = {2004},
982  pages = {1--22}
983}
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985@ARTICLE{D'Ortenzio_al_GRL05,
986  author = {F. D\'Ortenzio and D. Iudicone and C. de Boyer Mont\'{e}gut and P.
987   Testor and D. Antoine and S. Marullo and R. Santoleri and G. Madec},
988  title = {Seasonal variability of the mixed layer depth in the Mediterranean
989   Sea : a new climatology based on analysis of individual profiles},
990  journal = GRL,
991  year = {2005},
992  volume = {32},
993  pages = {L12605},
994  doi = {10.1029/2005GL022463},
995}
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998  author = {G.B. Egbert and R.D. Ray},
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1001  journal = JGR,
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1008  author = {G.B. Egbert and R.D Ray},
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1010   from satellite altimeter data},
1011  journal = {Nature},
1012  year = {2000},
1013  volume = {405},
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1018  author = {P. R. Eiseman and A. P. Stone},
1019  title = {Conservation lows of fluid dynamics -- A survey},
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1023  pages = {12--27}
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1026@ARTICLE{Emile-Geay_Madec_OS09,
1027  author = {J. Emile-Geay and G. Madec},
1028  title = {Geothermal heating, diapycnal mixing and the abyssal circulation},
1029  journal = OS,
1030  year = {2009},
1031  volume = {5},
1032  pages = {281--325}
1033}
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1037 year = {1995},
1038 title = {Use of the flow relaxation scheme in a three-dimensional baroclinic ocean model with realistic topography},
1039 journal = {Tellus},
1040 volume = {47A},
1041 pages = {365--382}
1042}
1043
1044@ARTICLE{EUROMODEL_OA95,
1045  author = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
1046   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
1047   G. Chabert d'Hieres, H. Didelle, P. Gleizon, D. Obaton, M. Cr\'{e}pon,
1048   C. Herbaut, G. Madec, S. Speich, J. Nihoul, J. M. Beckers, P. Brasseur,
1049   E. Deleersnijder, S. Djenidi, J. Font, A. Castellon, E. Garcia-Ladona,
1050   M. J. Lopez-Garcia, M. Manriquez, M. Maso, J. Salat, J. Tintore,
1051   S. Alonso, D. Gomis, A. Viudez, M. Astraldi, D. Bacciola, M. Borghini,
1052   F. Dell'amico, C. Galli, E. Lazzoni, G. P. Gasparini, S. Sparnocchia,
1053   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
1054   the circulation of the Western Mediterranean Sea. Oceanologica Acta,
1055   18, 2, 255-271.},
1056  title = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
1057   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
1058   G. Chabert d'Hieres, H. Didelle, P. Gleizon, D. Obaton, M. Cr\'{e}pon,
1059   C. Herbaut, G. Madec, S. Speich, J. Nihoul, J. M. Beckers, P. Brasseur,
1060   E. Deleersnijder, S. Djenidi, J. Font, A. Castellon, E. Garcia-Ladona,
1061   M. J. Lopez-Garcia, M. Manriquez, M. Maso, J. Salat, J. Tintore,
1062   S. Alonso, D. Gomis, A. Viudez, M. Astraldi, D. Bacciola, M. Borghini,
1063   F. Dell'amico, C. Galli, E. Lazzoni, G. P. Gasparini, S. Sparnocchia,
1064   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
1065   the circulation of the Western Mediterranean Sea.},
1066  journal = {Oceanologica Acta},
1067  year = {1995},
1068  volume = {18},  number = {2},
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1070}
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1072@PHDTHESIS{Farge1987,
1073  author = {M. Farge},
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1075  school = {Doctorat es Mathematiques, Paris VI University, France},
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1079
1080@ARTICLE{Farrow1995,
1081  author = {D. E. Farrow and D. P. Stevens},
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1083   models},
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1085  year = {1995},
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1088}
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1096 pages = {141--164}
1097}
1098
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1101 year = {1994},
1102 title = {A storm surge prediction model for the northern Bay of Bengal with application to the cyclone disaster in April 1991},
1103 journal = JPO,
1104 volume = {24},
1105 pages = {172--190}
1106}
1107
1108@ARTICLE{Fujio1991,
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1111   the deep Pacific},
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1121  journal = JAS,
1122  year = {1988},
1123  volume = {45},
1124  pages = {55--62}
1125}
1126
1127@ARTICLE{Gargett1984,
1128  author = {A. E. Gargett},
1129  title = {Vertical eddy diffusivity in the ocean interior},
1130  journal = JMR,
1131  year = {1984},
1132  volume = {42}
1133}
1134
1135@ARTICLE{Gaspar1990,
1136  author = {P. Gaspar and Y. Gr{\'e}goris and J.-M. Lefevre},
1137  title = {A simple eddy kinetic energy model for simulations of the oceanic vertical mixing\:
1138    Tests at Station Papa and long-term upper ocean study site},
1139  journal = JGR,
1140  year = {1990},
1141  volume = {95},  number = {C9}
1142}
1143
1144@ARTICLE{Gent1990,
1145  author = {P. R. Gent and J. C. Mcwilliams},
1146  title = {Isopycnal Mixing in Ocean Circulation Models},
1147  journal = JPO,
1148  year = {1990},
1149  volume = {20},  number = {1},
1150  pages = {150--155},
1151}
1152
1153@Article{Gentemann_al_JGR09,
1154  author =   {C. L. Gentemann  and P. J. Minnett and B. Ward},
1155  title =        {Profiles of Ocean Surface heating ({POSH}): A new model
1156                  of upper ocean diurnal warming},
1157  journal =     JGR,
1158  year =     {2009},
1159  Volume =   {114},
1160  Pages =    {C07017},
1161  doi =   {10.1029/2008JC004825},
1162  OPTannote =   {}
1163}
1164
1165@ARTICLE{Gerdes1993a,
1166  author = {R. Gerdes},
1167  title = {A primitive equation ocean circulation model using a general vertical
1168   coordinate transformation 1. Description and testing of the model},
