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iom.F90 in branches/2017/dev_r8600_xios_read/NEMOGCM/NEMO/OPA_SRC/IOM – NEMO

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source: branches/2017/dev_r8600_xios_read/NEMOGCM/NEMO/OPA_SRC/IOM/iom.F90 @ 8668

Last change on this file since 8668 was 8668, checked in by andmirek, 6 years ago
#1953 change variable names to follow NEMO coding convention
Property svn:keywords set to `Id`
File size: 112.8 KB

Rev	Line
[544]	1	MODULE iom
	2	!!=====================================================================
	3	!! * MODULE iom *
	4	!! Input/Output manager : Library to read input files
	5	!!====================================================================
[3764]	6	!! History : 2.0 ! 2005-12 (J. Belier) Original code
	7	!! 2.0 ! 2006-02 (S. Masson) Adaptation to NEMO
	8	!! 3.0 ! 2007-07 (D. Storkey) Changes to iom_gettime
	9	!! 3.4 ! 2012-12 (R. Bourdalle-Badie and G. Reffray) add C1D case
[6140]	10	!! 3.6 ! 2014-15 DIMG format removed
[7646]	11	!! 3.6 ! 2015-15 (J. Harle) Added procedure to read REAL attributes
[544]	12	!!--------------------------------------------------------------------
	13
	14	!!--------------------------------------------------------------------
	15	!! iom_open : open a file read only
	16	!! iom_close : close a file or all files opened by iom
	17	!! iom_get : read a field (interfaced to several routines)
[550]	18	!! iom_gettime : read the time axis cdvar in the file
[544]	19	!! iom_varid : get the id of a variable in a file
	20	!! iom_rstput : write a field in a restart file (interfaced to several routines)
	21	!!--------------------------------------------------------------------
	22	USE dom_oce ! ocean space and time domain
[3764]	23	USE c1d ! 1D vertical configuration
[3294]	24	USE flo_oce ! floats module declarations
[679]	25	USE lbclnk ! lateal boundary condition / mpp exchanges
[544]	26	USE iom_def ! iom variables definitions
	27	USE iom_nf90 ! NetCDF format with native NetCDF library
[2715]	28	USE in_out_manager ! I/O manager
	29	USE lib_mpp ! MPP library
[1412]	30	#if defined key_iomput
[1725]	31	USE sbc_oce, ONLY : nn_fsbc ! ocean space and time domain
[3770]	32	USE trc_oce, ONLY : nn_dttrc ! !: frequency of step on passive tracers
[4187]	33	USE icb_oce, ONLY : nclasses, class_num ! !: iceberg classes
[4691]	34	#if defined key_lim3
[5123]	35	USE ice , ONLY : jpl
[4691]	36	#elif defined key_lim2
	37	USE par_ice_2
	38	#endif
[1725]	39	USE domngb ! ocean space and time domain
	40	USE phycst ! physical constants
	41	USE dianam ! build name of file
[3695]	42	USE xios
[8612]	43	USE iom_def, ONLY : max_rst_fields, rst_fields
[1359]	44	# endif
[4148]	45	USE ioipsl, ONLY : ju2ymds ! for calendar
[4152]	46	USE crs ! Grid coarsening
[8612]	47	USE lib_fortran
[1359]	48
[544]	49	IMPLICIT NONE
[556]	50	PUBLIC ! must be public to be able to access iom_def through iom
[550]	51
[1457]	52	#if defined key_iomput
[1725]	53	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .TRUE. !: iom_put flag
[1457]	54	#else
	55	LOGICAL, PUBLIC, PARAMETER :: lk_iomput = .FALSE. !: iom_put flag
	56	#endif
[7646]	57	PUBLIC iom_init, iom_swap, iom_open, iom_close, iom_setkt, iom_varid, iom_get
	58	PUBLIC iom_getatt, iom_putatt, iom_gettime, iom_rstput, iom_put
	59	PUBLIC iom_use, iom_context_finalize
[544]	60
[752]	61	PRIVATE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
	62	PRIVATE iom_g0d, iom_g1d, iom_g2d, iom_g3d, iom_get_123d
[3294]	63	PRIVATE iom_p1d, iom_p2d, iom_p3d
[1412]	64	#if defined key_iomput
[4148]	65	PRIVATE iom_set_domain_attr, iom_set_axis_attr, iom_set_field_attr, iom_set_file_attr, iom_get_file_attr, iom_set_grid_attr
[5363]	66	PRIVATE set_grid, set_grid_bounds, set_scalar, set_xmlatt, set_mooring, iom_update_file_name, iom_sdate
[8612]	67	PRIVATE set_rst_vars, set_rstr_active, set_rst_context
[1359]	68	# endif
[752]	69
[544]	70	INTERFACE iom_get
[550]	71	MODULE PROCEDURE iom_g0d, iom_g1d, iom_g2d, iom_g3d
[544]	72	END INTERFACE
[2528]	73	INTERFACE iom_getatt
[7646]	74	MODULE PROCEDURE iom_g0d_iatt, iom_g0d_ratt, iom_g0d_catt
[2528]	75	END INTERFACE
[7646]	76	INTERFACE iom_putatt
	77	MODULE PROCEDURE iom_p0d_iatt, iom_p0d_ratt, iom_p0d_catt
	78	END INTERFACE
[544]	79	INTERFACE iom_rstput
[550]	80	MODULE PROCEDURE iom_rp0d, iom_rp1d, iom_rp2d, iom_rp3d
[544]	81	END INTERFACE
[1359]	82	INTERFACE iom_put
[3294]	83	MODULE PROCEDURE iom_p0d, iom_p1d, iom_p2d, iom_p3d
[1359]	84	END INTERFACE
[544]	85
	86	!!----------------------------------------------------------------------
[2528]	87	!! NEMO/OPA 3.3 , NEMO Consortium (2010)
[1152]	88	!! $Id$
[2528]	89	!! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
[544]	90	!!----------------------------------------------------------------------
	91
	92	CONTAINS
	93
[4152]	94	SUBROUTINE iom_init( cdname )
[1359]	95	!!----------------------------------------------------------------------
	96	!! * ROUTINE *
	97	!!
