#!/bin/bash


## Messenger filenames
file_date=mesg_01_date.txt  ; file_rslt=mesg_02_result.txt
file_stat=mesg_03_status.txt; file_nemo=mesg_04_nemo.txt
file_xios=mesg_05_xios.txt  ; file_cmpf=mesg_06_compiler.txt
file_lmpi=mesg_07_mpi.txt   ; file_ncdf=mesg_08_netcdf.txt
file_inpt=mesg_09_inputs.txt; file_time=mesg_10_time.txt
file_memy=mesg_11_memory.txt; file_note=mesg_12_comments.txt


## Functions in order of use
print_step() {
    local char_nb=$( echo "$1" | wc -c )
    local outline=$( printf "%${char_nb}s" )

    printf "\nStep.....\n%s\n%s\n" "$1" ${outline// /-}
}

init_files() {
    echo 'Date'        	       > ${file_date}
    echo 'Result'              > ${file_rslt}
    echo 'Status'      	       > ${file_stat}
    echo 'NEMOGCM rev.'        > ${file_nemo}
    echo 'XIOS rev.'   	       > ${file_xios}
    echo 'Fortran compiler'    > ${file_cmpf}
    echo 'MPI libs'    	       > ${file_lmpi}
    echo 'NetCDF libs'         > ${file_ncdf}
    echo 'Input files' 	       > ${file_inpt}
    echo 'Elapsed time'        > ${file_time}
    echo 'Memory (Phy./Virt.)' > ${file_memy}
    echo 'Comments'            > ${file_note}

    ## 'Failed' status with 'Unknown error' by default
    echo ${TRUST_FLAG_RESULT} \
	>> ${file_rslt}
    echo 'Unknown error' \
	>> ${file_stat}
}

get_date() {
    ## UTC time zone for timestamping
    local dat=$( date -ud "${TRUST_TEST_DATE}" +"%F %R %Z" )

    echo $dat           \
	>> ${file_date}
}

get_nemo_rev() {
    local dir rev_loc
    local rev=0

    ## Loop on essential NEMO directories
    for dir in ${TRUST_SVN_CO} ${TRUST_IO_XIOS}; do

	## For time being, just get revision from XIOS with no action on directory
	if [ $dir == ${TRUST_IO_XIOS} ]; then
	    rev_loc=$( svn info $dir | awk '/Last Changed Rev/ {print $NF}' )
	    echo 'XIOS '${rev_loc} \
		>> model.log
	    echo "<a href=\"https://forge.ipsl.jussieu.fr/ioserver/changeset/${rev_loc}\" target=\"_blank\">${rev_loc}</a>"
		>> ${file_xios}
	    continue
	fi

	echo $dir && ${TRUST_SVN_ACTION} ${TRUST_DIR_NEMOGCM}/$dir
	rev_loc=$( svn info ${TRUST_DIR_NEMOGCM}/$dir  \
	           | awk '/Last Changed Rev/ {print $NF}'   )

	## Keep last rev. nb
	[ ${rev_loc} -gt $rev ] && rev=${rev_loc}
    done

    echo 'NEMOGCM '$rev \
	>> model.log
    echo "<a href=\"https://forge.ipsl.jussieu.fr/nemo/changeset/$rev\" target=\"_blank\">$rev</a>"
	>> ${file_nemo}
}

get_soft_rel() {
    local ver str

    ## Sourcing environment
    . ${TRUST_JOB_ENV}

    for str in ${TRUST_COMPILE_FORTRAN}                         \
	       ${TRUST_COMPILE_MPI}     ${TRUST_COMPILE_NETCDF} \
	       ${TRUST_IO_CDO}                                    ; do
	[ -z "$str" ] && continue
	ver=''

	## Extract version number after searching pattern in PATH env. variable
	ver=$( echo $PATH | sed "s|.*\($str[0-9.]*\).*|\1|" )

	## option --version would work for main Fortran compilers and CDO
	if [[ $str =~ ${TRUST_COMPILE_FORTRAN}|${TRUST_IO_CDO} ]]; then
	    ver=$( $str --version 2>&1 | grep -m1 -oe '\<[0-9. ]*\>' \
		   | xargs echo $str                                   )
	fi