1169  journal = JGR,
1170  year = {1993},
1171  volume = {98}
1172}
1173
1174@ARTICLE{Gerdes1993b,
1175  author = {R. Gerdes},
1176  title = {A primitive equation ocean circulation model using a general vertical
1177   coordinate transformation 2. Application to an overflow problem},
1178  journal = JGR,
1179  year = {1993},
1180  volume = {98},
1181  pages = {14703--14726}
1182}
1183
1184@ARTICLE{Gerdes1991,
1185   Author = {Gerdes, R{\"u}diger and K{\"o}berle, Cornelia and Willebrand, J{\"u}rgen},
1186   Doi = {10.1007/BF00210006},
1187   Journal = {Clim. Dynamics},
1188   Number = {4},
1189   Pages = {211--226},
1190   Title = {The influence of numerical advection schemes on the results of ocean general circulation models},
1191   Volume = {5},
1192   Year = {1991},
1193}
1194@TECHREPORT{Gibson_TR86,
1195  author = {J. K. Gibson},
1196  title = {Standard software development and maintenance},
1197  institution = {Operational Dep., ECMWF, Reading, UK.},
1198  year = {1986}
1199}
1200
1201@BOOK{Gill1982,
1202  title = {Atmosphere-Ocean Dynamics},
1203  publisher = {International Geophysics Series, Academic Press, New-York},
1204  year = {1982},
1205  author = {A. E. Gill}
1206}
1207
1208@article{goff_JGR2010,
1209   author = {J. A. Goff},
1210   title = {Global prediction of abyssal hill root-mean-square heights from small-scale altimetric gravity variability},
1211   issn = {2156-2202},
1212   doi = {10.1029/2010JB007867},
1213   abstract = {Abyssal hills, which are pervasive landforms on the seafloor of the Earth's oceans, represent a potential tectonic record of the history of mid-ocean ridge spreading. However, the most detailed global maps of the seafloor, derived from the satellite altimetry-based gravity field, cannot be used to deterministically characterize such small-scale ({\textless}10 km) morphology. Nevertheless, the small-scale variability of the gravity field can be related to the statistical properties of abyssal hill morphology using the upward continuation formulation. In this paper, I construct a global prediction of abyssal hill root-mean-square (rms) heights from the small-scale variability of the altimetric gravity field. The abyssal hill-related component of the gravity field is derived by first masking distinct features, such as seamounts, mid-ocean ridges, and continental margins, and then applying a newly designed adaptive directional filter algorithm to remove fracture zone/discontinuity fabric. A noise field is derived empirically by correlating the rms variability of the small-scale gravity field to the altimetric noise field in regions of very low relief, and the noise variance is subtracted from the small-scale gravity variance. Suites of synthetically derived, abyssal hill formed gravity fields are generated as a function of water depth, basement rms heights, and sediment thickness and used to predict abyssal hill seafloor rms heights from corrected small-scale gravity rms height. The resulting global prediction of abyssal hill rms heights is validated qualitatively by comparing against expected variations in abyssal hill morphology and quantitatively by comparing against actual measurements of rms heights. Although there is scatter, the prediction appears unbiased.},
1214   volume = {115},
1215   number = {B12},
1216   journal = {Journal of Geophysical Research: Solid Earth},
1217   year = {2010},
1218   pages = {B12104},
1219}
1220
1221@ARTICLE{Goosse_al_JGR99,
1222  author = {H. Goosse and E. Deleersnijder and T. Fichefet and M. England},
1223  title = {Sensitivity of a global coupled ocean-sea ice model to the parameterization of vertical mixing},
1224  journal = JGR,
1225  year = {1999},
1226  volume = {104},
1227  pages = {13,681--13,695}
1228}
1229
1230@ARTICLE{Gorgues_al_GRL07,
1231  author = {T. Gorgues and C. Menkes and O. Aumont and K. Rodgers and G. Madec and Y. Dandonneau},
1232  title = {Indonesian Throughflow control of the eastern equatorial Pacific biogeochemistry},
1233  journal = GRL,
1234  year = {2007},
1235  volume = {34},
1236  pages = {L05609},
1237  doi = {10.1029/2006GL028210},
1238}
1239
1240@ARTICLE{Graham_McDougall_JPO13,
1241  author = {F.S. Graham and T.J. McDougall},
1242  title = {Quantifying the nonconservative production of conservative temperature, potential temperature, and entropy},
1243  journal = JPO,
1244  year = {2013},
1245  volume = {43},
1246  pages = {838--862},
1247  doi = {10.1175/JPO-D-11-0188.1}
1248}
1249
1250@ARTICLE{Greatbatch_JGR94,
1251  author = {R. J. Greatbatch},
1252  title = {A note on the representation of steric sea level in models that conserve
1253   volume rather than mass},
1254  journal = JGR,
1255  year = {1994},
1256  volume = {99},  number = {C6},
1257  pages = {12,767--12,771}
1258}
1259
1260@BOOK{Griffies_Bk04,
1261  title = {Fundamentals of ocean climate models},
1262  publisher = {Princeton University Press, 434pp},
1263  year = {2004},
1264  author = {S.M. Griffies}
1265}
1266
1267@ARTICLE{Griffies_JPO98,
1268  author = {S.M. Griffies},
1269  title = {The Gent-McWilliams skew-flux},
1270  journal = JPO,
1271  year = {1998},
1272  volume = {28},
1273  pages = {831--841}
1274}
1275
1276@ARTICLE{Griffies_al_OM09,
1277  author = {S.M. Griffies and A. Biastoch and C. Boning and F. Bryan and G. Danabasoglu
1278   and E. P. Chassignet and M. H. England and R. Gerdes and H. Haak
1279   and R. W. Hallberg and W. Hazeleger and J. Jungclaus and W. G. Large
1280   and G. Madec and A. Pirani and B. L. Samuels and M. Scheinert and
1281   A. Sen Gupta and C. A. Severijns and H. L. Simmons and A.-M. Treguier
1282   and M. Winton and S. Yeager and J. Yin},
1283  title = {Coordinated Ocean-ice Reference Experiments (COREs)},
1284  journal = OM,
1285  year = {2009},
1286  volume = {26},  number = {1-2},
1287  pages = {1--46},
1288  doi = {10.1016/j.ocemod.2008.08.007},
1289}
1290
1291@ARTICLE{Griffies_al_OS05,
1292  author = {S.M. Griffies and A. Gnanadesikan and K.W. Dixon and J.P. Dunne and