	98	!! ** Purpose :
	99	!!
	100	!!----------------------------------------------------------------------
[4152]	101	CHARACTER(len=*), INTENT(in) :: cdname
[1412]	102	#if defined key_iomput
[7646]	103
	104	TYPE(xios_duration) :: dtime = xios_duration(0, 0, 0, 0, 0, 0)
	105	TYPE(xios_date) :: start_date
[3732]	106	CHARACTER(len=10) :: clname
[7646]	107	INTEGER :: ji, jkmin
[8668]	108	LOGICAL :: llrst_context ! is context related to restart
[5415]	109	!
[7646]	110	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zt_bnds, zw_bnds
[1359]	111	!!----------------------------------------------------------------------
[3695]	112
[7646]	113	ALLOCATE( zt_bnds(2,jpk), zw_bnds(2,jpk) )
[5415]	114
[4152]	115	clname = cdname
	116	IF( TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(cdname)
[3732]	117	CALL xios_context_initialize(TRIM(clname), mpi_comm_opa)
[4152]	118	CALL iom_swap( cdname )
[8668]	119	llrst_context = (TRIM(cdname) == TRIM(crxios_context))
[1359]	120
[7646]	121	! Calendar type is now defined in xml file
[1725]	122	SELECT CASE ( nleapy ) ! Choose calendar for IOIPSL
[7646]	123	CASE ( 1) ; CALL xios_define_calendar( TYPE = "Gregorian", time_origin = xios_date(1900,01,01,00,00,00), &
	124	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
	125	CASE ( 0) ; CALL xios_define_calendar( TYPE = "NoLeap" , time_origin = xios_date(1900,01,01,00,00,00), &
	126	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
	127	CASE (30) ; CALL xios_define_calendar( TYPE = "D360" , time_origin = xios_date(1900,01,01,00,00,00), &
	128	& start_date = xios_date(nyear,nmonth,nday,0,0,0) )
[1725]	129	END SELECT
[1359]	130
	131	! horizontal grid definition
[8668]	132	IF(.NOT.llrst_context) CALL set_scalar
[1359]	133
[5407]	134	IF( TRIM(cdname) == TRIM(cxios_context) ) THEN
[8612]	135	CALL set_grid( "T", glamt, gphit, .FALSE. )
	136	CALL set_grid( "U", glamu, gphiu, .FALSE. )
	137	CALL set_grid( "V", glamv, gphiv, .FALSE. )
	138	CALL set_grid( "W", glamt, gphit, .FALSE. )
[5385]	139	CALL set_grid_znl( gphit )
[5415]	140	!
	141	IF( ln_cfmeta ) THEN ! Add additional grid metadata
[5836]	142	CALL iom_set_domain_attr("grid_T", area = e1e2t(nldi:nlei, nldj:nlej))
	143	CALL iom_set_domain_attr("grid_U", area = e1e2u(nldi:nlei, nldj:nlej))
	144	CALL iom_set_domain_attr("grid_V", area = e1e2v(nldi:nlei, nldj:nlej))
	145	CALL iom_set_domain_attr("grid_W", area = e1e2t(nldi:nlei, nldj:nlej))
[5415]	146	CALL set_grid_bounds( "T", glamf, gphif, glamt, gphit )
	147	CALL set_grid_bounds( "U", glamv, gphiv, glamu, gphiu )
	148	CALL set_grid_bounds( "V", glamu, gphiu, glamv, gphiv )
	149	CALL set_grid_bounds( "W", glamf, gphif, glamt, gphit )
	150	ENDIF
[4152]	151	ENDIF
	152
[5407]	153	IF( TRIM(cdname) == TRIM(cxios_context)//"_crs" ) THEN
[4152]	154	CALL dom_grid_crs ! Save the parent grid information & Switch to coarse grid domain
	155	!
[8612]	156	CALL set_grid( "T", glamt_crs, gphit_crs, .FALSE. )
	157	CALL set_grid( "U", glamu_crs, gphiu_crs, .FALSE. )
	158	CALL set_grid( "V", glamv_crs, gphiv_crs, .FALSE. )
	159	CALL set_grid( "W", glamt_crs, gphit_crs, .FALSE. )
[5385]	160	CALL set_grid_znl( gphit_crs )
[4152]	161	!
	162	CALL dom_grid_glo ! Return to parent grid domain
[5415]	163	!
