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Since March 2022 along with NEMO 4.2 release, the code development moved to a self-hosted GitLab.
This present forge is now archived and remained online for history.
Biblio.bib in branches/2017/dev_merge_2017/DOC/TexFiles/Bibliography – NEMO

source: branches/2017/dev_merge_2017/DOC/TexFiles/Bibliography/Biblio.bib @ 9115

Last change on this file since 9115 was 9115, checked in by acc, 6 years ago

Branch 2017/dev_merge_2017. Tidier version of sbcwave.F90 with associated changes in modules. References and schemes for Stokes drift parameterisations have been updated. Choices now are the original Breivik 2014 scheme and the latest Li et al 2017 scheme (which is based on the Breivik et al 2016 Phillips spectrum but with a depth averaged profile). This has been compiled but not yet tested. Also removed trailing spaces in lbc_lnk_multi_generic.h90

File size: 106.5 KB
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3
4@STRING{AP = {Academic Press}}
5
6@STRING{AREPS = {Annual Review of Earth Planetary Science}}
7
8@STRING{ARFM = {Annual Review of Fluid Mechanics}}
9
10@STRING{ASL = {Atmospheric Science Letters}}
11
12@STRING{AW = {Addison-Wesley}}
13
14@STRING{CP = {Clarendon Press}}
15
16@STRING{CD = {Clim. Dyn.}}
17
18@STRING{CUP = {Cambridge University Press}}
19
20@STRING{CSR = {Cont. Shelf Res.}}
21
22@STRING{D = {Dover Publications}}
23
24@STRING{DAO = {Dyn. Atmos. Ocean}}
25
26@STRING{DSR = {Deep-Sea Res.}}
27
28@STRING{E = {Eyrolles}}
29
30@STRING{EFM ={Environ. Fluid Mech.}}
31
32@STRING{GRL = {Geophys. Res. Let.}}
33
34@STRING{I = {Interscience}}
35
36@STRING{JAOT = {J. Atmos. Ocean Tech.}}
37
38@STRING{JAS = {J. Atmos. Sc.}}
39
40@STRING{JC = {J. Climate}}
41
42@STRING{JCP = {J. Comput. Phys.}}
43
44@STRING{JFM = {J. Fluid Mech.}}
45
46@STRING{JGR = {J. Geophys. Res}}
47
48@STRING{JHUP = {The Johns Hopkins University Press}}
49
50@STRING{JMR = {J. Mar. Res.}}
51
52@STRING{JMS = {J. Mar. Sys.}}
53
54@STRING{JMSJ = {J. Met. Soc. Japan}}
55
56@STRING{JPO = {J. Phys. Oceanogr.}}
57
58@STRING{JSC = {J. Supercomputing.}}
59
60@STRING{JWS = {John Wiley and Sons}}
61
62@STRING{M = {Macmillan}}
63
64@STRING{MGH = {McGraw-Hill}}
65
66@STRING{MWR = {Mon. Wea. Rev.}}
67
68@STRING{Nature = {Nat.}}
69
70@STRING{NH = {North-Holland}}
71
72@STRING{Ocean = {Oceanology}}
73
74@STRING{OD = {Ocean Dyn.}}
75
76@STRING{OM = {Ocean Modelling}}
77
78@STRING{OS = {Ocean Sc.}}
79
80@STRING{OUP = {Oxford University Press}}
81
82@STRING{PH = {Prentice-Hall}}
83
84@STRING{PO = {Prog. Oceangr.}}
85
86@STRING{PP = {Pergamon Press}}
87
88@STRING{PRSL = {Proceedings of the Royal Society of London}}
89
90@STRING{QJRMS = {Quart. J. Roy. Meteor. Soc.}}
91
92@STRING{Recherche = {La Recherche}}
93
94@STRING{RGSP = {Rev. Geophys. Space Phys.}}
95
96@STRING{Science = {Science}}
97
98@STRING{SV = {Springer-Verlag}}
99
100@STRING{Tellus = {Tellus}}
101
102
103@ARTICLE{Adcroft_Campin_OM04,
104  author = {A. Adcroft and J.-M. Campin},
105  title = {Re-scaled height coordinates for accurate representation of free-surface flows in ocean circulation models},
106  journal = OM,
107  year = {2004},
108  volume = {7},
109  pages = {269--284},
110  doi = {10.1016/j.ocemod.2003.09.003},
111  url = {http://dx.doi.org/10.1016/j.ocemod.2003.09.003}
112}
113
114@ARTICLE{Arakawa1966,
115  author = {A. Arakawa},
116  title = {Computational design for long term numerical integration of the equations
117    of fluid motion, two-dimensional incompressible flow, Part. I.},
118  journal = JCP,
119  year = {1966},
120  volume = {I},
121  pages = {119--149}
122}
123
124@ARTICLE{Arakawa_Hsu_MWR90,
125  author = {A. Arakawa and Y.-J. G. Hsu},
126  title = {Energy Conserving and Potential-Enstrophy Dissipating Schemes for the Shallow Water Equations},
127  journal = MWR,
128  year = {1990},
129  volume = {118},  number = {10},
130  pages = {1960--1969},
131}
132
133@ARTICLE{Arakawa_Lamb_MWR81,
134  author = {Arakawa, Akio and Lamb, Vivian R.},
135  title = {A Potential Enstrophy and Energy Conserving Scheme for the Shallow
136           Water Equations},
137  journal = MWR,
138  year = {1981},
139  volume = {109},  number = {1},
140  pages = {18--36}
141}
142
143@ARTICLE{Arbic2010,
144  author = {Arbic, Wallcraft, Metzger},
145  title = {Concurrent simulation of the eddying general circulation and tides in a global ocean model},
146  journal = OM,
147  year = {2010},
148  volume = {32},  number = {3-4},
149  pages = {175-187}
150
151@ARTICLE{Arhan2006,
152  author = {M. Arhan and A.M. Treguier and B. Bourles and S. Michel},
153  title = {Diagnosing the annual cycle of the Equatorial Undercurrent in the
154   Atlantic Ocean from a general circulation model},
155  journal = JPO,
156  year = {2006},
157  volume = {36},
158  pages = {1502--1522}
159}
160
161@ARTICLE{Artale_al_JGR02,
162  author={V. Artale and D. Iudicone and R. Santoleri and V. Rupolo and S. Marullo
163          and F. {D'O}rtenzio},
164  title={Role of surface fluxes in ocean general circulation models using satellite
165          sea surface temperature: Validation of and sensitivity to the forcing
166          frequency of the Mediterranean thermohaline circulation},
167  journal=JGR,
168  year={2002},
169  volume={107},
170  pages={1978-2012},
171  doi = {10.1029/2000JC000452},
172}
173
174@ARTICLE{ASSELIN_MWR72,
175  author = {R. Asselin},
176  title = {Frequency Filter for Time Integrations},
177  journal = MWR,
178  year = {1972},
179  volume = {100},  number = {6},
180  pages = {487--490}
181}
182
183@ARTICLE{Atmadipoera_al_DSR09,
184  author = {A. Atmadipoera and R. Molcard and G. Madec and S.Wijffels and J.
185   Sprintall and A. Koch-Larrouy and I. Jaya and A. Supangat},
186  title = {Characteristics and Variability of the Indonesian Throughflow Water
187   at the Outflow Straits},
188  journal = DSR,
189  year = {2009},
190  volume = {56},  number = {11},
191  pages = {1942--1954},
192  doi = {10.1016/j.dsr.2009.06.004},
193  url = {http://dx.doi.org/10.1016/j.dsr.2009.06.004}
194}
195
196@ARTICLE{Aumont_al_GBC99,
197  author = {O. Aumont and P. Monfray and J. C. Orr and G. Madec and E. Maier-Reimer},
198  title = {Nutrient trapping in the equatorial Pacific: The ocean circulation solution},
199  journal = GBC,
200  year = {1999},
201  volume = {13},
202  pages = {351--369}
203}
204
205@ARTICLE{Aumont_al_CD98,
206  author = {O. Aumont and J.C. Orr and D. Jamous and P. Monfray and O. Marti and G. Madec},
207  title = {A degradation approach to accelerate simulations to steady state
208   in a 3-D tracer transport model of the global ocean},
209  journal = CD,
210  year = {1998},
211  volume = {14},
212  pages = {101--116}
213}
214
215@ARTICLE{Axell_JGR02,
216  author = {L. B. Axell},
217  title = {Wind-driven internal waves and Langmuir circulations in a numerical ocean model of the southern Baltic Sea},
218  journal = JGR,
219  year = {2002},
220  volume = {107},
221  doi = {10.1029/2001JC000922},
222  url = {http://dx.doi.org/10.1029/2001JC000922}
223}
224
225@ARTICLE{Axell_Liungman_EFM01,
226  author = {L. B. Axell and O. Liungman},
227  title = {A one-equation turbulence model for geophysical applications:
228  Comparison with data and the k-$\epsilon$ model},
229  journal = EFM,
230  year = {2001},
231  volume = {1}, pages = {71--106},
232  doi = {10.1029/2001JC000922},
233  url = {http://dx.doi.org/10.1029/2001JC000922}
234}
235
236@ARTICLE{Ayina_al_JC06,
237  author = {L.-H. Ayina and A. Bentamy and A. Munes-Mestaz and G. Madec},
238  title = {The Impact of Satellite Winds and Latent Heat Fluxes in a Numerical
239   Simulation of the Tropical Pacific Ocean},
240  journal = JC,
241  year = {2006},
242  volume = {19},
243  pages = {5889--5902}
244}
245
246@ARTICLE{Barnier_al_OD06,
247  author = {B. Barnier and G. Madec and T. Penduff and J.-M. Molines and A.-M.
248   Treguier and J. Le Sommer and A. Beckmann and A. Biastoch and C. Boning
249   and J. Dengg and C. Derval and E. Durand and S. Gulev and
250   E. Remy and C. Talandier and S. Theetten and M. Maltrud and J. McClean and B. De Cuevas},
251  title = {Impact of partial steps and momentum advection schemes in a global
252   ocean circulation model at eddy-permitting resolution.},
253  journal = OD,
254  year = {2006},
255  volume = {56},
256  pages = {543--567},
257  doi = {10.1007/s10236-006-0082-1},
258  url = {http://dx.doi.org/10.1007/s10236-006-0082-1}
259}
260
261@INCOLLECTION{Barnier1996,
262  author = {B. Barnier and P. Marchesiello and A.P. de Miranda},
263  title = {Modeling the ocean circulation in the South Atlantic: A strategy for dealing with open boundaries},
264  booktitle = {The South Atlantic: Present and Past Circulation},
265  publisher = {Springer-Verlag, Berlin},
266  year = {1996},
267  editor = {G.Wefer and W.H. Berger and G Siedler and D. Webb},
268  pages = {289-304}
269}
270
271@ARTICLE{Barnier1998,
272  author = {B. Barnier and P. Marchesiello and A. P. de Miranda and J.M. Molines
273   and M. Coulibaly},
274  title = {A sigma-coordinate primitive equation model for studying the circulation
275   in the South Atlantic I, Model configuration with error estimates},
276  journal = DSR,
277  year = {1998},
278  volume = {45},
279  pages = {543--572}
280}
281
282@ARTICLE{Barthelet_al_CRAS98,
283  author = {P. Barthelet and S. Bony and P. Braconnot and A. Braum and D. Cariolle
284   and E. Cohen-Solal and J.-L. Dufresne and P. Delecluse and M. D\'{e}qu\'{e}
285   and L. Fairhead and M.-A. Filiberti and M. Forichon and J.-Y. Grandpeix
286   and E. Guilyardi and M.-N. Houssais and M. Imbard and H. Le Treut
287   and C. Lévy and Z.X. Li and G. Madec and P. Marquet and O. Marti
288   and S. Planton and L. Terray and O. Thual and S. Valcke},
289  title = {Global coupled simulations of climate change due to increased atmospheric CO2 concentration},
290  journal = {C. R. Acad. Sci Paris},
291  year = {1998},
292  volume = {326},
293  pages = {677--684}
294}
295
296@ARTICLE{Beckmann2003,
297  author = {A. Beckmann and H. Goosse},
298  title = {A parameterization of ice shelf-ocean interaction for climate models},
299  journal = OM,
300  year = {2003},
301  volume = {5},
302  pages = {157--170}
303}
304
305@ARTICLE{Beckmann1998,
306  author = {A. Beckmann},
307  title = {The representation of bottom boundary layer processes in numerical
308   ocean circulation models.},
309  journal = {Ocean modelling and parameterization, E. P. Chassignet and J. Verron
310   (eds.), NATO Science Series, Kluwer Academic Publishers},
311  year = {1998}
312}
313
314@ARTICLE{Beckmann_Doscher1997,
315  author = {A. Beckmann and R. D\"{o}scher},
316  title = {A method for improved representation of dense water spreading over
317   topography in geopotential-coordinate models},
318  journal = JPO,
319  year = {1997},
320  volume = {27},
321  pages = {581--591}
322}
323
324@ARTICLE{Beckmann1993,
325  author = {A. Beckmann and D. B. Haidvogel},
326  title = {Numerical Simulation of Flow around a Tall Isolated Seamount.
327   Part I - Problem Formulation and Model Accuracy},
328  journal = JPO,
329  year = {1993},
330  volume = {23},  number = {8},
331  pages = {1736--1753}
332}
333
334@ARTICLE{Bernie_al_CD07,
335  author = {D. Bernie and E. Guilyardi and G. Madec and J. M. Slingo and S. J. Woolnough},
336  title = {Impact of resolving the diurnal cycle in an ocean--atmosphere GCM. Part 1: a diurnally forced OGCM},
337  journal = CD,
338  year = {2007},
339  volume = {29},  number = {6},
340  pages = {575--590}
341}
342
343@ARTICLE{Bernie_al_CD08,
344  author = {D. Bernie and E. Guilyardi and G. Madec and J. M. Slingo and S. J. Woolnough},
345  title = {Impact of resolving the diurnal cycle in an ocean--atmosphere GCM. Part 2: A diurnally coupled CGCM},
346  journal = CD,
347  year = {2008},
348  volume = {31},  number = {7},
349  pages = {909--925},
350  doi = {10.1007/s00382-008-0429-z},
351  url = {http://dx.doi.org/10.1007/s00382-008-0429-z}
352}
353
354@ARTICLE{Bernie_al_JC05,
355  author = {D. J. Bernie and S. J. Woolnough and J. M. Slingo and E. Guilyardi},
356  title = {Modelling diurnal and intraseasonal variability of the ocean mixed
357   layer},
358  journal = JC,
359  year = {2005},
360  volume = {18},  number = {8},
361  pages = {1190--1200}
362}
363
364@ARTICLE{Bessiere_al_GRL08,
365  author = {L. Bessi\'{e}res and G. Madec and F. Lyard},
366  title = {Global Tidal Residual Mean Circulation: Does it Affect a Climate OGCM?},
367  journal = GRL,
368  year = {2008},
369  volume = {35},
370  pages = {L03609},
371  doi = {10.1029/2007GL032644},
372  url = {http://dx.doi.org/10.1029/2007GL032644}
373}
374
375@ARTICLE{Biastoch_al_JC08,
376  author = {A. Biastoch and C. W. Böning and J. Getzlaff and J.-M. Molines and G. Madec},
377  title = {Causes of interannual – decadal variability in the meridional overturning
378   circulation of the mid-latitude North Atlantic Ocean},
379  journal = JC,
380  year = {2008},
381  volume = {21},  number = {24},
382  pages = {6599-6615},
383  doi = {10.1175/2008JCLI2404.1},
384  url = {http://dx.doi.org/10.1175/2008JCLI2404.1}
385}
386
387@ARTICLE{Bignami_al_JGR95,
388  author = {F. Bignami and S. Marullo and R. Santoleri and M. E. Schiano},
389  title = {Longwave radiation budget in the Mediterranean Sea},
390  journal = JGR,
391  year = {1995},
392  volume = {100},  number = {C2},
393  pages = {2501--2514},
394  doi = {10.1029/94JC02496},
395}
396
397@ARTICLE{Blanke_al_JPO99,
398  author = {B. Blanke and M. Arhan and G. Madec and S. Roche},
399  title = {Warm Water Paths in the Equatorial Atlantic as Diagnosed with a General Circulation Model},
400  journal = JPO,
401  year = {1999},
402  volume = {29},  number = {11},
403  pages = {2753-2768}
404}
405
406@ARTICLE{Blanke1993,
407  author = {B. Blanke and P. Delecluse},
408  title = {Low frequency variability of the tropical Atlantic ocean simulated
409   by a general circulation model with mixed layer physics},
410  journal = JPO,
411  year = {1993},
412  volume = {23},
413  pages = {1363--1388}
414}
415
416@ARTICLE{blanke_al_JC97,
417  author = {B. Blanke and J. D. Neelin and D. Gutzler},
418  title = {Estimating the effect of stochastic wind forcing on ENSO irregularity},
419  journal = JC,
420  year = {1997},
421  volume = {10},
422  pages = {1473--1486}
423}
424
425@ARTICLE{Blanke_Raynaud_JPO97,
426  author = {B. Blanke and S. Raynaud},
427  title = {Kinematics of the Pacific Equatorial Undercurrent: An Eulerian and
428   Lagrangian Approach from GCM Results},
429  journal = JPO,
430  year = {1997},
431  volume = {27},  number = {6},
432  pages = {1038--1053}
433}
434
435@ARTICLE{Blanke_al_JPO01,
436  author = {B. Blanke and S. Speich and G. Madec and K. Döös},
437  title = {A global Diagnostic of interocean mass transfers},
438  journal = JPO,
439  year = {2001},
440  volume = {31},  number = {6},
441  pages = {1623--1632}
442}
443
444@ARTICLE{Blanke_al_GRL02,
445  author = {B. Blanke and S. Speich and G. Madec and R. Maug\'{e}},
446  title = {A global diagnostic of interior ocean ventilation},
447  journal = GRL,
448  year = {2002},
449  volume = {29},  number = {8},
450  pages = {1081--1084}
451}
452
453@ARTICLE{Blayo2005,
454  author = {E. Blayo and L. Debreu},
455  title = {Revisiting open boundary conditions from the point of view of characteristic
456   variables},
457  journal = OM,
458  year = {2005},
459  volume = {9},
460  pages = {231--252}
461}
462
463@ARTICLE{Bloom_al_MWR96,
464  author = {S. C. Bloom and L. L. Takacs and A. M. Da Silva and D. Ledvina},
465  title = {Data assimilation using incremental analysis updates},
466  journal = MWR,
467  year = {1996},
468  volume = {124},
469  pages = {1256--1271}
470}
471
472@ARTICLE{Bopp_al_GBC01,
473  author = {L. Bopp and P. Monfray and O. Aumont and J.-L. Dufresne and H. Le Treut
474    and G. Madec and L. Terray and J.C. Orr},
475  title = {Potential impact of climate change on marine export production},
476  journal = GBC,
477  year = {2001},
478  volume = {15},  number = {1},
479  pages = {81--101}
480}
481
482@article{bouffard_Boegman_DAO2013,
483   author = {D. Bouffard and L. Boegman},
484   title = {A diapycnal diffusivity model for stratified environmental flows},
485   volume = {61-62},
486   issn = {03770265},
487   url = {http://dx.doi.org/10.1016/j.dynatmoce.2013.02.002},
488   doi = {10.1016/j.dynatmoce.2013.02.002},
489   journal = DAO,
490   year = {2013},
491   pages = {14--34},
492}
493
494@ARTICLE{Bougeault1989,
495  author = {P. Bougeault and P. Lacarrere},
496  title = {Parameterization of Orography-Induced Turbulence in a Mesobeta--Scale
497   Model},
498  journal = MWR,
499  year = {1989},
500  volume = {117},  number = {8},
501  pages = {1872--1890},
502}
503
504@ARTICLE{Bouillon_al_OM09,
505  author = {S. Bouillon and M.A. Morales Maqueda and V. Legat and T. Fichefet},
506  title = {An Elastic-Viscous-Plastic Sea Ice Model formulated on Arakawa B and C Grids},
507  journal = OM,
508  year = {2009},
509  volume = {27},
510  pages = {174--184},
511  doi = {10.1016/j.ocemod.2009.01.004},
512  url = {http://dx.doi.org/10.1016/j.ocemod.2009.01.004}
513}
514
515@ARTICLE{Boulanger_al_GRL01,
516  author = {J.-P. Boulanger and E. Durand and J.-P. Duvel and C. Menkes and P.
