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nemogcm.F90 in branches/2012/dev_r3342_MERCATOR7_SST/NEMOGCM/NEMO/OPA_SRC – NEMO

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source: branches/2012/dev_r3342_MERCATOR7_SST/NEMOGCM/NEMO/OPA_SRC/nemogcm.F90 @ 3572

Last change on this file since 3572 was 3572, checked in by cbricaud, 11 years ago
merge dev_r3342_MERCATOR7_SST with trunk: rev3342 to rev3555.
Property svn:keywords set to `Id`
File size: 36.0 KB

Line
1	MODULE nemogcm
2	!!======================================================================
3	!! * MODULE nemogcm *
4	!! Ocean system : NEMO GCM (ocean dynamics, on-line tracers, biochemistry and sea-ice)
5	!!======================================================================
6	!! History : OPA ! 1990-10 (C. Levy, G. Madec) Original code
7	!! 7.0 ! 1991-11 (M. Imbard, C. Levy, G. Madec)
8	!! 7.1 ! 1993-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar,
9	!! P. Delecluse, C. Perigaud, G. Caniaux, B. Colot, C. Maes) release 7.1
10	!! - ! 1992-06 (L.Terray) coupling implementation
11	!! - ! 1993-11 (M.A. Filiberti) IGLOO sea-ice
12	!! 8.0 ! 1996-03 (M. Imbard, C. Levy, G. Madec, O. Marti, M. Guyon, A. Lazar,
13	!! P. Delecluse, L.Terray, M.A. Filiberti, J. Vialar, A.M. Treguier, M. Levy) release 8.0
14	!! 8.1 ! 1997-06 (M. Imbard, G. Madec)
15	!! 8.2 ! 1999-11 (M. Imbard, H. Goosse) LIM sea-ice model
16	!! ! 1999-12 (V. Thierry, A-M. Treguier, M. Imbard, M-A. Foujols) OPEN-MP
17	!! ! 2000-07 (J-M Molines, M. Imbard) Open Boundary Conditions (CLIPPER)
18	!! NEMO 1.0 ! 2002-08 (G. Madec) F90: Free form and modules
19	!! - ! 2004-06 (R. Redler, NEC CCRLE, Germany) add OASIS[3/4] coupled interfaces
20	!! - ! 2004-08 (C. Talandier) New trends organization
21	!! - ! 2005-06 (C. Ethe) Add the 1D configuration possibility
22	!! - ! 2005-11 (V. Garnier) Surface pressure gradient organization
23	!! - ! 2006-03 (L. Debreu, C. Mazauric) Agrif implementation
24	!! - ! 2006-04 (G. Madec, R. Benshila) Step reorganization
25	!! - ! 2007-07 (J. Chanut, A. Sellar) Unstructured open boundaries (BDY)
26	!! 3.2 ! 2009-08 (S. Masson) open/write in the listing file in mpp
27	!! 3.3 ! 2010-05 (K. Mogensen, A. Weaver, M. Martin, D. Lea) Assimilation interface
28	!! - ! 2010-10 (C. Ethe, G. Madec) reorganisation of initialisation phase
29	!! 3.3.1! 2011-01 (A. R. Porter, STFC Daresbury) dynamical allocation
30	!! 3.4 ! 2011-11 (C. Harris) decomposition changes for running with CICE
31	!!----------------------------------------------------------------------
32
33	!!----------------------------------------------------------------------
34	!! nemo_gcm : solve ocean dynamics, tracer, biogeochemistry and/or sea-ice
35	!! nemo_init : initialization of the NEMO system
36	!! nemo_ctl : initialisation of the contol print
37	!! nemo_closefile : close remaining open files
38	!! nemo_alloc : dynamical allocation
39	!! nemo_partition : calculate MPP domain decomposition
40	!! factorise : calculate the factors of the no. of MPI processes
41	!!----------------------------------------------------------------------
42	USE step_oce ! module used in the ocean time stepping module
43	USE sbc_oce ! surface boundary condition: ocean
44	USE cla ! cross land advection (tra_cla routine)
45	USE domcfg ! domain configuration (dom_cfg routine)
46	USE mppini ! shared/distributed memory setting (mpp_init routine)
47	USE domain ! domain initialization (dom_init routine)
48	USE obcini ! open boundary cond. initialization (obc_ini routine)
49	USE bdyini ! open boundary cond. initialization (bdy_init routine)
50	USE bdydta ! open boundary cond. initialization (bdy_dta_init routine)
51	USE bdytides ! open boundary cond. initialization (tide_init routine)
52	USE istate ! initial state setting (istate_init routine)
53	USE ldfdyn ! lateral viscosity setting (ldfdyn_init routine)
54	USE ldftra ! lateral diffusivity setting (ldftra_init routine)
55	USE zdfini ! vertical physics setting (zdf_init routine)
56	USE phycst ! physical constant (par_cst routine)