[8668]	164	IF( ln_cfmeta .AND. TRIM(cdname) .NE. TRIM(crxios_context)) THEN ! Add additional grid metadata
[5415]	165	CALL iom_set_domain_attr("grid_T", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	166	CALL iom_set_domain_attr("grid_U", area = e1u_crs(nldi:nlei, nldj:nlej) * e2u_crs(nldi:nlei, nldj:nlej))
	167	CALL iom_set_domain_attr("grid_V", area = e1v_crs(nldi:nlei, nldj:nlej) * e2v_crs(nldi:nlei, nldj:nlej))
	168	CALL iom_set_domain_attr("grid_W", area = e1e2t_crs(nldi:nlei, nldj:nlej))
	169	CALL set_grid_bounds( "T", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	170	CALL set_grid_bounds( "U", glamv_crs, gphiv_crs, glamu_crs, gphiu_crs )
	171	CALL set_grid_bounds( "V", glamu_crs, gphiu_crs, glamv_crs, gphiv_crs )
	172	CALL set_grid_bounds( "W", glamf_crs, gphif_crs, glamt_crs, gphit_crs )
	173	ENDIF
[4152]	174	ENDIF
	175
[1359]	176	! vertical grid definition
[8668]	177	IF(.NOT.llrst_context) THEN
[8612]	178	CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
	179	CALL iom_set_axis_attr( "depthu", paxis = gdept_1d )
	180	CALL iom_set_axis_attr( "depthv", paxis = gdept_1d )
	181	CALL iom_set_axis_attr( "depthw", paxis = gdepw_1d )
[5415]	182
[8612]	183	! Add vertical grid bounds
	184	jkmin = MIN(2,jpk) ! in case jpk=1 (i.e. sas2D)
	185	zt_bnds(2,: ) = gdept_1d(:)
	186	zt_bnds(1,jkmin:jpk) = gdept_1d(1:jpkm1)
	187	zt_bnds(1,1 ) = gdept_1d(1) - e3w_1d(1)
	188	zw_bnds(1,: ) = gdepw_1d(:)
	189	zw_bnds(2,1:jpkm1 ) = gdepw_1d(jkmin:jpk)
	190	zw_bnds(2,jpk: ) = gdepw_1d(jpk) + e3t_1d(jpk)
	191	CALL iom_set_axis_attr( "deptht", bounds=zt_bnds )
	192	CALL iom_set_axis_attr( "depthu", bounds=zt_bnds )
	193	CALL iom_set_axis_attr( "depthv", bounds=zt_bnds )
	194	CALL iom_set_axis_attr( "depthw", bounds=zw_bnds )
[5415]	195
[7646]	196
[3294]	197	# if defined key_floats
[8612]	198	CALL iom_set_axis_attr( "nfloat", (/ (REAL(ji,wp), ji=1,nfloat) /) )
[3294]	199	# endif
[4691]	200	#if defined key_lim3 \|\| defined key_lim2
[8612]	201	CALL iom_set_axis_attr( "ncatice", (/ (REAL(ji,wp), ji=1,jpl) /) )
[4689]	202	#endif
[8612]	203	CALL iom_set_axis_attr( "icbcla", class_num )
	204	CALL iom_set_axis_attr( "iax_20C", (/ REAL(20,wp) /) )
	205	CALL iom_set_axis_attr( "iax_28C", (/ REAL(28,wp) /) )
	206	ENDIF
[1725]	207	! automatic definitions of some of the xml attributs
[8668]	208	IF( llrst_context ) THEN
[8612]	209	!set names of the fields in restart file IF using XIOS to read/write data
	210	CALL set_rst_context()
	211	CALL set_rst_vars()
	212	!set which fields are to be read from restart file
	213	CALL set_rstr_active()
	214	ELSE
	215	CALL set_xmlatt
	216	ENDIF
[1359]	217
	218	! end file definition
[4148]	219	dtime%second = rdt
	220	CALL xios_set_timestep(dtime)
	221	CALL xios_close_context_definition()
	222
	223	CALL xios_update_calendar(0)
[5415]	224
[7646]	225	DEALLOCATE( zt_bnds, zw_bnds )
[5415]	226
[1359]	227	#endif
[8612]	228
[1359]	229	END SUBROUTINE iom_init
	230
[8612]	231
	232	SUBROUTINE set_rst_vars()
	233	!set names for variables in restart file
	234	INTEGER :: i
	235	rst_fields(:)%vname="NO_NAME"; rst_fields(:)%grid="NO_GRID"
	236	i = 0
	237	i = i + 1; rst_fields(i)%vname="rdt"; rst_fields(i)% grid="grid_scalar"
	238	i = i + 1; rst_fields(i)%vname="un"; rst_fields(i)% grid="grid_N_3D"
	239	i = i + 1; rst_fields(i)%vname="ub"; rst_fields(i)% grid="grid_N_3D"
	240	i = i + 1; rst_fields(i)%vname="vn"; rst_fields(i)% grid="grid_N_3D"
	241	i = i + 1; rst_fields(i)%vname="vb"; rst_fields(i)% grid="grid_N_3D"
	242	i = i + 1; rst_fields(i)%vname="tn"; rst_fields(i)% grid="grid_N_3D"
	243	i = i + 1; rst_fields(i)%vname="tb"; rst_fields(i)% grid="grid_N_3D"
	244	i = i + 1; rst_fields(i)%vname="sn"; rst_fields(i)% grid="grid_N_3D"
	245	i = i + 1; rst_fields(i)%vname="sb"; rst_fields(i)%grid="grid_N_3D"
	246	i = i + 1; rst_fields(i)%vname="sshn"; rst_fields(i)%grid="grid_N"
	247	i = i + 1; rst_fields(i)%vname="sshb"; rst_fields(i)%grid="grid_N"
	248	i = i + 1; rst_fields(i)%vname="rhop"; rst_fields(i)%grid="grid_N_3D"
	249	i = i + 1; rst_fields(i)%vname="kt"; rst_fields(i)%grid="grid_scalar"
	250	i = i + 1; rst_fields(i)%vname="ndastp"; rst_fields(i)%grid="grid_scalar"
	251	i = i + 1; rst_fields(i)%vname="adatrj"; rst_fields(i)%grid="grid_scalar"
	252	i = i + 1; rst_fields(i)%vname="utau_b"; rst_fields(i)%grid="grid_N"
	253	i = i + 1; rst_fields(i)%vname="vtau_b"; rst_fields(i)%grid="grid_N"
	254	i = i + 1; rst_fields(i)%vname="qns_b"; rst_fields(i)%grid="grid_N"
	255	i = i + 1; rst_fields(i)%vname="emp_b"; rst_fields(i)%grid="grid_N"
	256	i = i + 1; rst_fields(i)%vname="sfx_b"; rst_fields(i)%grid="grid_N"