	## Cleaning characters string to display proper soft name
	#str=$( echo $str | sed 's|[/-]||g'  )
	ver=$( echo $ver | sed 's|[/-]| |g' )

	echo $ver \
	    >> model.log
    done

    sed -n 3p model.log \
	>> ${file_cmpf}
    sed -n 4p model.log \
	>> ${file_lmpi}
    sed -n 5p model.log \
	>> ${file_ncdf}
}

get_inputs() {
     # List archive content & extract it by default
    local inputs_list=$( eval "
        for archive in ${TRUST_IO_FORC_TAR}; do
            tar -tvf ${TRUST_IO_FORC_PATH}/\$archive >> inputs_list.txt;
         done
         " )
    local inputs_get=$( eval "
        for archive in ${TRUST_IO_FORC_TAR}; do
            tar -vxf ${TRUST_IO_FORC_PATH}/\$archive  >       /dev/null;
         done
         " )
 
    ## List & copy files without archive
    if [ -z "${TRUST_IO_FORC_TAR}" ]; then
        inputs_list=" ls -lh ${TRUST_IO_FORC_PATH}/* >> inputs_list.txt"
        inputs_get=" \cp     ${TRUST_IO_FORC_PATH}/* .                 "
    fi

    ${inputs_list}; ${inputs_get}

#    for entry in ${TRUST_IO_FORC_PATH}; do
#
	# If path to file (assuming it is an archive)
#	if   [ -e $entry ]; then
#	    tar -tvf $entry >> inputs_list.txt;
#	    tar -vxf $entry  >       /dev/null;
	# If path to directory
#	elif [ -d $entry ]; then
#	    inputs_list=" ls -lh ${TRUST_IO_FORC_PATH}/* >> inputs_list.txt"
#	    inputs_get=" \cp     ${TRUST_IO_FORC_PATH}/* .                 "
#	fi    

#    done

    if [ $( find -name '*.gz' -print -quit ) ]; then
	find . -name '*.gz' -exec gzip -d {} \;
    fi
}

diff_inputs() {
    local dif file
    local files_list='' mesg='Same' 

    ###################################
    ## Think of copying initial test ##
    ###################################

    ## Simple diff
    for file in cpp_* 'inputs_list.txt' *namelist_* *.xml; do
	dif=''

	## Continue even if input file is not in here (see after)
	if [ -e ${TRUST_TEST_BENCHMARK}/$file ]; then
	    dif=$( diff -q $file ${TRUST_TEST_BENCHMARK}/$file )
	else 
	    dif=0
	fi

	## Pass over useless file omission in benckmark directory
	if [[ -n "$dif" && "$dif" != '0' ]]; then
	    mesg='Different'
	    echo $dif
	    files_list+=$file' '
	fi

    done

    [ $mesg == 'Same' ] && echo $mesg
    echo $mesg          \
	>> ${file_inpt}

    ## List different files for web comment
    [ -n "${files_list}" ] && echo 'Inputs  : '${files_list}'differ<br>' \
	>> temp_${file_note}
}

job_pending() {
    local outline=$( printf "%100s" ) time_elapsed=0 time_increment=30

    sleep ${time_increment}

    ## Append a log file while pending
    while [[ $( eval ${TRUST_JOB_STATE} )                \
	     && ${time_elapsed} -lt ${TRUST_JOB_TIMEOUT}   ]]; do
	printf "\n%s\n" ${outline// /#} \
	    >> computation.log
	[ -n "${TRUST_JOB_INFO}" ] && eval ${TRUST_JOB_INFO} \
	    >> computation.log
	sleep ${time_increment}
	time_elapsed=$(( ${time_elapsed} + ${time_increment} ))
    done

    sleep ${time_increment}

    ## Kill remaining job & stop the test if it's too long
    if [ ${time_elapsed} -eq ${TRUST_JOB_TIMEOUT} ]; then
	eval ${TRUST_JOB_KILL} &> /dev/null
	get_out 6
    fi

}

diff_results() {
    local file
    local files_list='' mesg='Same'

    ###################################
    ## Think of copying initial test ##
    ###################################

    ## Simple diff
    for file in 'ocean.output' *.stat; do
	## Stop if no minimal benchmark files (ocean.output, eventual stat files)
	[ ! -e ${TRUST_TEST_BENCHMARK}/$file ] && get_out 7

	diff -q $file ${TRUST_TEST_BENCHMARK}/$file

	## Continue even if it differs
	if [ $? -ne 0 ]; then mesg='Different'; files_list+=$file' '; fi

    done

    [ $mesg == 'Same' ] && echo $mesg

    ## List different files for web comment
    [ -n "${files_list}" ] && echo 'Results : '${files_list}'differ<br>' \
	>> temp_${file_note}
}

diff_restarts() {
    local dif filebase filebases ndomain out
    local files_list='' dif_sum='0' #bcmk='false'

