MODULE trclsm_lobster !!====================================================================== !! *** MODULE trclsm_lobster *** !! TOP : initialisation of some run parameters for LOBSTER bio-model !!====================================================================== !! History : 2.0 ! 2007-12 (C. Ethe, G. Madec) from trclsm.lobster1.h90 !!---------------------------------------------------------------------- #if defined key_lobster !!---------------------------------------------------------------------- !! 'key_lobster' : LOBSTER bio-model !!---------------------------------------------------------------------- !! trc_lsm_lobster : LOBSTER model namelist read !!---------------------------------------------------------------------- USE oce_trc ! Ocean variables USE par_trc ! TOP parameters USE trc ! TOP variables USE sms ! sms trends IMPLICIT NONE PRIVATE PUBLIC trc_lsm_lobster ! called by trclsm.F90 module !!---------------------------------------------------------------------- !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) !! $Id$ !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) !!---------------------------------------------------------------------- CONTAINS SUBROUTINE trc_lsm_lobster !!---------------------------------------------------------------------- !! *** trc_lsm_lobster *** !! !! ** Purpose : read LOBSTER namelist !! !! ** input : file 'namelist.trc.sms' containing the following !! namelist: natbio, natopt, and natdbi ("key_trc_diabio") !!---------------------------------------------------------------------- CHARACTER (len=32) :: clname !! NAMELIST/natbio/ apmin, azmin, anmin, admin, & & redf, reddom, slopet, toptp, psinut, akno3, aknh4, rcchl, & & rgamma, toptgz, tmaxgz, rgz, & & rppz, taus, aks, filmax, rpnaz, rdnaz, eggzoo, tauzn, & & tmmaxp, tmminp, tmmaxz, tmminz, anumin, afdmin, taudn, & & vsed, tmumax, aki, tmaxr, tminr, taunn, taudomn, xhr, & & sedlam, sedlostpoc, & & fphylab, fzoolab, fdetlab, fdbod NAMELIST/natopt/ xkg0, xkr0, xkgp, xkrp, xlg, xlr, rpig #if defined key_trc_diabio INTEGER :: ji NAMELIST/natdbi/ctrbio,ctrbil,ctrbiu,nwritebio #endif !!---------------------------------------------------------------------- IF(lwp) WRITE(numout,*) IF(lwp) WRITE(numout,*) ' trc_lsm_lobster : read LOBSTER namelists' IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~~' ! ! Open the namelist file ! ! ---------------------- clname ='namelist.trc.sms' CALL ctlopn( numnat, clname, 'OLD', 'FORMATTED', 'SEQUENTIAL', & & 1, numout, .FALSE., 1 ) ! ! natbio : biological parameters ! ! ------------------------------ apmin = 0. ! default values azmin = 0. anmin = 0. admin = 0. redf = 0. reddom = 0. slopet = 0. toptp = 0. psinut = 0. akno3 = 0. aknh4 = 0. rcchl = 0. rgamma= 0. toptgz= 0. tmaxgz= 0. rgz = 0. rppz = 0. taus = 0. aks = 0. filmax= 0. rpnaz = 0. rdnaz = 0. eggzoo= 0. tauzn = 0. tmmaxp= 0. tmminp= 0. tmmaxz= 0. tmminz= 0. anumin= 0. afdmin= 0. taudn = 0. vsed = 0. tmumax= 0. aki = 0. tmaxr = 1./( 4.*rday)*0. tminr = 1./(24.*30.*rday)*0. xhr=0. sedlam=0. sedlostpoc=0. taudomn = 0. taunn = 0. fphylab = 0. fzoolab = 0. fdetlab = 0. fdbod = 0. REWIND( numnat ) ! read natbio READ ( numnat, natbio ) IF(lwp) THEN WRITE(numout,*) ' Namelist natbio' WRITE(numout,*) ' minimum phytoplancton concentration apmin =', apmin WRITE(numout,*) ' minimum zooplancton concentration azmin =', azmin WRITE(numout,*) ' minimum nutrients concentration anmin =', anmin WRITE(numout,*) ' minimum detritus concentration admin =', admin WRITE(numout,*) ' redfield ratio c:n redf =', redf WRITE(numout,*) ' van t hoff coefficient slopet =', slopet WRITE(numout,*) ' optimal photosynthesis temperature toptp =', toptp WRITE(numout,*) ' inhibition of no3 uptake by nh4 psinut =', psinut WRITE(numout,*) ' half-saturation nutrient for no3 uptake akno3 =', akno3 WRITE(numout,*) ' half-saturation nutrient for nh4 uptake aknh4 =', aknh4 WRITE(numout,*) ' carbone/chlorophyl ratio rcchl =', rcchl WRITE(numout,*) ' phytoplankton exudation fraction rgamma =', rgamma WRITE(numout,*) ' optimal