[5268] | 1 | #!/bin/bash |
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| 2 | |
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[5383] | 3 | |
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[5438] | 4 | comments() { |
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[5455] | 5 | state=$1 |
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[5453] | 6 | |
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[5455] | 7 | if [ $state == 'E R R O R' ]; then |
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| 8 | if [ -e ocean.output ]; then |
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| 9 | last_time_step=$( cat ${TEST_DIR}/time.step | tr -d [:space:] ) |
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| 10 | STEP='nemo.exe crashed at '${last_time_step} && export STEP |
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[5459] | 11 | line=$( grep -m1 -A5 "$state" ocean.output | tr -d '\n' ) |
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[5455] | 12 | else |
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| 13 | STEP='nemo.exe crashed at initialization' && export STEP |
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| 14 | return |
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| 15 | fi |
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| 16 | fi |
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[5453] | 17 | |
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[5459] | 18 | if [ $( diff -q arch_env.log ${REFE_DIR}/arch_env.log ) ]; then |
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| 19 | line=$( diff arch_env.log ${REFE_DIR}/arch_env.log | tr -d '\n' ) |
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[5455] | 20 | fi |
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| 21 | |
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[5452] | 22 | printf "Comments\n$line\n" | tee mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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[5438] | 23 | } |
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| 24 | |
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| 25 | get_cpu_time() { |
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| 26 | # Portability ! |
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[5452] | 27 | real_cpu_time=$( ${JOB_VIEW} ${JOB_ID} | awk 'END{print $9}' ) |
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| 28 | printf "Real CPU time\n${real_cpu_time}\n" | tee mesg_09_realcputime_${CFG_USER}_${CFG_ARCH}.txt |
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[5438] | 29 | } |
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| 30 | |
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[5402] | 31 | diff_inputs() { |
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[5438] | 32 | mesg='Same' |
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| 33 | |
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[5453] | 34 | for file in inputs_list.txt $( ls namelist_* ) $( ls *.xml ); do |
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[5402] | 35 | diff $file ${REFE_DIR}/$file |
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[5438] | 36 | [ $? -ne 0 ] && mesg='Different' |
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[5402] | 37 | done |
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| 38 | |
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[5452] | 39 | printf "Input files\n$mesg\n" | tee mesg_08_inputfiles_${CFG_USER}_${CFG_ARCH}.txt |
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[5402] | 40 | } |
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| 41 | |
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[5383] | 42 | diff_restart() { |
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[5402] | 43 | last_time_step=$( cat ${REFE_DIR}/time.step | tr -d [:space:] ) |
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[5438] | 44 | echo 'Last time step of standard run: '${last_time_step} |
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[5383] | 45 | |
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[5424] | 46 | if [ $( find ${TEST_DIR} -name "*${last_time_step}_restart*.nc" -print -quit ) ]; then |
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[5438] | 47 | base_name=$( find ${TEST_DIR} -name "*${last_time_step}_restart*.nc" -print -quit \ |
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| 48 | | awk -F/ '{print $NF}' | sed "s/^\(.*\)$last_time_step\_.*/\1$last_time_step/" ) |
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[5424] | 49 | |
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[5432] | 50 | for comp in restart restart_ice restart_trc; do |
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[5438] | 51 | printf "${base_name}_${comp}.nc: " |
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[5424] | 52 | |
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[5438] | 53 | nb_dom=$( find ${TEST_DIR} -name "${base_name}_${comp}_[0-9]*.nc" | wc -l | awk '{print $1}' ) |
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[5424] | 54 | if [ ${nb_dom} -gt 1 ]; then |
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[5438] | 55 | ${NEMO_TRBD}/rebuild_nemo -t $NPROC ${base_name}_$comp ${nb_dom} > /dev/null |
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[5424] | 56 | fi |
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| 57 | |
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[5438] | 58 | cmp ${TEST_DIR}/${base_name}_$comp.nc ${REFE_DIR}/${base_name}_$comp.nc |