57	USE trdmod ! momentum/tracers trends (trd_mod_init routine)
58	USE asmtrj ! writing out state trajectory
59	USE diaptr ! poleward transports (dia_ptr_init routine)
60	USE diadct ! sections transports (dia_dct_init routine)
61	USE diaobs ! Observation diagnostics (dia_obs_init routine)
62	USE step ! NEMO time-stepping (stp routine)
63	#if defined key_oasis3
64	USE cpl_oasis3 ! OASIS3 coupling
65	#elif defined key_oasis4
66	USE cpl_oasis4 ! OASIS4 coupling (not working)
67	#endif
68	USE c1d ! 1D configuration
69	USE step_c1d ! Time stepping loop for the 1D configuration
70	#if defined key_top
71	USE trcini ! passive tracer initialisation
72	#endif
73	USE lib_mpp ! distributed memory computing
74	#if defined key_iomput
75	USE mod_ioclient
76	#endif
77
78	IMPLICIT NONE
79	PRIVATE
80
81	PUBLIC nemo_gcm ! called by model.F90
82	PUBLIC nemo_init ! needed by AGRIF
83
84	CHARACTER(lc) :: cform_aaa="( /, 'AAAAAAAA', / ) " ! flag for output listing
85
86	!!----------------------------------------------------------------------
87	!! NEMO/OPA 4.0 , NEMO Consortium (2011)
88	!! $Id$
89	!! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
90	!!----------------------------------------------------------------------
91	CONTAINS
92
93	SUBROUTINE nemo_gcm
94	!!----------------------------------------------------------------------
95	!! * ROUTINE nemo_gcm *
96	!!
97	!! ** Purpose : NEMO solves the primitive equations on an orthogonal
98	!! curvilinear mesh on the sphere.
99	!!
100	!! ** Method : - model general initialization
101	!! - launch the time-stepping (stp routine)
102	!! - finalize the run by closing files and communications
103	!!
104	!! References : Madec, Delecluse, Imbard, and Levy, 1997: internal report, IPSL.
105	!! Madec, 2008, internal report, IPSL.
106	!!----------------------------------------------------------------------
107	INTEGER :: istp ! time step index
108	!!----------------------------------------------------------------------
109	!
110	#if defined key_agrif
111	CALL Agrif_Init_Grids() ! AGRIF: set the meshes
112	#endif
113
114	! !-----------------------!
115	CALL nemo_init !== Initialisations ==!
116	! !-----------------------!
117	#if defined key_agrif
118	CALL Agrif_Declare_Var ! AGRIF: set the meshes
119	# if defined key_top
120	CALL Agrif_Declare_Var_Top ! AGRIF: set the meshes
121	# endif
122	#endif
123	! check that all process are still there... If some process have an error,
124	! they will never enter in step and other processes will wait until the end of the cpu time!
125	IF( lk_mpp ) CALL mpp_max( nstop )
126
127	IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA
128
129	! !-----------------------!
130	! !== time stepping ==!
131	! !-----------------------!
132	istp = nit000
133	#if defined key_c1d
134	DO WHILE ( istp <= nitend .AND. nstop == 0 )
135	CALL stp_c1d( istp )
136	istp = istp + 1
137	END DO
138	#else
139	IF( lk_asminc ) THEN
140	IF( ln_bkgwri ) CALL asm_bkg_wri( nit000 - 1 ) ! Output background fields
141	IF( ln_trjwri ) CALL asm_trj_wri( nit000 - 1 ) ! Output trajectory fields
142	IF( ln_asmdin ) THEN ! Direct initialization
143	IF( ln_trainc ) CALL tra_asm_inc( nit000 - 1 ) ! Tracers
144	IF( ln_dyninc ) THEN
145	CALL dyn_asm_inc( nit000 - 1 ) ! Dynamics
146	IF ( ln_asmdin ) CALL ssh_wzv ( nit000 - 1 ) ! update vertical velocity
147	ENDIF
148	IF( ln_sshinc ) CALL ssh_asm_inc( nit000 - 1 ) ! SSH
149	ENDIF
150	ENDIF
151
152	DO WHILE ( istp <= nitend .AND. nstop == 0 )
153	#if defined key_agrif
154	CALL Agrif_Step( stp ) ! AGRIF: time stepping
155	#else
156	CALL stp( istp ) ! standard time stepping
157	#endif
158	istp = istp + 1
159	IF( lk_mpp ) CALL mpp_max( nstop )
160	END DO
161	#endif
162
163	IF( lk_diaobs ) CALL dia_obs_wri
164
165	! !------------------------!
166	! !== finalize the run ==!
167	! !------------------------!
168	IF(lwp) WRITE(numout,cform_aaa) ! Flag AAAAAAA
169	!
170	IF( nstop /= 0 .AND. lwp ) THEN ! error print
171	WRITE(numout,cform_err)
172	WRITE(numout,*) nstop, ' error have been found'
173	ENDIF
174	!