	257	i = i + 1; rst_fields(i)%vname="en" ; rst_fields(i)%grid="grid_N_3D"
	258	i = i + 1; rst_fields(i)%vname="avt"; rst_fields(i)%grid="grid_N_3D"
	259	i = i + 1; rst_fields(i)%vname="avm"; rst_fields(i)%grid="grid_N_3D"
	260	i = i + 1; rst_fields(i)%vname="avmu"; rst_fields(i)%grid="grid_N_3D"
	261	i = i + 1; rst_fields(i)%vname="avmv"; rst_fields(i)%grid="grid_N_3D"
	262	i = i + 1; rst_fields(i)%vname="dissl"; rst_fields(i)%grid="grid_N_3D"
	263	i = i + 1; rst_fields(i)%vname="sbc_hc_b"; rst_fields(i)%grid="grid_N"
	264	i = i + 1; rst_fields(i)%vname="sbc_sc_b"; rst_fields(i)%grid="grid_N"
	265	i = i + 1; rst_fields(i)%vname="qsr_hc_b"; rst_fields(i)%grid="grid_N_3D"
	266	i = i + 1; rst_fields(i)%vname="fraqsr_1lev"; rst_fields(i)%grid="grid_N"
	267	i = i + 1; rst_fields(i)%vname="greenland_icesheet_mass"
	268	rst_fields(i)%grid="grid_scalar"
	269	i = i + 1; rst_fields(i)%vname="greenland_icesheet_timelapsed"
	270	rst_fields(i)%grid="grid_scalar"
	271	i = i + 1; rst_fields(i)%vname="greenland_icesheet_mass_roc"
	272	rst_fields(i)%grid="grid_scalar"
	273	i = i + 1; rst_fields(i)%vname="antarctica_icesheet_mass"
	274	rst_fields(i)%grid="grid_scalar"
	275	i = i + 1; rst_fields(i)%vname="antarctica_icesheet_timelapsed"
	276	rst_fields(i)%grid="grid_scalar"
	277	i = i + 1; rst_fields(i)%vname="antarctica_icesheet_mass_roc"
	278	rst_fields(i)%grid="grid_scalar"
	279	i = i + 1; rst_fields(i)%vname="frc_v"; rst_fields(i)%grid="grid_scalar"
	280	i = i + 1; rst_fields(i)%vname="frc_t"; rst_fields(i)%grid="grid_scalar"
	281	i = i + 1; rst_fields(i)%vname="frc_s"; rst_fields(i)%grid="grid_scalar"
	282	i = i + 1; rst_fields(i)%vname="frc_wn_t"; rst_fields(i)%grid="grid_scalar"
	283	i = i + 1; rst_fields(i)%vname="frc_wn_s"; rst_fields(i)%grid="grid_scalar"
	284	i = i + 1; rst_fields(i)%vname="ssh_ini"; rst_fields(i)%grid="grid_N"
	285	i = i + 1; rst_fields(i)%vname="e3t_ini"; rst_fields(i)%grid="grid_N_3D"
	286	i = i + 1; rst_fields(i)%vname="hc_loc_ini"; rst_fields(i)%grid="grid_N_3D"
	287	i = i + 1; rst_fields(i)%vname="sc_loc_ini"; rst_fields(i)%grid="grid_N_3D"
	288	i = i + 1; rst_fields(i)%vname="ssh_hc_loc_ini"; rst_fields(i)%grid="grid_N"
	289	i = i + 1; rst_fields(i)%vname="ssh_sc_loc_ini"; rst_fields(i)%grid="grid_N"
	290	i = i + 1; rst_fields(i)%vname="tilde_e3t_b"; rst_fields(i)%grid="grid_N"
	291	i = i + 1; rst_fields(i)%vname="tilde_e3t_n"; rst_fields(i)%grid="grid_N"
	292	i = i + 1; rst_fields(i)%vname="hdiv_lf"; rst_fields(i)%grid="grid_N"
	293	i = i + 1; rst_fields(i)%vname="ub2_b"; rst_fields(i)%grid="grid_N"
	294	i = i + 1; rst_fields(i)%vname="vb2_b"; rst_fields(i)%grid="grid_N"
	295	i = i + 1; rst_fields(i)%vname="sshbb_e"; rst_fields(i)%grid="grid_N"
	296	i = i + 1; rst_fields(i)%vname="ubb_e"; rst_fields(i)%grid="grid_N"
	297	i = i + 1; rst_fields(i)%vname="vbb_e"; rst_fields(i)%grid="grid_N"
	298	i = i + 1; rst_fields(i)%vname="sshb_e"; rst_fields(i)%grid="grid_N"
	299	i = i + 1; rst_fields(i)%vname="ub_e"; rst_fields(i)%grid="grid_N"
	300	i = i + 1; rst_fields(i)%vname="vb_e"; rst_fields(i)%grid="grid_N"
	301	i = i + 1; rst_fields(i)%vname="fwf_isf_b"; rst_fields(i)%grid="grid_N"
	302	i = i + 1; rst_fields(i)%vname="isf_sc_b"; rst_fields(i)%grid="grid_N"
	303	i = i + 1; rst_fields(i)%vname="isf_hc_b"; rst_fields(i)%grid="grid_N"
	304	i = i + 1; rst_fields(i)%vname="ssh_ibb"; rst_fields(i)%grid="grid_N"
	305	i = i + 1; rst_fields(i)%vname="rnf_b"; rst_fields(i)%grid="grid_N"
	306	i = i + 1; rst_fields(i)%vname="rnf_hc_b"; rst_fields(i)%grid="grid_N"
	307	i = i + 1; rst_fields(i)%vname="rnf_sc_b"; rst_fields(i)%grid="grid_N"
	308	i = i + 1; rst_fields(i)%vname="nn_fsbc"; rst_fields(i)%grid="grid_scalar"
	309	i = i + 1; rst_fields(i)%vname="ssu_m"; rst_fields(i)%grid="grid_N"
	310	i = i + 1; rst_fields(i)%vname="ssv_m"; rst_fields(i)%grid="grid_N"
	311	i = i + 1; rst_fields(i)%vname="sst_m"; rst_fields(i)%grid="grid_N"
	312	i = i + 1; rst_fields(i)%vname="sss_m"; rst_fields(i)%grid="grid_N"
	313	i = i + 1; rst_fields(i)%vname="ssh_m"; rst_fields(i)%grid="grid_N"
	314	i = i + 1; rst_fields(i)%vname="e3t_m"; rst_fields(i)%grid="grid_N"
	315	i = i + 1; rst_fields(i)%vname="frq_m"; rst_fields(i)%grid="grid_N"
	316	i = i + 1; rst_fields(i)%vname="avmb"; rst_fields(i)%grid="grid_vector"
	317	i = i + 1; rst_fields(i)%vname="avtb"; rst_fields(i)%grid="grid_vector"
	318	i = i + 1; rst_fields(i)%vname="ub2_i_b"; rst_fields(i)%grid="grid_N"
	319	i = i + 1; rst_fields(i)%vname="vb2_i_b"; rst_fields(i)%grid="grid_N"
	320	i = i + 1; rst_fields(i)%vname="ntime"; rst_fields(i)%grid="grid_scalar"