517   Delecluse and M. Imbard and M. Lengaigne and G. Madec and S. Masson},
518  title = {Role of non-linear oceanic processes in the response to westerly
519   wind events: new implications for the 1997 El Niño onset},
520  journal = GRL,
521  year = {2001},
522  volume = {28},  number = {8},
523  pages = {1603--1606}
524}
525
526@article{Brankart_OM2013,
527author = "J.-M. Brankart",
528title = "Impact of uncertainties in the horizontal density gradient upon low resolution global ocean modelling ",
529journal = OM,
530year = "2013",
531volume = "66", pages = "64--76",
532issn = "1463-5003",
533doi = "http://dx.doi.org/10.1016/j.ocemod.2013.02.004",
534url = "http://www.sciencedirect.com/science/article/pii/S1463500313000309",
535}
536
537@Article{Brankart_al_GMD2015,
538AUTHOR = {Brankart, J.-M. and Candille, G. and Garnier, F. and Calone, C. and Melet, A. and Bouttier, P.-A. and Brasseur, P. and Verron, J.},
539TITLE = {A generic approach to explicit simulation of uncertainty in the NEMO ocean model},
540JOURNAL = {Geoscientific Model Development},
541VOLUME = {8},
542YEAR = {2015},
543NUMBER = {5},
544PAGES = {1285--1297},
545URL = {http://www.geosci-model-dev.net/8/1285/2015/},
546DOI = {10.5194/gmd-8-1285-2015}
547}
548
549@ARTICLE{Breivik_al_OM2016,
550   AUTHOR = {{\O}yvind Breivik and Jean-Raymond Bidlot and Peter A.E.M. Janssen},
551   YEAR = {2016},
552   TITLE = "{A Stokes drift approximation based on the Phillips spectrum}",
553   JOURNAL = {OM},
554   VOLUME = {100},
555   DOI = {10.1016/j.ocemod.2016.01.005},
556   PAGES = {49--56, arXiv:1601.08092}
557}
558
559@ARTICLE{Brodeau_al_OM09,
560  author = {L. Brodeau and B. Barnier and A.-M. Tr\'{e}guier and T. Penduff and S. Gulev},
561  title = {An ERA40-based atmospheric forcing for global ocean circulation models},
562  journal = OM,
563  year = {2009},
564  volume = {31},  number = {3-4},
565  pages = {88--104}
566}
567
568
569@ARTICLE{de_Boyer_Montegut_al_JGR04,
570  author = {C. de Boyer Mont\'{e}gut and G. Madec and A.S. Fischer and A. Lazar and D. Iudicone},
571  title = {Mixed layer depth over the global ocean: An examination of profile
572   data and a profile-based climatology},
573  journal = JGR,
574  year = {2004},
575  volume = {109},
576  pages = {C12003},
577  doi = {10.1029/2004JC002378},
578  url = {http://dx.doi.org/10.1029/2004JC002378}
579}
580
581@ARTICLE{de_Boyer_Montegut_al_JC07,
582  author = {C. de Boyer Mont\'{e}gut and J. Vialard and F. Durand and G. Madec},
583  title = {Simulated seasonal and interannual variability of mixed layer heat
584   budget in the northern Indian Ocean},
585  journal = JC,
586  year = {2007},
587  volume = {20},  number = {13},
588  pages = {3249--3268}
589}
590
591@ARTICLE{Brown_Campana_MWR78,
592  author = {J. A. Brown and K. A. Campana},
593  title = {An Economical Time-Differencing System for Numerical Weather Prediction},
594  journal = MWR,
595  year = {1978},
596  volume = {106},  number = {8},
597  pages = {1125--1136},
598}
599
600@ARTICLE{Bryan1997,
601  author = {K. Bryan},
602  title = {A Numerical Method for the Study of the Circulation of the World Ocean},
603  journal = JCP,
604  year = {1997},
605  volume = {135},  number = {2}
606}
607
608@ARTICLE{Bryan1984,
609  author = {K. Bryan},
610  title = {Accelerating the convergence to equilibrium of ocean-climate models},
611  journal = JPO,
612  year = {1984},
613  volume = {14},
614  pages = {666--673}
615}
616
617@ARTICLE{Bryden1973,
618  author = {H. L. Bryden},
619  title = {New polynomials for thermal expansion, adiabatic temperature gradient
620    and potential temperature of sea water},
621  journal = DSR,
622  year = {1973},
623  volume = {20},
624  pages = {401--408}
625}
626
627@ARTICLE{Burchard_OM02,
628  author = {Hans Burchard},
629  title = {Energy-conserving discretisation of turbulent shear and buoyancy
630   production},
631  journal = OM,
632  year = {2002},
633  volume = {4},  number = {3-4},
634  pages = {347--361},
635  doi = {10.1016/S1463-5003(02)00009-4},
636  url = {http://dx.doi.org/10.1016/S1463-5003(02)00009-4}
637}
638
639@ARTICLE{Campin2004,
640  author = {J.-M. Campin and A. Adcroft and C. Hill and J. Marshall},
641  title = {Conservation of properties in a free-surface model},
642  journal = OM,
643  year = {2004},
644  volume = {6},  number = {3-4},
645  pages = {221--244}
646}
647
648@ARTICLE{Campin_al_OM08,
649  author = {J.-M. Campin and J. Marshall and D. Ferreira},
650  title = {Sea ice-ocean coupling using a rescaled vertical coordinate z*},
651  journal = OM,
652  year = {2008},
653  volume = {24},  number = {1-2},
654  pages = {1--14},
655  doi = {10.1016/j.ocemod.2008.05.005},
656  url = {http://dx.doi.org/10.1016/j.ocemod.2008.05.005}
657}
658
659@ARTICLE{Campin_Goosse_Tel99,
660  author = {J.-M. Campin and H. Goosse},
661  title = {Parameterization of density-driven downsloping flow for a coarse-resolution ocean model in z-coordinate},
662  journal = {Tellus},
663  year = {1999},
664  volume = {51},
665  pages = {412--430}
666}
667
668@ARTICLE{Carrere_Lyard_GRL03,
669  author = {L. Carr\`{e}re and F. Lyard},
670  title = {Modelling the barotropic response of the global ocean to atmospheric
671   wind and pressure forcing - comparisons with observations},
672  journal = GRL,
673  year = {2003},
674  volume = {30},  number = {6},
675  doi = {10.1029/2002GL016473},
676  url = {http://dx.doi.org/10.1029/2002GL016473}
677}
678
679@ARTICLE{Castellari_al_JMS1998,
680  author = {S> Castellari and  N. Pinardi and K. Leaman },
681  title = {A model study of air-sea interactions in the Mediterranean Sea.},
682  journal = JMS,
683  year = {1998},
684  volume = {18},
685  pages = {89--114}
686}
687
688@TECHREPORT{Chanut2005,
689 author = {J. Chanut},
690 title = {Nesting code for NEMO},
691 year = {2005},
692 institution = {European Union: Marine Environment and Security for the European Area (MERSEA) Integrated Project},
693note = {MERSEA-WP09-MERCA-TASK-9.1.1}
694}
695
696@ARTICLE{Chassignet_al_JPO03,
697  author = {Eric P. Chassignet and Linda T. Smith and George R. Halliwell},
698  title = {North Atlantic Simulations with the Hybrid Coordinate Ocean Model
699   (HYCOM): Impact of the Vertical Coordinate Choice, Reference Pressure, and Thermobaricity},
700  journal = JPO,
701  year = {2003},
702  volume = {33},
703  pages = {2504-2526}
704}
705
706@ARTICLE{Covey_al_CD00,
707  author = {C. Covey and A. Abe-Ouchi and G.J. Boer and B.A. Boville and U. Cubasch
708   and L. Fairhead and G.M. Flato and H. Gordon and E. Guilyardi and X. Jiang
709   and T.C. Johns and H. Le Treut and G. Madec and G.A. Meehl and R. Miller
710   and A. Noda and S. B. Power and E. Roeckner and G. Russell and E.K. Schneider
711   and R.J. Stouffer and L. Terray and J.-S. von Storch},
712  title = {The seasonal cycle in coupled ocean-atmosphere general circulation models},
713  journal = CD,
714  year = {2000},
715  volume = {16},
716  pages = {775--787}
717}
718
719@ARTICLE{Canuto_2001,
720  author = {V. M. Canuto and A. Howard and Y. Cheng and M. S. Dubovikov},
721  title = {Ocean turbulence. PartI: One-point closure model-momentum and heat vertical diffusivities},
722  journal = JPO,
723  year = {2001},
724  volume = {24},  number = {12},
725  pages = {2546--2559}
726}
727
728@ARTICLE{Cox1987,
729  author = {M. Cox},
730  title = {Isopycnal diffusion in a z-coordinate ocean model},
731  journal = OM,
732  year = {1987},
733  volume = {74},
734  pages = {1--9}
735}
736
737@ARTICLE{Craig_Banner_JPO94,
738  author = {P. D. Craig and M. L. Banner},
739  title = {Modeling wave-enhanced turbulence in the ocean surface layer},
740  journal = JPO,
741  year = {1994},
742  volume = {24},  number = {12},
743  pages = {2546--2559}
744}
745
746@ARTICLE{Craik_Leibovich_JFM76,
747  author = {A. D. D. Craik and S. Leibovich},
748  title = {A rational model for Langmuir circulations},
749  journal = JFM,
750  year = {1976},
751  volume = {73},
752  pages = {401--426}
753}
754
755@ARTICLE{Cravatte_al_OM07,
756  author = {Cravatte, S. and G. Madec and T. Izumo and C. Menkes and A. Bozec},
757  title = {Progress in the 3-D circulation of the eastern equatorial Pacific
758   in a climate ocean model},
759  journal = OM,
760  year = {2007},
761  volume = {17},  number = {1},
762  pages = {28--48}
763}
764
765@BOOK{Daley_Barker_Bk01,
766  author = {R. Daley and E. Barker},
767  title = {NAVDAS Source Book 2001},
768  publisher = {NRL/PU/7530-01-441, Available from the Naval Research Laboratory, Monterey, CA., 93943-5502},
769  year = {2001},
770  pages = {163pp}
771}
772
773@ARTICLE{D'Alessio_al_JPO98,
774  author = {S. J. D. D'Alessio and K. Abdella and N. A. McFarlane},
775  title = {A new second-order turbulence closure scheme for modeling the oceanic mixed layer},
776  journal = JPO,
777  year = {1998},
778  volume = {28},
779  pages = {1624--1641}
780}
781
782
783@ARTICLE{Danabasoglu_al_2008,
784   author = {G. Danabasoglu and R. Ferrari and J. C. McWilliams},
785   title = {Sensitivity of an ocean general circulation model to a parameterization of near-surface eddy fluxes},
786   volume = {21},
787   year = {2008},
788   doi = {10.1175/2007JCLI1508.1},
789   journal = {J. Climate},
790   pages = {1192--1208},
791        url = {http://dx.doi.org/10.1175/2007JCLI1508.1}
792}
793@ARTICLE{Dandonneau_al_S04,
794  author = {Y. Dandonneau and C. Menkes and T. Gorgues and G. Madec},
795  title = {Reply to Peter Killworth, 2004 : '' Comment on the Oceanic Rossby
796   Waves acting as a “Hay Rake” for ecosystem by-products ''},
797  journal = {Science},
798  year = {2004},
799  volume = {304},
800  pages = {390}
801}
802
803@ARTICLE{Davies_QJRMS76,
804 author = {H.C. Davies},
805 title = {A lateral boundary formulation for multi-level prediction models},
806 year = {1976},
807 journal = QJRMS,
808 volume = {102},
809 pages = {405--418}
810}
811
812@ARTICLE{Debreu_al_CG2008,
813  author = {L. Debreu and C. Vouland and E. Blayo},
814  title = {AGRIF: Adaptive Grid Refinement In Fortran},
815  journal = {Computers and Geosciences},
816  year = {2008},
817  volume = {34},
818  pages = {8--13}
819}
820
821@article{de_lavergne_JPO2016_mixing,
822   author = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G. Nurser and A. C. Naveira Garabato },
823   title = {On Antarctic Bottom Water consumption in the abyssal ocean},
824   issn = {0022-3670},
825   url = {http://dx.doi.org/10.1175/JPO-D-14-0201.1},
826   doi = {10.1175/JPO-D-14-0201.1},
827   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.},
828   journal = {Journal of Physical Oceanography},
829   year = {2016},
830   volume = {46},  pages = {635-–661}
831}
832
833@article{de_lavergne_JPO2016_efficiency,
834   author = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G. Nurser and A. C. Naveira Garabato },
835   title = {The impact of a variable mixing efficiency on the abyssal overturning},
836   issn = {0022-3670},
837   url = {http://dx.doi.org//10.1175/JPO-D-14-0259.1},
838   doi = {10.1175/JPO-D-14-0259.1},
839   abstract = {In studies of ocean mixing, it is generally assumed that small-scale turbulent overturns lose 15-20 \% of their energy in eroding the background stratification. Accumulating evidence that this energy fraction, or mixing efficiency Rf, significantly varies depending on flow properties challenges this assumption, however. Here, we examine the implications of a varying mixing efficiency for ocean energetics and deep water mass transformation. Combining current parameterizations of internal wave-driven mixing with a recent model expressing Rf as a function of a turbulence intensity parameter Reb = εν/νN2, we show that accounting for reduced mixing efficiencies in regions of weak stratification or energetic turbulence (high Reb) strongly limits the ability of breaking internal waves to supply oceanic potential energy and drive abyssal upwelling. Moving from a fixed Rf = 1/6 to a variable efficiency Rf(Reb) causes Antarctic Bottom Water upwelling induced by locally-dissipating internal tides and lee waves to fall from 9 to 4 Sv, and the corresponding potential energy source to plunge from 97 to 44 GW. When adding the contribution of remotely-dissipating internal tides under idealized distributions of energy dissipation, the total rate of Antarctic Bottom Water upwelling is reduced by about a factor of 2, reaching 5-15 Sv compared to 10-33 Sv for a fixed efficiency. Our results suggest that distributed mixing, overflow-related boundary processes and geothermal heating are more effective in consuming abyssal waters than topographically-enhanced mixing by breaking internal waves. Our calculations also point to the importance of accurately constraining Rf(Reb) and including the effect in ocean models.},
840   journal = {Journal of Physical Oceanography},
841   year = {2016},
842   volume = {46},  pages = {663-–681}
843}
844
845@ARTICLE{Delecluse_Madec_Bk00,
846  author = {P. Delecluse and G. Madec},
847  title = {Ocean modelling and the role of the ocean in the climate system},
848  journal = {In \textit{Modeling the Earth's Climate and its Variability}, Les
849   Houches, Session, LXVII 1997,
850   Eds. W. R. Holland, S. Joussaume and F. David, Elsevier Science},
851  year = {2000},
852  pages = {237--313}
853}
854
855@PHDTHESIS{Demange_PhD2014,
856  author = {J. Demange},
857  title = {Sch\'{e}́mas num\'{e}́riques d'advection et de propagation d’ondes de gravit\'{e}́
858           dans les mod\`{e}les de circulation oc\'{e}́anique.},
859  school = {Doctorat es Applied Mathematiques, Grenoble University, France},
860  year = {2014},
861  pages = {138pp}
862}
863
864@ARTICLE{Dobricic_al_OS07,
865  author = {S. Dobricic and N. Pinardi and M. Adani and M. Tonani and
866            C. Fratianni and A. Bonazzi and V. Fernandez},
867  title = {Daily oceanographic analysis by the Mediterranean basin scale
868           assimilation system},
869  journal = OS,
870  year = {2007},
871  volume = {3},
872  pages = {149-157}
873}
874
875@ARTICLE{Doney_al_GBC04,
876  author = {S.C. Doney and K. Lindsay and K. Caldeira and J.−M. Campin and H.