1293   R. Gerdes and M.J. Harrison and A. Rosati and J.L. Russell and B.L.
1294   Samuels and M.J. Spelman and M. Winton and R. Zhang},
1295  title = {Formulation of an ocean model for global climate simulations},
1296  journal = OS,
1297  year = {2005},
1298  volume = {1},
1299  pages = {45--79}
1300  }
1301
1302@ARTICLE{Griffies_al_JPO98,
1303  author = {S.M. Griffies and A. Gnanadesikan and R.C. Pacanowski and V.D. Larichev
1304   and J.K. Dukowicz and R.D. Smith},
1305  title = {Isoneutral Diffusion in a z-Coordinate Ocean Model},
1306  journal = JPO,
1307  year = {1998},
1308  volume = {28},  number = {5},
1309  pages = {805--830},
1310}
1311
1312@ARTICLE{Griffies_al_MWR01,
1313  author = {S.M. Griffies and R.C. Pacanowski and M. Schmidt and V. Balaji},
1314  title = {Tracer Conservation with an Explicit Free Surface Method for z-Coordinate
1315   Ocean Models},
1316  journal = MWR,
1317  year = {2001},
1318  volume = {129},  number = {5},
1319  pages = {1081--1098},
1320}
1321
1322@ARTICLE{Griffies_Hallberg_MWR00,
1323  author = {S.M. Griffies and R.W. Hallberg},
1324  title = {Biharmonic friction with a Smagorinsky-like viscosity for use in large-scale eddy-permitting ocean models},
1325  journal = MWR,
1326  year = {2000},
1327  volume = {128}, 
1328  pages = {2935–-2946},
1329  doi = {10.1175/1520-0493(2000)128}
1330}
1331
1332@ARTICLE{Guilyardi_al_JC04,
1333  author = {E. Guilyardi and S. Gualdi and J. M. Slingo and A. Navarra and P. Delecluse
1334    and J. Cole and G. Madec and M. Roberts and M. Latif and L. Terray},
1335  title = {Representing El Ni\~{n}o in coupled ocean-atmosphere GCMs: the dominant role of the atmospheric component},
1336  journal = JC,
1337  year = {2004},
1338  volume = {17},
1339  pages = {4623--4629}
1340}
1341
1342@ARTICLE{Guilyardi_Madec_CD98,
1343  author = {E. Guilyardi and G. Madec},
1344  title = {Performance of the OPA-ARPEGE-T21 global ocean-atmosphere coupled model},
1345  journal = CD,
1346  year = {1997},
1347  volume = {13},
1348  pages = {149--165}
1349}
1350
1351@ARTICLE{Guilyardi_al_CD01,
1352  author = {E. Guilyardi and G. Madec and L. Terray},
1353  title = {The role of lateral ocean physics in the upper ocean thermal balance of a coupled ocean-atmosphere GCM},
1354  journal = CD,
1355  year = {2001},
1356  volume = {17},
1357  pages = {589--599},
1358  number = {8}
1359}
1360
1361@ARTICLE{Guilyardi_al_CRAS95,
1362  author = {E. Guilyardi and G. Madec and L. Terray and M. D\'{e}qu\'{e} and
1363   M. Pontaud and M. Imbard and D. Stephenson and M.-A. Filiberti and
1364   D. Cariolle and P. Delecluse and O. Thual},
1365  title = {Simulation couplée océan-atmosphère de la variabilité du climat},
1366  journal = {C. R. Acad. Sci Paris},
1367  year = {1995},
1368  volume = {320},  number = {s\'{e}rie IIa},
1369  pages = {683--690}
1370}
1371
1372@ARTICLE{Guyon_al_EP99,
1373  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard},
1374  title = {A Parallel ocean model for high resolution studies},
1375  journal = {Lecture Notes in Computer Science},
1376  year = {1999},
1377  volume = {Euro-Par'99},
1378  pages = {603--607}
1379}
1380
1381@ARTICLE{Guyon_al_CalPar99,
1382  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard and C. Herbaut
1383   and P. Fronier},
1384  title = {Parallelization of the OPA ocean model},
1385  journal = {Calculateurs Paralleles},
1386  year = {1999},
1387  volume = {11},  number = {4},
1388  pages = {499--517}
1389}
1390
1391@BOOK{Haltiner1980,
1392  title = {Numerical prediction and dynamic meteorology},
1393  publisher = {John Wiley {\&} Sons Eds., second edition},
1394  year = {1980},
1395  author = {G. J. Haltiner and R. T. Williams},
1396  pages = {477pp}
1397}
1398
1399@ARTICLE{Haney1991,
1400  author = {R. L. Haney},
1401  title = {On the Pressure Gradient Force over Steep Topography in Sigma Coordinate Ocean Models},
1402  journal = JPO,
1403  year = {1991},
1404  volume = {21},  number = {4},
1405  pages = {610--619},
1406}
1407
1408@ARTICLE{Hazeleger_Drijfhout_JPO98,
1409  author = {W. Hazeleger and S. S. Drijfhout},
1410  title = {Mode water variability in a model of the subtropical gyre: response to anomalous forcing},
1411  journal = JPO,
1412  year = {1998},
1413  volume = {28},
1414  pages = {266--288},
1415}
1416
1417@ARTICLE{Hazeleger_Drijfhout_JPO99,
1418  author = {W. Hazeleger and S. S. Drijfhout},
1419  title = {Stochastically forced mode water variability},
1420  journal = JPO,
1421  year = {1999},
1422  volume = {29},
1423  pages = {1772--1786},
1424}
1425
1426@ARTICLE{Hazeleger_Drijfhout_JGR00,
1427  author = {W. Hazeleger and S. S. Drijfhout},
1428  title = {A model study on internally generated variability in subtropical mode water formation},
1429  journal = JGR,
1430  year = {2000},
1431  volume = {105},
1432  pages = {13,965--13,979},
1433}
1434@ARTICLE{Hazeleger_Drijfhout_JPO00,
1435  author = {W. Hazeleger and S. S. Drijfhout},
1436  title = {Eddy subduction in a model of the subtropical gyre},
1437  journal = JPO,
1438  year = {2000},
1439  volume = {30},
1440  pages = {677--695},
1441}
1442
1443@ARTICLE{Hellerman_Rosenstein_JPO83,
1444  author = {S. Hellerman and  M. Rosenstein },
1445  title = {Normal monthly wind stress over the world ocean with error estimates},
1446  journal = JPO,
1447  year = {1983},
1448  volume = {13},
1449  pages = {1093--1104},
1450}
1451
1452@ARTICLE{He_Ding_JSC01,
1453  author = {Y. He and C. H. Q. Ding},
1454  title = {Using Accurate Arithmetics to Improve Numerical Reproducibility and Stability in Parallel Applications},
1455  journal = JSC,
1456  year = {2001},
1457  volume = {18},
1458  pages = {259--277},
1459}
1460
1461@ARTICLE{Hirt_al_JCP74,
1462  author = {C. W. Hirt and A. A. Amsden and J. L. Cook},
1463  title = {An Arbitrary Lagrangian--Eulerian Computing Method for All Flow Speeds},
1464  journal = JCP,
1465  year = {1974},
1466  volume = {14},
1467  pages = {227--253}
1468}
1469
1470@ARTICLE{Hofmeister_al_OM09,
1471  author = {R. Hofmeister and H. Burchard and J.-M. Beckers},
1472  title = {Non-uniform adaptive vertical grids for 3D numerical ocean models},
1473  journal = OM,
1474  year = {2009},
1475  volume = {33},
1476  pages = {70--86},
1477  doi = {10.1016/j.ocemod.2009.12.003},
1478  issn = {1463-5003},
1479}
1480
1481@ARTICLE{Holland1999,
1482  author = {D. Holland and A. Jenkins},