	321	i = i + 1; rst_fields(i)%vname="Dsst"; rst_fields(i)%grid="grid_scalar"
	322	i = i + 1; rst_fields(i)%vname="tmask"; rst_fields(i)%grid="grid_N_3D"
	323	i = i + 1; rst_fields(i)%vname="umask"; rst_fields(i)%grid="grid_N_3D"
	324	i = i + 1; rst_fields(i)%vname="vmask"; rst_fields(i)%grid="grid_N_3D"
	325	i = i + 1; rst_fields(i)%vname="smask"; rst_fields(i)%grid="grid_N_3D"
	326	i = i + 1; rst_fields(i)%vname="gdepw_n"; rst_fields(i)%grid="grid_N_3D"
	327	i = i + 1; rst_fields(i)%vname="e3t_n"; rst_fields(i)%grid="grid_N_3D"
	328	i = i + 1; rst_fields(i)%vname="e3u_n"; rst_fields(i)%grid="grid_N_3D"
	329	i = i + 1; rst_fields(i)%vname="e3v_n"; rst_fields(i)%grid="grid_N_3D"
	330	i = i + 1; rst_fields(i)%vname="surf_ini"; rst_fields(i)%grid="grid_N"
	331	i = i + 1; rst_fields(i)%vname="e3t_b"; rst_fields(i)%grid="grid_N_3D"
	332	i = i + 1; rst_fields(i)%vname="e3t_n"; rst_fields(i)%grid="grid_N_3D"
	333	i = i + 1; rst_fields(i)%vname="mxln"; rst_fields(i)%grid="grid_N_3D"
	334	i = i + 1; rst_fields(i)%vname="e3t_m"; rst_fields(i)%grid="grid_N_3D"
	335	END SUBROUTINE set_rst_vars
[1359]	336
[8612]	337
	338	SUBROUTINE set_rstr_active()
	339	!sets enabled = .TRUE. for each field in restart file
	340	CHARACTER(len=256) :: rst_file
	341	TYPE(xios_field) :: field_hdl
	342	TYPE(xios_file) :: file_hdl
	343	TYPE(xios_filegroup) :: filegroup_hdl
	344	INTEGER :: i
	345	CHARACTER(lc) :: clpath
	346
	347	clpath = TRIM(cn_ocerst_indir)
	348	IF( clpath(LEN_TRIM(clpath):) /= '/' ) clpath = TRIM(clpath) // '/'
	349	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	350	rst_file = TRIM(clpath)//TRIM(cn_ocerst_in)
	351	ELSE
	352	rst_file = TRIM(clpath)//'1_'//TRIM(cn_ocerst_in)
	353	ENDIF
	354	!set name of the restart file and enable available fields
	355	if(lwp) WRITE(numout,*) 'Setting restart filename (for XIOS) to: ',rst_file
	356	CALL xios_get_handle("file_definition", filegroup_hdl )
	357	CALL xios_add_child(filegroup_hdl, file_hdl, 'rrestart')
	358	CALL xios_set_file_attr( "rrestart", name=trim(rst_file), type="one_file", &
	359	par_access="collective", enabled=.TRUE., mode="read", &
	360	output_freq=xios_timestep)
	361	!defin files for restart context
	362	DO i = 1, max_rst_fields
	363	IF( TRIM(rst_fields(i)%vname) /= "NO_NAME") THEN
	364	IF( iom_varid( numror, TRIM(rst_fields(i)%vname), ldstop = .FALSE. ) > 0 ) THEN
	365	CALL xios_add_child(file_hdl, field_hdl, TRIM(rst_fields(i)%vname))
	366	SELECT CASE (TRIM(rst_fields(i)%grid))
	367	CASE ("grid_N_3D")
	368	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_fields(i)%vname), &
	369	domain_ref="grid_N", axis_ref="deptht", operation = "instant")
	370	CASE ("grid_N")
	371	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_fields(i)%vname), &
	372	domain_ref="grid_N", operation = "instant")
	373	CASE ("grid_vector")
	374	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_fields(i)%vname), &
	375	axis_ref="deptht", operation = "instant")
	376	CASE ("grid_scalar")
	377	CALL xios_set_attr (field_hdl, enabled = .TRUE., name = TRIM(rst_fields(i)%vname), &
	378	scalar_ref = "grid_scalar", operation = "instant")
	379	END SELECT
	380	IF(lwp) WRITE(numout,*) 'XIOS read: ', TRIM(rst_fields(i)%vname), ' enabled in ', TRIM(rst_file)
	381	ENDIF
	382	ENDIF
	383	END DO
	384	END SUBROUTINE set_rstr_active
	385
	386	SUBROUTINE set_rst_context( )
	387	#if defined key_iomput
	388	TYPE(xios_domaingroup) :: domaingroup_hdl
	389	TYPE(xios_domain) :: domain_hdl
	390	TYPE(xios_axisgroup) :: axisgroup_hdl
	391	TYPE(xios_axis) :: axis_hdl
	392	TYPE(xios_scalar) :: scalar_hdl
	393	TYPE(xios_scalargroup) :: scalargroup_hdl
	394
	395	CALL xios_get_handle("domain_definition",domaingroup_hdl)
	396	CALL xios_add_child(domaingroup_hdl, domain_hdl, "grid_N")
	397	CALL set_grid("N", glamt, gphit, .TRUE.)
	398
	399	CALL xios_get_handle("axis_definition",axisgroup_hdl)
	400	CALL xios_add_child(axisgroup_hdl, axis_hdl, "deptht")
	401	!AGRIF fails to compile when unit= is in call to xios_set_axis_attr
	402	! CALL xios_set_axis_attr( "deptht", long_name="Vertical levels", unit="m", positive="down")
	403	CALL xios_set_axis_attr( "deptht", long_name="Vertical levels in meters", positive="down")
	404	CALL iom_set_axis_attr( "deptht", paxis = gdept_1d )
	405
	406	CALL xios_get_handle("scalar_definition", scalargroup_hdl)
	407	CALL xios_add_child(scalargroup_hdl, scalar_hdl, "grid_scalar")
	408	#endif
	409	END SUBROUTINE set_rst_context
	410
[4152]	411	SUBROUTINE iom_swap( cdname )
[1793]	412	!!---------------------------------------------------------------------
	413	!! * SUBROUTINE iom_swap *
	414	!!