877   Drange and J.−C. Dutay and M. Follows and Y. Gao and A. Gnanadesikan
878   and N. Gruber and A. Ishida and F. Joos and G. Madec and E. Maier−Reimer
879   and J.C. Marshall and R.J. Matear and P. Monfray and A. Mouchet and
880   R. Najjar and J.C. Orr and G.−K. Plattner and J. Sarmiento and R.
881   Schlitzer and R. Slater and I.J. Totterdell and M.−F. Weirig and
882   Y. Yamanaka and A. Yoo},
883  title = {Evaluating global ocean carbon models: the importance of realistic
884   physics},
885  journal = GBC,
886  year = {2004},
887  volume = {18},
888  pages = {GB3017},
889  doi = {10.1029/2003GB002150},
890  url = {http://dx.doi.org/10.1029/2003GB002150}
891}
892
893@ARTICLE{Dorscher_Beckmann_JAOT00,
894  author = {R. D\"{o}scher and A. Beckmann},
895  title = {Effects of a Bottom Boundary Layer Parameterization in a Coarse-Resolution
896   Model of the North Atlantic Ocean},
897  journal = JAOT,
898  year = {2000},
899  volume = {17},
900  pages = {698--707}
901}
902
903@ARTICLE{Drijfhout_JPO94,
904  author = {S. S. Drijfhout},
905  title = {Heat transport by Mesoscale Eddies in an Ocean Circulation Model},
906  journal = JPO,
907  year = {1994},
908  volume = {24},
909  pages = {353--369}
910}
911
912@ARTICLE{Dukowicz1994,
913  author = {J. K. Dukowicz and R. D. Smith},
914  title = {Implicit free-surface method for the Bryan-Cox-Semtner ocean model},
915  journal = JGR,
916  year = {1994},
917  volume = {99},
918  pages = {7991--8014}
919}
920
921@ARTICLE{Durand_al_JC07,
922  author = {F. Durand and D. Shankar and C. de Boyer Mont\'{e}gut and S.S.C.
923   Shenoi and B. Blanke and G. Madec},
924  title = {Modeling the barrier-layer formation in the South-Eastern Arabian
925   Sea},
926  journal = JC,
927  year = {2007},
928  volume = {20},  number = {10},
929  pages = {2109--2120}
930}
931
932@ARTICLE{Durand_al_GRL04,
933  author = {F. Durand and S. R. Shetye and J. Vialard and D. Shankar and S.S.C.
934   Shenoi and C. Eth\'{e} and G. Madec},
935  title = {Impact of temperature inversions on SST evolution in the South−Eastern
936   Arabian Sea during the pre−summer monsoon season},
937  journal = GRL,
938  year = {2004},
939  volume = {31},
940  pages = {L01305},
941  doi = {10.1029/2003GL018906},
942  url = {http://dx.doi.org/10.1029/2003GL018906}
943}
944
945@INCOLLECTION{Durran2001,
946  author = {D.R. Durran },
947  title = {Open boundary conditions: fact and fiction},
948  booktitle = {Advances in Mathematical Modelling of Atmosphere and Ocean Dynamics},
949  publisher = {Kluwer Academic Publishers},
950  year = {2001},
951  editor = {P.F. Hodnett}
952}
953
954@ARTICLE{Dutay_al_OM02,
955  author = {J.-C. Dutay and J.L. Bullister and S.C. Doney and J.C. Orr and R.
956   Najjar and K. Caldeira and J.-M. Campin and H. Drange and M. Follows
957   and Y. Gao and N. Gruber and M. W. Hecht and A. Ishida and F. Joos
958   and K. Lindsay and G. Madec and E. Maier-Reimer and J.C. Mashall
959   and R. J. Matear and P. Monfray and G.-K. Plattner and J. Sarmiento
960   and R. Schlitzer and R. Slater and I.J. Totterdell and M.-F. Weirig
961   and Y. Yamanaka and A. Tool},
962  title = {Evaluation of ocean model ventilation with CFC-11: comparison of
963   13 global ocean models},
964  journal = OM,
965  year = {2002},
966  volume = {4},
967  pages = {89--120}
968}
969
970@ARTICLE{Dutay_al_EFM09,
971  author = {J.-C. Dutay and J. Emile-Geay and D. Iudicone and P. Jean-Baptiste
972   and G. Madec and C. Carouge},
973  title = {Helium Isotopic Constraints on Simulated Ocean Circulations - Implications
974   for abyssal theories},
975  journal = EFM,
976  year = {2009},
977  volume = {10},  number = {1-2},
978  pages = {257--273},
979  url = {http://dx.doi.org/10.1007/s10652-009-9159-y}
980}
981
982@ARTICLE{Dutay.J.C2004,
983  author = {J. -C. Dutay and P. J. -Baptiste and J. -M. Campin and A. Ishida
984   and E. M. -Reimer and R. J. Matear and A. Mouchet and I. J. Totterdell
985   and Y. Yamanaka and K. Rodgers and G. Madec and J.C. Orr},
986  title = {Evaluation of OCMIP-2 ocean models’ deep circulation with mantle helium-3},
987  journal = JMS,
988  year = {2004},
989  pages = {1--22}
990}
991
992@ARTICLE{D'Ortenzio_al_GRL05,
993  author = {F. D\'Ortenzio and D. Iudicone and C. de Boyer Mont\'{e}gut and P.
994   Testor and D. Antoine and S. Marullo and R. Santoleri and G. Madec},
995  title = {Seasonal variability of the mixed layer depth in the Mediterranean
996   Sea : a new climatology based on analysis of individual profiles},
997  journal = GRL,
998  year = {2005},
999  volume = {32},
1000  pages = {L12605},
1001  doi = {10.1029/2005GL022463},
1002  url = {http://dx.doi.org/10.1029/2005GL022463}
1003}
1004
1005@ARTICLE{Egbert_Ray_JGR01,
1006  author = {G.B. Egbert and R.D. Ray},
1007  title = {Estimates of M2 tidal energy dissipation from TOPEX/POSEIDON altimeter
1008   data},
1009  journal = JGR,
1010  year = {2001},
1011  volume = {106},
1012  pages = {22475--22502}
1013}
1014
1015@ARTICLE{Egbert_Ray_Nat00,
1016  author = {G.B. Egbert and R.D Ray},
1017  title = {Significant dissipation of tidal energy in the deep ocean inferred
1018   from satellite altimeter data},
1019  journal = {Nature},
1020  year = {2000},
1021  volume = {405},
1022  pages = {775--778}
1023}
1024
1025@ARTICLE{Eiseman1980,
1026  author = {P. R. Eiseman and A. P. Stone},
1027  title = {Conservation lows of fluid dynamics -- A survey},
1028  journal = {SIAM Review},
1029  year = {1980},
1030  volume = {22},
1031  pages = {12--27}
1032}
1033
1034@ARTICLE{Emile-Geay_Madec_OS09,
1035  author = {J. Emile-Geay and G. Madec},
1036  title = {Geothermal heating, diapycnal mixing and the abyssal circulation},
1037  journal = OS,
1038  year = {2009},
1039  volume = {5},
1040  pages = {281--325}
1041}
1042
1043@ARTICLE{Engerdahl_Tel95,
1044 author = {H. Engerdahl},
1045 year = {1995},
1046 title = {Use of the flow relaxation scheme in a three-dimensional baroclinic ocean model with realistic topography},
1047 journal = {Tellus},
1048 volume = {47A},
1049 pages = {365--382}
1050}
1051
1052@ARTICLE{EUROMODEL_OA95,
1053  author = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
1054   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
1055   G. Chabert d'Hieres, H. Didelle, P. Gleizon, D. Obaton, M. Cr\'{e}pon,
1056   C. Herbaut, G. Madec, S. Speich, J. Nihoul, J. M. Beckers, P. Brasseur,
1057   E. Deleersnijder, S. Djenidi, J. Font, A. Castellon, E. Garcia-Ladona,
1058   M. J. Lopez-Garcia, M. Manriquez, M. Maso, J. Salat, J. Tintore,
1059   S. Alonso, D. Gomis, A. Viudez, M. Astraldi, D. Bacciola, M. Borghini,
1060   F. Dell'amico, C. Galli, E. Lazzoni, G. P. Gasparini, S. Sparnocchia,
1061   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
1062   the circulation of the Western Mediterranean Sea. Oceanologica Acta,
1063   18, 2, 255-271.},
1064  title = {EUROMODEL Group (P.M. Lehucher, L. Beautier, M. Chartier, F. Martel,
1065   L. Mortier, P. Brehmer, C. Millot, C. Alberola, M. Benzhora, I. Taupier-Letage,
1066   G. Chabert d'Hieres, H. Didelle, P. Gleizon, D. Obaton, M. Cr\'{e}pon,
1067   C. Herbaut, G. Madec, S. Speich, J. Nihoul, J. M. Beckers, P. Brasseur,
1068   E. Deleersnijder, S. Djenidi, J. Font, A. Castellon, E. Garcia-Ladona,
1069   M. J. Lopez-Garcia, M. Manriquez, M. Maso, J. Salat, J. Tintore,
1070   S. Alonso, D. Gomis, A. Viudez, M. Astraldi, D. Bacciola, M. Borghini,
1071   F. Dell'amico, C. Galli, E. Lazzoni, G. P. Gasparini, S. Sparnocchia,
1072   and A. Harzallah, 1995 : Progress from 1989 to 1992 in understanding
1073   the circulation of the Western Mediterranean Sea.},
1074  journal = {Oceanologica Acta},
1075  year = {1995},
1076  volume = {18},  number = {2},
1077  pages = {255--271}
1078}
1079
1080@PHDTHESIS{Farge1987,
1081  author = {M. Farge},
1082  title = {Dynamique non lineaire des ondes et des tourbillons dans les equations de Saint Venant},
1083  school = {Doctorat es Mathematiques, Paris VI University, France},
1084  year = {1987},
1085  pages = {401pp}
1086}
1087
1088@ARTICLE{Farrow1995,
1089  author = {D. E. Farrow and D. P. Stevens},
1090  title = {A new tracer advection scheme for Bryan--Cox type ocean general circulation
1091   models},
1092  journal = JPO,
1093  year = {1995},
1094  volume = {25},
1095  pages = {1731--1741.}
1096}
1097
1098@ARTICLE{Flather1976,
1099 author = {R.A. Flather},
1100 year = {1976},
1101 title = {A tidal model of the north-west European continental shelf},
1102 journal = {Memoires de la Societ\'{e} Royale des Sciences de Li\`{e}ge},
1103 volume = {6},
1104 pages = {141--164}
1105}
1106
1107@ARTICLE{Flather_JPO94,
1108 author = {R.A. Flather},
1109 year = {1994},
1110 title = {A storm surge prediction model for the northern Bay of Bengal with application to the cyclone disaster in April 1991},
1111 journal = JPO,
1112 volume = {24},
1113 pages = {172--190}
1114}
1115
1116@ARTICLE{Fujio1991,
1117  author = {S. Fujio and N. Imasato},
1118  title = {Diagnostic calculation for circulation and water mass movement in
1119   the deep Pacific},
1120  journal = JGR,
1121  year = {1991},
1122  volume = {96},
1123  pages = {759--774}
1124}
1125
1126@ARTICLE{Galperin_al_JAS88,
1127  author = {B. Galperin and L. H. Kantha and S. Hassid and A. Rosati},
1128  title = {A quasi-equilibrium turbulent energy model for geophysical flows},
1129  journal = JAS,
1130  year = {1988},
1131  volume = {45},
1132  pages = {55--62}
1133}
1134
1135@ARTICLE{Gargett1984,
1136  author = {A. E. Gargett},
1137  title = {Vertical eddy diffusivity in the ocean interior},
1138  journal = JMR,
1139  year = {1984},
1140  volume = {42}
1141}
1142
1143@ARTICLE{Gaspar1990,
1144  author = {P. Gaspar and Y. Gr{\'e}goris and J.-M. Lefevre},
1145  title = {A simple eddy kinetic energy model for simulations of the oceanic vertical mixing\:
1146    Tests at Station Papa and long-term upper ocean study site},
1147  journal = JGR,
1148  year = {1990},
1149  volume = {95},  number = {C9}
1150}
1151
1152@ARTICLE{Gent1990,
1153  author = {P. R. Gent and J. C. Mcwilliams},
1154  title = {Isopycnal Mixing in Ocean Circulation Models},
1155  journal = JPO,
1156  year = {1990},
1157  volume = {20},  number = {1},
1158  pages = {150--155},
1159}
1160
1161@Article{Gentemann_al_JGR09,
1162  author =   {C. L. Gentemann  and P. J. Minnett and B. Ward},
1163  title =        {Profiles of Ocean Surface heating ({POSH}): A new model
1164                  of upper ocean diurnal warming},
1165  journal =     JGR,
1166  year =     {2009},
1167  Volume =   {114},
1168  Pages =    {C07017},
1169  doi =   {10.1029/2008JC004825},
1170  OPTannote =   {}
1171}
1172
1173@ARTICLE{Gerdes1993a,
1174  author = {R. Gerdes},
1175  title = {A primitive equation ocean circulation model using a general vertical
1176   coordinate transformation 1. Description and testing of the model},
1177  journal = JGR,
1178  year = {1993},
1179  volume = {98}
1180}
1181
1182@ARTICLE{Gerdes1993b,
1183  author = {R. Gerdes},
1184  title = {A primitive equation ocean circulation model using a general vertical
1185   coordinate transformation 2. Application to an overflow problem},
1186  journal = JGR,
1187  year = {1993},
1188  volume = {98},
1189  pages = {14703--14726}
1190}
1191@ARTICLE{Gerdes1991,
1192   Author = {Gerdes, R{\"u}diger and K{\"o}berle, Cornelia and Willebrand, J{\"u}rgen},
1193   Doi = {10.1007/BF00210006},
1194   Journal = {Clim. Dynamics},
1195   Number = {4},
1196   Pages = {211--226},
1197   Title = {The influence of numerical advection schemes on the results of ocean general circulation models},
1198   Url = {http://dx.doi.org/10.1007/BF00210006},
1199   Volume = {5},
1200   Year = {1991},
1201}
1202@TECHREPORT{Gibson_TR86,
1203  author = {J. K. Gibson},
1204  title = {Standard software development and maintenance},
1205  institution = {Operational Dep., ECMWF, Reading, UK.},
1206  year = {1986}
1207}
1208
1209@BOOK{Gill1982,
1210  title = {Atmosphere-Ocean Dynamics},
1211  publisher = {International Geophysics Series, Academic Press, New-York},
1212  year = {1982},
1213  author = {A. E. Gill}
1214}
1215
1216@article{goff_JGR2010,
1217   author = {J. A. Goff},
1218   title = {Global prediction of abyssal hill root-mean-square heights from small-scale altimetric gravity variability},
1219   issn = {2156-2202},
1220   url = {http://dx.doi.org/10.1029/2010JB007867},
1221   doi = {10.1029/2010JB007867},
1222   abstract = {Abyssal hills, which are pervasive landforms on the seafloor of the Earth's oceans, represent a potential tectonic record of the history of mid-ocean ridge spreading. However, the most detailed global maps of the seafloor, derived from the satellite altimetry-based gravity field, cannot be used to deterministically characterize such small-scale ({\textless}10 km) morphology. Nevertheless, the small-scale variability of the gravity field can be related to the statistical properties of abyssal hill morphology using the upward continuation formulation. In this paper, I construct a global prediction of abyssal hill root-mean-square (rms) heights from the small-scale variability of the altimetric gravity field. The abyssal hill-related component of the gravity field is derived by first masking distinct features, such as seamounts, mid-ocean ridges, and continental margins, and then applying a newly designed adaptive directional filter algorithm to remove fracture zone/discontinuity fabric. A noise field is derived empirically by correlating the rms variability of the small-scale gravity field to the altimetric noise field in regions of very low relief, and the noise variance is subtracted from the small-scale gravity variance. Suites of synthetically derived, abyssal hill formed gravity fields are generated as a function of water depth, basement rms heights, and sediment thickness and used to predict abyssal hill seafloor rms heights from corrected small-scale gravity rms height. The resulting global prediction of abyssal hill rms heights is validated qualitatively by comparing against expected variations in abyssal hill morphology and quantitatively by comparing against actual measurements of rms heights. Although there is scatter, the prediction appears unbiased.},
1223   volume = {115},
1224   number = {B12},
1225   journal = {Journal of Geophysical Research: Solid Earth},
1226   year = {2010},
1227   pages = {B12104},
1228}
1229
1230@ARTICLE{Goosse_al_JGR99,
1231  author = {H. Goosse and E. Deleersnijder and T. Fichefet and M. England},
1232  title = {Sensitivity of a global coupled ocean-sea ice model to the parameterization of vertical mixing},
1233  journal = JGR,
1234  year = {1999},
1235  volume = {104},
1236  pages = {13,681--13,695}
1237}
1238
1239@ARTICLE{Gorgues_al_GRL07,
1240  author = {T. Gorgues and C. Menkes and O. Aumont and K. Rodgers and G. Madec and Y. Dandonneau},
1241  title = {Indonesian Throughflow control of the eastern equatorial Pacific biogeochemistry},
1242  journal = GRL,
1243  year = {2007},
1244  volume = {34},
1245  pages = {L05609},
1246  doi = {10.1029/2006GL028210},
1247  url = {http://dx.doi.org/10.1029/2006GL028210}
1248}
1249
1250@ARTICLE{Graham_McDougall_JPO13,
1251  author = {F.S. Graham and T.J. McDougall},
1252  title = {Quantifying the nonconservative production of conservative temperature, potential temperature, and entropy},
1253  journal = JPO,
1254  year = {2013},
1255  volume = {43},
1256  pages = {838--862},
1257  url ={http://dx.doi.org/10.1175/JPO-D-11-0188.1}
1258}
1259
1260@ARTICLE{Greatbatch_JGR94,
1261  author = {R. J. Greatbatch},
1262  title = {A note on the representation of steric sea level in models that conserve
1263   volume rather than mass},
1264  journal = JGR,
1265  year = {1994},
1266  volume = {99},  number = {C6},
1267  pages = {12,767--12,771}
1268}
1269
1270@BOOK{Griffies_Bk04,
1271  title = {Fundamentals of ocean climate models},
1272  publisher = {Princeton University Press, 434pp},
1273  year = {2004},
1274  author = {S.M. Griffies}
1275}
1276
1277@ARTICLE{Griffies_JPO98,
1278  author = {S.M. Griffies},
1279  title = {The Gent-McWilliams skew-flux},
1280  journal = JPO,
1281  year = {1998},
1282  volume = {28},
1283  pages = {831--841}
1284}
1285
1286@ARTICLE{Griffies_al_OM09,
1287  author = {S.M. Griffies and A. Biastoch and C. Boning and F. Bryan and G. Danabasoglu
1288   and E. P. Chassignet and M. H. England and R. Gerdes and H. Haak
1289   and R. W. Hallberg and W. Hazeleger and J. Jungclaus and W. G. Large
1290   and G. Madec and A. Pirani and B. L. Samuels and M. Scheinert and
1291   A. Sen Gupta and C. A. Severijns and H. L. Simmons and A.-M. Treguier
1292   and M. Winton and S. Yeager and J. Yin},
1293  title = {Coordinated Ocean-ice Reference Experiments (COREs)},
1294  journal = OM,
1295  year = {2009},
1296  volume = {26},  number = {1-2},
1297  pages = {1--46},
1298  doi = {10.1016/j.ocemod.2008.08.007},
1299  url = {http://dx.doi.org/10.1016/j.ocemod.2008.08.007}
1300}
1301
1302@ARTICLE{Griffies_al_OS05,
1303  author = {S.M. Griffies and A. Gnanadesikan and K.W. Dixon and J.P. Dunne and