1483  title = {Modeling Thermodynamic Ice-Ocean Interactions at the Base of an Ice Shelf},
1484  journal = JPO,
1485  year = {1999},
1486  volume = {29}, 
1487  pages = {1787--1800},
1488}
1489
1490@ARTICLE{HollowayOM86,
1491  author = {Greg Holloway},
1492  title = {A Shelf Wave/Topographic Pump Drives Mean Coastal Circulation (part I)},
1493  journal = OM,
1494  year = {1986},
1495  volume = {68}, 
1496}
1497
1498@ARTICLE{HollowayJPO92,
1499  author = {Greg Holloway},
1500  title = {Representing Topographic Stress for Large-Scale Ocean Models},
1501  journal = JPO,
1502  year = {1992},
1503  volume = {22}, 
1504  pages = {1033--1046},
1505}
1506
1507@ARTICLE{HollowayJPO94,
1508  author = {Michael Eby and Greg Holloway},
1509  title = {Sensitivity of a Large-Scale Ocean Model to a Parameterization of Topographic Stress},
1510  journal = JPO,
1511  year = {1994},
1512  volume = {24}, 
1513  pages = {2577--2587},
1514}
1515
1516@ARTICLE{HollowayJGR09,
1517  author = {Greg Holloway and Zeliang Wang},
1518  title = {Representing eddy stress in an Arctic Ocean model},
1519  journal = JGR,
1520  year = {2009},
1521  doi = {10.1029/2008JC005169}, 
1522}
1523
1524@ARTICLE{HollowayOM08,
1525  author = {Mathew Maltrud and Greg Holloway},
1526  title = {Implementing biharmonic neptune in a global eddying ocean model},
1527  journal = OM,
1528  year = {2008},
1529  volume = {21}, 
1530  pages = {22--34},
1531}
1532
1533@ARTICLE{Hordoir_al_CD08,
1534  author = {R. Hordoir and J. Polcher and J.-C. Brun-Cottan and G. Madec},
1535  title = {Towards a parametrization of river discharges into ocean general
1536   circulation models: a closure through energy conservation},
1537  journal = CD,
1538  year = {2008},
1539  volume = {31},  number = {7-8},
1540  pages = {891--908},
1541  doi = {10.1007/s00382-008-0416-4},
1542}
1543
1544@ARTICLE{Hsu1990,
1545  author = {Hsu, Yueh-Jiuan G. and Arakawa, Akio},
1546  title = {Numerical Modeling of the Atmosphere with an Isentropic Vertical Coordinate},
1547  journal = MWR,
1548  year = {1990},
1549  volume = {118},  number = {10},
1550  pages = {1933--1959},
1551}
1552
1553@ARTICLE{Huang_JPO93,
1554  author = {R.X. Huang},
1555  title = {Real freshwater flux as a natural boundary condition for the salinity
1556   balance and thermohaline circulation forced by evaporation and precipitation},
1557  journal = JPO,
1558  year = {1993},
1559  volume = {23},
1560  pages = {2428--2446}
1561}
1562
1563@TECHREPORT{Hunke2008,
1564  author = {E.C. Hunke and W.H. Lipscomb},
1565  title = {CICE: the Los Alamos sea ice model documentation and software user's manual,
1566        Version 4.0},
1567  institution = { Los Alamos National Laboratory, N.M.},
1568  publisher = {LA-CC-06-012, Los Alamos National Laboratory, N.M.},
1569  year = {2008}
1570}
1571
1572@TechReport{Hunter2006,
1573  Title                    = {Specification for Test Models of Ice Shelf Cavities},
1574  Author                   = {J. R. Hunter},
1575  Institution              = {Antarctic Climate \& Ecosystems Cooperative Research Centre Private Bag 80, Hobart, Tasmania 7001},
1576  Year                     = {2006},
1577}
1578
1579@TECHREPORT{TEOS10,
1580  author = {IOC and SCOR and IAPSO},
1581  title = {The international thermodynamic equation of seawater - 2010: Calculation and use of thermodynamic properties},
1582  institution = {Intergovernmental Oceanographic Commission},
1583  publisher = {Manuals and Guides No. 56, UNESCO (English)},
1584  year = {2010},
1585  pages = {196pp},
1586  url = {http://www.teos-10.org/pubs/TEOS-10_Manual.pdf}
1587}
1588
1589@ARTICLE{Iudicone_al_JPO08b,
1590  author = {D. Iudicone and G. Madec and B. Blanke and S. Speich},
1591  title = {The role of Southern Ocean surface forcings and mixing in the global conveyor},
1592  journal = JPO,
1593  year = {2008},
1594  volume = {38},
1595  pages = {1377--1400}
1596}
1597
1598@ARTICLE{Iudicone_al_JPO08a,
1599  author = {D. Iudicone and G. Madec and T. J. McDougall},
1600  title = {Diagnosing water transformations and the key role of light penetration},
1601  journal = JPO,
1602  year = {2008},
1603  volume = {38},
1604  pages = {1357--1376}
1605}
1606
1607@ARTICLE{Iudicone_al_JPO07,
1608  author = {D. Iudicone and K. Rodgers and R. Schopp and G. Madec},
1609  title = {An Exchange window for the Antarctic Intermediate Water Injection into the South Pacific},
1610  journal = JPO,
1611  year = {2007},
1612  volume = {37},
1613  pages = {31--49}
1614}
1615
1616@ARTICLE{Iudicone_al_JPO08c,
1617  author = {D. Iudicone and S. Speich and G. Madec and B. Blanke},
1618  title = {The global Conveyor Belt in a Southern Ocean perspective},
1619  journal = JPO,
1620  year = {2008},
1621  volume = {38},
1622  pages = {1401--1425}
1623}
1624
1625@ARTICLE{Izumo_al_CD10,
1626  author = {T. Izumo and S.Masson and J. Vialard and C. de Boyer Montegut and
1627   S. K. Behera and G. Madec and K. Takahashi and T. Yamagata},
1628  title = {Interannual variations of low-frequency Madden-Julian Oscillation in autral summer: Observations},
1629  journal = CD,
1630  year = {2010},
1631  volume = {35},  number = {4},
1632  pages = {669--683},
1633  doi = {10.1007/s00382-009-0655-z}
1634}
1635
1636@ARTICLE{JackMcD1995,
1637  author = {D. R. Jackett and T. J. McDougall},
1638  title = {Minimal adjustment of hydrographic data to achieve static stability},
1639  journal = JAOT,
1640  year = {1995},
1641  volume = {12},
1642  pages = {381--389}
1643}
1644
1645@article{Jackson_Rehmann_JPO2014,
1646   author = {P. R. Jackson and C. R. Rehmann},
1647   title = {Experiments on differential scalar mixing in turbulence in a sheared, stratified flow},
1648   journal = JPO,
1649   volume = {44},
1650   issn = {0022-3670},
1651   doi = {10.1175/JPO-D-14-0027.1},
1652   number = {10},
1653   year = {2014},
1654   pages = {2661--2680},
1655}
1656
1657@ARTICLE{Jayne_St_Laurent_GRL01,
1658  author = {S.R. Jayne and L.C. {St. Laurent}},
1659  title = {Parameterizing tidal disspiation over rough topography},
1660  journal = GRL,
1661  pages = {811--814}
1662}
1663
1664@ARTICLE{Jenkins1991,
1665  author = {A. Jenkins},
1666  title = {A one-dimensional model of ice shelf-ocean interaction},
1667  journal = JGR,
1668  year = {1991},
1669  volume = {96},  number = {C11},
1670  pages = {2298--2312}
1671}
1672