175	#if defined key_agrif
176	CALL Agrif_ParentGrid_To_ChildGrid()
177	IF( lk_diaobs ) CALL dia_obs_wri
178	IF( nn_timing == 1 ) CALL timing_finalize
179	CALL Agrif_ChildGrid_To_ParentGrid()
180	#endif
181	IF( nn_timing == 1 ) CALL timing_finalize
182	!
183	CALL nemo_closefile
184	#if defined key_oasis3 \|\| defined key_oasis4
185	CALL cpl_prism_finalize ! end coupling and mpp communications with OASIS
186	#else
187	IF( lk_mpp ) CALL mppstop ! end mpp communications
188	#endif
189	!
190	END SUBROUTINE nemo_gcm
191
192
193	SUBROUTINE nemo_init
194	!!----------------------------------------------------------------------
195	!! * ROUTINE nemo_init *
196	!!
197	!! ** Purpose : initialization of the NEMO GCM
198	!!----------------------------------------------------------------------
199	INTEGER :: ji ! dummy loop indices
200	INTEGER :: ilocal_comm ! local integer
201	CHARACTER(len=80), DIMENSION(16) :: cltxt
202	!!
203	NAMELIST/namctl/ ln_ctl , nn_print, nn_ictls, nn_ictle, &
204	& nn_isplt, nn_jsplt, nn_jctls, nn_jctle, &
205	& nn_bench, nn_timing
206	!!----------------------------------------------------------------------
207	!
208	cltxt = ''
209	!
210	! ! open Namelist file
211	CALL ctl_opn( numnam, 'namelist', 'OLD', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE. )
212	!
213	READ( numnam, namctl ) ! Namelist namctl : Control prints & Benchmark
214	!
215	! !--------------------------------------------!
216	! ! set communicator & select the local node !
217	! !--------------------------------------------!
218	#if defined key_iomput
219	IF( Agrif_Root() ) THEN
220	# if defined key_oasis3 \|\| defined key_oasis4
221	CALL cpl_prism_init( ilocal_comm ) ! nemo local communicator given by oasis
222	# endif
223	CALL init_ioclient( ilocal_comm ) ! exchange io_server nemo local communicator with the io_server
224	ENDIF
225	narea = mynode( cltxt, numnam, nstop, ilocal_comm ) ! Nodes selection
226	#else
227	# if defined key_oasis3 \|\| defined key_oasis4
228	IF( Agrif_Root() ) THEN
229	CALL cpl_prism_init( ilocal_comm ) ! nemo local communicator given by oasis
230	ENDIF
231	narea = mynode( cltxt, numnam, nstop, ilocal_comm ) ! Nodes selection (control print return in cltxt)
232	# else
233	ilocal_comm = 0
234	narea = mynode( cltxt, numnam, nstop ) ! Nodes selection (control print return in cltxt)
235	# endif
236	#endif
237	narea = narea + 1 ! mynode return the rank of proc (0 --> jpnij -1 )
238
239	lwp = (narea == 1) .OR. ln_ctl ! control of all listing output print
240
241	! If dimensions of processor grid weren't specified in the namelist file
242	! then we calculate them here now that we have our communicator size
243	IF( (jpni < 1) .OR. (jpnj < 1) )THEN
244	#if defined key_mpp_mpi
245	IF( Agrif_Root() ) CALL nemo_partition(mppsize)
246	#else
247	jpni = 1
248	jpnj = 1
249	jpnij = jpni*jpnj
250	#endif
251	END IF
252
253	! Calculate domain dimensions given calculated jpni and jpnj
254	! This used to be done in par_oce.F90 when they were parameters rather
255	! than variables
256	IF( Agrif_Root() ) THEN
257	jpi = ( jpiglo-2jpreci + (jpni-1) ) / jpni + 2jpreci ! first dim.
258	#if defined key_nemocice_decomp
259	jpj = ( jpjglo+1-2jprecj + (jpnj-1) ) / jpnj + 2jprecj ! second dim.
260	#else
261	jpj = ( jpjglo-2jprecj + (jpnj-1) ) / jpnj + 2jprecj ! second dim.
262	#endif
263	jpk = jpkdta ! third dim
264	jpim1 = jpi-1 ! inner domain indices
265	jpjm1 = jpj-1 ! " "
266	jpkm1 = jpk-1 ! " "
267	jpij = jpi*jpj ! jpi x j
268	ENDIF
269
270	IF(lwp) THEN ! open listing units
271	!
272	CALL ctl_opn( numout, 'ocean.output', 'REPLACE', 'FORMATTED', 'SEQUENTIAL', -1, 6, .FALSE., narea )
273	!