	415	!! ** Purpose : swap context between different agrif grid for xmlio_server
	416	!!---------------------------------------------------------------------
[4152]	417	CHARACTER(len=*), INTENT(in) :: cdname
[1793]	418	#if defined key_iomput
[3695]	419	TYPE(xios_context) :: nemo_hdl
[1793]	420
[4152]	421	IF( TRIM(Agrif_CFixed()) == '0' ) THEN
	422	CALL xios_get_handle(TRIM(cdname),nemo_hdl)
	423	ELSE
	424	CALL xios_get_handle(TRIM(Agrif_CFixed())//"_"//TRIM(cdname),nemo_hdl)
	425	ENDIF
	426	!
	427	CALL xios_set_current_context(nemo_hdl)
[1793]	428	#endif
[4152]	429	!
[1793]	430	END SUBROUTINE iom_swap
	431
	432
[1319]	433	SUBROUTINE iom_open( cdname, kiomid, ldwrt, kdom, kiolib, ldstop, ldiof )
[544]	434	!!---------------------------------------------------------------------
	435	!! * SUBROUTINE iom_open *
	436	!!
	437	!! ** Purpose : open an input file (return 0 if not found)
	438	!!---------------------------------------------------------------------
	439	CHARACTER(len=*), INTENT(in ) :: cdname ! File name
	440	INTEGER , INTENT( out) :: kiomid ! iom identifier of the opened file
	441	LOGICAL , INTENT(in ), OPTIONAL :: ldwrt ! open in write modeb (default = .FALSE.)
	442	INTEGER , INTENT(in ), OPTIONAL :: kdom ! Type of domain to be written (default = jpdom_local_noovlap)
[547]	443	INTEGER , INTENT(in ), OPTIONAL :: kiolib ! library used to open the file (default = jpnf90)
[679]	444	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if open to read a non-existing file (default = .TRUE.)
[1319]	445	LOGICAL , INTENT(in ), OPTIONAL :: ldiof ! Interp On the Fly, needed for AGRIF (default = .FALSE.)
[544]	446
[4148]	447	CHARACTER(LEN=256) :: clname ! the name of the file based on cdname [[+clcpu]+clcpu]
	448	CHARACTER(LEN=256) :: cltmpn ! tempory name to store clname (in writting mode)
[6140]	449	CHARACTER(LEN=10) :: clsuffix ! ".nc"
[550]	450	CHARACTER(LEN=15) :: clcpu ! the cpu number (max jpmax_digits digits)
[4148]	451	CHARACTER(LEN=256) :: clinfo ! info character
[544]	452	LOGICAL :: llok ! check the existence
[679]	453	LOGICAL :: llwrt ! local definition of ldwrt
[1200]	454	LOGICAL :: llnoov ! local definition to read overlap
[679]	455	LOGICAL :: llstop ! local definition of ldstop
[1319]	456	LOGICAL :: lliof ! local definition of ldiof
[544]	457	INTEGER :: iolib ! library do we use to open the file
	458	INTEGER :: icnt ! counter for digits in clcpu (max = jpmax_digits)
	459	INTEGER :: iln, ils ! lengths of character
	460	INTEGER :: idom ! type of domain
	461	INTEGER :: istop !
	462	INTEGER, DIMENSION(2,5) :: idompar ! domain parameters:
	463	! local number of points for x,y dimensions
	464	! position of first local point for x,y dimensions
	465	! position of last local point for x,y dimensions
	466	! start halo size for x,y dimensions
	467	! end halo size for x,y dimensions
	468	!---------------------------------------------------------------------
	469	! Initializations and control
	470	! =============
[1341]	471	kiomid = -1
[544]	472	clinfo = ' iom_open ~~~ '
	473	istop = nstop
	474	! if iom_open is called for the first time: initialize iom_file(:)%nfid to 0
	475	! (could be done when defining iom_file in f95 but not in f90)
[1441]	476	IF( Agrif_Root() ) THEN
	477	IF( iom_open_init == 0 ) THEN
	478	iom_file(:)%nfid = 0
	479	iom_open_init = 1
	480	ENDIF
[1409]	481	ENDIF
[544]	482	! do we read or write the file?
	483	IF( PRESENT(ldwrt) ) THEN ; llwrt = ldwrt
	484	ELSE ; llwrt = .FALSE.
	485	ENDIF
[679]	486	! do we call ctl_stop if we try to open a non-existing file in read mode?
	487	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	488	ELSE ; llstop = .TRUE.
	489	ENDIF
[544]	490	! what library do we use to open the file?
	491	IF( PRESENT(kiolib) ) THEN ; iolib = kiolib
[547]	492	ELSE ; iolib = jpnf90
[544]	493	ENDIF
[1319]	494	! are we using interpolation on the fly?
	495	IF( PRESENT(ldiof) ) THEN ; lliof = ldiof
	496	ELSE ; lliof = .FALSE.
	497	ENDIF
[1200]	498	! do we read the overlap
	499	! ugly patch SM+JMM+RB to overwrite global definition in some cases
[1202]	500	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
[544]	501	! create the file name by added, if needed, TRIM(Agrif_CFixed()) and TRIM(clsuffix)
	502	! =============
	503	clname = trim(cdname)
[1319]	504	IF ( .NOT. Agrif_Root() .AND. .NOT. lliof ) THEN
[1200]	505	iln = INDEX(clname,'/')
	506	cltmpn = clname(1:iln)
	507	clname = clname(iln+1:LEN_TRIM(clname))
	508	clname=TRIM(cltmpn)//TRIM(Agrif_CFixed())//'_'//TRIM(clname)
	509	ENDIF
[544]	510	! which suffix should we use?