1673@ARTICLE{Jenkins2001,
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1722  url = {http://climate.lanl.gov/Software/SCRIP/SCRIPusers.pdf}
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1764  booktitle = {Parameterization of small-scale processes},
1765  year = {1989},
1766  editor = {Hawaiian winter workshop},
1767  month = {January 17-20},
1768  organization = {University of Hawaii at Manoa}
1769}
1770
1771@ARTICLE{Killworth1992,
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1774  journal = JPO,
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1777  pages = {1379--1387}
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1779
1780@ARTICLE{Koch-Larrouy_al_CD10,
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1782  title = {Tidal mixing in the Indonesian Seas and its effect on the tropical climate system},
1783  journal = CD,
1784  year = {2010},
1785  volume = {34},  number = {6},
1786  pages = {891--904},
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1789
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1793  journal = OD,
1794  year = {2008},
1795  volume = {58},  number = {3-4},
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1797  doi = {10.1007/s10236-008-0155-4},
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1799
1800@ARTICLE{Koch-Larrouy_al_GRL07,
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1803  journal = GRL,
1804  year = {2007},
1805  volume = {34},
1806  pages = {L04604},
1807  doi = {10.1029/2006GL028405},
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1809
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1812  title = {Physical processes contributing to the water mass transformation of the Indonesian Throughflow},
1813  journal = OD,
1814  year = {2008},
1815  volume = {58},  number = {3-4},
1816  pages = {275--288},
1817  doi = {10.1007/s10236-008-0154-5},
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1819
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1832  year = {1975},
1833  volume = {9},
1834  pages = {91--112}
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1836
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1840journal = OM,
1841year = "2012",
1842volume = "52–53", pages = "9--35",
1843issn = "1463-5003",
1844doi = "http://dx.doi.org/10.1016/j.ocemod.2012.04.007",
1845}
1846
1847
1848@ARTICLE{Lemarie_OM2015,
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1850  title = {Stability Constraints for Oceanic Numerical Models:
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1852  journal = OM,
1853  year = {2015},
1854  volume = {92},
1855  pages = {124--148},
1856  doi = {10.1016/j.ocemod.2015.06.006},
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1858
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1863  year = {2001},
1864  volume = {29},
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1867
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1870  title = {Mod\'{e}lisation des processus biog\'{e}ochimiques en M\'{e}diterran\'{e}e
1871           nord-occidentale. Cycle saisonnier et variabilit\'{e} m\'{e}so\'{e}chelle},
1872  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 207pp},
1873  year = {1996}
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1875
1876@ARTICLE{Levy_al_GRL01,
1877  author = {M. L\'{e}vy and A. Estubier and G Madec},
1878  title = {Choice of an advection scheme for biogeochemical models},
1879  journal = GRL,
1880  year = {2001},
1881  volume = {28}
1882}
1883
1884@ARTICLE{Levy_al_OM10,
1885  author = {M. L\'{e}vy and P. Klein and A.-M. Tr\'{e}guier and D. Iovino and
1886   G. Madec and S. Masson and T. Takahashi},
1887  title = {Impacts of sub-mesoscale physics on idealized gyres},
1888  journal = OM,
1889  year = {2010},
1890  volume = {34},  number = {1-2},
1891  doi = {10.1016/j.ocemod.2010.04.001},
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1896  title = {The onset of a bloom after deep winter convection in the Northwestern
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1898   model},
1899  journal = JMS,
1900  year = {1999},
1901  volume = {16},  number = {1-2},
1902  pages = {7--21}
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1904
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1918   variability on the spring bloom in the MEDOC area},
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1920  year = {2000},
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1924
1925@BOOK{Large_Yeager_Rep04,
1926  title = {Diurnal to decadal global forcing for ocean and sea-ice models: the data sets and flux climatologies},
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1934  journal = {Reviews of Geophysics},
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1954   \`{a} la diffusion turbulente dans un mod\`{e}le de circulation g\'{e}n\'{e}rale
1955   id\'{e}alis\'{e}e},
1956  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 200pp},
1957  year = {1997}
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1959
1960@ARTICLE{Lazar_al_JPO99,
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1962  title = {The Deep Interior Downwelling, the Veronis Effect, and Mesoscale
1963   Tracer Transport Parameterizations in an OGCM},
1964  journal = JPO,
1965  year = {1999},
1966  volume = {29},  number = {11},
1967  pages = {2945--2961},
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1969
1970@ARTICLE{Le_Sommer_al_OM09,
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1972   Barnier},
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1974   at eddy permitting resolution},
1975  journal = OM,
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1985   Eul\'{e}rienne dans le code NEMO, 180pp.},
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1987  year = {2010}
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1993  journal = OM,
1994  year = {2009},
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1996  pages = {88-94},
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2000@ARTICLE{Leclair_Madec_OM11,
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2003  journal = OM,
2004  year = {2011},
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2023  year = {2003},
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2026
2027@ARTICLE{Lengaigne_al_JGR02,
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2029   G. Madec and P. Delecluse},