274	WRITE(numout,*)
275	WRITE(numout,*) ' CNRS - NERC - Met OFFICE - MERCATOR-ocean - INGV - CMCC'
276	WRITE(numout,*) ' NEMO team'
277	WRITE(numout,*) ' Ocean General Circulation Model'
278	WRITE(numout,*) ' version 3.4 (2011) '
279	WRITE(numout,*)
280	WRITE(numout,*)
281	DO ji = 1, SIZE(cltxt)
282	IF( TRIM(cltxt(ji)) /= '' ) WRITE(numout,*) cltxt(ji) ! control print of mynode
283	END DO
284	WRITE(numout,cform_aaa) ! Flag AAAAAAA
285	!
286	ENDIF
287
288	! Now we know the dimensions of the grid and numout has been set we can
289	! allocate arrays
290	CALL nemo_alloc()
291
292	! !-------------------------------!
293	! ! NEMO general initialization !
294	! !-------------------------------!
295
296	CALL nemo_ctl ! Control prints & Benchmark
297
298	! ! Domain decomposition
299	IF( jpni*jpnj == jpnij ) THEN ; CALL mpp_init ! standard cutting out
300	ELSE ; CALL mpp_init2 ! eliminate land processors
301	ENDIF
302	!
303	IF( nn_timing == 1 ) CALL timing_init
304	!
305	! ! General initialization
306	CALL phy_cst ! Physical constants
307	CALL eos_init ! Equation of state
308	CALL dom_cfg ! Domain configuration
309	CALL dom_init ! Domain
310
311	IF( ln_nnogather ) CALL nemo_northcomms ! Initialise the northfold neighbour lists (must be done after the masks are defined)
312
313	IF( ln_ctl ) CALL prt_ctl_init ! Print control
314
315	IF( lk_obc ) CALL obc_init ! Open boundaries
316	IF( lk_bdy ) CALL bdy_init ! Open boundaries initialisation
317	IF( lk_bdy ) CALL bdy_dta_init ! Open boundaries initialisation of external data arrays
318	IF( lk_bdy ) CALL tide_init ! Open boundaries initialisation of tidal harmonic forcing
319
320	CALL flush(numout)
321	CALL dyn_nept_init ! simplified form of Neptune effect
322	CALL flush(numout)
323
324	CALL istate_init ! ocean initial state (Dynamics and tracers)
325
326	! ! Ocean physics
327	CALL sbc_init ! Forcings : surface module
328	! ! Vertical physics
329	CALL zdf_init ! namelist read
330	CALL zdf_bfr_init ! bottom friction
331	IF( lk_zdfric ) CALL zdf_ric_init ! Richardson number dependent Kz
332	IF( lk_zdftke ) CALL zdf_tke_init ! TKE closure scheme
333	IF( lk_zdfgls ) CALL zdf_gls_init ! GLS closure scheme
334	IF( lk_zdfkpp ) CALL zdf_kpp_init ! KPP closure scheme
335	IF( lk_zdftmx ) CALL zdf_tmx_init ! tidal vertical mixing
336	IF( lk_zdfddm .AND. .NOT. lk_zdfkpp ) &
337	& CALL zdf_ddm_init ! double diffusive mixing
338	! ! Lateral physics
339	CALL ldf_tra_init ! Lateral ocean tracer physics
340	CALL ldf_dyn_init ! Lateral ocean momentum physics
341	IF( lk_ldfslp ) CALL ldf_slp_init ! slope of lateral mixing
342
343	! ! Active tracers
344	CALL tra_qsr_init ! penetrative solar radiation qsr
345	CALL tra_bbc_init ! bottom heat flux
346	IF( lk_trabbl ) CALL tra_bbl_init ! advective (and/or diffusive) bottom boundary layer scheme
347	IF( ln_tradmp ) CALL tra_dmp_init ! internal damping trends
348	CALL tra_adv_init ! horizontal & vertical advection
349	CALL tra_ldf_init ! lateral mixing
350	CALL tra_zdf_init ! vertical mixing and after tracer fields
351
352	! ! Dynamics
353	CALL dyn_adv_init ! advection (vector or flux form)
354	CALL dyn_vor_init ! vorticity term including Coriolis
355	CALL dyn_ldf_init ! lateral mixing
356	CALL dyn_hpg_init ! horizontal gradient of Hydrostatic pressure
357	CALL dyn_zdf_init ! vertical diffusion
358	CALL dyn_spg_init ! surface pressure gradient
359
360	! ! Misc. options
361	IF( nn_cla == 1 ) CALL cla_init ! Cross Land Advection
362
363	#if defined key_top
364	! ! Passive tracers
365	CALL trc_init
366	#endif
367	! ! Diagnostics
368	IF( lk_floats ) CALL flo_init ! drifting Floats
369	CALL iom_init ! iom_put initialization
370	IF( lk_diaar5 ) CALL dia_ar5_init ! ar5 diag
371	CALL dia_ptr_init ! Poleward TRansports initialization
372	IF( lk_diadct ) CALL dia_dct_init ! Sections tranports
373	CALL dia_hsb_init ! heat content, salt content and volume budgets
374	CALL trd_mod_init ! Mixed-layer/Vorticity/Integral constraints trends
375	IF( lk_diaobs ) THEN ! Observation & model comparison
376	CALL dia_obs_init ! Initialize observational data
377	CALL dia_obs( nit000 - 1 ) ! Observation operator for restart
378	ENDIF
379	! ! Assimilation increments
380	IF( lk_asminc ) CALL asm_inc_init ! Initialize assimilation increments
381	IF(lwp) WRITE(numout,*) 'Euler time step switch is ', neuler
382	!