	511	SELECT CASE (iolib)
	512	CASE (jpnf90 ) ; clsuffix = '.nc'
	513	CASE DEFAULT ; clsuffix = ''
[6140]	514	CALL ctl_stop( TRIM(clinfo), 'accepted IO library is only jpnf90 (jpioipsl option has been removed) ' )
[544]	515	END SELECT
	516	! Add the suffix if needed
	517	iln = LEN_TRIM(clname)
	518	ils = LEN_TRIM(clsuffix)
[742]	519	IF( iln <= ils .OR. INDEX( TRIM(clname), TRIM(clsuffix), back = .TRUE. ) /= iln - ils + 1 ) &
	520	& clname = TRIM(clname)//TRIM(clsuffix)
[544]	521	cltmpn = clname ! store this name
	522	! try to find if the file to be opened already exist
	523	! =============
	524	INQUIRE( FILE = clname, EXIST = llok )
	525	IF( .NOT.llok ) THEN
	526	! we try to add the cpu number to the name
[6140]	527	WRITE(clcpu,*) narea-1
	528
[544]	529	clcpu = TRIM(ADJUSTL(clcpu))
[679]	530	iln = INDEX(clname,TRIM(clsuffix), back = .TRUE.)
[544]	531	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	532	icnt = 0
	533	INQUIRE( FILE = clname, EXIST = llok )
	534	! we try different formats for the cpu number by adding 0
	535	DO WHILE( .NOT.llok .AND. icnt < jpmax_digits )
	536	clcpu = "0"//trim(clcpu)
	537	clname = clname(1:iln-1)//'_'//TRIM(clcpu)//TRIM(clsuffix)
	538	INQUIRE( FILE = clname, EXIST = llok )
	539	icnt = icnt + 1
	540	END DO
[8612]	541	ELSE
	542	lxios_sini = .TRUE.
[544]	543	ENDIF
[679]	544	IF( llwrt ) THEN
	545	! check the domain definition
	546	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	547	! idom = jpdom_local_noovlap ! default definition
[1200]	548	IF( llnoov ) THEN ; idom = jpdom_local_noovlap ! default definition
	549	ELSE ; idom = jpdom_local_full ! default definition
[679]	550	ENDIF
	551	IF( PRESENT(kdom) ) idom = kdom
	552	! create the domain informations
	553	! =============
	554	SELECT CASE (idom)
	555	CASE (jpdom_local_full)
	556	idompar(:,1) = (/ jpi , jpj /)
	557	idompar(:,2) = (/ nimpp , njmpp /)
	558	idompar(:,3) = (/ nimpp + jpi - 1 , njmpp + jpj - 1 /)
	559	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	560	idompar(:,5) = (/ jpi - nlei , jpj - nlej /)
	561	CASE (jpdom_local_noextra)
	562	idompar(:,1) = (/ nlci , nlcj /)
	563	idompar(:,2) = (/ nimpp , njmpp /)
	564	idompar(:,3) = (/ nimpp + nlci - 1, njmpp + nlcj - 1 /)
	565	idompar(:,4) = (/ nldi - 1 , nldj - 1 /)
	566	idompar(:,5) = (/ nlci - nlei , nlcj - nlej /)
	567	CASE (jpdom_local_noovlap)
	568	idompar(:,1) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	569	idompar(:,2) = (/ nimpp + nldi - 1, njmpp + nldj - 1 /)
	570	idompar(:,3) = (/ nimpp + nlei - 1, njmpp + nlej - 1 /)
	571	idompar(:,4) = (/ 0 , 0 /)
	572	idompar(:,5) = (/ 0 , 0 /)
	573	CASE DEFAULT
	574	CALL ctl_stop( TRIM(clinfo), 'wrong value of kdom, only jpdom_local* cases are accepted' )
	575	END SELECT
	576	ENDIF
[6140]	577	! Open the NetCDF file
[544]	578	! =============
	579	! do we have some free file identifier?
	580	IF( MINVAL(iom_file(:)%nfid) /= 0 ) &
[679]	581	& CALL ctl_stop( TRIM(clinfo), 'No more free file identifier', 'increase jpmax_files in iom_def' )
	582	! if no file was found...
	583	IF( .NOT. llok ) THEN
	584	IF( .NOT. llwrt ) THEN ! we are in read mode
	585	IF( llstop ) THEN ; CALL ctl_stop( TRIM(clinfo), 'File '//TRIM(cltmpn)//'* not found' )
	586	ELSE ; istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
	587	ENDIF
	588	ELSE ! we are in write mode so we
	589	clname = cltmpn ! get back the file name without the cpu number
	590	ENDIF
[2586]	591	ELSE
	592	IF( llwrt .AND. .NOT. ln_clobber ) THEN ! we stop as we want to write in a new file
	593	CALL ctl_stop( TRIM(clinfo), 'We want to write in a new file but '//TRIM(clname)//' already exists...' )
	594	istop = nstop + 1 ! make sure that istop /= nstop so we don't open the file
[4650]	595	ELSEIF( llwrt ) THEN ! the file exists and we are in write mode with permission to
	596	clname = cltmpn ! overwrite so get back the file name without the cpu number
[2586]	597	ENDIF
[679]	598	ENDIF
[544]	599	IF( istop == nstop ) THEN ! no error within this routine
	600	SELECT CASE (iolib)
	601	CASE (jpnf90 ) ; CALL iom_nf90_open( clname, kiomid, llwrt, llok, idompar )
	602	CASE DEFAULT
[6140]	603	CALL ctl_stop( TRIM(clinfo)//' accepted IO library is only jpnf90 (jpioipsl option has been removed) ' )
[544]	604	END SELECT
	605	ENDIF
	606	!
	607	END SUBROUTINE iom_open
	608
	609
	610	SUBROUTINE iom_close( kiomid )
	611	!!--------------------------------------------------------------------
	612	!! * SUBROUTINE iom_close *
	613	!!