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[5432] | 59 | if [ $? -ne 0 ]; then |
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[5455] | 60 | STATUS='FAILED'; STEP='Restart files different' |
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[5438] | 61 | printf "$CDO diffn\n" |
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| 62 | $CDO diffn ${TEST_DIR}/${base_name}_$comp.nc ${REFE_DIR}/${base_name}_$comp.nc 2> /dev/null |
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[5432] | 63 | else |
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| 64 | printf "identical\n" |
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| 65 | fi |
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[5438] | 66 | |
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| 67 | \rm ${TEST_DIR}/${base_name}_${comp}_[0-9]*.nc |
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[5424] | 68 | done |
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[5383] | 69 | |
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[5424] | 70 | else |
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[5455] | 71 | STATUS='FAILED'; STEP='No restart files found at last time step' |
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[5424] | 72 | printf "no restart files found for comparison\n" |
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| 73 | fi |
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[5455] | 74 | |
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| 75 | [ $STATUS == 'FAILED'] && get_out $STATUS $STEP |
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[5383] | 76 | } |
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| 77 | |
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[5424] | 78 | get_soft_rel() { |
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[5383] | 79 | for rel in $CDO $COMPILER $MPI $NETCDF; do |
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[5438] | 80 | arch_rel=$( echo $LOADEDMODULES | sed "s#.*$rel/\([^:]*\).*#\1#" ) |
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| 81 | [ -z "${arch_rel}" ] && arch_rel=$( echo $PATH | sed "s#.*$rel/\([^/]*\).*#\1#" ) |
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| 82 | [ $rel == $COMPILER ] && arch_rel=$( $rel --version | grep -m1 -o ' [0-9.]* ' ) |
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[5459] | 83 | echo $rel ${arch_rel} >> arch_env.log |
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[5383] | 84 | done |
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[5438] | 85 | |
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[5459] | 86 | sed -n 3p arch_env.log | sed 'i\Compiler' > mesg_05_compiler_${CFG_USER}_${CFG_ARCH}.txt |
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| 87 | sed -n 4p arch_env.log | sed 'i\MPI libs' > mesg_06_mpi_${CFG_USER}_${CFG_ARCH}.txt |
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| 88 | sed -n 5p arch_env.log | sed 'i\NetCDF libs' > mesg_07_netcdf_${CFG_USER}_${CFG_ARCH}.txt |
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[5383] | 89 | } |
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| 90 | |
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[5424] | 91 | get_nemo_rev() { |
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[5444] | 92 | svn_opt='status' |
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[5383] | 93 | |
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[5438] | 94 | # If -v|--version option has been set, modify svn command |
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[5444] | 95 | if [[ $( echo ${NEMO_VERS} | grep "HEAD\|up\|update" ) \ |
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| 96 | || $( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) ]]; then |
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| 97 | rev=$( echo ${NEMO_VERS} | tr -d '[:alpha:][:punct:]' ) || rev='HEAD' |
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| 98 | svn_cmd='svn update -r '$rev |
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| 99 | else |
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| 100 | svn_cmd='svn '${svn_opt} |
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[5438] | 101 | fi |
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| 102 | |
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[5444] | 103 | rev=0 |
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| 104 | for dir in ${DIR_XIOS} ${NEMO_ARCH} ${NEMO_CONF} ${NEMO_ENGI} \ |
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| 105 | ${NEMO_EIOI} ${NEMO_EFCM} ${NEMO_TCMP} ${NEMO_TRBD} ; do |
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[5438] | 106 | |
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[5383] | 107 | # For time being, just get revision number from XIOS |
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[5438] | 108 | if [ $dir == ${DIR_XIOS} ]; then |
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[5459] | 109 | echo 'XIOS '$( svn info $dir | awk '(NR == 5) {print $NF}' ) >> arch_env.log |
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[5438] | 110 | continue |
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| 111 | fi |
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| 112 | |
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[5444] | 113 | ${svn_cmd} $dir |
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[5432] | 114 | rev_loc=$( svn info $dir | awk '(NR == 5) {print $NF}' ) |