1304   R. Gerdes and M.J. Harrison and A. Rosati and J.L. Russell and B.L.
1305   Samuels and M.J. Spelman and M. Winton and R. Zhang},
1306  title = {Formulation of an ocean model for global climate simulations},
1307  journal = OS,
1308  year = {2005},
1309  volume = {1},
1310  pages = {45--79}
1311  }
1312
1313@ARTICLE{Griffies_al_JPO98,
1314  author = {S.M. Griffies and A. Gnanadesikan and R.C. Pacanowski and V.D. Larichev
1315   and J.K. Dukowicz and R.D. Smith},
1316  title = {Isoneutral Diffusion in a z-Coordinate Ocean Model},
1317  journal = JPO,
1318  year = {1998},
1319  volume = {28},  number = {5},
1320  pages = {805--830},
1321}
1322
1323@ARTICLE{Griffies_al_MWR01,
1324  author = {S.M. Griffies and R.C. Pacanowski and M. Schmidt and V. Balaji},
1325  title = {Tracer Conservation with an Explicit Free Surface Method for z-Coordinate
1326   Ocean Models},
1327  journal = MWR,
1328  year = {2001},
1329  volume = {129},  number = {5},
1330  pages = {1081--1098},
1331}
1332
1333@ARTICLE{Griffies_Hallberg_MWR00,
1334  author = {S.M. Griffies and R.W. Hallberg},
1335  title = {Biharmonic friction with a Smagorinsky-like viscosity for use in large-scale eddy-permitting ocean models},
1336  journal = MWR,
1337  year = {2000},
1338  volume = {128}, 
1339  pages = {2935–-2946},
1340 url = {http://dx.doi.org/10.1175/1520-0493(2000)128}
1341}
1342
1343@ARTICLE{Guilyardi_al_JC04,
1344  author = {E. Guilyardi and S. Gualdi and J. M. Slingo and A. Navarra and P. Delecluse
1345    and J. Cole and G. Madec and M. Roberts and M. Latif and L. Terray},
1346  title = {Representing El Ni\~{n}o in coupled ocean-atmosphere GCMs: the dominant role of the atmospheric component},
1347  journal = JC,
1348  year = {2004},
1349  volume = {17},
1350  pages = {4623--4629}
1351}
1352
1353@ARTICLE{Guilyardi_Madec_CD98,
1354  author = {E. Guilyardi and G. Madec},
1355  title = {Performance of the OPA-ARPEGE-T21 global ocean-atmosphere coupled model},
1356  journal = CD,
1357  year = {1997},
1358  volume = {13},
1359  pages = {149--165}
1360}
1361
1362@ARTICLE{Guilyardi_al_CD01,
1363  author = {E. Guilyardi and G. Madec and L. Terray},
1364  title = {The role of lateral ocean physics in the upper ocean thermal balance of a coupled ocean-atmosphere GCM},
1365  journal = CD,
1366  year = {2001},
1367  volume = {17},
1368  pages = {589--599},
1369  number = {8}
1370}
1371
1372@ARTICLE{Guilyardi_al_CRAS95,
1373  author = {E. Guilyardi and G. Madec and L. Terray and M. D\'{e}qu\'{e} and
1374   M. Pontaud and M. Imbard and D. Stephenson and M.-A. Filiberti and
1375   D. Cariolle and P. Delecluse and O. Thual},
1376  title = {Simulation couplée océan-atmosphère de la variabilité du climat},
1377  journal = {C. R. Acad. Sci Paris},
1378  year = {1995},
1379  volume = {320},  number = {s\'{e}rie IIa},
1380  pages = {683--690}
1381}
1382
1383@ARTICLE{Guyon_al_EP99,
1384  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard},
1385  title = {A Parallel ocean model for high resolution studies},
1386  journal = {Lecture Notes in Computer Science},
1387  year = {1999},
1388  volume = {Euro-Par'99},
1389  pages = {603--607}
1390}
1391
1392@ARTICLE{Guyon_al_CalPar99,
1393  author = {M. Guyon and G. Madec and F.-X. Roux and M. Imbard and C. Herbaut
1394   and P. Fronier},
1395  title = {Parallelization of the OPA ocean model},
1396  journal = {Calculateurs Paralleles},
1397  year = {1999},
1398  volume = {11},  number = {4},
1399  pages = {499--517}
1400}
1401
1402@BOOK{Haltiner1980,
1403  title = {Numerical prediction and dynamic meteorology},
1404  publisher = {John Wiley {\&} Sons Eds., second edition},
1405  year = {1980},
1406  author = {G. J. Haltiner and R. T. Williams},
1407  pages = {477pp}
1408}
1409
1410@ARTICLE{Haney1991,
1411  author = {R. L. Haney},
1412  title = {On the Pressure Gradient Force over Steep Topography in Sigma Coordinate Ocean Models},
1413  journal = JPO,
1414  year = {1991},
1415  volume = {21},  number = {4},
1416  pages = {610--619},
1417}
1418
1419@ARTICLE{Hazeleger_Drijfhout_JPO98,
1420  author = {W. Hazeleger and S. S. Drijfhout},
1421  title = {Mode water variability in a model of the subtropical gyre: response to anomalous forcing},
1422  journal = JPO,
1423  year = {1998},
1424  volume = {28},
1425  pages = {266--288},
1426}
1427
1428@ARTICLE{Hazeleger_Drijfhout_JPO99,
1429  author = {W. Hazeleger and S. S. Drijfhout},
1430  title = {Stochastically forced mode water variability},
1431  journal = JPO,
1432  year = {1999},
1433  volume = {29},
1434  pages = {1772--1786},
1435}
1436
1437@ARTICLE{Hazeleger_Drijfhout_JGR00,
1438  author = {W. Hazeleger and S. S. Drijfhout},
1439  title = {A model study on internally generated variability in subtropical mode water formation},
1440  journal = JGR,
1441  year = {2000},
1442  volume = {105},
1443  pages = {13,965--13,979},
1444}
1445@ARTICLE{Hazeleger_Drijfhout_JPO00,
1446  author = {W. Hazeleger and S. S. Drijfhout},
1447  title = {Eddy subduction in a model of the subtropical gyre},
1448  journal = JPO,
1449  year = {2000},
1450  volume = {30},
1451  pages = {677--695},
1452}
1453
1454@ARTICLE{Hellerman_Rosenstein_JPO83,
1455  author = {S. Hellerman and  M. Rosenstein },
1456  title = {Normal monthly wind stress over the world ocean with error estimates},
1457  journal = JPO,
1458  year = {1983},
1459  volume = {13},
1460  pages = {1093--1104},
1461}
1462
1463@ARTICLE{He_Ding_JSC01,
1464  author = {Y. He and C. H. Q. Ding},
1465  title = {Using Accurate Arithmetics to Improve Numerical Reproducibility and Stability in Parallel Applications},
1466  journal = JSC,
1467  year = {2001},
1468  volume = {18},
1469  pages = {259--277},
1470}
1471
1472@ARTICLE{Hirt_al_JCP74,
1473  author = {C. W. Hirt and A. A. Amsden and J. L. Cook},
1474  title = {An Arbitrary Lagrangian--Eulerian Computing Method for All Flow Speeds},
1475  journal = JCP,
1476  year = {1974},
1477  volume = {14},
1478  pages = {227--253}
1479}
1480
1481@ARTICLE{Hofmeister_al_OM09,
1482  author = {R. Hofmeister and H. Burchard and J.-M. Beckers},
1483  title = {Non-uniform adaptive vertical grids for 3D numerical ocean models},
1484  journal = OM,
1485  year = {2009},
1486  volume = {33},
1487  pages = {70--86},
1488  doi = {10.1016/j.ocemod.2009.12.003},
1489  url = {http://dx.doi.org/10.1016/j.ocemod.2009.12.003},
1490  issn = {1463-5003},
1491}
1492
1493@ARTICLE{Holland1999,
1494  author = {D. Holland and A. Jenkins},
1495  title = {Modeling Thermodynamic Ice-Ocean Interactions at the Base of an Ice Shelf},
1496  journal = JPO,
1497  year = {1999},
1498  volume = {29}, 
1499  pages = {1787--1800},
1500}
1501
1502@ARTICLE{HollowayOM86,
1503  author = {Greg Holloway},
1504  title = {A Shelf Wave/Topographic Pump Drives Mean Coastal Circulation (part I)},
1505  journal = OM,
1506  year = {1986},
1507  volume = {68}, 
1508}
1509
1510@ARTICLE{HollowayJPO92,
1511  author = {Greg Holloway},
1512  title = {Representing Topographic Stress for Large-Scale Ocean Models},
1513  journal = JPO,
1514  year = {1992},
1515  volume = {22}, 
1516  pages = {1033--1046},
1517}
1518
1519@ARTICLE{HollowayJPO94,
1520  author = {Michael Eby and Greg Holloway},
1521  title = {Sensitivity of a Large-Scale Ocean Model to a Parameterization of Topographic Stress},
1522  journal = JPO,
1523  year = {1994},
1524  volume = {24}, 
1525  pages = {2577--2587},
1526}
1527
1528@ARTICLE{HollowayJGR09,
1529  author = {Greg Holloway and Zeliang Wang},
1530  title = {Representing eddy stress in an Arctic Ocean model},
1531  journal = JGR,
1532  year = {2009},
1533  doi = {10.1029/2008JC005169}, 
1534}
1535
1536@ARTICLE{HollowayOM08,
1537  author = {Mathew Maltrud and Greg Holloway},
1538  title = {Implementing biharmonic neptune in a global eddying ocean model},
1539  journal = OM,
1540  year = {2008},
1541  volume = {21}, 
1542  pages = {22--34},
1543}
1544
1545@ARTICLE{Hordoir_al_CD08,
1546  author = {R. Hordoir and J. Polcher and J.-C. Brun-Cottan and G. Madec},
1547  title = {Towards a parametrization of river discharges into ocean general
1548   circulation models: a closure through energy conservation},
1549  journal = CD,
1550  year = {2008},
1551  volume = {31},  number = {7-8},
1552  pages = {891--908},
1553  doi = {10.1007/s00382-008-0416-4},
1554  url = {http://dx.doi.org/10.1007/s00382-008-0416-4}
1555}
1556
1557@ARTICLE{Hsu1990,
1558  author = {Hsu, Yueh-Jiuan G. and Arakawa, Akio},
1559  title = {Numerical Modeling of the Atmosphere with an Isentropic Vertical Coordinate},
1560  journal = MWR,
1561  year = {1990},
1562  volume = {118},  number = {10},
1563  pages = {1933--1959},
1564}
1565
1566@ARTICLE{Huang_JPO93,
1567  author = {R.X. Huang},
1568  title = {Real freshwater flux as a natural boundary condition for the salinity
1569   balance and thermohaline circulation forced by evaporation and precipitation},
1570  journal = JPO,
1571  year = {1993},
1572  volume = {23},
1573  pages = {2428--2446}
1574}
1575
1576@TECHREPORT{Hunke2008,
1577  author = {E.C. Hunke and W.H. Lipscomb},
1578  title = {CICE: the Los Alamos sea ice model documentation and software user's manual,
1579        Version 4.0},
1580  institution = { Los Alamos National Laboratory, N.M.},
1581  publisher = {LA-CC-06-012, Los Alamos National Laboratory, N.M.},
1582  year = {2008}
1583}
1584
1585@TechReport{Hunter2006,
1586  Title                    = {Specification for Test Models of Ice Shelf Cavities},
1587  Author                   = {J. R. Hunter},
1588  Institution              = {Antarctic Climate \& Ecosystems Cooperative Research Centre Private Bag 80, Hobart, Tasmania 7001},
1589  Year                     = {2006},
1590}
1591
1592@TECHREPORT{TEOS10,
1593  author = {IOC and SCOR and IAPSO},
1594  title = {The international thermodynamic equation of seawater - 2010: Calculation and use of thermodynamic properties},
1595  institution = {Intergovernmental Oceanographic Commission},
1596  publisher = {Manuals and Guides No. 56, UNESCO (English)},
1597  year = {2010},
1598  pages = {196pp},
1599  url = {http://www.teos-10.org/pubs/TEOS-10_Manual.pdf}
1600}
1601
1602@ARTICLE{Iudicone_al_JPO08b,
1603  author = {D. Iudicone and G. Madec and B. Blanke and S. Speich},
1604  title = {The role of Southern Ocean surface forcings and mixing in the global conveyor},
1605  journal = JPO,
1606  year = {2008},
1607  volume = {38},
1608  pages = {1377--1400}
1609}
1610
1611@ARTICLE{Iudicone_al_JPO08a,
1612  author = {D. Iudicone and G. Madec and T. J. McDougall},
1613  title = {Diagnosing water transformations and the key role of light penetration},
1614  journal = JPO,
1615  year = {2008},
1616  volume = {38},
1617  pages = {1357--1376}
1618}
1619
1620@ARTICLE{Iudicone_al_JPO07,
1621  author = {D. Iudicone and K. Rodgers and R. Schopp and G. Madec},
1622  title = {An Exchange window for the Antarctic Intermediate Water Injection into the South Pacific},
1623  journal = JPO,
1624  year = {2007},
1625  volume = {37},
1626  pages = {31--49}
1627}
1628
1629@ARTICLE{Iudicone_al_JPO08c,
1630  author = {D. Iudicone and S. Speich and G. Madec and B. Blanke},
1631  title = {The global Conveyor Belt in a Southern Ocean perspective},
1632  journal = JPO,
1633  year = {2008},
1634  volume = {38},
1635  pages = {1401--1425}
1636}
1637
1638@ARTICLE{Izumo_al_CD10,
1639  author = {T. Izumo and S.Masson and J. Vialard and C. de Boyer Montegut and
1640   S. K. Behera and G. Madec and K. Takahashi and T. Yamagata},
1641  title = {Interannual variations of low-frequency Madden-Julian Oscillation in autral summer: Observations},
1642  journal = CD,
1643  year = {2010},
1644  volume = {35},  number = {4},
1645  pages = {669--683},
1646  url = {http://dx.doi.org/10.1007/s00382-009-0655-z}
1647}
1648
1649@ARTICLE{JackMcD1995,
1650  author = {D. R. Jackett and T. J. McDougall},
1651  title = {Minimal adjustment of hydrographic data to achieve static stability},
1652  journal = JAOT,
1653  year = {1995},
1654  volume = {12},
1655  pages = {381--389}
1656}
1657
1658@article{Jackson_Rehmann_JPO2014,
1659   author = {P. R. Jackson and C. R. Rehmann},
1660   title = {Experiments on differential scalar mixing in turbulence in a sheared, stratified flow},
1661   journal = JPO,
1662   volume = {44},
1663   issn = {0022-3670},
1664   url = {http://dx.doi.org/10.1175/JPO-D-14-0027.1},
1665   doi = {10.1175/JPO-D-14-0027.1},
1666   number = {10},
1667   year = {2014},
1668   pages = {2661--2680},
1669}
1670
1671@ARTICLE{Jayne_St_Laurent_GRL01,
1672  author = {S.R. Jayne and L.C. {St. Laurent}},
1673  title = {Parameterizing tidal disspiation over rough topography},
1674  journal = GRL,
1675  pages = {811--814}
1676}
1677
1678@ARTICLE{Jenkins1991,
1679  author = {A. Jenkins},