temperature for zoo growth toptgz =', toptgz WRITE(numout,*) ' maximal temperature for zoo growth tmaxgz =', tmaxgz WRITE(numout,*) ' widtht of zoo temperature FUNCTION rgz =', rgz WRITE(numout,*) ' zoo preference for phyto rppz =', rppz WRITE(numout,*) ' maximal zoo grazing rate taus =', 86400 * taus, ' d' WRITE(numout,*) ' half saturation constant for zoo food aks =', aks WRITE(numout,*) ' maximal mass clearance rate for zoo filmax =', filmax WRITE(numout,*) ' non-assimilated phyto by zoo rpnaz =', rpnaz WRITE(numout,*) ' non-assimilated detritus by zoo rdnaz =', rdnaz WRITE(numout,*) ' minimum for zoo concentration eggzoo =', eggzoo WRITE(numout,*) ' zoo specific excretion rate tauzn =', 86400 * tauzn WRITE(numout,*) ' maximal phyto mortality rate tmmaxp =', 86400 * tmmaxp WRITE(numout,*) ' minimal phyto mortality rate tmminp =', 86400 * tmminp WRITE(numout,*) ' maximal zoo mortality rate tmmaxz =', 86400 * tmmaxz WRITE(numout,*) ' minimal zoo mortality rate tmminz =', 86400 * tmminz WRITE(numout,*) ' nutrient threshold for phyto mort anumin =', anumin WRITE(numout,*) ' food threshold for zoo mort afdmin =', afdmin WRITE(numout,*) ' detrital breakdown rate taudn =', 86400 * taudn , ' d' WRITE(numout,*) ' detritus sedimentation speed vsed =', 86400 * vsed , ' d' WRITE(numout,*) ' phyto max growth rate tmumax =', 86400 * tmumax, ' d' WRITE(numout,*) ' light hlaf saturation constant aki =', aki WRITE(numout,*) ' maximum damping for d z or p tmaxr =', tmaxr WRITE(numout,*) ' damping-remineralisation rate tminr =', tminr WRITE(numout,*) ' nitrification rate taunn =', taunn WRITE(numout,*) ' dom remineralisation rate taudomn =', taudomn WRITE(numout,*) ' coeff for martin''s remineralistion xhr =', xhr WRITE(numout,*) ' time coeff of POC in sediments sedlam =', sedlam WRITE(numout,*) ' Sediment geol loss for POC sedlostpoc=', sedlostpoc WRITE(numout,*) ' NH4 fraction of phytoplankton exsudation fphylab =', fphylab WRITE(numout,*) ' NH4 fraction of zooplankton excretion fzoolab =', fzoolab WRITE(numout,*) ' NH4 fraction of detritus dissolution fdetlab =', fdetlab WRITE(numout,*) ' Zooplankton mortality fraction that goes to detritus fdbod =', fdbod ENDIF ! ! natopt : optical parameters ! ! --------------------------- xkg0 = 0. ! default values xkr0 = 0. xkgp = 0. xkrp = 0. xlg = 0. xlr = 0. rpig = 0. REWIND( numnat ) ! read natopt READ ( numnat, natopt ) IF(lwp) THEN ! control print WRITE(numout,*) WRITE(numout,*) ' Namelist natopt' WRITE(numout,*) ' green water absorption coeff xkg0 = ', xkg0 WRITE(numout,*) ' red water absorption coeff xkr0 = ', xkr0 WRITE(numout,*) ' pigment red absorption coeff xkrp = ', xkrp WRITE(numout,*) ' pigment green absorption coeff xkgp = ', xkgp WRITE(numout,*) ' green chl exposant xlg = ', xlg WRITE(numout,*) ' red chl exposant xlr = ', xlr WRITE(numout,*) ' chla/chla+phea ratio rpig = ', rpig ENDIF #if defined key_trc_diabio ! ! natdbi : bio diagnostics ! ! ------------------------ nwritebio = 10 ! default values DO ji = 1, jpdiabio IF( ji < 10 ) THEN ; WRITE (ctrbio(ji),'("BIO_",I1)') ji ! short name ELSEIF (ji < 100 ) THEN ; WRITE (ctrbio(ji),'("BIO_",I2)') ji ELSE ; WRITE (ctrbio(ji),'("BIO_",I3)') ji ENDIF WRITE(ctrbil(ji),'("BIOLOGICAL TREND NUMBER ",I2)') ji ! long name ctrbiu(ji) = 'mmoleN/m3/s ' ! units END DO REWIND( numnat ) ! read natdbi READ ( numnat, natdbi ) IF(lwp) THEN WRITE(numout,*) WRITE(numout,*) ' Namelist natdbi' WRITE(numout,*) ' frequency of outputs for biological outputs nwritebio = ', nwritebio DO ji = 1, jpdiabio WRITE(numout,*) ' name of biological trend No :',ji,' : ',ctrbio(ji), ctrbil(ji), ' in ', ctrbiu(ji) END DO END IF #endif ! END SUBROUTINE trc_lsm_lobster #else !!---------------------------------------------------------------------- !! Dummy module : No LOBSTER !!---------------------------------------------------------------------- CONTAINS SUBROUTINE trc_lsm_lobster ! Empty routine END SUBROUTINE trc_lsm_lobster #endif !!====================================================================== END MODULE trclsm_lobster