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[5383] | 115 | (( ${rev_loc} >= $rev )) && rev=${rev_loc} |
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| 116 | done |
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| 117 | |
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[5452] | 118 | printf "NEMOGCM rev.\n$rev\n" > mesg_02_nemogcm_${CFG_USER}_${CFG_ARCH}.txt |
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[5383] | 119 | } |
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| 120 | |
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| 121 | mesg_make() { |
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[5292] | 122 | paste -d ';' mesg_*_${CFG_USER}_${CFG_ARCH}.txt > trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt |
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[5438] | 123 | cat trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt |
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[5268] | 124 | } |
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| 125 | |
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[5383] | 126 | mesg_publish() { |
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[5268] | 127 | |
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| 128 | if [ $PUBLISH -eq 1 ]; then |
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| 129 | |
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[5424] | 130 | if [ -f ${REFE_DIR}/trusting_${CFG_USER}_${CFG_ARCH}.txt ]; then cmd='sed -n 2p'; else cmd='cat'; fi |
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[5268] | 131 | |
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[5424] | 132 | $cmd trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.txt >> ${REFE_DIR}/trusting_${CFG_USER}_${CFG_ARCH}.txt |
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| 133 | |
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[5268] | 134 | # Send mail only when FAILED |
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[5455] | 135 | if [[ ! -z $MAIL && $STATUS == 'FAILED' ]]; then |
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[5424] | 136 | cat << END_MAIL > trusting.mail |
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[5292] | 137 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
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[5268] | 138 | Dear $USER, |
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| 139 | |
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[5424] | 140 | The trusting sequence for ${CONF_REF} has failed at step: |
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| 141 | `tail -n 1 mesg_03_step_${CFG_USER}_${CFG_ARCH}.txt` |
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[5355] | 142 | Directory : ${TEST_DIR} |
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[5268] | 143 | |
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[5292] | 144 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
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[5268] | 145 | |
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| 146 | END_MAIL |
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[5424] | 147 | cat mesg_*_${CFG_USER}_${CFG_ARCH}.txt >> trusting.mail |
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| 148 | mail -s "[trusting ${CONF_REF}] FAILED" $MAIL < trusting.mail |
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[5268] | 149 | fi |
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| 150 | |
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| 151 | fi |
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| 152 | } |
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| 153 | |
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[5453] | 154 | print_step() { STEP=$1; export STEP && printf "Step.....\n$TEP\n"; } |
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[5438] | 155 | |
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[5383] | 156 | get_out() { |
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[5424] | 157 | mesg_make; mesg_publish |
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[5268] | 158 | |
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[5424] | 159 | # Save tested configuration if trusting failed |
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[5455] | 160 | if [ $STATUS == 'FAILED' ]; then |
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| 161 | cd ${TEST_DIR} |
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[5444] | 162 | touch mesg_08_inputfiles_${CFG_USER}_${CFG_ARCH}.txt mesg_09_realcputime_${CFG_USER}_${CFG_ARCH}.txt \ |
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| 163 | mesg_10_comments_${CFG_USER}_${CFG_ARCH}.txt |
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[5459] | 164 | #tar -czf ${REFE_DIR}/trusting_${DATE_STR}_${CFG_USER}_${CFG_ARCH}.tar.gz * |
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[5424] | 165 | fi |
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[5438] | 166 | |
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[5444] | 167 | printf "Status\n$STATUS\n" > mesg_03_status_${CFG_USER}_${CFG_ARCH}.txt |
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| 168 | printf "Step.....\n$STEP\n" > mesg_04_step_${CFG_USER}_${CFG_ARCH}.txt |
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[5438] | 169 | |
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[5424] | 170 | exit 1 |
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[5268] | 171 | } |
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