1 | #!/bin/bash |
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2 | # |
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3 | # Author: Patrick Brockmann |
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4 | # Contact: Patrick.Brockmann@cea.fr |
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5 | # History: |
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6 | # Modification: Nicolas-thierry.Martin@locean-ipsl.upmc.fr |
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7 | # |
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8 | |
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9 | |
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10 | # Set defaults |
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11 | #--------------------------------------------------- |
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12 | NEMO_TRUS=$( pwd $( dirname $0 ) ) |
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13 | DEBUG=0; PUBLISH=0; status='OK' |
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14 | |
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15 | # Get options for replacing some initials settings |
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16 | #--------------------------------------------------- |
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17 | while [ $# -ne 0 ]; do |
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18 | case $1 in |
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19 | -b|--branch ) NEMO_BRAN=$2 ; shift 2;; -d|--debug ) set -vx; DEBUG=1 ; shift ;; |
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20 | -e|--email ) MAIL=$2 ; shift 2;; -j|--job ) NPROC=$2 ; shift 2;; |
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21 | -h|--help ) cat trusting_help.txt; exit 1;; -m|--machine) CFG_ARCH=$2 ; shift 2;; |
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22 | -n|--newconf) TEST_CONF=$2 ; shift 2;; -r|--refconf) REFE_CONF=$2 ; shift 2;; |
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23 | -t|--time ) TIME_LIMI=$2 ; shift 2;; -p|--publish) PUBLISH=1 ; shift ;; |
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24 | -u|--user ) CFG_USER=$2 ; shift 2;; -v|--version) NEMO_REVI=$2 ; shift 2;; |
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25 | *) cat trusting_help.txt; exit 1;; |
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26 | esac |
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27 | done |
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28 | |
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29 | #export DEBUG PUBLISH |
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30 | |
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31 | |
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32 | # Initialization (super-computer & user environment) |
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33 | #--------------------------------------------------- |
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34 | if [[ ! -z "${CFG_ARCH}" && ! -z "${CFG_USER}" ]]; then |
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35 | |
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36 | if [ ! $( find ${NEMO_TRUS}/cfg -name ${CFG_USER}.cfg ) ]; then |
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37 | echo 'No configuration file in '${NEMO_TRUS}'/cfg for '${CFG_USER}; exit 1 |
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38 | elif [ ! $( find ${NEMO_TRUS}/cfg -name ${CFG_ARCH}.cfg ) ]; then |
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39 | echo 'No configuration file in '${NEMO_TRUS}'/cfg for '${CFG_ARCH}; exit 1 |
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40 | else |
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41 | . ${NEMO_TRUS}/trusting.env |
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42 | fi |
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43 | |
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44 | else |
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45 | cat ${NEMO_TRUS}/trusting_help.txt; exit 1 |
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46 | fi |
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47 | |
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48 | datestr1=$( LC_ALL=C date -d"${DATE_STR}" +%Y-%m-%dT%H:%M ) |
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49 | . ./trusting_func.sh |
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50 | |
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51 | mkdir -p ${TEST_DIR} ${REFE_DIR} |
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52 | echo ${TEST_DIR} && cd ${TEST_DIR} |
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53 | printf "Date\n%s\n" $datestr1 > mesg_01_date_${CFG_USER}_${CFG_ARCH}.txt |
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54 | # Only at end status will change to OK |
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55 | printf "Status\nFAILED\n" > mesg_02_status_${CFG_USER}_${CFG_ARCH}.txt |
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56 | |
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57 | |
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58 | # Check softwares versions |
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59 | #--------------------------------------------------- |
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60 | printf "Step......................\nGet softwares release\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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61 | for rel in $CDO $COMPILER $MPI $NETCDF; do |
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62 | arch_rel=$( echo $LOADEDMODULES | sed "s#.*:$rel/\([^:]*\).*#\1#" ) |
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63 | [ -z "${arch_rel}" ] && arch_rel=$( echo $PATH | sed "s#.*$rel/\([^/]*\).*#\1#" ) |
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64 | # [ $( echo $rel | grep $COMPILER ) ] && arch_rel=$( $rel --version | grep -m1 -o ' [0-9.]* ' >/dev/null ) |
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65 | echo $rel ${arch_rel} >> model.log |
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66 | done |
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67 | |
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68 | sed -n 2p model.log | sed 'i\Fortran compiler' > mesg_04_compiler_${CFG_USER}_${CFG_ARCH}.txt |
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69 | sed -n 3p model.log | sed 'i\MPI libraries ' > mesg_05_mpi_${CFG_USER}_${CFG_ARCH}.txt |
