[5268] | 1 | #!/bin/bash |
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[5286] | 2 | # |
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| 3 | # Author: Patrick Brockmann |
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| 4 | # Contact: Patrick.Brockmann@cea.fr |
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| 5 | # History: |
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| 6 | # Modification: Nicolas-thierry.Martin@locean-ipsl.upmc.fr |
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| 7 | # |
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[5268] | 8 | |
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| 9 | |
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[5276] | 10 | # Set defaults |
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[5355] | 11 | #--------------------------------------------------- |
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| 12 | NEMO_TRUS=$( pwd $( dirname $0 ) ) |
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[5383] | 13 | SVN_CMD='svn status' |
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[5276] | 14 | DEBUG=0; PUBLISH=0; status='OK' |
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[5268] | 15 | |
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[5355] | 16 | # Get options for replacing some initials settings |
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| 17 | #--------------------------------------------------- |
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[5268] | 18 | while [ $# -ne 0 ]; do |
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| 19 | case $1 in |
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[5286] | 20 | -b|--branch ) NEMO_BRAN=$2 ; shift 2;; -d|--debug ) set -vx; DEBUG=1 ; shift ;; |
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| 21 | -e|--email ) MAIL=$2 ; shift 2;; -j|--job ) NPROC=$2 ; shift 2;; |
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[5355] | 22 | -h|--help ) cat trusting_help.txt; exit 1;; -m|--machine) CFG_ARCH=$2 ; shift 2;; |
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| 23 | -n|--newconf) TEST_CONF=$2 ; shift 2;; -r|--refconf) REFE_CONF=$2 ; shift 2;; |
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[5286] | 24 | -t|--time ) TIME_LIMI=$2 ; shift 2;; -p|--publish) PUBLISH=1 ; shift ;; |
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[5383] | 25 | -u|--user ) CFG_USER=$2 ; shift 2;; -v|--version) NEMO_VERS=$2 ; shift 2;; |
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[5355] | 26 | *) cat trusting_help.txt; exit 1;; |
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[5268] | 27 | esac |
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| 28 | done |
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[5276] | 29 | |
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[5355] | 30 | #export DEBUG PUBLISH |
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[5268] | 31 | |
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| 32 | |
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[5355] | 33 | # Initialization (super-computer & user environment) |
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| 34 | #--------------------------------------------------- |
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| 35 | if [[ ! -z "${CFG_ARCH}" && ! -z "${CFG_USER}" ]]; then |
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[5268] | 36 | |
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[5355] | 37 | if [ ! $( find ${NEMO_TRUS}/cfg -name ${CFG_USER}.cfg ) ]; then |
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| 38 | echo 'No configuration file in '${NEMO_TRUS}'/cfg for '${CFG_USER}; exit 1 |
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| 39 | elif [ ! $( find ${NEMO_TRUS}/cfg -name ${CFG_ARCH}.cfg ) ]; then |
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| 40 | echo 'No configuration file in '${NEMO_TRUS}'/cfg for '${CFG_ARCH}; exit 1 |
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| 41 | else |
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| 42 | . ${NEMO_TRUS}/trusting.env |
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| 43 | fi |
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[5268] | 44 | |
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[5355] | 45 | else |
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| 46 | cat ${NEMO_TRUS}/trusting_help.txt; exit 1 |
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| 47 | fi |
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[5268] | 48 | |
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[5383] | 49 | # If -v|--version option has been set, modify svn command |
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| 50 | [ $( echo ${NEMO_VERS} | grep "up\|update" ) ] && SVN_CMD='svn update' |
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| 51 | [ $( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) ] && SVN_CMD='svn update -r '$( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) |
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| 52 | |
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[5355] | 53 | . ./trusting_func.sh |
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[5268] | 54 | |
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[5424] | 55 | |
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| 56 | # |
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| 57 | #--------------------------------------------------- |
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[5355] | 58 | mkdir -p ${TEST_DIR} ${REFE_DIR} |
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| 59 | echo ${TEST_DIR} && cd ${TEST_DIR} |
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[5424] | 60 | datestr1=$( LC_ALL=C date -d"${DATE_STR}" +%Y-%m-%dT%H:%M ) |
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[5355] | 61 | printf "Date\n%s\n" $datestr1 > mesg_01_date_${CFG_USER}_${CFG_ARCH}.txt |
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| 62 | # Only at end status will change to OK |
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[5383] | 63 | printf "Status\nFAILED\n" > mesg_03_status_${CFG_USER}_${CFG_ARCH}.txt |
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[5355] | 64 | |
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| 65 | |