    ## Find all restart files to rebuild
    if [ $( find -regex ".*_restart.*[0-9]\.nc" -print -quit ) ]; then
        ###############################################################
	## Think to set the configuration name in the 'namelist_cfg' ##
	###############################################################
	filebases=$( find -regextype sed -regex ".*${TRUST_CFG_NEW}.*_[0-9]\{4\}\.nc" \
	             | sed 's/\(.*\)_.*/\1/' | sort -u                                  )

	for filebase in $filebases; do

	    ndomain=$( find -regex ".*${filebase}_[0-9]*.nc" \
		       | wc -l | awk '{print $1}'              )

	    [ $ndomain -eq 0 ] && get_out X

            #####################################################
            ## Handle 2 possibilities of 'rebuild_nemo' origin ##
            #####################################################

	    ${TRUST_DIR_NEMOGCM}/TOOLS/REBUILD_NEMO/rebuild_nemo \
		-t ${TRUST_COMPILE_NPROC} $filebase $ndomain       \
		> /dev/null

	    ## Possibility of remaining decomposed restarts (even after rebuild)
	    if [ $? -eq 0 ]; then
		rm -f ${filebase}_[0-9]*.nc \
                    > /dev/null
	    else
		get_out X
	    fi

            ## Stop if no benchmark files (restart file)
	    if [ -e ${TRUST_TEST_BENCHMARK}/$filebase.nc ]; then

		#bcmk='true'
		cdo diffn $filebase.nc ${TRUST_TEST_BENCHMARK}/$filebase.nc \
		    > cdo_diff.out 2> /dev/null

		## Identical if cdo_diff.out is zero size
		[ ! -s cdo_diff.out ] && continue

		dif=$( grep -om1 '[0-9]* of [0-9]* records' cdo_diff.out )

		if [ -n "$dif" ]; then
		    files_list+=$filebase' ' && echo $filebase'.nc: '$dif
		    let dif_sum+=$( echo $dif | sed '|^\([0-9]*\).*|\1|' )
		fi

	    fi

	done

        ## List modified restart(s) for web comment with sum of differences
	if [ ${dif_sum} -ne 0 ]; then
	    echo 'Restarts: '${files_list}${dif_sum}' record(s) differ<br>' \
		>> temp_${file_note}
	else
	    echo 'Same'
	fi

    fi

}

get_time() {
    [ -z "${TRUST_JOB_TIME}" ] && return

    ## Interest for checking unusual time computation
    local time_cpu=$( eval ${TRUST_JOB_TIME} )

    printf "Elapsed time: "
    echo ${time_cpu} | tee -a ${file_time}
}

get_memy() {
    [[ -z "${TRUST_JOB_RAM_P}" && -z "${TRUST_JOB_RAM_V}" ]] && return

    ## Interest for checking unusual memory usage
    local memory_pmax=$( eval ${TRUST_JOB_RAM_P} )
    local memory_vmax=$( eval ${TRUST_JOB_RAM_V} )

    printf "Memory max usage (physical/virtual): "
    echo ${memory_pmax}' / '${memory_vmax} | tee -a ${file_memy}
}

comments() {
    local opat
    local line='' state=$1

    if [ -e ocean.output ]; then
        ## 'W A R N I N G' pattern by default
	opat="-A2 \"^ $state\""
	[ "$state" == 'E R R O R' ] && opat="-A4 \"$state\""

        ## Select first occurence for web comment
	line=$( eval grep -m1 $opat ocean.output | tr -d '\n' )
    fi

    [ -n "$line" ] && ( echo $line; printf "$line<br>" \
	>> temp_${file_note} )
}

log_make() {
    ## Format comments for web
    if [ -e temp_${file_note} ]; then
	cat temp_${file_note} | tr -d '\n' | sed 's/<br>$//' \
	    >> ${file_note}
    fi

    ## Construct txt file with all messenger files
    paste -d ';' mesg_*.txt | tee ${TRUST_TEST_SUMMARY}
}

prod_publish() {
    local cmd
    local rev=$( awk '/NEMOGCM/ {print $NF}' model.log )