1680  title = {A one-dimensional model of ice shelf-ocean interaction},
1681  journal = JGR,
1682  year = {1991},
1683  volume = {96},  number = {C11},
1684  pages = {2298--2312}
1685}
1686
1687@ARTICLE{Jenkins2001,
1688  author = {A. Jenkins},
1689  title = {The Role of Meltwater Advection in the Formulation of Conservative Boundary Conditions at an Ice-Ocean Interface},
1690  journal = JPO,
1691  year = {2001},
1692  volume = {31},
1693  pages = {285--296}
1694}
1695
1696@ARTICLE{Jenkins2010,
1697  author = {A. Jenkins},
1698  title = {observation and parameterization of ablation at the base of Ronne Ice Shelf, Antarctica},
1699  journal = JPO,
1700  year = {2010},
1701  volume = {40},  number = {10},
1702  pages = {2298--2312}
1703}
1704
1705@BOOK{Jerlov_Bk68,
1706  title = {Optical Oceanography},
1707  publisher = {Elsevier},
1708  year = {1968},
1709  author = {N. G. Jerlov},
1710  pages = {194pp}
1711}
1712
1713@ARTICLE{Jones_MWR99,
1714  author = {P. W. Jones},
1715  title = {First- and second-order conservative remapping schemes for grids in spherical coordinates},
1716  journal = MWR,
1717  year = {1999},
1718  volume = {127},
1719  pages = {2204--2210}
1720}
1721
1722@BOOK{Jones_Bk01,
1723  title = {A User's Guide for SCRIP: A Spherical Coordinate Remapping and Interpolation Package. Version 1.4},
1724  publisher = {Los Alamos National Laboratory},
1725  year = {2001},
1726  author = {P. W. Jones},
1727  pages = {27pp},
1728  url = {http://climate.lanl.gov/Software/SCRIP/SCRIPusers.pdf}
1729}
1730
1731@TECHREPORT{Jones_1998,
1732  title = {A User's Guide for SCRIP: A Spherical Coordinate Remapping and Interpolation Package. Version 1.4},
1733  institution = {Los Alamos National Laboratory},
1734  year = {1998},
1735  author = {P. W. Jones},
1736  url = {http://climate.lanl.gov/Software/SCRIP/SCRIPusers.pdf}
1737}
1738
1739@ARTICLE{Kantha_Clayson_1994,
1740  author = {L. H. Kantha and C. A. Clayson},
1741  title = {An improved mixed layer model for geophysical applications},
1742  journal = JGR,
1743  year = {1994},
1744  volume = {99},
1745  pages = {25,235--25,266}
1746}
1747
1748@ARTICLE{Kantha_Carniel_CSR05,
1749  author = {L. Kantha and S. Carniel},
1750  title = {Comment on ''Generic length-scale equation for geophysical turbulence models'' by L. Umlauf and H. Burchard},
1751  journal = JMS,
1752  year = {2005},
1753  volume = {61},
1754  pages = {693--702}
1755}
1756
1757@ARTICLE{Kasahara_MWR74,
1758  author = {A. Kasahara},
1759  title = {Various vertical coordinate systems used for numerical weather prediction},
1760  journal = MWR,
1761  year = {1974},
1762  volume = {102},
1763  pages = {509--522}
1764}
1765
1766@ARTICLE{Killworth_al_JPO91,
1767  author = {P.D. Killworth and D. Stainforth and D.J. Webb and S.M. Paterson},
1768  title = {The Development of a Free-Surface Bryan-Cox-Semtner Ocean Model},
1769  journal = JPO,
1770  year = {1991},
1771  volume = {21},  number = {9},
1772  pages = {1333--1348}
1773}
1774
1775@INPROCEEDINGS{Killworth1989,
1776  author = {P. D. Killworth},
1777  title = {On the parameterization of deep convection in ocean models},
1778  booktitle = {Parameterization of small-scale processes},
1779  year = {1989},
1780  editor = {Hawaiian winter workshop},
1781  month = {January 17-20},
1782  organization = {University of Hawaii at Manoa}
1783}
1784
1785@ARTICLE{Killworth1992,
1786  author = {P. D. Killworth},
1787  title = {An equivalent-barotropic mode in the fine resolution Antarctic model},
1788  journal = JPO,
1789  year = {1992},
1790  volume = {22},
1791  pages = {1379--1387}
1792}
1793
1794@ARTICLE{Koch-Larrouy_al_CD10,
1795  author = {A. Koch-Larrouy and M. Lengaigne and P. Terray and G. Madec and S. Masson},
1796  title = {Tidal mixing in the Indonesian Seas and its effect on the tropical climate system},
1797  journal = CD,
1798  year = {2010},
1799  volume = {34},  number = {6},
1800  pages = {891--904},
1801  doi = {10.1007/s00382-009-0642-4},
1802  url = {http://dx.doi.org/10.1007/s00382-009-0642-4}
1803}
1804
1805@ARTICLE{Koch-Larrouy_al_OD08b,
1806  author = {A. Koch-Larrouy and G. Madec and B. Blanke and R. Molcard},
1807  title = {Water mass transformation along the Indonesian throughflow in an OGCM},
1808  journal = OD,
1809  year = {2008},
1810  volume = {58},  number = {3-4},
1811  pages = {289--309},
1812  doi = {10.1007/s10236-008-0155-4},
1813  url = {http://dx.doi.org/10.1007/s10236-008-0155-4}
1814}
1815
1816@ARTICLE{Koch-Larrouy_al_GRL07,
1817  author = {A. Koch-Larrouy and G. Madec and P. Bouruet-Aubertot and T. Gerkema and L. Bessieres and R. Molcard},
1818  title = {Tidal mixing in the Indonesian Seas and its effect on the tropical climate system},
1819  journal = GRL,
1820  year = {2007},
1821  volume = {34},
1822  pages = {L04604},
1823  doi = {10.1029/2006GL028405},
1824  url = {http://dx.doi.org/10.1029/2006GL028405}
1825}
1826
1827@ARTICLE{Koch-Larrouy_al_OD08a,
1828  author = {A. Koch-Larrouy and G. Madec and D. Iudicone and A. Atmadipoera and R. Molcard},
1829  title = {Physical processes contributing to the water mass transformation of the Indonesian Throughflow},
1830  journal = OD,
1831  year = {2008},
1832  volume = {58},  number = {3-4},
1833  pages = {275--288},
1834  doi = {10.1007/s10236-008-0154-5},
1835  url = {http://dx.doi.org/10.1007/s10236-008-0154-5}
1836}
1837
1838@ARTICLE{Kolmogorov1942,
1839  author = {A. N. Kolmogorov},
1840  title = {The equation of turbulent motion in an incompressible fluid},
1841  journal = {Izv. Akad. Nauk SSSR, Ser. Fiz.},
1842  year = {1942},
1843  volume = {6},
1844  pages = {56--58}
1845}
1846@ARTICLE{Kondo1975,
1847  author = {J. Kondo},
1848  title = {Air-sea bulk transfer coefficients in diabatic conditions},
1849  journal = {Boundary-Layer Meteorol},
1850  year = {1975},
1851  volume = {9},
1852  pages = {91--112}
1853}
1854
1855@article{Lemarie_OM2012,
1856author = "F. Lemari\'{e} and L. Debreu and A.F. Shchepetkin and J.C. McWilliams",
1857title = "On the stability and accuracy of the harmonic and biharmonic isoneutral mixing operators in ocean models ",
1858journal = OM,
1859year = "2012",
1860volume = "52–53", pages = "9--35",
1861issn = "1463-5003",
1862doi = "http://dx.doi.org/10.1016/j.ocemod.2012.04.007",
1863url = "http://www.sciencedirect.com/science/article/pii/S1463500312000674",
1864}
1865
1866
1867@ARTICLE{Lemarie_OM2015,
1868  author = {F. Lemari\'{e} and L. Debreu and J. Demange and  G. Madec and J.M. Molines and M. Honnorat},
1869  title = {Stability Constraints for Oceanic Numerical Models:
1870           Implications for the Formulation of time and space Discretizations},
1871  journal = OM,
1872  year = {2015},
1873  volume = {92},
1874  pages = {124--148},
1875  doi = {10.1016/j.ocemod.2015.06.006},
1876  url = {http://dx.doi.org/10.1016/j.ocemod.2015.06.006}
1877}
1878
1879@ARTICLE{Lermusiaux2001,
1880  author = {P. F. J. Lermusiaux},
1881  title = {Evolving the subspace of three-dimensional miltiscale ocean variability: Massachusetts Bay},
1882  journal = JMS,
1883  year = {2001},
1884  volume = {29},
1885  pages = {385--422}
1886}
1887
1888@PHDTHESIS{Levy_PhD96,
1889  author = {M. L\'{e}vy},
1890  title = {Mod\'{e}lisation des processus biog\'{e}ochimiques en M\'{e}diterran\'{e}e
1891           nord-occidentale. Cycle saisonnier et variabilit\'{e} m\'{e}so\'{e}chelle},
1892  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 207pp},
1893  year = {1996}
1894}
1895
1896@ARTICLE{Levy_al_GRL01,
1897  author = {M. L\'{e}vy and A. Estubier and G Madec},
1898  title = {Choice of an advection scheme for biogeochemical models},
1899  journal = GRL,
1900  year = {2001},
1901  volume = {28}
1902}
1903
1904@ARTICLE{Levy_al_OM10,
1905  author = {M. L\'{e}vy and P. Klein and A.-M. Tr\'{e}guier and D. Iovino and
1906   G. Madec and S. Masson and T. Takahashi},
1907  title = {Impacts of sub-mesoscale physics on idealized gyres},
1908  journal = OM,
1909  year = {2010},
1910  volume = {34},  number = {1-2},
1911  doi = {10.1016/j.ocemod.2010.04.001},
1912  url = {http://dx.doi.org/10.1016/j.ocemod.2010.04.001}
1913}
1914
1915@ARTICLE{Levy_al_JMS99,
1916  author = {M. L\'{e}vy and L. M\'{e}mery and G. Madec},
1917  title = {The onset of a bloom after deep winter convection in the Northwestern
1918   Mediterranean Sea: mesoscale process study with a primitive equation
1919   model},
1920  journal = JMS,
1921  year = {1999},
1922  volume = {16},  number = {1-2},
1923  pages = {7--21}
1924}
1925
1926@ARTICLE{Levy_al_DSR98,
1927  author = {M. L\'{e}vy and L. M\'{e}mery and G. Madec},
1928  title = {The onset of the spring bloom in the MEDOC area: mesoscale spatial
1929   variability},
1930  journal = DSR,
1931  year = {1998},
1932  volume = {I},  number = {46},
1933  pages = {1137--1160}
1934}
1935
1936@ARTICLE{Levy_al_DSR00,
1937  author = {M. L\'{e}vy and L. M\'{e}mery and G. Madec},
1938  title = {Combined effects of mesoscale processes and atmospheric high-frequency
1939   variability on the spring bloom in the MEDOC area},
1940  journal = DSR,
1941  year = {2000},
1942  volume = {47},
1943  pages = {527--531}
1944}
1945
1946@BOOK{Large_Yeager_Rep04,
1947  title = {Diurnal to decadal global forcing for ocean and sea-ice models: the data sets and flux climatologies},
1948  publisher = {NCAR Technical Note, NCAR/TN-460+STR, CGD Division of the National Center for Atmospheric Research},
1949  year = {2004},
1950  author = {W. G. Large and S. Yeager}}
1951
1952@ARTICLE{Large_al_RG94,
1953  author = {W. G. Large and J. C. McWilliams and S. C. Doney},
1954  title = {Oceanic vertical mixing - a review and a model with a nonlocal boundary layer parameterization},
1955  journal = {Reviews of Geophysics},
1956  year = {1994},
1957  volume = {32},
1958  pages = {363--404},
1959  doi = {10.1029/94RG01872},
1960  url = {http://dx.doi.org/10.1029/94RG01872}
1961}
1962
1963@ARTICLE{Latif_al_JC06,
1964  author = {M. Latif and C. Böning and J. Willebrand and A. Biastoch and J. Dengg
1965   and N. Keenlyside and U. Schweckendiek and G. Madec},
1966  title = {Is the Thermohaline Circulation Changing?},
1967  journal = JC,
1968  year = {2006},
1969  volume = {19},
1970  pages = {4631--4637}
1971}
1972
1973@PHDTHESIS{Lazar_PhD97,
1974  author = {A. Lazar},
1975  title = {La branche froide de la circulation thermohaline - sensibilit\'{e}
1976   \`{a} la diffusion turbulente dans un mod\`{e}le de circulation g\'{e}n\'{e}rale
1977   id\'{e}alis\'{e}e},
1978  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 200pp},
1979  year = {1997}
1980}
1981
1982@ARTICLE{Lazar_al_JPO99,
1983  author = {A. Lazar and G. Madec and P. Delecluse},
1984  title = {The Deep Interior Downwelling, the Veronis Effect, and Mesoscale
1985   Tracer Transport Parameterizations in an OGCM},
1986  journal = JPO,
1987  year = {1999},
1988  volume = {29},  number = {11},
1989  pages = {2945--2961},
1990}
1991
1992@ARTICLE{Le_Sommer_al_OM09,
1993  author = {J. {Le Sommer} and T. Penduff and S. Theetten and G. Madec and B.
1994   Barnier},
1995  title = {How momentum advection schemes influence current-topography interactions
1996   at eddy permitting resolution},
1997  journal = OM,
1998  year = {2009},
1999  volume = {29},  number = {1},
2000  pages = {1--14},
2001  doi = {10.1016/j.ocemod.2008.11.007},
2002  url = {http://dx.doi.org/10.1016/j.ocemod.2008.11.007}
2003}
2004
2005@PHDTHESIS{Leclair_PhD2010,
2006  author = {M. Leclair},
2007  title = {introduction d'une coordonn\'{e}e verticale arbitrairement Lagrangienne
2008   Eul\'{e}rienne dans le code NEMO, 180pp.},
2009  school = {Universit\'{e} Pierre and Marie Curie},
2010  year = {2010}
2011}
2012
2013@ARTICLE{Leclair_Madec_OM09,
2014  author = {M. Leclair and G. Madec},
2015  title = {A conservative leap-frog time stepping method},
2016  journal = OM,
2017  year = {2009},
2018  volume = {30},  number = {2-3},
2019  pages = {88-94},
2020  doi = {10.1016/j.ocemod.2009.06.006},
2021  url = {http://dx.doi.org/10.1016/j.ocemod.2009.06.006}
2022}
2023
2024@ARTICLE{Leclair_Madec_OM11,
2025  author = {M. Leclair and G. Madec},
2026  title = {$\tilde{z}$-coordinate, an Arbitrary Lagrangian-Eulerian coordinate separating high and low frequency},
2027  journal = OM,
2028  year = {2011},
2029  volume = {37},  pages = {139--152},
2030  doi = {10.1016/j.ocemod.2011.02.001},
2031  url = {http://dx.doi.org/10.1016/j.ocemod.2011.02.001}
2032}
2033
2034@ARTICLE{Lele_JCP1992,
2035  author = {S.K. Lele},
2036  title = {Compact finite difference schemes with spectral-like resolution},
2037  journal = JCP,
2038  year = {1992},
2039  volume = {103}, pages = {16--42}
2040}
2041
2042@ARTICLE{Lengaigne_al_JC03,
2043  author = {M. Lengaigne and J.-P. Boulanger and C. Menkes and G. Madec and P.