383	END SUBROUTINE nemo_init
384
385
386	SUBROUTINE nemo_ctl
387	!!----------------------------------------------------------------------
388	!! * ROUTINE nemo_ctl *
389	!!
390	!! ** Purpose : control print setting
391	!!
392	!! ** Method : - print namctl information and check some consistencies
393	!!----------------------------------------------------------------------
394	!
395	IF(lwp) THEN ! control print
396	WRITE(numout,*)
397	WRITE(numout,*) 'nemo_ctl: Control prints & Benchmark'
398	WRITE(numout,*) '~~~~~~~ '
399	WRITE(numout,*) ' Namelist namctl'
400	WRITE(numout,*) ' run control (for debugging) ln_ctl = ', ln_ctl
401	WRITE(numout,*) ' level of print nn_print = ', nn_print
402	WRITE(numout,*) ' Start i indice for SUM control nn_ictls = ', nn_ictls
403	WRITE(numout,*) ' End i indice for SUM control nn_ictle = ', nn_ictle
404	WRITE(numout,*) ' Start j indice for SUM control nn_jctls = ', nn_jctls
405	WRITE(numout,*) ' End j indice for SUM control nn_jctle = ', nn_jctle
406	WRITE(numout,*) ' number of proc. following i nn_isplt = ', nn_isplt
407	WRITE(numout,*) ' number of proc. following j nn_jsplt = ', nn_jsplt
408	WRITE(numout,*) ' benchmark parameter (0/1) nn_bench = ', nn_bench
409	WRITE(numout,*) ' timing activated (0/1) nn_timing = ', nn_timing
410	ENDIF
411	!
412	nprint = nn_print ! convert DOCTOR namelist names into OLD names
413	nictls = nn_ictls
414	nictle = nn_ictle
415	njctls = nn_jctls
416	njctle = nn_jctle
417	isplt = nn_isplt
418	jsplt = nn_jsplt
419	nbench = nn_bench
420	! ! Parameter control
421	!
422	IF( ln_ctl ) THEN ! sub-domain area indices for the control prints
423	IF( lk_mpp .AND. jpnij > 1 ) THEN
424	isplt = jpni ; jsplt = jpnj ; ijsplt = jpni*jpnj ! the domain is forced to the real split domain
425	ELSE
426	IF( isplt == 1 .AND. jsplt == 1 ) THEN
427	CALL ctl_warn( ' - isplt & jsplt are equal to 1', &
428	& ' - the print control will be done over the whole domain' )
429	ENDIF
430	ijsplt = isplt * jsplt ! total number of processors ijsplt
431	ENDIF
432	IF(lwp) WRITE(numout,*)' - The total number of processors over which the'
433	IF(lwp) WRITE(numout,*)' print control will be done is ijsplt : ', ijsplt
434	!
435	! ! indices used for the SUM control
436	IF( nictls+nictle+njctls+njctle == 0 ) THEN ! print control done over the default area
437	lsp_area = .FALSE.
438	ELSE ! print control done over a specific area
439	lsp_area = .TRUE.
440	IF( nictls < 1 .OR. nictls > jpiglo ) THEN
441	CALL ctl_warn( ' - nictls must be 1<=nictls>=jpiglo, it is forced to 1' )
442	nictls = 1
443	ENDIF
444	IF( nictle < 1 .OR. nictle > jpiglo ) THEN
445	CALL ctl_warn( ' - nictle must be 1<=nictle>=jpiglo, it is forced to jpiglo' )
446	nictle = jpiglo
447	ENDIF
448	IF( njctls < 1 .OR. njctls > jpjglo ) THEN
449	CALL ctl_warn( ' - njctls must be 1<=njctls>=jpjglo, it is forced to 1' )
450	njctls = 1
451	ENDIF
452	IF( njctle < 1 .OR. njctle > jpjglo ) THEN
453	CALL ctl_warn( ' - njctle must be 1<=njctle>=jpjglo, it is forced to jpjglo' )
454	njctle = jpjglo
455	ENDIF
456	ENDIF
457	ENDIF
458	!
459	IF( nbench == 1 ) THEN ! Benchmark
460	SELECT CASE ( cp_cfg )
461	CASE ( 'gyre' ) ; CALL ctl_warn( ' The Benchmark is activated ' )
462	CASE DEFAULT ; CALL ctl_stop( ' The Benchmark is based on the GYRE configuration:', &
463	& ' key_gyre must be used or set nbench = 0' )
464	END SELECT
465	ENDIF
466	!