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2031  journal = JGR,
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2033  doi = {10.1029/2001JC000841},
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2035
2036@ARTICLE{Lengaigne_al_JGR03,
2037  author = {M. Lengaigne and G. Madec and G. Alory and C. Menkes},
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2039   on tracer and dynamics},
2040  journal = JGR,
2041  year = {2003},
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2043  pages = {3345},
2044  doi = {10.1029/2002JC001704},
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2047@ARTICLE{Lengaigne_al_GRL09,
2048  author = {M. Lengaigne and G. Madec and L. Bopp and C. Menkes and O. Aumont and P. Cadule},
2049  title = {Bio-physical feedbacks in the Arctic Ocean using an Earth System model},
2050  journal = GRL,
2051  year = {2009},
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2053  pages = {L21602},
2054  doi = {10.1029/2009GL040145},
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2056
2057@ARTICLE{Lengaigne_al_CD07,
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2060   General Circulation Model},
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2066
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2070  journal = {Computer Methods in Applied Mechanics and Engineering},
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2072  pages = {17--74}
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2074
2075@TECHREPORT{Leonard_Rep88,
2076  author = {B. P. Leonard},
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2078  institution = {Technical Memorandum TM-100916 ICOMP-88-11, NASA},
2079  year = {1988}
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2081
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2085   upstream interpolation},
2086  journal = {Computer Methods in Applied Mechanics and Engineering},
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2088  volume = {19},
2089  pages = {59--98},
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2091
2092@TECHREPORT{Levier2007,
2093  author = {B. Levier and A.-M. Tr\'{e}guier and G. Madec and V. Garnier},
2094  title = {Free surface and variable volume in the NEMO code},
2095  institution = {MERSEA MERSEA IP report WP09-CNRS-STR-03-1A, 47pp, available on the
2096   NEMO web site},
2097  year = {2007}
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2099
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2108@ARTICLE{Li_al_OM2017},
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2110   YEAR = {2017},
2111   TITLE = {Statistical Models of Global Langmuir Mixing},
2112   JOURNAL = {OM},
2113   VOLUME = {113},
2114   ISSUE = {May},
2115   PAGES = {95--114},
2116   DOI = {10.1016/j.ocemod.2017.03.016}
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2118
2119@ARTICLE{Li_Garrett_JMR93,
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2128@ARTICLE{Losch2008,
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2132  year = {2008},
2133  volume = {113},  number = {C13},
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2135
2136@TECHREPORT{Lott1989,
2137  author = {F. Lott and G. Madec},
2138  title = {Implementation of bottom topography in the Ocean General Circulation
2139   Model OPA of the LODYC: formalism and experiments.},
2140  institution = {LODYC, France, 36pp.},
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2142  number = {3}
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2144
2145@ARTICLE{Lott_al_OM90,
2146  author = {F. Lott and G. Madec and J. Verron},
2147  title = {Topographic experiments in an Ocean General Circulation Model},
2148  journal = OM,
2149  year = {1990},
2150  volume = {88},
2151  pages = {1--4}
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2154@ARTICLE{Luo_al_JC05,
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2157   coupling physics},
2158  journal = JC,
2159  year = {2005},
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2161  pages = {2344--2360}
2162}
2163
2164@BOOK{Madec_Bk08,
2165  title = {NEMO ocean engine},
2166  publisher = {Note du P\^ole de mod\'{e}lisation, Institut Pierre-Simon Laplace
2167   (IPSL), France, No 27, ISSN No 1288-1619},
2168  year = {2008},
2169  author = {G. Madec}
2170}
2171
2172@BOOK{Madec_HDR01,
2173  title = {Le Cycle des Masses d'Eau Oc\'{e}aniqueset sa variabilit\'{e} dans le Syst\'{e}me Climatique},
2174  year = {2001},
2175  author = {G. Madec},
2176  pages = {63pp.},
2177  series = {Habilitation \'{a} Diriger des Recherches, Universit\'{e} Pierre et Marie Curie}
2178}
2179
2180@PHDTHESIS{Madec_PhD90,
2181  author = {G. Madec},
2182  title = {La formation d'eau profonde et son impact sur la circulation r\'{e}gionale
2183   en M\'{e}diterran\'{e}e Occidentale - une approche num\'{e}rique},
2184  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 194pp.},
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2186  month = {2 mai}
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2188
2189@ARTICLE{Madec_al_DAO91,
2190  author = {G. Madec and M. Chartier and M. Cr\'{e}pon},
2191  title = {Effect of thermohaline forcing variability on deep water formation
2192   in the Northwestern Mediterranean Sea - a high resulution three-dimensional
2193   study},
2194  journal = DAO,
2195  year = {1991},
2196  volume = {15},
2197  pages = {301--332}
2198}
2199
2200@ARTICLE{Madec_al_JPO91,
2201  author = {G. Madec and M. Chartier and P. Delecluse and M. Cr\'{e}pon},
2202  title = {A three-dimensional numerical study of deep water formation in the Northwestern Mediterranean Sea .},
2203  journal = JPO,
2204  year = {1991},
2205  volume = {21},
2206  pages = {1349--1371}
2207}
2208
2209@INBOOK{Madec_Crepon_Bk91,
2210  chapter = {Thermohaline-driven deep water formation in the Northwestern Mediterranean
2211   Sea},
2212  pages = {241--265},
2213  title = {Deep convection and deep water formation in the oceans},
2214  publisher = {Elsevier Oceanographic Series, P.C. Chu and J.C. Gascard (Eds.)},
2215  year = {1991},
2216  author = {G. Madec and M. Cr\'{e}pon}
2217}
2218
2219@ARTICLE{Madec1997,
2220  author = {G. Madec and P. Delecluse},
2221  title = {The OPA/ARPEGE and OPA/LMD Global Ocean-Atmosphere Coupled Model},
2222  journal = {Int. WOCE Newsletter},
2223  year = {1997},