2044   Delecluse and E. Guilyardi, and J. Slingo},
2045  title = {The March 1997 Westerly Wind Event and the onset of the 1997/98 El
2046   Niño: Understanding the role of the atmospheric},
2047  journal = JC,
2048  year = {2003},
2049  volume = {16},  number = {20}, pages = {3330--3343}
2050}
2051
2052@ARTICLE{Lengaigne_al_JGR02,
2053  author = {M. Lengaigne and J.-P. Boulanger and C. Menkes and S. Masson and
2054   G. Madec and P. Delecluse},
2055  title = {Ocean response to the March 1997 Westerly Wind Event},
2056  journal = JGR,
2057  year = {2002},
2058  doi = {10.1029/2001JC000841},
2059  url = {http://dx.doi.org/10.1029/2001JC000841}
2060}
2061
2062@ARTICLE{Lengaigne_al_JGR03,
2063  author = {M. Lengaigne and G. Madec and G. Alory and C. Menkes},
2064  title = {Sensitivity of the tropical Pacific Ocean to isopycnal diffusion
2065   on tracer and dynamics},
2066  journal = JGR,
2067  year = {2003},
2068  volume = {108},  number = {C11},
2069  pages = {3345},
2070  doi = {10.1029/2002JC001704},
2071  url = {http://dx.doi.org/10.1029/2002JC001704}
2072}
2073
2074@ARTICLE{Lengaigne_al_GRL09,
2075  author = {M. Lengaigne and G. Madec and L. Bopp and C. Menkes and O. Aumont and P. Cadule},
2076  title = {Bio-physical feedbacks in the Arctic Ocean using an Earth System model},
2077  journal = GRL,
2078  year = {2009},
2079  volume = {36}, 
2080  pages = {L21602},
2081  doi = {10.1029/2009GL040145},
2082  url = {http://dx.doi.org/10.1029/2009GL040145}
2083}
2084
2085@ARTICLE{Lengaigne_al_CD07,
2086  author = {M. Lengaigne and C. Menkes and O. Aumont and T. Gorgues and L. Bopp and J.-M. Andr\'{e} G. Madec},
2087  title = {Bio-physical feedbacks on the tropical Pacific climate in a Coupled
2088   General Circulation Model},
2089  journal = CD,
2090  year = {2007},
2091  volume = {28},
2092  pages = {503--516}
2093}
2094
2095@ARTICLE{Leonard1991,
2096  author = {B. P. Leonard},
2097  title = {The ULTIMATE conservative difference scheme applied to unsteady one--dimensional advection},
2098  journal = {Computer Methods in Applied Mechanics and Engineering},
2099  year = {1991},
2100  pages = {17--74}
2101}
2102
2103@TECHREPORT{Leonard_Rep88,
2104  author = {B. P. Leonard},
2105  title = {Universal limiter for transient interpolation modelling of the advective transport equations},
2106  institution = {Technical Memorandum TM-100916 ICOMP-88-11, NASA},
2107  year = {1988}
2108}
2109
2110@ARTICLE{Leonard1979,
2111  author = {B. P. Leonard},
2112  title = {A stable and accurate convective modelling procedure based on quadratic
2113   upstream interpolation},
2114  journal = {Computer Methods in Applied Mechanics and Engineering},
2115  year = {1979},
2116  volume = {19},
2117  pages = {59--98},
2118}
2119
2120@TECHREPORT{Levier2007,
2121  author = {B. Levier and A.-M. Tr\'{e}guier and G. Madec and V. Garnier},
2122  title = {Free surface and variable volume in the NEMO code},
2123  institution = {MERSEA MERSEA IP report WP09-CNRS-STR-03-1A, 47pp, available on the
2124   NEMO web site},
2125  year = {2007}
2126}
2127
2128@BOOK{levitus82,
2129  title = {Climatological Atlas of the world ocean},
2130  publisher = {NOAA professional paper No. 13, 174pp},
2131  year = {1982},
2132  author = {S Levitus },
2133  pages = {173 pp}
2134}
2135
2136@ARTICLE{Li_al_OM2017},
2137   AUTHOR = {Q Li and B Fox-Kemper and {\O} Breivik and A Webb},
2138   YEAR = {2017},
2139   TITLE = {Statistical Models of Global Langmuir Mixing},
2140   JOURNAL = {OM},
2141   VOLUME = {113},
2142   ISSUE = {May},
2143   PAGES = {95--114},
2144   DOI = {10.1016/j.ocemod.2017.03.016}
2145}
2146
2147@ARTICLE{Li_Garrett_JMR93,
2148  author = {M. Li and C. Garrett},
2149  title = {Cell merging and the jet/downwelling ratio in Langmuir circulation},
2150  journal = JMR,
2151  year = {1993},
2152  volume = {51},
2153  pages = {737--769}
2154}
2155
2156@ARTICLE{Losch2008,
2157  author = {M. Losch},
2158  title = {Modeling ice shelf cavities in a z coordinate ocean general circulation model},
2159  journal = JGR,
2160  year = {2008},
2161  volume = {113},  number = {C13},
2162}
2163
2164@TECHREPORT{Lott1989,
2165  author = {F. Lott and G. Madec},
2166  title = {Implementation of bottom topography in the Ocean General Circulation
2167   Model OPA of the LODYC: formalism and experiments.},
2168  institution = {LODYC, France, 36pp.},
2169  year = {1989},
2170  number = {3}
2171}
2172
2173@ARTICLE{Lott_al_OM90,
2174  author = {F. Lott and G. Madec and J. Verron},
2175  title = {Topographic experiments in an Ocean General Circulation Model},
2176  journal = OM,
2177  year = {1990},
2178  volume = {88},
2179  pages = {1--4}
2180}
2181
2182@ARTICLE{Luo_al_JC05,
2183  author = {J.-J. Luo and S. Masson and E. Roeckner and G. Madec and T. Yamagata},
2184  title = {Reducing climatology bias in an ocean-atmosphere CGCM with improved
2185   coupling physics},
2186  journal = JC,
2187  year = {2005},
2188  volume = {18},  number = {13},
2189  pages = {2344--2360}
2190}
2191
2192@BOOK{Madec_Bk08,
2193  title = {NEMO ocean engine},
2194  publisher = {Note du P\^ole de mod\'{e}lisation, Institut Pierre-Simon Laplace
2195   (IPSL), France, No 27, ISSN No 1288-1619},
2196  year = {2008},
2197  author = {G. Madec}
2198}
2199
2200@BOOK{Madec_HDR01,
2201  title = {Le Cycle des Masses d'Eau Oc\'{e}aniqueset sa variabilit\'{e} dans le Syst\'{e}me Climatique},
2202  year = {2001},
2203  author = {G. Madec},
2204  pages = {63pp.},
2205  series = {Habilitation \'{a} Diriger des Recherches, Universit\'{e} Pierre et Marie Curie}
2206}
2207
2208@PHDTHESIS{Madec_PhD90,
2209  author = {G. Madec},
2210  title = {La formation d'eau profonde et son impact sur la circulation r\'{e}gionale
2211   en M\'{e}diterran\'{e}e Occidentale - une approche num\'{e}rique},
2212  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 194pp.},
2213  year = {1990},
2214  month = {2 mai}
2215}
2216
2217@ARTICLE{Madec_al_DAO91,
2218  author = {G. Madec and M. Chartier and M. Cr\'{e}pon},
2219  title = {Effect of thermohaline forcing variability on deep water formation
2220   in the Northwestern Mediterranean Sea - a high resulution three-dimensional
2221   study},
2222  journal = DAO,
2223  year = {1991},
2224  volume = {15},
2225  pages = {301--332}
2226}
2227
2228@ARTICLE{Madec_al_JPO91,
2229  author = {G. Madec and M. Chartier and P. Delecluse and M. Cr\'{e}pon},
2230  title = {A three-dimensional numerical study of deep water formation in the Northwestern Mediterranean Sea .},
2231  journal = JPO,
2232  year = {1991},
2233  volume = {21},
2234  pages = {1349--1371}
2235}
2236
2237@INBOOK{Madec_Crepon_Bk91,
2238  chapter = {Thermohaline-driven deep water formation in the Northwestern Mediterranean
2239   Sea},
2240  pages = {241--265},
2241  title = {Deep convection and deep water formation in the oceans},
2242  publisher = {Elsevier Oceanographic Series, P.C. Chu and J.C. Gascard (Eds.)},
2243  year = {1991},
2244  author = {G. Madec and M. Cr\'{e}pon}
2245  }
2246
2247@ARTICLE{Madec1997,
2248  author = {G. Madec and P. Delecluse},
2249  title = {The OPA/ARPEGE and OPA/LMD Global Ocean-Atmosphere Coupled Model},
2250  journal = {Int. WOCE Newsletter},
2251  year = {1997},
2252  volume = {26},
2253  pages = {12--15}
2254}
2255
2256@TECHREPORT{Madec1998,
2257  author = {G. Madec and P. Delecluse and M. Imbard and C. Levy},
2258  title = {OPA 8 Ocean General Circulation Model - Reference Manual},
2259  institution = {LODYC/IPSL Note 11},
2260  year = {1998}
2261}
2262
2263@ARTICLE{Madec_Imbard_CD96,
2264  author = {G Madec and M Imbard},
2265  title = {A global ocean mesh to overcome the north pole singularity},
2266  journal = CD,
2267  year = {1996},
2268  volume = {12},
2269  pages = {381--388}
2270}
2271
2272@ARTICLE{Madec_al_JPO96,
2273  author = {G. Madec and F. Lott and P. Delecluse and M. Cr\'{e}pon},
2274  title = {Large-Scale Preconditioning of Deep-Water Formation in the Northwestern
2275   Mediterranean Sea},
2276  journal = JPO,
2277  year = {1996},
2278  volume = {26},  number = {8},
2279  pages = {1393--1408},
2280}
2281
2282@ARTICLE{Madec_al_OM88,
2283  author = {G. Madec and C. Rahier and M. Chartier},
2284  title = {A comparison of two-dimensional elliptic solvers for the streamfunction
2285   in a multilevel OGCM},
2286  journal = OM,
2287  year = {1988},
2288  volume = {78},
2289  pages = {1-6}
2290}
2291
2292@ARTICLE{Maes_al_CD98,
2293  author = {C. Maes and P. Delecluse and G. Madec},
2294  title = {Impact of westerly wind bursts on the warm pool of the TOGA-COARE
2295   domain in an OGCM},
2296  journal = CD,
2297  year = {1998},
2298  volume = {14},
2299  pages = {55--70}
2300}
2301
2302@ARTICLE{Maes_al_MWR97,
2303  author = {C. Maes and G. Madec and P. Delecluse},
2304  title = {Sensitivity of an Equatorial Pacific OGCM to the lateral diffusion},
2305  journal = MWR,
2306  year = {1997},
2307  volume = {125},  number = {5},
2308  pages = {958--971}
2309}
2310
2311@ARTICLE{Maggiore_al_PCE98,
2312  author = {A. Maggiore and  M. Zavatarelli and M. G. Angelucci and N. Pinardi},
2313  title = {Surface heat and water fluxes in the Adriatic Sea: seasonal and interannual variability},
2314  journal = {Phys Chem Earth},
2315  year = {1998},
2316  volume = {23},
2317  pages = {561--567}
2318}
2319
2320@ARTICLE{Maltrud1998,
2321  author = {M. E. Maltrud and R. D. Smith and A. J. Semtner and R. C. Malone},
2322  title = {Global eddy-resolving ocean simulations driven by 1985-1995 atmospheric
2323   winds},
2324  journal = JGR,
2325  year = {1998},
2326  volume = {103},  number = {C13},
2327  pages = {30,825--30,854}
2328}
2329
2330@ARTICLE{Marchesiello2001,
2331  author = { P. Marchesiello and J. Mc Williams and A. Shchepetkin },
2332  title = {Open boundary conditions for long-term integrations of Regional Oceanic
2333   Models},
2334  journal = OM,
2335  year = {2001},
2336  volume = {3},
2337  pages = {1--20}
2338}
2339
2340@ARTICLE{Marsaleix_al_OM08,
2341  author = {P. Marsaleix and F. Auclair and J. W. Floor and M. J. Herrmann and
2342   C. Estournel and I. Pairaud and C. Ulses},
2343  title = {Energy conservation issues in sigma-coordinate free-surface ocean
2344   models},
2345  journal = OM,
2346  year = {2008},
2347  volume = {20},  number = {1},
2348  pages = {61--89},
2349  doi = {10.1016/j.ocemod.2007.07.005},
2350  url = {http://dx.doi.org/10.1016/j.ocemod.2007.07.005}
2351}
2352
2353@Article{Marsh_GMD2015,
2354AUTHOR = {R. Marsh and V. O. Ivchenko and N. Skliris and S. Alderson and G. R. Bigg and G. Madec and A. T. Blaker and Y. Aksenov and B. Sinha and A. C. Coward and J. Le Sommer and N. Merino and V. B. Zalesny},
2355TITLE = {NEMO-ICB (v1.0): interactive icebergs in the NEMO ocean model globally configured at eddy-permitting resolution},
2356JOURNAL = {Geoscientific Model Development},
2357VOLUME = {8},
2358YEAR = {2015},
2359NUMBER = {5},
2360PAGES = {1547--1562},
2361url = {HTTP://www.geosci-model-dev.net/8/1547/2015/},
2362DOI = {10.5194/gmd-8-1547-2015}
2363}
2364
2365@article{Martin_Adcroft_OM10,
2366author = {T. Martin and A. Adcroft},
2367title = {Parameterizing the fresh-water flux from land ice to ocean with interactive icebergs in a coupled climate model},
2368journal = OM,
2369year = {2010},
2370volume = {34}, number = {3--4},
2371pages = {111--124},
2372issn = {1463-5003},
2373doi = {10.1016/j.ocemod.2010.05.001},
2374url = {http://dx.doi.org/10.1016/j.ocemod.2010.05.001}
2375}
2376
2377@BOOK{MIT-GCM_2004,
2378  title = {MIT-gcm User Manual},
2379  year = {2004},
2380  editor = {MIT Department of EAPS},
2381  author = {J. Marshall and A. Adcroft and J.-M. Campin and P. Heimbach and A.
2382   Molod and S. Dutkiewicz and H. Hill and M. Losch and B. Fox-Kemper
2383   and D. Menemenlis and D. Ferreira and E. Hill and M. Follows and
2384   C. Hill and C. Evangelinos and G. Forget}
2385   }
2386
2387@PHDTHESIS{Marti_PhD92,
2388  author = {O. Marti},
2389  title = {Etude de l'oc\'{e}an mondial : mod\'{e}lisation de la circulation
2390   et du transport de traceurs anthropog\'{e}niques},
2391  school = {Universit\'{e} Pierre et Marie Curie, Paris, France, 201pp},
2392  year = {1992}
2393}
2394
2395@ARTICLE{Marti_al_CD10,
2396  author = {O. Marti and P. Braconnot and J.-L. Dufresne and J. Bellier and R.
2397   Benshila and S. Bony and P. Brockmann and P. Cadule and A. Caubel
2398   and F Codron and S. Denvil and L. Fairhead and T. Fichefet and M.-A.