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| 66 | # Check softwares versions |
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| 67 | #--------------------------------------------------- |
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[5383] | 68 | printf "Step......................\nGet softwares release\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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| 69 | . ${ARCH_ENV} > /dev/null # Sourcing architecture environment |
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[5424] | 70 | get_soft_rel |
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[5402] | 71 | sed -n 2p model.log | sed 'i\Fortran compiler' | tee mesg_05_compiler_${CFG_USER}_${CFG_ARCH}.txt |
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| 72 | sed -n 3p model.log | sed 'i\MPI libraries ' | tee mesg_06_mpi_${CFG_USER}_${CFG_ARCH}.txt |
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| 73 | sed -n 4p model.log | sed 'i\NetCDF libraries' | tee mesg_07_netcdf_${CFG_USER}_${CFG_ARCH}.txt |
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[5268] | 74 | |
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| 75 | |
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[5355] | 76 | # SVN action on XIOS & NEMO essentials directories |
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| 77 | #--------------------------------------------------- |
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[5383] | 78 | printf "Step......................\nGet NEMO SVN revision with: ${SVN_CMD}\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5424] | 79 | get_nemo_rev |
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| 80 | sed -n 6p model.log | sed 'i\NEMO revision' | tee mesg_02_nemo_${CFG_USER}_${CFG_ARCH}.txt |
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[5292] | 81 | |
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[5355] | 82 | |
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| 83 | # NEMO config compiled from scratch |
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| 84 | #--------------------------------------------------- |
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[5383] | 85 | printf "Step......................\nCompiling ${CONF_REF} configuration\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5276] | 86 | cd ${NEMO_CONF} |
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[5355] | 87 | #[ -d ${TEST_CONF} ] && ./makenemo -n ${TEST_CONF} clean |
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[5424] | 88 | ./makenemo -n ${TEST_CONF} -r ${REFE_CONF} -m $ARCH -j $NPROC >& /dev/null |
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[5355] | 89 | [ ! -e ${TEST_CONF}/BLD/bin/nemo.exe ] && get_out |
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[5268] | 90 | |
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| 91 | |
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[5355] | 92 | # Get namelists, xml & forced files for running |
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| 93 | #--------------------------------------------------- |
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[5402] | 94 | cd ${TEST_DIR} |
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[5383] | 95 | printf "Step......................\nPreparing job\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5355] | 96 | find ${NEMO_CONF}/${TEST_CONF}/EXP00 -regex '.*\(cfg\|opa\|ref\|xml\)' -exec cp {} . \; |
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[5268] | 97 | |
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[5402] | 98 | if [ ! -z "${FORC_TAR}" ]; then |
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| 99 | cmd_iol="tar -tvf ${NEMO_FORC}/${FORC_TAR}"; cmd_iof="tar -vxf ${NEMO_FORC}/${FORC_TAR}" |
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[5286] | 100 | else |
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[5402] | 101 | cmd_iol="ls ${NEMO_FORC}/*" ; cmd_iof="\cp ${NEMO_FORC}/* ." |
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[5286] | 102 | fi |
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[5268] | 103 | |
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[5402] | 104 | ${cmd_iol} > inputs_list.txt && ${cmd_iof} > /dev/null |
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| 105 | [ $? -ne 0 ] && get_out |
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| 106 | [ $( find . -name '*.gz' -print -quit ) ] && gunzip *.gz |
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[5432] | 107 | exit 0 |
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[5286] | 108 | |
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[5355] | 109 | # Job submission & computing |
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| 110 | #--------------------------------------------------- |
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[5383] | 111 | printf "Step......................\nRunning\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt; echo ${JOB_SUBM} |
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[5355] | 112 | job_num=$( ${JOB_SUBM} | awk '{print $NF}' ) |
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| 113 | [ $? -ne 0 ] && get_out |
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[5268] | 114 | |
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[5355] | 115 | time_elapsed=0; time_increment=30 |
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[5268] | 116 | sleep ${time_increment} |
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[5402] | 117 | while [[ $( ${JOB_LIST} | grep ${job_num} ) && ${time_elapsed} -lt ${TIME_LIMI} ]]; do |
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[5286] | 118 | printf "\n####################################################" >> computation.log |
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[5402] | 119 | ${JOB_VIEW} ${job_num} >> computation.log |
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[5268] | 120 | sleep ${time_increment} |
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[5286] | 121 | let time_elapsed+=${time_increment} |
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[5268] | 122 | done |
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[5402] | 123 | sleep ${time_increment} |
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[5268] | 124 | |