467	IF( lk_c1d .AND. .NOT.lk_iomput ) CALL ctl_stop( 'nemo_ctl: The 1D configuration must be used ', &
468	& 'with the IOM Input/Output manager. ' , &
469	& 'Compile with key_iomput enabled' )
470	!
471	END SUBROUTINE nemo_ctl
472
473
474	SUBROUTINE nemo_closefile
475	!!----------------------------------------------------------------------
476	!! * ROUTINE nemo_closefile *
477	!!
478	!! ** Purpose : Close the files
479	!!----------------------------------------------------------------------
480	!
481	IF( lk_mpp ) CALL mppsync
482	!
483	CALL iom_close ! close all input/output files managed by iom_*
484	!
485	IF( numstp /= -1 ) CLOSE( numstp ) ! time-step file
486	IF( numsol /= -1 ) CLOSE( numsol ) ! solver file
487	IF( numnam /= -1 ) CLOSE( numnam ) ! oce namelist
488	IF( numnam_ice /= -1 ) CLOSE( numnam_ice ) ! ice namelist
489	IF( numevo_ice /= -1 ) CLOSE( numevo_ice ) ! ice variables (temp. evolution)
490	IF( numout /= 6 ) CLOSE( numout ) ! standard model output file
491	IF( numdct_vol /= -1 ) CLOSE( numdct_vol ) ! volume transports
492	IF( numdct_heat /= -1 ) CLOSE( numdct_heat ) ! heat transports
493	IF( numdct_salt /= -1 ) CLOSE( numdct_salt ) ! salt transports
494
495	!
496	numout = 6 ! redefine numout in case it is used after this point...
497	!
498	END SUBROUTINE nemo_closefile
499
500
501	SUBROUTINE nemo_alloc
502	!!----------------------------------------------------------------------
503	!! * ROUTINE nemo_alloc *
504	!!
505	!! ** Purpose : Allocate all the dynamic arrays of the OPA modules
506	!!
507	!! ** Method :
508	!!----------------------------------------------------------------------
509	USE diawri , ONLY: dia_wri_alloc
510	USE dom_oce , ONLY: dom_oce_alloc
511	USE ldfdyn_oce, ONLY: ldfdyn_oce_alloc
512	USE ldftra_oce, ONLY: ldftra_oce_alloc
513	USE trc_oce , ONLY: trc_oce_alloc
514	!
515	INTEGER :: ierr
516	!!----------------------------------------------------------------------
517	!
518	ierr = oce_alloc () ! ocean
519	ierr = ierr + dia_wri_alloc ()
520	ierr = ierr + dom_oce_alloc () ! ocean domain
521	ierr = ierr + ldfdyn_oce_alloc() ! ocean lateral physics : dynamics
522	ierr = ierr + ldftra_oce_alloc() ! ocean lateral physics : tracers
523	ierr = ierr + zdf_oce_alloc () ! ocean vertical physics
524	!
525	ierr = ierr + lib_mpp_alloc (numout) ! mpp exchanges
526	ierr = ierr + trc_oce_alloc () ! shared TRC / TRA arrays
527	!
528	IF( lk_mpp ) CALL mpp_sum( ierr )
529	IF( ierr /= 0 ) CALL ctl_stop( 'STOP', 'nemo_alloc : unable to allocate standard ocean arrays' )
530	!
531	END SUBROUTINE nemo_alloc
532
533
534	SUBROUTINE nemo_partition( num_pes )
535	!!----------------------------------------------------------------------
536	!! * ROUTINE nemo_partition *
537	!!
538	!! ** Purpose :
539	!!
540	!! ** Method :
541	!!----------------------------------------------------------------------
542	INTEGER, INTENT(in) :: num_pes ! The number of MPI processes we have
543	!
544	INTEGER, PARAMETER :: nfactmax = 20
545	INTEGER :: nfact ! The no. of factors returned
546	INTEGER :: ierr ! Error flag
547	INTEGER :: ji
548	INTEGER :: idiff, mindiff, imin ! For choosing pair of factors that are closest in value
549	INTEGER, DIMENSION(nfactmax) :: ifact ! Array of factors
550	!!----------------------------------------------------------------------
551
552	ierr = 0
553
554	CALL factorise( ifact, nfactmax, nfact, num_pes, ierr )
555
556	IF( nfact <= 1 ) THEN
557	WRITE (numout, *) 'WARNING: factorisation of number of PEs failed'
558	WRITE (numout, *) ' : using grid of ',num_pes,' x 1'
559	jpnj = 1
560	jpni = num_pes
561	ELSE
562	! Search through factors for the pair that are closest in value
563	mindiff = 1000000
564	imin = 1
565	DO ji = 1, nfact-1, 2
566	idiff = ABS( ifact(ji) - ifact(ji+1) )
567	IF( idiff < mindiff ) THEN
568	mindiff = idiff
569	imin = ji
570	ENDIF
571	END DO
572	jpnj = ifact(imin)
573	jpni = ifact(imin + 1)
574	ENDIF
575	!