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70 | sed -n 4p model.log | sed 'i\NetCDF libraries' > mesg_06_netcdf_${CFG_USER}_${CFG_ARCH}.txt |
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71 | |
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72 | |
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73 | # SVN action on XIOS & NEMO essentials directories |
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74 | #--------------------------------------------------- |
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75 | svn_cmd='svn status' |
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76 | # If -v|--version option has been set, modify svn command |
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77 | [ $( echo ${NEMO_VERS} | grep "up\|update" ) ] && svn_cmd='svn update' |
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78 | [ $( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) ] && svn_cmd='svn update -r '$( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) |
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79 | |
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80 | printf "Step......................\nGet NEMO SVN revision with: ${svn_cmd}\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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81 | rev=0 |
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82 | |
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83 | for dir in ${DIR_XIOS} ${NEMO_ARCH} ${NEMO_CONF} ${NEMO_EFCM} ${NEMO_ENGI} ${NEMO_IPSL} ${NEMO_TRUS} ${NEMO_TCMP}; do |
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84 | # For time being, just get revision number from XIOS |
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85 | [ $dir == ${DIR_XIOS} ] && echo 'XIOS '$( svn info $dir | awk '(NR == 9) {print $NF}' ) >> model.log && continue |
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86 | ${svn_cmd} $dir |
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87 | rev_loc=$( svn info $dir | awk '(NR == 9) {print $NF}' ) |
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88 | (( ${rev_loc} >= $rev )) && rev=${rev_loc} |
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89 | done |
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90 | echo 'NEMO '$rev >> model.log |
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91 | |
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92 | |
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93 | # NEMO config compiled from scratch |
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94 | #--------------------------------------------------- |
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95 | printf "Step......................\nCompiling ${CONF_REF} configuration\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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96 | cd ${NEMO_CONF} |
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97 | . ${ARCH_ENV} > /dev/null # Sourcing architecture environment |
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98 | #[ -d ${TEST_CONF} ] && ./makenemo -n ${TEST_CONF} clean |
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99 | ./makenemo -n ${TEST_CONF} -r ${REFE_CONF} -m $ARCH -j $NPROC > /dev/null 2>&1 |
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100 | [ ! -e ${TEST_CONF}/BLD/bin/nemo.exe ] && get_out |
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101 | |
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102 | |
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103 | # Get namelists, xml & forced files for running |
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104 | #--------------------------------------------------- |
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105 | printf "Step......................\nPreparing job\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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106 | cd ${TEST_DIR} |
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107 | find ${NEMO_CONF}/${TEST_CONF}/EXP00 -regex '.*\(cfg\|opa\|ref\|xml\)' -exec cp {} . \; |
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108 | |
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109 | if [ ! -z "${NEMO_FORC}" ]; then |
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110 | cp ${NEMO_FORC}/${FORC_TAR} . |
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111 | tar -tvf ${FORC_TAR} > inputs_list.txt && tar -vxf ${FORC_TAR} > /dev/null |
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112 | [ $? -ne 0 ] && get_out |
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113 | gunzip *.gz |
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114 | else |
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115 | touch inputs_list.txt |
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116 | fi |
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117 | |
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118 | |
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119 | # Job submission & computing |
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120 | #--------------------------------------------------- |
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121 | printf "Step......................\nRunning\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt; echo ${JOB_SUBM} |
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122 | job_num=$( ${JOB_SUBM} | awk '{print $NF}' ) |
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123 | [ $? -ne 0 ] && get_out |
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124 | |
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125 | time_elapsed=0; time_increment=30 |
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126 | sleep ${time_increment} |
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127 | while [[ $( ${JOB_LIST} | grep $job_num ) && ${time_elapsed} -lt ${TIME_LIMI} ]]; do |
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128 | printf "\n####################################################" >> computation.log |
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129 | ${JOB_VIEW} $job_num >> computation.log |
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130 | sleep ${time_increment} |
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131 | let time_elapsed+=${time_increment} |
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132 | done |
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133 | |
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134 | |
