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% (C) Xavier Perseguers 2002 - xavier.perseguers@epfl.ch

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% TOP MATTER
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\include{texfiles/top_matter}

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% DOCUMENT
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\begin{document}

\maketitle						% generate the title

\frontmatter

\tableofcontents					% generate a table of contents
%\listoffigures					% generate a list  of figures
%\listoftables					        % generate a list of tables

\mainmatter

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% Abstract - Foreword
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\subfile{texfiles/chapters/abstract_foreword}

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% INTRODUCTION
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\subfile{texfiles/chapters/introduction}

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% CHAPTERS
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\subfile{texfiles/chapters/chap_model_basics}

\subfile{texfiles/chapters/chap_step}				% Time discretisation (time stepping strategy)

\subfile{texfiles/chapters/chap_DOM}				% Space discretisation

\subfile{texfiles/chapters/chap_TRA}				% Tracer advection/diffusion equation

\subfile{texfiles/chapters/chap_DYN}				% Dynamics : momentum equation

\subfile{texfiles/chapters/chap_SBC}				% Surface Boundary Conditions

\subfile{texfiles/chapters/chap_LBC}				% Lateral Boundary Conditions

\subfile{texfiles/chapters/chap_LDF}				% Lateral diffusion

\subfile{texfiles/chapters/chap_ZDF}				% Vertical diffusion

\subfile{texfiles/chapters/chap_DIA}				% Outputs and Diagnostics

\subfile{texfiles/chapters/chap_OBS}				% Observation operator

\subfile{texfiles/chapters/chap_ASM}				% Assimilation increments

\subfile{texfiles/chapters/chap_STO}				% Stochastic param.

\subfile{texfiles/chapters/chap_misc}				% Miscellaneous topics

\subfile{texfiles/chapters/chap_CONFIG}			% Predefined configurations

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% APPENDIX
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\appendix

%\subfile{texfiles/chapters/chap_conservation}
\subfile{texfiles/chapters/annex_A}			% generalised vertical coordinate
\subfile{texfiles/chapters/annex_B}			% diffusive operator
\subfile{texfiles/chapters/annex_C}			% Discrete invariants of the eqs.
\subfile{texfiles/chapters/annex_iso}	                  % Isoneutral diffusion using triads
\subfile{texfiles/chapters/annex_D}			% Coding rules
%\subfile{texfiles/chapters/annex_E}	                  % Notes on some on going staff (no included in the DOC)
%\subfile{texfiles/chapters/annex_Fox-Kemper}   % Notes on Fox-Kemper (no included in the DOC)
%\subfile{texfiles/chapters/annex_EVP}        	% Notes on EVP (no included in the DOC)

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% INDEX
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\addcontentsline{toc}{chapter}{Index}
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% BIBLIOGRAPHY
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