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[5355] | 125 | # Eventual crash during computing |
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| 126 | #--------------------------------------------------- |
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[5383] | 127 | printf "Step......................\nTest if ASCII output files exist\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5355] | 128 | if [ ! -f ocean.output ]; then |
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[5383] | 129 | printf "Step......................\nOpa crashed at initialization\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5402] | 130 | ${JOB_DELE} ${job_num} >/dev/null 2>&1 |
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[5355] | 131 | status='FAILED' |
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| 132 | elif [ $( grep 'E R R O R' ocean.output ) ]; then |
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[5383] | 133 | printf "Step......................\nOpa crashed\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5402] | 134 | grep 'E R R O R' ocean.output | tee mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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| 135 | sed 's/^/Time step :/' time.step | tee -a mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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| 136 | ${JOB_DELE} ${job_num} >/dev/null 2>&1 |
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[5355] | 137 | status='FAILED' |
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[5286] | 138 | fi |
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| 139 | |
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| 140 | |
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[5355] | 141 | # Inspect output text files |
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| 142 | #--------------------------------------------------- |
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[5383] | 143 | printf "Step......................\nTest ASCII output files difference\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5286] | 144 | for file in ocean.output solver.stat tracer.stat; do |
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[5355] | 145 | diff $file ${REFE_DIR}/$file |
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[5286] | 146 | [ $? -ne 0 ] && status='FAILED' |
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| 147 | done |
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[5268] | 148 | |
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| 149 | |
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[5355] | 150 | # Inspect output NetCDF files |
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| 151 | #--------------------------------------------------- |
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[5383] | 152 | printf "Step......................\nTest last restart NetCDF files difference\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5355] | 153 | diff_restart 2>/dev/null |
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[5286] | 154 | [ $? -ne 0 ] && status='FAILED' |
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[5268] | 155 | |
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| 156 | |
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[5402] | 157 | # Finals tests |
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[5355] | 158 | #--------------------------------------------------- |
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[5402] | 159 | if [ $status != 'FAILED' ]; then |
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[5268] | 160 | |
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[5402] | 161 | # Comments |
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| 162 | #--------------------------------------------------- |
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| 163 | echo 'Comments' | tee mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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| 164 | grep 'W A R N I N G:' ocean.output | tee -a mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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[5268] | 165 | |
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[5402] | 166 | # Portability ! |
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[5383] | 167 | printf "Step......................\nGet real CPU time\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5402] | 168 | real_cpu_time=$( ${JOB_VIEW} ${job_num} | awk 'END{print $9}' ) |
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| 169 | printf "Real CPU time\n%s\n" ${real_cpu_time} | tee mesg_08_realcputime_${CFG_USER}_${CFG_ARCH}.txt |
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[5424] | 170 | printf "Input files\nNA" | tee mesg_09_inputfiles_${CFG_USER}_${CFG_ARCH}.txt |
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[5268] | 171 | else |
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[5383] | 172 | printf "Step......................\nTest input files difference\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5402] | 173 | diff_inputs |
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[5355] | 174 | get_out |
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[5268] | 175 | fi |
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| 176 | |
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| 177 | |
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[5355] | 178 | # So far, everything is good |
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| 179 | #--------------------------------------------------- |
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[5383] | 180 | printf "Status\nOK\n" > mesg_03_status_${CFG_USER}_${CFG_ARCH}.txt |
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| 181 | printf "Step......................\nCode is reliable\n" | tee mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5268] | 182 | |
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[5355] | 183 | |
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| 184 | # End |
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| 185 | #--------------------------------------------------- |
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| 186 | get_out |
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