2399   Filiberti and M.-A. Foujols and P. Friedlingstein and H. Goosse and
2400   J.-Y. Grandpeix and E. Guilyardi and F. Hourdin and G. Krinner and
2401   C. L\'{e}vy and G. Madec and J. Mignot and I. Musat and D. Swingedouw
2402   and C. Talandier},
2403  title = {Key features of the IPSL ocean atmosphere model and its sensitivity
2404   to atmospheric resolution},
2405  journal = CD,
2406  year = {2010},
2407  volume = {34},  number = {1},
2408  pages = {1--26},
2409  doi = {10.1007/s00382-009-0640-6},
2410  url = {http://dx.doi.org/10.1007/s00382-009-0640-6}
2411}
2412
2413@ARTICLE{Marti_al_JGR92,
2414  author = {O. Marti and G. Madec and P. Delecluse},
2415  title = {Comment on "Net diffusivity in ocean general circulation models with
2416   nonuniform grids" by F. L. Yin and I. Y. Fung},
2417  journal = JGR,
2418  year = {1992},
2419  volume = {97},
2420  pages = {12,763--12,766}
2421}
2422
2423@INBOOK{Masson_al_Bk08,
2424  chapter = {OPA9 - French experiments on the Earth Simulator and Teraflop Workbench
2425   tunings},
2426  pages = {25-34},
2427  title = {In High Performance computing on Vector System 2007, Stuttgart, Germany},
2428  publisher = {Springer-Verlag},
2429  year = {2008},
2430  editor = {Resch M, Roller S, Lammers P, Furui T, Galle M, Bez W},
2431  author = {S. Masson and M.-A. Foujols and P. Klein and G. Madec and L. Hua and M. Levy
2432  and H. Sasaki and K. Takahashi and F. Svensson},
2433  doi = {10.1007/978-3-540-74384-2},
2434  url = {http://dx.doi.org/10.1007/978-3-540-74384-2}
2435}
2436
2437@ARTICLE{Masson_al_GRL05,
2438  author = {S. Masson and J.-J. Luo and G. Madec and J. Vialard and F. Durand
2439   and S. Gualdi and E. Guilyardi and S. Behera and P. Delecluse and
2440   A. Navarra and T. Yamagata},
2441  title = {Impact of barrier layer on winter-spring variability of the South-Eastern
2442   Arabian Sea},
2443  journal = GRL,
2444  year = {2005},
2445  volume = {32},
2446  pages = {L07703},
2447  doi = {10.1029/2004GL021980},
2448  url = {http://dx.doi.org/10.1029/2004GL021980}
2449}
2450
2451@ARTICLE{McDougall1987,
2452  author = {T. J. McDougall},
2453  title = {Neutral Surfaces},
2454  journal = JPO,
2455  year = {1987},
2456  volume = {17},  number = {11},
2457  pages = {1950--1964},
2458}
2459
2460@ARTICLE{McDougall_Taylor_JMR84,
2461  author = {T. J. McDougall and J. R. Taylor},
2462  title = {Flux measurements across a finger interface at low values of the stability ratio},
2463  journal = JMR,
2464  year = {1984},
2465  volume = {42},
2466  pages = {1--14}
2467}
2468
2469@ARTICLE{Mellor_Blumberg_JPO04,
2470author = {G. Mellor and A. Blumberg},
2471title = {Wave Breaking and Ocean Surface Layer Thermal Response},
2472journal = JPO,
2473volume = {34}, number = {3},
2474pages = {693--698},
2475year = {2004},
2476doi = {10.1175/2517.1},
2477URL = {http://journals.ametsoc.org/doi/abs/10.1175/2517.1}
2478}
2479
2480@ARTICLE{Mellor_Yamada_1982,
2481  author = {G. L. Mellor and T. Yamada},
2482  title = {Development of a turbulence closure model for geophysical fluid problems},
2483  journal = RGSP,
2484  year = {1982},
2485  volume = {20},
2486  pages = {851--875}
2487}
2488
2489@ARTICLE{Menkes_al_JPO06,
2490  author = {C. Menkes and J. Vialard and S C. Kennan and J.-P. Boulanger and G. Madec},
2491  title = {A modelling study of the three-dimensional heat budget of Tropical
2492    Instability Waves in the Equatorial Pacific},
2493  journal = JPO,
2494  year = {2006},
2495  volume = {36},  number = {5},
2496  pages = {847--865}
2497}
2498
2499@ARTICLE{Merryfield1999,
2500  author = {W. J. Merryfield and G. Holloway and A. E. Gargett},
2501  title = {A Global Ocean Model with Double-Diffusive Mixing},
2502  journal = JPO,
2503  year = {1999},
2504  volume = {29},  number = {6},
2505  pages = {1124--1142}
2506}
2507
2508@BOOK{Mesinger_Arakawa_Bk76,
2509  title = {Numerical methods used in Atmospheric models},
2510  publisher = {GARP Publication Series No 17},
2511  year = {1976},
2512  author = {F. Mesinger and A. Arakawa}
2513}
2514
2515@ARTICLE{Morel_JGR88,
2516  author = {A. Morel},
2517  title = {Optical modeling of the upper ocean in relation to its biogenous matter content (Case I waters)},
2518  journal = JGR,
2519  year = {1988},
2520  volume = {93},
2521  pages = {10,749--10,768}
2522}
2523
2524@ARTICLE{Morel_Berthon_LO89,
2525  author = {A. Morel and J.-F. Berthon},
2526  title = {Surface pigments, algal biomass profiles, and potential production of the euphotic layer:
2527           Relationships reinvestigated in view of remote-sensing applications},
2528  journal = {Limnol. Oceanogr.},
2529  year = {1989},
2530  volume = {34(8)},
2531  pages = {1545--1562}
2532}
2533
2534@ARTICLE{Morel_Maritorena_JGR01,
2535  author = {A. Morel and S. Maritorena},
2536  title = {Bio-optical properties of oceanic waters: a reappraisal},
2537  journal = JGR,
2538  year = {2001},
2539  volume = {106}, number = {C4},
2540  pages = {7163--7180}
2541}
2542
2543@ARTICLE{Moun_al_JPO02,
2544  author = {J.N. Moum and D.R. Caldwell and J.D. Nash and G.D. Gunderson},
2545  title = {Observations of boundary mixing over the continental slope},
2546  journal = JPO,
2547  year = {2002},
2548  volume = {32}, number = {7},
2549  pages = {2113--2130}
2550}
2551
2552@ARTICLE{Murray_JCP96,
2553  author = {R. J. Murray},
2554  title = {Explicit Generation of Orthogonal Grids for Ocean Models},
2555  journal = JCP,
2556  year = {1996},
2557  volume = {126},  number = {2},
2558  pages = {251--273},
2559}
2560
2561@ARTICLE{Oddo_al_OS09,
2562  author = {P. Oddo and M. Adani and N. Pinardi and C. Fratianni and M. Tonani and D. Pettenuzzo},
2563  title = {A nested Atlantic-Mediterranean Sea general circulation model for operational forecasting},
2564  journal = OS,
2565  year = {2009},
2566  volume = {5},
2567  pages = {1--13},
2568}
2569
2570@PHDTHESIS{Olivier_PhD01,
2571  author = {F. Olivier},
2572  title = {Etude de l'activit\'{e} biologique et de la circulation oc\'{e}anique
2573   dans un jet g\'{e}ostrophique: le front Alm\'{e}ria-Oran},
2574  school = {Universit\'{e} Pierre et Marie Curie, Paris, France},
2575  year = {2001}
2576}
2577
2578@ARTICLE{Osborn_JPO80,
2579  author = {T.R. Osborn},
2580  title = {Estimates of the local rate of vertical diffusion from dissipation measurements},
2581  journal = JPO,
2582  year = {1980},
2583  volume = {10},
2584  pages = {83--89}
2585}
2586
2587@ARTICLE{Pacanowski_Philander_JPO81,
2588  author = {R.C. Pacanowski and S.G.H. Philander},
2589  title = {Parameterization of Vertical Mixing in Numerical Models of Tropical Oceans},
2590  journal = JPO,
2591  year = {1981},
2592  volume = {11},  number = {11},
2593  pages = {1443--1451}
2594}
2595
2596@ARTICLE{Pacanowski_Gnanadesikan_MWR98,
2597  author = {R. C. Pacanowski and A. Gnanadesikan},
2598  title = {Transient response in a z-level ocean model that resolves topography with partial-cells},
2599  journal = MWR,
2600  year = {1998},
2601  volume = {126},
2602  pages = {3248--3270}
2603}
2604
2605@ARTICLE{Park_al_JC09,
2606  author = {W. Park and N. Keenlyside and M. Latif and A. Str\¨{o}h and R. Redler and E. Roeckner and G. Madec},
2607  title = {Tropical Pacific Climate and its Response to Global Warming in the
2608   Kiel Climate Model},
2609  journal = JC,
2610  year = {2009},
2611  volume = {22},  number = {1},
2612  pages = {71--92},
2613  doi = {10.1175/2008JCLI2261.1},
2614  url = {http://dx.doi.org/10.1175/2008JCLI2261.1}
2615}
2616
2617@ARTICLE{Paulson1977,
2618  author = {C. A. Paulson and J. J. Simpson},
2619  title = {Irradiance Measurements in the Upper Ocean},
2620  journal = JPO,
2621  year = {1977},
2622  volume = {7},  number = {6},
2623  pages = {952--956}
2624}
2625
2626@ARTICLE{Payne_JAS72,
2627  author = {R. E. Payne},
2628  title = {Albedo of the Sea Surface},
2629  journal = JAS,
2630  year = {1972},
2631  volume = {29},
2632  pages = {959--970}
2633}
2634
2635@ARTICLE{Penduff_al_OM06,
2636  author = {T. Penduff and B. Barnier and J.-M. Molines and G. Madec},
2637  title = {On the use of current meter data to assess the realism of ocean model simulations},
2638  journal = OM,
2639  year = {2006},
2640  volume = {11},  number = {3--4},
2641  pages = {399--416}
2642}
2643
2644@ARTICLE{Penduff_al_JGR00,
2645  author = {T. Penduff and B. Barnier and A. Colin de Verdi\`{e}re},
2646  title = {Self-adapting open boundaries for a regional model of the eastern North Atlantic},
2647  journal = JGR,
2648  year = {2000},
2649  volume = {105},
2650  pages = {11,279--11,297}
2651}
2652
2653@ARTICLE{Penduff_al_OS07,
2654  author = {T. Penduff and J. Le Sommer and B. Barnier and A.M. Treguier and J. Molines and G. Madec},
2655  title = {Influence of numerical schemes on current-topography interactions
2656   in 1/4$^{\circ}$ global ocean simulations},
2657  journal = OS,
2658  year = {2007},
2659  volume = {3},
2660  pages = {509--524}
2661}
2662
2663@ARTICLE{Phillips1959,
2664  author = {R. S. Phillips},
2665  title = {Dissipative Operators and Hyperbolic Systems of Partial Differential Equations},
2666  journal = {Transactions of the American Mathematical Society},
2667  year = {1959},
2668  volume = {90},  number = {2},
2669  pages = {193--254},
2670  doi = {10.2307/1993202},
2671  url = {http://dx.doi.org/10.2307/1993202}
2672}
2673
2674@ARTICLE{Le_Quere_al_GBC00,
2675  author = {C. Le Qu\'{e}r\'{e} and J. C. Orr and P. Monfray and O. Aumont and G. Madec},
2676  title = {Interannual variability of the global and regional sea-air flux of C02 from 1979 to 1993},
2677  journal = GBC,
2678  year = {2000},
2679  volume = {14},
2680  pages = {1247--1266}
2681}
2682
2683@ARTICLE{Raynaud_al_GRL00,
2684  author = {S. Raynaud and S. Speich and E. Guilyardi and G. Madec},
2685  title = {Impact of the ocean lateral diffusion on the ENSO-like variability of a global coupled GCM},
2686  journal = GRL,
2687  year = {2000},
2688  volume = {27},  number = {19},
2689  pages = {3041--3044}
2690}
2691
2692@ARTICLE{Redi_JPO82,
2693  author = {M. H. Redi},
2694  title = {Oceanic isopycnal mixing by coordinate rotation},
2695  journal = JPO,
2696  year = {1982},
2697  volume = {13},
2698  pages = {1154--1158}
2699}
2700
2701@ARTICLE{Reed_JPO77,
2702  author = {R. K. Reed},
2703  title = {On estimating insolation over the ocean},
2704  journal = JPO,
2705  year = {1977},
2706  volume = {1},
2707  pages = {874--971}
2708}
2709
2710@ARTICLE{Reverdin1991,
2711  author = {G. Reverdin and P. Delecluse and C. L\'{e}vy and P. Andrich and A. Morli\`{e}re and J. M. Verstraete},
2712  title = {The near surface tropical Atlantic in 1982-1984 : results from a numerical simulation and a data analysis},
2713  journal = PO,
2714  year = {1991},
2715  volume = {27},
2716  pages = {273--340}
2717}
2718
2719@BOOK{Richtmyer1967,
2720  title = {Difference methods for initial-value problems},
2721  publisher = {Interscience Publisher, Second Edition},
2722  year = {1967},
2723  author = {R. D. Richtmyer and K. W. Morton},
2724  pages = {405pp}
2725}
2726
2727@ARTICLE{Robert_JMSJ66,
2728  author = {A. J. Robert},
2729  title = {The integration of a Low order spectral form of the primitive meteorological equations},
2730  journal = JMSJ,
2731  year = {1966},
2732  volume = {44},  number = {2}
2733}
2734
2735@ARTICLE{Rodgers_al_GRL04,
2736  author = {K. Rodgers and O. Aumont and G. Madec and C. Menkes},
2737  title = {Radiocarbon as a thermocline proxy for the eastern equatorial Pacific},
2738  journal = GRL,
2739  year = {2004},
2740  volume = {31},
2741  pages = {L14314},
2742  doi = {10.1029/2004GL019764},
2743  url = {http://dx.doi.org/10.1029/2004GL019764}
2744}
2745
2746@ARTICLE{Rodgers_al_GRL03,
2747  author = {K. Rodgers and B. Blanke and G. Madec and O. Aumont and P. Ciais and J.-C. Dutay},
2748  title = {Extratropical sources of equatorial pacific upwelling in an OGCM},
2749  journal = GRL,
2750  year = {2003},
2751  volume = {30},  number = {2},
2752  doi = {10.1029/2002GL016003},
2753  url = {http://dx.doi.org/10.1029/2002GL016003}
2754}
2755
2756@Article{Rodgers_2014,
2757AUTHOR = {Rodgers, K. B. and Aumont, O. and Mikaloff Fletcher, S. E. and Plancherel, Y. and Bopp, L. and de Boyer Mont\'egut, C. and Iudicone, D. and Keeling, R. F. and Madec, G. and Wanninkhof, R.},
2758TITLE = {Strong sensitivity of Southern Ocean carbon uptake and nutrient cycling to wind stirring},
2759JOURNAL = {Biogeosciences},
2760VOLUME = {11},
2761YEAR = {2014},
2762NUMBER = {15},
2763PAGES = {4077--4098},
2764URL = {HTTP://www.biogeosciences.net/11/4077/2014/},
2765DOI = {10.5194/bg-11-4077-2014}
2766}
2767
2768@ARTICLE{Rodi_1987,
2769  author = {W. Rodi},
2770  title = {Examples of calculation methods for flow and mixing in stratified fluids},
2771  journal = JGR,
2772  year = {1987},
2773  volume = {92},  number = {C5},
2774  pages = {5305--5328}
2775}
2776
2777@INCOLLECTION{Roed1986,
2778  author = {L.P. Roed and C.K. Cooper},
2779  title = {Open boundary conditions in numerical ocean models},
2780  booktitle = {Advanced Physical Oceanography Numerical Modelling},
2781  publisher = { NATO ASI Series, vol. 186.},
2782  year = {1986},
2783  editor = {J.J. O'Brien}
2784}
2785
2786@article{Roquet_OM2015,
2787author = "F. Roquet and G. Madec and T.J. McDougall and P.M. Barker",
2788title = "Accurate polynomial expressions for the density and specific volume of seawater using the TEOS-10 standard ",
2789journal = OM,
2790volume = "90",
2791pages = "29--43",
2792year = "2015",
2793issn = "1463-5003",
2794doi = "10.1016/j.ocemod.2015.04.002",
2795url = "http://dx.doi.org/10.1016/j.ocemod.2015.04.002"
2796}
2797
2798@article{Roquet_JPO2015,
2799author = "F. Roquet and G. Madec and L. Brodeau and J. Nycander",
2800title = "Defining a Simplified Yet Realistic Equation of State for Seawater",
2801journal = JPO,
2802volume = "45",
2803pages = "2564--2579",
2804year = "2015",
2805doi = "10.1175/JPO-D-15-0080.1",
2806url = "http://dx.doi.org/10.1175/JPO-D-15-0080.1"
2807}
2808
2809@ARTICLE{Roullet_Madec_JGR00,
2810  author = {G. Roullet and G. Madec},
2811  title = {salt conservation, free surface, and varying levels: a new formulation
2812   for ocean general circulation models},
2813  journal = JGR,
2814  year = {2000},
2815  volume = {105},
2816  pages = {23,927--23,942}
2817}
2818
2819@ARTICLE{Rousset_GMD2015,
2820  author = {C. Rousset and M. Vancoppenolle and G. Madec and T. Fichefet and S. Flavoni
2821            and A. Barth\'{e}lemy and R. Benshila and J. Chanut and C. L\'{e}vy and S. Masson and F. Vivier },
2822  title  = {The Louvain-La-Neuve sea-ice model LIM3.6: Global and regional capabilities},
2823  journal= {Geoscientific Model Development},
2824  year = {2015},
2825  volume = {8}, pages={2991--3005},
2826  doi = {10.5194/gmd-8-2991-2015},
2827  url = {http://dx.doi.org/10.5194/gmd-8-2991-2015}
2828}
2829
2830@ARTICLE{Sadourny1975,
2831  author = {R. Sadourny},
2832  title = {The Dynamics of Finite-Difference Models of the Shallow-Water Equations},
2833  journal = JAS,
2834  year = {1975},
2835  volume = {32},  number = {4},
2836  pages = {680--689},
2837}
2838
2839@ARTICLE{Sarmiento1982,
2840  author = {J. L. Sarmiento and K. Bryan},
2841  title = {Ocean transport model for the North Atlantic},
2842  journal = JGR,
2843  year = {1982},
2844  volume = {87},
2845  pages = {394--409}
2846}
2847
2848@ARTICLE{Saunders_JAS82,
2849  author={P. M. Saunders},
2850  title={{The Temperature at the Ocean-air Interface}},
2851  journal=JAS,
2852  year={1967},
2853  volume={24},
2854  pages={269-273},
2855  doi = {10.1175/1520-0469(1967)024<0269:TTATOA>2.0.CO;2},
2856}
2857
2858@BOOK{Shchepetkin_McWilliams_Bk08,
2859  author = {A. F. Shchepetkin and J. C. McWilliams},
2860  title = {Handbook of Numerical Analysis, Vol. XIV: Computational Methods for the Ocean and the Atmosphere, pp 121-183},
2861  publisher = {P. G. Ciarlet, editor, R. Temam and J. Tribbia, guest eds., Elsevier Science},
2862  year = {2008},
2863  pages = {784}
2864}
2865
2866@ARTICLE{Shchepetkin_McWilliams_OM05,
2867  author = {A. F. Shchepetkin and J. C. McWilliams},
2868  title = {The regional oceanic modeling system (ROMS) - a split-explicit, free-surface,
2869   topography-following-coordinate oceanic modelr},
2870  journal = OM,
2871  year = {2005},
2872  volume = {9},  number = {4},
2873  pages = {347--404}
2874}
2875
2876@ARTICLE{Sacha2003,
2877  author = {A. F. Shchepetkin and J. C. McWilliams},
2878  title = {A method for computing horizontal pressure-gradient force in an oceanic
2879   model with a nonaligned vertical coordinate},
2880  journal = JGR,
2881  year = {2003},
2882  volume = {108},  number = {C3},
2883  pages = {3090},
2884  doi = {10.1029/2001JC001047},
2885  url = {http://dx.doi.org/10.1029/2001JC001047}
2886}
2887
2888@ARTICLE{Shchepetkin1996,
2889  author = {A. F. Shchepetkin and J. J. O'Brien},
2890  title = {A Physically Consistent Formulation of Lateral Friction in Shallow-Water Equation Ocean Models},
2891  journal = MWR,
2892  year = {1996},
2893  volume = {124},  number = {6},
2894  pages = {1285--1300}
2895}
2896
2897@ARTICLE{Siddorn_Furner_OM12,
2898  author = {J. Siddorn and R. Furner},
2899  title = {An analytical stretching function that combines the best attributes of geopotential and terrain-following vertical coordinates},
2900  journal = OM,
2901  year = {2012},
2902  pages = {submitted},
2903}
2904@ARTICLE{Simmons_al_OM04,
2905  author = {H. L. Simmons and S. R. Jayne and L. C. {St. Laurent} and A. J. Weaver},
2906  title = {Tidally driven mixing in a numerical model of the ocean general circulation},
2907  journal = OM,
2908  year = {2004},
2909  pages = {245--263},
2910}
2911
2912@INBOOK{Smagorinsky_93,
2913  author = {Smagorinsky, J.},
2914  chapter = {Some historical remarks on the use of non-linear viscosities},
2915  title = {Large Eddy Simulation of Complex Engineering and Geophysical Flows},
2916  pages = {3--36},
2917  year = {1993},
2918  publisher = {Cambridge University Press, B. Galperin and S. A. Orszag (eds.)},
2919}
2920
2921@ARTICLE{Song_Haidvogel_JCP94,
2922  author = {Y. Song and D. Haidvogel},
2923  title = {A semi-implicit ocean circulation model using a generalized topography-following coordinate system},
2924  journal = JCP,
2925  year = {1994},
2926  volume = {115},  number = {1},
2927  pages = {228--244}
2928}
2929
2930@ARTICLE{Song1998,
2931  author = {Y. T. Song},
2932  title = {A General Pressure Gradient Formulation for Ocean Models. Part I: Scheme Design and Diagnostic Analysis},
2933  journal = MWR,
2934  year = {1998},
2935  volume = {126},  number = {12},
2936  pages = {3213--3230}
2937}
2938
2939@ARTICLE{SongWright1998,
2940  author = {Y. T. Song and D. G. Wright},
2941  title = {A General Pressure Gradient Formulation for Ocean Models.
