source: branches/2015/dev_r5092_CNRS_SETTE/NEMOGCM/SETTE/sette_beginner.sh @ 5093

Last change on this file since 5093 was 4796, checked in by flavoni, 6 years ago

add ORCA2_LIM3 in SETTE, preparing ORCA2_LIM3 to be a reference configuration, see ticket #1396

  • Property svn:executable set to *
File size: 6.2 KB
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1#!/bin/bash
2#############################################################
3# Author : Simona Flavoni for NEMO
4# Contact : sflod@locean-ipsl.upmc.fr
5#
6# sette_beginner.sh   : example of script of SET TEsts for NEMO (SETTE)
7# ----------------------------------------------------------------------
8# NEMO/SETTE , NEMO Consortium (2010)
9# Software governed by the CeCILL licence     (NEMOGCM/NEMO_CeCILL.txt)
10# ----------------------------------------------------------------------
11#
12#############################################################
13#set -vx
14set -o posix
15#set -u
16#set -e
17#+
18#
19# ===================
20# sette_beginner.sh
21# ===================
22#
23# COMPILER          : name of compiler as defined in NEMOGCM/ARCH directory
24# BATCH_COMMAND_PAR :  name of the command for submitting parallel batch jobs
25# BATCH_COMMAND_SEQ :  name of the command for submitting sequential batch jobs 
26# INTERACT_FLAG     : flag to run in interactive mode "yes"
27#                           to run in batch mode "no"
28# MPIRUN_FLAG       : flag to run in parallel (MPI) "yes"
29#                           to run in sequential mode (NB_PROC = 1) "no"
30# USING_XIOS        : flag to control the activation of key_iomput
31#                      "yes" to compile using key_iomput and link to the external XIOS library
32#                      "no"  to compile without key_iomput and link to the old IOIPSL library
33# USING_MPMD        : flag to control the use of stand-alone IO servers
34#                     requires USING_XIOS="yes"
35#                      "yes" to run in MPMD (detached) mode with stand-alone IO servers
36#                      "no"  to run in SPMD (attached) mode without separate IO servers
37# NUM_XIOSERVERS    : number of stand-alone IO servers to employ
38#                     set to zero if USING_MPMD="no"
39#
40# Principal script is sette.sh, that calls
41#
42#  makenemo  : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
43#              and links to opa in ${CONFIG_NAME}/EXP00)
44#
45#  param.cfg : sets and loads following directories:
46#
47#   FORCING_DIR         : is the directory for forcing files (tarfile)
48#   INPUT_DIR           : is the directory for input files storing
49#   TMPDIR              : is the temporary directory (if needed)
50#   NEMO_VALIDATION_DIR : is the validation directory
51#
52#   (NOTE: this file is the same for all configrations to be tested with sette)
53#
54#   all_functions.sh : loads functions used by sette (note: new functions can be added here)
55#   set_namelist     : function declared in all_functions that sets namelist parameters
56#   post_test_tidyup : creates validation storage directory and copies required output files
57#                      (solver.stat and ocean.output) in it after execution of test.
58#
59#  VALIDATION tree is:
60#
61#   NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
62#
63#  prepare_exe_dir.sh : defines and creates directory where the test is executed
64#                       execution directory takes name of TEST_NAME defined for every test
65#                       in sette.sh. (each test in executed in its own directory)
66#
67#  prepare_job.sh     : to generate the script run_job.sh
68#
69#  fcm_job.sh         : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
70#                        see sette.sh and BATCH_TEMPLATE directory
71#
72#  NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
73#        can be found paths to the input tar file)
74#  NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
75#        directory
76#  NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
77#        remain in ${NEW_CONF}/EXP00
78#
79#  NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
80#        executed commands
81#
82#  NOTE: if sette.sh is stopped in output.sette there is written the last command
83#        executed by sette.sh
84#
85# example use: ./sette_beginner.sh
86#########################################################################################
87#
88# Compiler among those in NEMOGCM/ARCH
89COMPILER=x3750_ADA
90export BATCH_COMMAND_PAR="llsubmit"
91export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR
92export INTERACT_FLAG="yes"
93export MPIRUN_FLAG="yes"
94
95export DEL_KEYS="key_iomput"
96if [ ${USING_XIOS} == "yes" ]
97 then
98   export DEL_KEYS=""
99fi
100
101#
102# Settings which control the use of stand alone servers (only relevant if using xios)
103#
104export USING_MPMD="no"
105export NUM_XIOSERVERS=4
106export JOB_PREFIX=batch-mpmd
107#
108if [ ${USING_MPMD} == "no" ] 
109 then
110   export NUM_XIOSERVERS=0
111   export JOB_PREFIX=batch
112fi
113#
114#
115if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no"]
116 then
117   echo "Incompatible choices. MPMD mode requires the XIOS server"
118   exit
119fi
120#
121
122# Directory to run the tests
123SETTE_DIR=$(cd $(dirname "$0"); pwd)
124MAIN_DIR=${SETTE_DIR%/SETTE}
125CONFIG_DIR=${MAIN_DIR}/CONFIG
126TOOLS_DIR=${MAIN_DIR}/TOOLS
127COMPIL_DIR=${TOOLS_DIR}/COMPILE
128
129CMP_NAM=${1:-$COMPILER}
130# Copy job_batch_COMPILER file for specific compiler into job_batch_template
131cd ${SETTE_DIR}
132cp BATCH_TEMPLATE/batch-${COMPILER} job_batch_template || exit
133
134# Run for GYRE CONFIG
135# small test to start
136# compile GYRE configuration with gfortran_osx compiler run with 4 proc :
137export TEST_NAME="SHORT_TEST"
138cd ${CONFIG_DIR}
139. ./makenemo -m ${CMP_NAM} -n GYRE_SHORT -r GYRE -j 10 add_key "key_nosignedzero" del_key ${DEL_KEYS}
140cd ${SETTE_DIR}
141. ./param.cfg
142. ./all_functions.sh
143. ./prepare_exe_dir.sh
144# creation of execution directory
145JOB_FILE=${EXE_DIR}/run_job.sh
146# setting number of procs used
147NPROC=4
148if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
149cd ${EXE_DIR}
150# setting namelist parameters
151# experience name
152set_namelist namelist_cfg cn_exp \"GYRE_SHORT\"
153# first time step
154set_namelist namelist_cfg nn_it000 1
155# last time step
156set_namelist namelist_cfg nn_itend 120
157# frequency of creation of a restart file
158set_namelist namelist_cfg nn_stock 60
159if [ ${USING_MPMD} == "yes" ] ; then
160      set_xio_using_server iodef.xml true
161   else
162      set_xio_using_server iodef.xml false
163fi
164cd ${SETTE_DIR}
165. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS}
166# run job, with 4 processors, test named SHORT (= 60 time steps)
167cd ${SETTE_DIR}   
168. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
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