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135 | # Eventual crash during computing |
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136 | #--------------------------------------------------- |
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137 | printf "Step......................\nTest if ASCII output files exist\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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138 | if [ ! -f ocean.output ]; then |
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139 | printf "Step......................\nOpa crashed at initialization\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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140 | status='FAILED' |
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141 | elif [ $( grep 'E R R O R' ocean.output ) ]; then |
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142 | printf "Step......................\nOpa crashed\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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143 | grep 'E R R O R' ocean.output >> mesg_11_comments_${CFG_USER}_${CFG_ARCH}.txt |
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144 | sed 's/^/Time step :/' time.step >> mesg_11_comments_${CFG_USER}_${CFG_ARCH}.txt |
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145 | status='FAILED' |
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146 | fi |
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147 | |
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148 | |
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149 | # Inspect output text files |
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150 | #--------------------------------------------------- |
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151 | printf "Step......................\nTest ASCII output files difference\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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152 | for file in ocean.output solver.stat tracer.stat; do |
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153 | diff $file ${REFE_DIR}/$file |
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154 | [ $? -ne 0 ] && status='FAILED' |
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155 | done |
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156 | |
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157 | |
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158 | # Inspect output NetCDF files |
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159 | #--------------------------------------------------- |
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160 | printf "Step......................\nTest last restart NetCDF files difference\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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161 | diff_restart 2>/dev/null |
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162 | [ $? -ne 0 ] && status='FAILED' |
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163 | |
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164 | |
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165 | # Comments |
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166 | #--------------------------------------------------- |
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167 | echo 'Comments' > mesg_11_comments_${CFG_USER}_${CFG_ARCH}.txt |
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168 | grep 'W A R N I N G:' ocean.output >> mesg_11_comments_${CFG_USER}_${CFG_ARCH}.txt |
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169 | |
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170 | |
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171 | # Finals tests |
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172 | #--------------------------------------------------- |
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173 | if [ $status != 'FAILED' ]; then |
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174 | printf "Step......................\nGet real CPU time\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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175 | real_cpu_time=$( ${JOB_VIEW} $job_num | awk 'END{print $9}' ) |
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176 | printf "Real CPU time\n%s\n" ${real_cpu_time} > mesg_08_realcputime_${CFG_USER}_${CFG_ARCH}.txt |
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177 | else |
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178 | printf "Step......................\nTest input files difference\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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179 | diff inputs_list.txt ${REFE_DIR}/inputs_list.txt |
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180 | |
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181 | if [ $? -ne 0]; then |
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182 | printf "Input files\nDifferent" > mesg_09_inputfiles_${CFG_USER}_${CFG_ARCH}.txt |
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183 | else |
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184 | printf "Input files\nSame" > mesg_09_inputfiles_${CFG_USER}_${CFG_ARCH}.txt |
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185 | fi |
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186 | |
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187 | get_out |
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188 | fi |
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189 | |
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190 | |
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191 | # So far, everything is good |
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192 | #--------------------------------------------------- |
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193 | printf "Status\nOK\n" > mesg_02_status_${CFG_USER}_${CFG_ARCH}.txt |
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194 | printf "Step......................\nCode is reliable\n" | tee mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt |
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195 | |
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196 | |
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197 | # End |
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198 | #--------------------------------------------------- |
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199 | get_out |
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