2942    Part II: Energy, Momentum, and Bottom Torque Consistency},
2943  journal = MWR,
2944  year = {1998},
2945  volume = {126},  number = {12},
2946  pages = {3231--3247}
2947}
2948
2949@ARTICLE{Speer_al_Tel00,
2950  author = {K. Speer and E. Guilyardi and G. Madec},
2951  title = {Southern Ocean transformation in a coupled model with and without eddy mass fluxes},
2952  journal = {Tellus},
2953  year = {2000},
2954  volume = {52A},  number = {5},
2955  pages = {554--565}
2956}
2957
2958@PHDTHESIS{Speich_PhD92,
2959  author = {S. Speich},
2960  title = {Etude du for\c{c}age de la circulation g\'{e}n\'{e}rale oc\'{e}anique
2961   par les d\'{e}troits - cas de la mer d'Alboran},
2962  school = {Universit\'{e} Pierre et Marie Curie, Paris, France},
2963  year = {1992}
2964}
2965
2966@ARTICLE{Speich_al_GRL01,
2967  author = {S. Speich and B. Blanke and G. Madec},
2968  title = {Warm and cold water paths of an OGCM thermohaline conveyor belt},
2969  journal = GRL,
2970  year = {2001},
2971  volume = {28},  number = {2},
2972  pages = {311--314}
2973}
2974
2975@ARTICLE{Speich_al_JPO96,
2976  author = {S. Speich and G. Madec and M. Cr\'{e}pon},
2977  title = {The circulation in the Alboran Sea - a sensitivity study},
2978  journal = JPO,
2979  year = {1996},
2980  volume = {26},  number = {3},
2981  pages = {320--340}
2982}
2983
2984@ARTICLE{St_Laurent_Garrett_JPO02,
2985  author = {L.C. {St. Laurent} and C. Garrett},
2986  title = {The role of internal tides in mixing the deep ocean},
2987  journal = JPO,
2988  pages = {2882--2899}
2989}
2990
2991@ARTICLE{St_Laurent_Nash_DSR04,
2992  author = {L.C. {St. Laurent} and J. D. Nash},
2993  title = {An examination of the radiative and dissipative properties of deep ocean internal tides},
2994  journal = DSR,
2995  year = {2004},
2996  volume = {II},  number = {51},
2997  pages = {3029--3042},
2998  doi = {10.1016/j.dsr2.2004.09.008},
2999  url = {http://dx.doi.org/10.1016/j.dsr2.2004.09.008}
3000}
3001
3002@ARTICLE{St_Laurent_al_GRL02,
3003  author = {L.C. {St. Laurent} and H.L. Simmons and S.R. Jayne},
3004  title = {Estimating tidally driven mixing in the deep ocean},
3005  journal = GRL,
3006  year = {2002},
3007  volume = {29},
3008  pages = {2106},
3009  doi = {10.1029/2002GL015633},
3010  url = {http://dx.doi.org/10.1029/2002GL015633}
3011}
3012
3013@ARTICLE{Stacey_JPO99,
3014  author = {M. W. Stacey},
3015  title = {Simulations of the wind-forced near-surface circulation in Knight Inlet:
3016             A parameterization of the roughness length},
3017  journal = JPO,
3018  year = {1999},
3019  volume = {29},
3020  pages = {1363--1367},
3021}
3022
3023@ARTICLE{Steele2001,
3024  author = {M. Steele and R. Morley and W. Ermold},
3025  title = {PHC- A Global Ocean Hydrography with a High-Quality Arctic Ocean},
3026  journal = JC,
3027  year = {2001},
3028  volume = {14},  number = {9},
3029  pages = {2079--2087},
3030}
3031
3032@ARTICLE{Stein_Stein_Nat92,
3033  author = {C. A. Stein and S. Stein},
3034  title = {A model for the global variation in oceanic depth and heat flow with lithospheric age},
3035  journal = {Nature},
3036  year = {1992},
3037  volume = {359},
3038  pages = {123--129}
3039}
3040
3041@ARTICLE{Takaya_al_JGR10,
3042  author = {Y. Takaya and J-R. Bidlot and A. C. M. Beljaars and
3043                  P. A. E. M. Janssen},
3044  title = {Refinements to a prognostic scheme of sea surface skin temperature},
3045  journal = JGR,
3046  year   =   {2010},
3047  Volume =   {115},
3048  Pages  =   {C06009},
3049  doi    = {10.1029/2009JC005985},
3050}
3051
3052@ARTICLE{Talagrand_JAS72,
3053  author = {O. Talagrand},
3054  title = {On the damping of high-frequency motions in four-dimensional
3055           assimilation of meteorological data},
3056  journal = JAS,
3057  year = {1972},
3058  volume = {29},
3059  pages = {1571-1574}
3060}
3061
3062@ARTICLE{Thiem_Berntsen_OM06,
3063  author = {O. Thiem and J. Berntsen},
3064  title = {Internal pressure errors in sigma-coordinate ocean models due to anisotropy},
3065  journal = OM,
3066  year = {2006},
3067  volume = {12},  number = {1-2},
3068}
3069
3070@ARTICLE{Timmermann_al_OM05,
3071  author = {R. Timmermann and H. Goosse and G. Madec and T. Fichefet and C. \'{E}the and V. Duli\`{e}re},
3072  title = {On the representation of high latitude processes in the ORCA-LIM global coupled sea ice-ocean model},
3073  journal = OM,
3074  year = {2005},
3075  volume = {8},
3076  pages = {175--201}
3077}
3078
3079@ARTICLE{Tonani_al_OS08,
3080  author = {M. Tonani and N. Pinardi and S. Dobricic and I. Pujol and C. Fratianni},
3081  title = {A high-resolution free-surface model of the Mediterranean Sea},
3082  journal = OS,
3083  year = {2008},
3084  volume = {4},
3085  pages = {1--14}
3086}
3087
3088@ARTICLE{Treguier_JGR92,
3089  author = {A.M. Tr\'{e}guier},
3090  title = {Kinetic energy analysis of an eddy resolving, primitive equation North Atlantic model},
3091  journal = JGR,
3092  year = {1992},
3093  volume = {97},
3094  pages = {687--701}
3095}
3096
3097@ARTICLE{Treguier_al_JGR01,
3098  author = {A.M. Tr\'{e}guier and B. Barnier and A.P. de Miranda and J.M. Molines
3099    and N. Grima and M. Imbard and G. Madec and C. Messager and T. Reynaud and S. Michel},
3100  title = {An Eddy Permitting model of the Atlantic circulation: evaluating open boundary conditions},
3101  journal = JGR,
3102  year = {2001},
3103  volume = {106},
3104  pages = {22,115--22,129}
3105}
3106
3107@ARTICLE{Treguier_al_DSR03,
3108  author = {A.-M. Tr\'{e}guier and O. Boedel and B. Barnier and G. Madec},
3109  title = {Agulhas eddy fluxes in a 1/6^o Atlantic model},
3110  journal = DSR,
3111  year = {2003},
3112  pages = {251--280}
3113}
3114
3115@ARTICLE{Treguier1996,
3116  author = {A.-M. Tr\'{e}guier and J. Dukowicz and K. Bryan},
3117  title = {Properties of nonuniform grids used in ocean general circulation models},
3118  journal = JGR,
3119  year = {1996},
3120  volume = {101},
3121  pages = {20,877--20,881}
3122}
3123
3124@ARTICLE{Treguier_al_OS07,
3125  author = {A.-M. Tr\'{e}guier and M. H. England and S. R. Rintoul and G. Madec and J. Le Sommer and J.-M. Molines},
3126  title = {Southern Ocean overturning across streamlines in an eddying simulation of the Antarctic Circumpolar Current},
3127  journal = OS,
3128  year = {2007},
3129  volume = {4},
3130  pages = {653--698}
3131}
3132
3133@ARTICLE{Treguier_al_OD06,
3134  author = {A.-M. Tr\'{e}guier and C. Gourcuff and P. Lherminier and H. Mercier and B. Barnier
3135  and G. Madec and J.-M. Molines and T. Penduff and L. Czeschel and C. Böning},
3136  title = {Internal and forced variability along a section between Greenland
3137   and Portugal in the CLIPPER Atlantic model},
3138  journal = OD,
3139  year = {2006},
3140  volume = {56},
3141  pages = {568--580},
3142  doi = {10.1007/s10236-006-0069-y},
3143  url = {http://dx.doi.org/10.1007/s10236-006-0069-y}
3144}
3145
3146@ARTICLE{Treguier1997,
3147  author = {A. M. Tr\'{e}guier and I. M. Held and V. D. Larichev},
3148  title = {Parameterization of Quasigeostrophic Eddies in Primitive Equation Ocean Models},
3149  journal = JPO,
3150  year = {1997},
3151  volume = {27},  number = {4},
3152  pages = {567--580}
3153}
3154
3155@ARTICLE{Tu_Tsuang_GRL05,
3156  title={{Cool-skin simulation by a one-column ocean model}},
3157  author={{C-Y}. Tu  and {B-J}. Tsuang},
3158  journal=GRL,
3159  year={2005},
3160  volume={32},
3161  pages={L22602},
3162  doi = {10.1029/2005GL024252},
3163}
3164
3165@ARTICLE{Umlauf_Burchard_JMS03,
3166  author = {L. Umlauf and H. Burchard},
3167  title = {A generic length-scale equation for geophysical turbulence models},
3168  journal = JMS,
3169  year = {2003},
3170  volume = {61},  number = {2},
3171  pages = {235--265}
3172}
3173
3174@ARTICLE{Umlauf_Burchard_CSR05,
3175  author = {L. Umlauf and H. Burchard},
3176  title = {Second-order turbulence closure models for geophysical boundary layers. A review of recent work},
3177  journal = JMS,
3178  year = {2005},
3179  volume = {25},
3180  pages = {795--827}
3181}
3182
3183@BOOK{UNESCO1983,
3184  title = {Algorithms for computation of fundamental property of sea water},
3185  publisher = {Techn. Paper in Mar. Sci, 44, UNESCO},
3186  year = {1983},
3187  author = {UNESCO}
3188}
3189
3190@TECHREPORT{OASIS2006,
3191  author = {S. Valcke},
3192  title = {OASIS3 User Guide (prism\_2-5)},
3193  institution = {PRISM Support Initiative Report No 3, CERFACS, Toulouse, France},
3194  year = {2006},
3195  pages = {64pp}
3196}
3197
3198@TECHREPORT{Valcke_al_Rep00,
3199  author = {S. Valcke and L. Terray and A. Piacentini },
3200  title = {The OASIS Coupled User Guide Version 2.4},
3201  institution = {CERFACS},
3202  year = {2000},
3203  number = {TR/CMGC/00-10}
3204}
3205
3206@ARTICLE{Vancoppenolle_al_OM09b,
3207  author = {M. Vancoppenolle and T. Fichefet and H. Goosse},
3208  title = {Simulating the mass balance and salinity of Arctic and Antarctic sea ice. 2.
3209     Importance of sea ice salinity variations},
3210  journal = OM,
3211  year = {2009},
3212  volume = {27},
3213  pages = {54--69}
3214}
3215
3216@book{Vallis06,
3217author = {Vallis, G. K.},
3218title = {Atmospheric and Oceanic Fluid Dynamics},
3219publisher = {Cambridge University Press},
3220address = {Cambridge, U.K.},
3221year = {2006},
3222pages = {745},
3223}
3224
3225@ARTICLE{Vancoppenolle_al_OM09a,
3226  author = {M. Vancoppenolle and T. Fichefet and H. Goosse and S. Bouillon and
3227   G. Madec and M. A. Morales Maqueda},
3228  title = {Simulating the mass balance and salinity of Arctic and Antarctic
3229   sea ice. 1. Model description and validation},
3230  journal = OM,
3231  year = {2009},
3232  volume = {27},
3233  pages = {33--53},
3234  doi = {10.1016/j.ocemod.2008.10.005},
3235  url = {http://dx.doi.org/10.1016/j.ocemod.2008.10.005}
3236}
3237
3238@ARTICLE{Vialard_al_JPO01,
3239  author = {J. Vialard and C. Menkes and J.-P. Boulanger and P. Delecluse and
3240   E. Guilyardi and M.J. McPhaden and G. Madec},
3241  title = {A Model Study of Oceanic Mechanisms Affecting Equatorial Pacific
3242   Sea Surface Temperature During the 1997-98 El Niño},
3243  journal = JPO,
3244  year = {2001},
3245  volume = {31},  number = {7},
3246  pages = {1649--1675}
3247}
3248
3249@ARTICLE{Warner_al_OM05,
3250  author = {J. C. Warner and C. R. Sherwood and H. G. Arango and R. P. Signell},
3251  title = {Performance of four turbulence closure models implemented using a generic length scale method},
3252  journal = OM,
3253  year = {2005},
3254  volume = {8},
3255  pages = {81--113},
3256  doi = {10.1016/j.ocemod.2003.12.003},
3257  url = {http://dx.doi.org/j.ocemod.2003.12.003}
3258}
3259
3260@ARTICLE{Weatherly_JMR84,
3261  author = {G. L. Weatherly},
3262  title = {An estimate of bottom frictional dissipation by Gulf Stream fluctuations},
3263  journal = JMR,
3264  year = {1984},
3265  volume = {42},  number = {2},
3266  pages = {289--301}
3267}
3268
3269@ARTICLE{Weaver_Eby_JPO97,
3270  author = {A. J. Weaver and M. Eby},
3271  title = {On the numerical implementation of advection schemes for use in conjuction
3272   with various mixing parameterizations in the GFDL ocean model},
3273  journal = JPO,
3274  year = {1997},
3275  volume = {27}
3276}
3277
3278@ARTICLE{Webb_al_JAOT98,
3279  author = {D. J. Webb and B. A. de Cuevas and C. S. Richmond},
3280  title = {Improved Advection Schemes for Ocean Models},
3281  journal = JAOT,
3282  year = {1998},
3283  volume = {15},  number = {5},
3284  pages = {1171--1187},
3285}
3286
3287@ARTICLE{White_al_JCP09,
3288  author = {L. White and A. Adcroft and R. Hallberg},
3289  title = {High-order regridding-remapping schemes for continuous isopycnal
3290   and generalized coordinates in ocean models},
3291  journal = JC,
3292  year = {2009},
3293  volume = {228},
3294  pages = {8665--8692}
3295}
3296
3297@ARTICLE{Wilcox_1988,
3298  author = {D. C. Wilcox},
3299  title = {Reassessment of the scale-determining equation for advanced turbulence models},
3300  journal = {AIAA journal},
3301  year = {1988},
3302  volume = {26},  number = {11},
3303  pages = {1299--1310}
3304}
3305
3306@ARTICLE{Willebrand_al_PO01,
3307  author = {J. Willebrand and B. Barnier and C. Boning and C. Dieterich and P.
3308   D. Killworth and C. Le Provost and Y. Jia and J.-M. Molines and A. L. New},
3309  title = {Circulation characteristics in three eddy-permitting models of the North Atlantic},
3310  journal = PO,
3311  year = {2001},
3312  volume = {48},  number = {2},
3313  pages = {123--161}
3314}
3315
3316@ARTICLE{Williams_al_DAO09,
3317  author = {P.D. Williams and E. Guilyardi and G. Madec and S. Gualdi and E. Scoccimarro},
3318  title = {The role of mean ocean salinity on climate},
3319  journal = DAO,
3320  year = {2010},
3321  volume = {49},  number = {2-3},
3322  pages = {108--123},
3323  doi = {10.1016/j.dynatmoce.2009.02.001},
3324  url = {http://dx.doi.org/10.1016/j.dynatmoce.2009.02.001}
3325}
3326
3327@ARTICLE{Williams_al_GRL07,
3328  author = {P.D. Williams and E. Guilyardi and R. Sutton and J.M. Gregory and G. Madec},
3329  title = {A new feedback on climate change from the hydrological cycle},
3330  journal = GRL,
3331  year = {2007},
3332  volume = {34},
3333  pages = {L08706},
3334  doi = {10.1029/2007GL029275},
3335  url = {http://dx.doi.org/10.1029/2007GL029275}
3336}
3337
3338@ARTICLE{Williams_al_CD06,
3339  author = {P.D. Williams and E. Guilyardi and R. Sutton and J.M. Gregory and G. Madec},
3340  title = {On the climate response of the low-latitude Pacific ocean to changes in the global freshwater cycle},
3341  journal = CD,
3342  year = {2006},
3343  volume = {27},
3344  pages = {593--611}
3345}
3346
3347@ARTICLE{Zalesak_JCP79,
3348  author = {S. T. Zalesak},
3349  title = {Fully multidimensional flux corrected transport algorithms for fluids},
3350  journal = JCP,
3351  year = {1979},
3352  volume = {31}
3353}
3354
3355@ARTICLE{Zhang_Endoh_JGR92,
3356  author = {Zhang, R.-H. and Endoh, M.},
3357  title = {A free surface general circulation model for the tropical Pacific Ocean},
3358  journal = JGR,
3359  year = {1992},
3360  volume = {97},
3361  pages = {11,237--11,255}
3362}
3363
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