576	jpnij = jpni*jpnj
577	!
578	END SUBROUTINE nemo_partition
579
580
581	SUBROUTINE factorise( kfax, kmaxfax, knfax, kn, kerr )
582	!!----------------------------------------------------------------------
583	!! * ROUTINE factorise *
584	!!
585	!! ** Purpose : return the prime factors of n.
586	!! knfax factors are returned in array kfax which is of
587	!! maximum dimension kmaxfax.
588	!! ** Method :
589	!!----------------------------------------------------------------------
590	INTEGER , INTENT(in ) :: kn, kmaxfax
591	INTEGER , INTENT( out) :: kerr, knfax
592	INTEGER, DIMENSION(kmaxfax), INTENT( out) :: kfax
593	!
594	INTEGER :: ifac, jl, inu
595	INTEGER, PARAMETER :: ntest = 14
596	INTEGER :: ilfax(ntest)
597
598	! lfax contains the set of allowed factors.
599	data (ilfax(jl),jl=1,ntest) / 16384, 8192, 4096, 2048, 1024, 512, 256, &
600	& 128, 64, 32, 16, 8, 4, 2 /
601	!!----------------------------------------------------------------------
602
603	! Clear the error flag and initialise output vars
604	kerr = 0
605	kfax = 1
606	knfax = 0
607
608	! Find the factors of n.
609	IF( kn == 1 ) GOTO 20
610
611	! nu holds the unfactorised part of the number.
612	! knfax holds the number of factors found.
613	! l points to the allowed factor list.
614	! ifac holds the current factor.
615
616	inu = kn
617	knfax = 0
618
619	DO jl = ntest, 1, -1
620	!
621	ifac = ilfax(jl)
622	IF( ifac > inu ) CYCLE
623
624	! Test whether the factor will divide.
625
626	IF( MOD(inu,ifac) == 0 ) THEN
627	!
628	knfax = knfax + 1 ! Add the factor to the list
629	IF( knfax > kmaxfax ) THEN
630	kerr = 6
631	write (,) 'FACTOR: insufficient space in factor array ', knfax
632	return
633	ENDIF
634	kfax(knfax) = ifac
635	! Store the other factor that goes with this one
636	knfax = knfax + 1
637	kfax(knfax) = inu / ifac
638	!WRITE (,) 'ARPDBG, factors ',knfax-1,' & ',knfax,' are ', kfax(knfax-1),' and ',kfax(knfax)
639	ENDIF
640	!
641	END DO
642
643	20 CONTINUE ! Label 20 is the exit point from the factor search loop.
644	!
645	END SUBROUTINE factorise
646
647	#if defined key_mpp_mpi
648	SUBROUTINE nemo_northcomms
649	!!======================================================================
650	!! * ROUTINE nemo_northcomms *
651	!! nemo_northcomms : Setup for north fold exchanges with explicit peer to peer messaging
652	!!=====================================================================
653	!!----------------------------------------------------------------------
654	!!
655	!! ** Purpose : Initialization of the northern neighbours lists.
656	!!----------------------------------------------------------------------
657	!! 1.0 ! 2011-10 (A. C. Coward, NOCS & J. Donners, PRACE)
658	!!----------------------------------------------------------------------
659
660	INTEGER :: ji, jj, jk, ij, jtyp ! dummy loop indices
661	INTEGER :: ijpj ! number of rows involved in north-fold exchange
662	INTEGER :: northcomms_alloc ! allocate return status
663	REAL(wp), ALLOCATABLE, DIMENSION ( :,: ) :: znnbrs ! workspace
664	LOGICAL, ALLOCATABLE, DIMENSION ( : ) :: lrankset ! workspace
665
666	IF(lwp) WRITE(numout,*)
667	IF(lwp) WRITE(numout,*) 'nemo_northcomms : Initialization of the northern neighbours lists'
668	IF(lwp) WRITE(numout,*) '~~~~~~~~~~'
669
670	!!----------------------------------------------------------------------
671	ALLOCATE( znnbrs(jpi,jpj), stat = northcomms_alloc )
672	ALLOCATE( lrankset(jpnij), stat = northcomms_alloc )
673	IF( northcomms_alloc /= 0 ) THEN
674	WRITE(numout,cform_war)
675	WRITE(numout,*) 'northcomms_alloc : failed to allocate arrays'
676	CALL ctl_stop( 'STOP', 'nemo_northcomms : unable to allocate temporary arrays' )
677	ENDIF
678	nsndto = 0
679	isendto = -1
680	ijpj = 4
681	!