2224  volume = {26},
2225  pages = {12--15}
2226}
2227
2228@TECHREPORT{Madec1998,
2229  author = {G. Madec and P. Delecluse and M. Imbard and C. Levy},
2230  title = {OPA 8 Ocean General Circulation Model - Reference Manual},
2231  institution = {LODYC/IPSL Note 11},
2232  year = {1998}
2233}
2234
2235@ARTICLE{Madec_Imbard_CD96,
2236  author = {G Madec and M Imbard},
2237  title = {A global ocean mesh to overcome the north pole singularity},
2238  journal = CD,
2239  year = {1996},
2240  volume = {12},
2241  pages = {381--388}
2242}
2243
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2246  title = {Large-Scale Preconditioning of Deep-Water Formation in the Northwestern
2247   Mediterranean Sea},
2248  journal = JPO,
2249  year = {1996},
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2251  pages = {1393--1408},
2252}
2253
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2257   in a multilevel OGCM},
2258  journal = OM,
2259  year = {1988},
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2263
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2273
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2277  journal = MWR,
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2314   C. Estournel and I. Pairaud and C. Ulses},
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2326TITLE = {NEMO-ICB (v1.0): interactive icebergs in the NEMO ocean model globally configured at eddy-permitting resolution},
2327JOURNAL = {Geoscientific Model Development},
2328VOLUME = {8},
2329YEAR = {2015},
2330NUMBER = {5},
2331PAGES = {1547--1562},
2332DOI = {10.5194/gmd-8-1547-2015}
2333}
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2807  title={{The Temperature at the Ocean-air Interface}},
2808  journal=JAS,
2809  year={1967},
2810  volume={24},
2811  pages={269-273},
2812  doi = {10.1175/1520-0469(1967)024<0269:TTATOA>2.0.CO;2},
2813}
2814
2815@BOOK{Shchepetkin_McWilliams_Bk08,
2816  author = {A. F. Shchepetkin and J. C. McWilliams},
2817  title = {Handbook of Numerical Analysis, Vol. XIV: Computational Methods for the Ocean and the Atmosphere, pp 121-183},
2818  publisher = {P. G. Ciarlet, editor, R. Temam and J. Tribbia, guest eds., Elsevier Science},
2819  year = {2008},
2820  pages = {784}
2821}
2822
2823@ARTICLE{Shchepetkin_McWilliams_OM05,
2824  author = {A. F. Shchepetkin and J. C. McWilliams},
2825  title = {The regional oceanic modeling system (ROMS) - a split-explicit, free-surface,
2826   topography-following-coordinate oceanic modelr},
2827  journal = OM,
2828  year = {2005},
2829  volume = {9},  number = {4},
2830  pages = {347--404}
2831}
2832
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2834  author = {A. F. Shchepetkin and J. C. McWilliams},
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2836   model with a nonaligned vertical coordinate},
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2842}
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2854  author = {J. Siddorn and R. Furner},
2855  title = {An analytical stretching function that combines the best attributes of geopotential and terrain-following vertical coordinates},
2856  journal = OM,
2857  year = {2012},
2858  pages = {submitted},
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2862  author = {H. L. Simmons and S. R. Jayne and L. C. {St. Laurent} and A. J. Weaver},
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2920  year = {1992}
2921}
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2923@ARTICLE{Speich_al_GRL01,
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2930}
2931
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2935  journal = JPO,
2936  year = {1996},
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2939}
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2994}
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3000  journal = JGR,
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3005}
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3083  year = {2007},
3084  volume = {4},
3085  pages = {653--698}
3086}
3087
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3090  and G. Madec and J.-M. Molines and T. Penduff and L. Czeschel and C. Böning},
3091  title = {Internal and forced variability along a section between Greenland
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3095  volume = {56},
3096  pages = {568--580},
3097  doi = {10.1007/s10236-006-0069-y},
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3100@ARTICLE{Treguier1997,
3101  author = {A. M. Tr\'{e}guier and I. M. Held and V. D. Larichev},
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3107}
3108
3109@ARTICLE{Tu_Tsuang_GRL05,
3110  title={{Cool-skin simulation by a one-column ocean model}},
3111  author={{C-Y}. Tu  and {B-J}. Tsuang},
3112  journal=GRL,
3113  year={2005},
3114  volume={32},
3115  pages={L22602},
3116  doi = {10.1029/2005GL024252},
3117}
3118
3119@ARTICLE{Umlauf_Burchard_JMS03,
3120  author = {L. Umlauf and H. Burchard},
3121  title = {A generic length-scale equation for geophysical turbulence models},
3122  journal = JMS,
3123  year = {2003},
3124  volume = {61},  number = {2},
3125  pages = {235--265}
3126}
3127
3128@ARTICLE{Umlauf_Burchard_CSR05,
3129  author = {L. Umlauf and H. Burchard},
3130  title = {Second-order turbulence closure models for geophysical boundary layers. A review of recent work},
3131  journal = JMS,
3132  year = {2005},
3133  volume = {25},
3134  pages = {795--827}
3135}
3136
3137@BOOK{UNESCO1983,
3138  title = {Algorithms for computation of fundamental property of sea water},
3139  publisher = {Techn. Paper in Mar. Sci, 44, UNESCO},
3140  year = {1983},
3141  author = {UNESCO}
3142}
3143
3144@TECHREPORT{OASIS2006,
3145  author = {S. Valcke},
3146  title = {OASIS3 User Guide (prism\_2-5)},
3147  institution = {PRISM Support Initiative Report No 3, CERFACS, Toulouse, France},
3148  year = {2006},
3149  pages = {64pp}
3150}
3151
3152@TECHREPORT{Valcke_al_Rep00,
3153  author = {S. Valcke and L. Terray and A. Piacentini },
3154  title = {The OASIS Coupled User Guide Version 2.4},
3155  institution = {CERFACS},
3156  year = {2000},
3157  number = {TR/CMGC/00-10}
3158}
3159
3160@ARTICLE{Vancoppenolle_al_OM09b,
3161  author = {M. Vancoppenolle and T. Fichefet and H. Goosse},
3162  title = {Simulating the mass balance and salinity of Arctic and Antarctic sea ice. 2.