    ## Production mode (-p|--prod)
    if [ ${TRUST_FLAG_PROD} -eq 1 ]; then

	## Create or append trusting logfile
	if [ -f ${TRUST_TEST_LOG} ]; then cmd='tail -1'; else cmd='cat'; fi

	$cmd ${TRUST_TEST_SUMMARY}      \
	    >> ${TRUST_TEST_LOG}

        ## Send mail only when FAILED
	if [[ ! -z "${TRUST_TEST_MAILING}" \
	      && ${TRUST_FLAG_RESULT} == 'FAILED'   ]]; then

	    ## Content
	    cat <<END_MAIL      \
		> trusting.mail
Dear all,


The following trusting sequence has not completed successfully:

Testing configuration ${TRUST_CFG_NEW} based on ${TRUST_CFG_REF}.
User installation ${TRUST_MAIN_USER}
HPC environment ${TRUST_MAIN_HPCC}

Here is the running environment summary:
`cat model.log`

For more details, look into the testing folder at:
${TRUST_TEST_DIR}
An archive is also available to share the questionable configuration:
${TRUST_TEST_BENCHMARK}/${TRUST_TEST_BACKUP}

END_MAIL

	    ## Send with detailed subject
	    mail -s "[NEMO Trusting][${TRUST_CFG_REF}][${TRUST_SVN_BRANCH}] \
		     ${TRUST_FLAG_RESULT} ${TRUST_FLAG_ERROR}"              \
		 ${TRUST_TEST_MAILING}                                      \
		<  trusting.mail
	fi

    fi
}

get_out() {
    local time_step=0

    TRUST_FLAG_ERROR=$1

    printf "\n\nEnd of test\n"

    ## In case of compilation error
    cd ${TRUST_TEST_DIR}

    if [ ${TRUST_FLAG_RESULT} == 'FAILED' ]; then
	echo 'Failure'

        ## Error identification
	case ${TRUST_FLAG_ERROR} in
            ## Compilation
	    '1') TRUST_FLAG_ERROR='XIOS compilation failed' ;;
	    '2') TRUST_FLAG_ERROR='NEMO compilation failed' ;;
	    ## Submission
	    '3') TRUST_FLAG_ERROR='Missing input files'     ;;
	    '4') TRUST_FLAG_ERROR='Job submission error'    ;;
	    ## Computing
	    '5') TRUST_FLAG_ERROR='Crashed at time step'    ;;
	    '6') TRUST_FLAG_ERROR='Exceeded time limit'     ;;
	    ## Results
	    '7') TRUST_FLAG_ERROR='Missing previous outputs';;
	    '8') TRUST_FLAG_ERROR='New outputs differ'      ;;
	    ## Other
	    '*') TRUST_FLAG_ERROR='Unknown error'           ;;
	esac

    else
	echo 'Success' && TRUST_FLAG_ERROR='Code is reliable'
    fi

    ## Eventual comments from ocean.output
    if [ "${TRUST_FLAG_ERROR}" == 'Crashed at time step' ]; then
	comments 'E R R O R'
	[ -e time.step ] && time_step=$( cat time.step )
	TRUST_FLAG_ERROR+=' '$time_step
    else
	comments 'W A R N I N G'

	if [ "${TRUST_FLAG_ERROR}" == 'Exceeded time limit' ]; then
	    TRUST_FLAG_ERROR+=' '$(( ${TRUST_JOB_TIMEOUT}/3600 ))'h'
	fi

    fi

    ## Last messenger files
    sed -i "2 s/.*/$TRUST_RESULT/"     ${file_rslt}
    sed -i "2 s/.*/$TRUST_FLAG_ERROR/" ${file_stat}

    ## Save tested configuration if trusting failed in production mode (-p|--prod)
    if [[ ${TRUST_FLAG_RESULT} == 'FAILED' && ${TRUST_FLAG_PROD} -eq 1 ]]; then
	echo 'Creating archive '${TRUST_TEST_BACKUP}' under '${TRUST_TEST_BENCHMARK}
	tar -czf ${TRUST_TEST_BENCHMARK}/${TRUST_TEST_BACKUP}                 * \
	    -C   ${TRUST_DIR_NEMOGCM}/CONFIG/${TRUST_CFG_NEW}/MY_SRC . \
	    -C   ${TRUST_DIR_NEMOGCM}/CONFIG/${TRUST_CFG_NEW}          \
	         cpp_${TRUST_CFG_NEW}.fcm
    fi

    ## Logfile construct & eventual sending of notification email
    printf "\nTrusting digest:\n----------------\n"
    log_make
    prod_publish

    exit 0
}