682	! This routine has been called because ln_nnogather has been set true ( nammpp )
683	! However, these first few exchanges have to use the mpi_allgather method to
684	! establish the neighbour lists to use in subsequent peer to peer exchanges.
685	! Consequently, set l_north_nogather to be false here and set it true only after
686	! the lists have been established.
687	!
688	l_north_nogather = .FALSE.
689	!
690	! Exchange and store ranks on northern rows
691
692	DO jtyp = 1,4
693
694	lrankset = .FALSE.
695	znnbrs = narea
696	SELECT CASE (jtyp)
697	CASE(1)
698	CALL lbc_lnk( znnbrs, 'T', 1. ) ! Type 1: T,W-points
699	CASE(2)
700	CALL lbc_lnk( znnbrs, 'U', 1. ) ! Type 2: U-point
701	CASE(3)
702	CALL lbc_lnk( znnbrs, 'V', 1. ) ! Type 3: V-point
703	CASE(4)
704	CALL lbc_lnk( znnbrs, 'F', 1. ) ! Type 4: F-point
705	END SELECT
706
707	IF ( njmppt(narea) .EQ. MAXVAL( njmppt ) ) THEN
708	DO jj = nlcj-ijpj+1, nlcj
709	ij = jj - nlcj + ijpj
710	DO ji = 1,jpi
711	IF ( INT(znnbrs(ji,jj)) .NE. 0 .AND. INT(znnbrs(ji,jj)) .NE. narea ) &
712	& lrankset(INT(znnbrs(ji,jj))) = .true.
713	END DO
714	END DO
715
716	DO jj = 1,jpnij
717	IF ( lrankset(jj) ) THEN
718	nsndto(jtyp) = nsndto(jtyp) + 1
719	IF ( nsndto(jtyp) .GT. jpmaxngh ) THEN
720	CALL ctl_stop( ' Too many neighbours in nemo_northcomms ', &
721	& ' jpmaxngh will need to be increased ')
722	ENDIF
723	isendto(nsndto(jtyp),jtyp) = jj-1 ! narea converted to MPI rank
724	ENDIF
725	END DO
726	ENDIF
727
728	END DO
729
730	!
731	! Type 5: I-point
732	!
733	! ICE point exchanges may involve some averaging. The neighbours list is
734	! built up using two exchanges to ensure that the whole stencil is covered.
735	! lrankset should not be reset between these 'J' and 'K' point exchanges
736
737	jtyp = 5
738	lrankset = .FALSE.
739	znnbrs = narea
740	CALL lbc_lnk( znnbrs, 'J', 1. ) ! first ice U-V point
741
742	IF ( njmppt(narea) .EQ. MAXVAL( njmppt ) ) THEN
743	DO jj = nlcj-ijpj+1, nlcj
744	ij = jj - nlcj + ijpj
745	DO ji = 1,jpi
746	IF ( INT(znnbrs(ji,jj)) .NE. 0 .AND. INT(znnbrs(ji,jj)) .NE. narea ) &
747	& lrankset(INT(znnbrs(ji,jj))) = .true.
748	END DO
749	END DO
750	ENDIF
751
752	znnbrs = narea
753	CALL lbc_lnk( znnbrs, 'K', 1. ) ! second ice U-V point
754
755	IF ( njmppt(narea) .EQ. MAXVAL( njmppt )) THEN
756	DO jj = nlcj-ijpj+1, nlcj
757	ij = jj - nlcj + ijpj
758	DO ji = 1,jpi
759	IF ( INT(znnbrs(ji,jj)) .NE. 0 .AND. INT(znnbrs(ji,jj)) .NE. narea ) &
760	& lrankset( INT(znnbrs(ji,jj))) = .true.
761	END DO
762	END DO
763
764	DO jj = 1,jpnij
765	IF ( lrankset(jj) ) THEN
766	nsndto(jtyp) = nsndto(jtyp) + 1
767	IF ( nsndto(jtyp) .GT. jpmaxngh ) THEN
768	CALL ctl_stop( ' Too many neighbours in nemo_northcomms ', &
769	& ' jpmaxngh will need to be increased ')
770	ENDIF
771	isendto(nsndto(jtyp),jtyp) = jj-1 ! narea converted to MPI rank
772	ENDIF
773	END DO
774	!
775	! For northern row areas, set l_north_nogather so that all subsequent exchanges
776	! can use peer to peer communications at the north fold
777	!
778	l_north_nogather = .TRUE.
779	!
780	ENDIF
781	DEALLOCATE( znnbrs )
782	DEALLOCATE( lrankset )
783
784	END SUBROUTINE nemo_northcomms
785	#else
786	SUBROUTINE nemo_northcomms ! Dummy routine
787	WRITE(,) 'nemo_northcomms: You should not have seen this print! error?'
788	END SUBROUTINE nemo_northcomms
789	#endif
790	!!======================================================================
791	END MODULE nemogcm

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