3163     Importance of sea ice salinity variations},
3164  journal = OM,
3165  year = {2009},
3166  volume = {27},
3167  pages = {54--69}
3168}
3169
3170@book{Vallis06,
3171author = {Vallis, G. K.},
3172title = {Atmospheric and Oceanic Fluid Dynamics},
3173publisher = {Cambridge University Press},
3174address = {Cambridge, U.K.},
3175year = {2006},
3176pages = {745},
3177}
3178
3179@ARTICLE{Vancoppenolle_al_OM09a,
3180  author = {M. Vancoppenolle and T. Fichefet and H. Goosse and S. Bouillon and
3181   G. Madec and M. A. Morales Maqueda},
3182  title = {Simulating the mass balance and salinity of Arctic and Antarctic
3183   sea ice. 1. Model description and validation},
3184  journal = OM,
3185  year = {2009},
3186  volume = {27},
3187  pages = {33--53},
3188  doi = {10.1016/j.ocemod.2008.10.005},
3189}
3190
3191@ARTICLE{Vialard_al_JPO01,
3192  author = {J. Vialard and C. Menkes and J.-P. Boulanger and P. Delecluse and
3193   E. Guilyardi and M.J. McPhaden and G. Madec},
3194  title = {A Model Study of Oceanic Mechanisms Affecting Equatorial Pacific
3195   Sea Surface Temperature During the 1997-98 El Niño},
3196  journal = JPO,
3197  year = {2001},
3198  volume = {31},  number = {7},
3199  pages = {1649--1675}
3200}
3201
3202@ARTICLE{Warner_al_OM05,
3203  author = {J. C. Warner and C. R. Sherwood and H. G. Arango and R. P. Signell},
3204  title = {Performance of four turbulence closure models implemented using a generic length scale method},
3205  journal = OM,
3206  year = {2005},
3207  volume = {8},
3208  pages = {81--113},
3209  doi = {10.1016/j.ocemod.2003.12.003},
3210}
3211
3212@ARTICLE{Weatherly_JMR84,
3213  author = {G. L. Weatherly},
3214  title = {An estimate of bottom frictional dissipation by Gulf Stream fluctuations},
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3216  year = {1984},
3217  volume = {42},  number = {2},
3218  pages = {289--301}
3219}
3220
3221@ARTICLE{Weaver_Eby_JPO97,
3222  author = {A. J. Weaver and M. Eby},
3223  title = {On the numerical implementation of advection schemes for use in conjuction
3224   with various mixing parameterizations in the GFDL ocean model},
3225  journal = JPO,
3226  year = {1997},
3227  volume = {27}
3228}
3229
3230@ARTICLE{Webb_al_JAOT98,
3231  author = {D. J. Webb and B. A. de Cuevas and C. S. Richmond},
3232  title = {Improved Advection Schemes for Ocean Models},
3233  journal = JAOT,
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3235  volume = {15},  number = {5},
3236  pages = {1171--1187},
3237}
3238
3239@ARTICLE{White_al_JCP09,
3240  author = {L. White and A. Adcroft and R. Hallberg},
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3242   and generalized coordinates in ocean models},
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3247}
3248
3249@ARTICLE{Wilcox_1988,
3250  author = {D. C. Wilcox},
3251  title = {Reassessment of the scale-determining equation for advanced turbulence models},
3252  journal = {AIAA journal},
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3256}
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3258@ARTICLE{Willebrand_al_PO01,
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3260   D. Killworth and C. Le Provost and Y. Jia and J.-M. Molines and A. L. New},
3261  title = {Circulation characteristics in three eddy-permitting models of the North Atlantic},
3262  journal = PO,
3263  year = {2001},
3264  volume = {48},  number = {2},
3265  pages = {123--161}
3266}
3267
3268@ARTICLE{Williams_al_DAO09,
3269  author = {P.D. Williams and E. Guilyardi and G. Madec and S. Gualdi and E. Scoccimarro},
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3272  year = {2010},
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3274  pages = {108--123},
3275  doi = {10.1016/j.dynatmoce.2009.02.001},
3276}
3277
3278@ARTICLE{Williams_al_GRL07,
3279  author = {P.D. Williams and E. Guilyardi and R. Sutton and J.M. Gregory and G. Madec},
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3285  doi = {10.1029/2007GL029275},
3286}
3287
3288@ARTICLE{Williams_al_CD06,
3289  author = {P.D. Williams and E. Guilyardi and R. Sutton and J.M. Gregory and G. Madec},
3290  title = {On the climate response of the low-latitude Pacific ocean to changes in the global freshwater cycle},
3291  journal = CD,
3292  year = {2006},
3293  volume = {27},
3294  pages = {593--611}
3295}
3296
3297@ARTICLE{Zalesak_JCP79,
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3305@ARTICLE{Zhang_Endoh_JGR92,
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3312}
3313
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