	614	!! ** Purpose : close an input file, or all files opened by iom
	615	!!--------------------------------------------------------------------
[1131]	616	INTEGER, INTENT(inout), OPTIONAL :: kiomid ! iom identifier of the file to be closed
	617	! ! return 0 when file is properly closed
	618	! ! No argument: all files opened by iom are closed
[544]	619
	620	INTEGER :: jf ! dummy loop indices
	621	INTEGER :: i_s, i_e ! temporary integer
	622	CHARACTER(LEN=100) :: clinfo ! info character
	623	!---------------------------------------------------------------------
	624	!
	625	clinfo = ' iom_close ~~~ '
	626	IF( PRESENT(kiomid) ) THEN
	627	i_s = kiomid
	628	i_e = kiomid
	629	ELSE
	630	i_s = 1
	631	i_e = jpmax_files
	632	ENDIF
	633
	634	IF( i_s > 0 ) THEN
	635	DO jf = i_s, i_e
	636	IF( iom_file(jf)%nfid > 0 ) THEN
	637	SELECT CASE (iom_file(jf)%iolib)
	638	CASE (jpnf90 ) ; CALL iom_nf90_close( jf )
	639	CASE DEFAULT
[6140]	640	CALL ctl_stop( TRIM(clinfo)//' accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[544]	641	END SELECT
[1131]	642	iom_file(jf)%nfid = 0 ! free the id
	643	IF( PRESENT(kiomid) ) kiomid = 0 ! return 0 as id to specify that the file was closed
[679]	644	IF(lwp) WRITE(numout,*) TRIM(clinfo)//' close file: '//TRIM(iom_file(jf)%name)//' ok'
[544]	645	ELSEIF( PRESENT(kiomid) ) THEN
	646	WRITE(ctmp1,*) '--->', kiomid
	647	CALL ctl_stop( TRIM(clinfo)//' Invalid file identifier', ctmp1 )
	648	ENDIF
	649	END DO
	650	ENDIF
	651	!
	652	END SUBROUTINE iom_close
	653
	654
[4205]	655	FUNCTION iom_varid ( kiomid, cdvar, kdimsz, kndims, ldstop )
[544]	656	!!-----------------------------------------------------------------------
	657	!! * FUNCTION iom_varid *
	658	!!
	659	!! ** Purpose : get the id of a variable in a file (return 0 if not found)
	660	!!-----------------------------------------------------------------------
	661	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	662	CHARACTER(len=*) , INTENT(in ) :: cdvar ! name of the variable
	663	INTEGER, DIMENSION(:), INTENT( out), OPTIONAL :: kdimsz ! size of the dimensions
[4205]	664	INTEGER, INTENT( out), OPTIONAL :: kndims ! size of the dimensions
[745]	665	LOGICAL , INTENT(in ), OPTIONAL :: ldstop ! stop if looking for non-existing variable (default = .TRUE.)
[544]	666	!
	667	INTEGER :: iom_varid, iiv, i_nvd
	668	LOGICAL :: ll_fnd
	669	CHARACTER(LEN=100) :: clinfo ! info character
[745]	670	LOGICAL :: llstop ! local definition of ldstop
[544]	671	!!-----------------------------------------------------------------------
	672	iom_varid = 0 ! default definition
[745]	673	! do we call ctl_stop if we look for non-existing variable?
	674	IF( PRESENT(ldstop) ) THEN ; llstop = ldstop
	675	ELSE ; llstop = .TRUE.
	676	ENDIF
[544]	677	!
	678	IF( kiomid > 0 ) THEN
[679]	679	clinfo = 'iom_varid, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(cdvar)
[544]	680	IF( iom_file(kiomid)%nfid == 0 ) THEN
	681	CALL ctl_stop( trim(clinfo), 'the file is not open' )
	682	ELSE
	683	ll_fnd = .FALSE.
	684	iiv = 0
	685	!
	686	DO WHILE ( .NOT.ll_fnd .AND. iiv < iom_file(kiomid)%nvars )
	687	iiv = iiv + 1
	688	ll_fnd = ( TRIM(cdvar) == TRIM(iom_file(kiomid)%cn_var(iiv)) )
	689	END DO
	690	!
	691	IF( .NOT.ll_fnd ) THEN
	692	iiv = iiv + 1
	693	IF( iiv <= jpmax_vars ) THEN
	694	SELECT CASE (iom_file(kiomid)%iolib)
[4205]	695	CASE (jpnf90 ) ; iom_varid = iom_nf90_varid ( kiomid, cdvar, iiv, kdimsz, kndims )
[6140]	696	CASE DEFAULT
	697	CALL ctl_stop( TRIM(clinfo)//' accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[544]	698	END SELECT
	699	ELSE
	700	CALL ctl_stop( trim(clinfo), 'Too many variables in the file '//iom_file(kiomid)%name, &
	701	& 'increase the parameter jpmax_vars')
	702	ENDIF
[745]	703	IF( llstop .AND. iom_varid == -1 ) CALL ctl_stop( TRIM(clinfo)//' not found' )
[544]	704	ELSE
	705	iom_varid = iiv
	706	IF( PRESENT(kdimsz) ) THEN
	707	i_nvd = iom_file(kiomid)%ndims(iiv)
	708	IF( i_nvd == size(kdimsz) ) THEN
	709	kdimsz(:) = iom_file(kiomid)%dimsz(1:i_nvd,iiv)
	710	ELSE
	711	WRITE(ctmp1,*) i_nvd, size(kdimsz)
	712	CALL ctl_stop( trim(clinfo), 'error in kdimsz size'//trim(ctmp1) )
	713	ENDIF
	714	ENDIF
[4205]	715	IF( PRESENT(kndims) ) kndims = iom_file(kiomid)%ndims(iiv)
[544]	716	ENDIF
	717	ENDIF
	718	ENDIF
	719	!
	720	END FUNCTION iom_varid
	721
	722
	723	!!----------------------------------------------------------------------
	724	!! INTERFACE iom_get
	725	!!----------------------------------------------------------------------
[8668]	726	SUBROUTINE iom_g0d( kiomid, cdvar, pvar, ktime, ldxios )
[544]	727	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	728	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	729	REAL(wp) , INTENT( out) :: pvar ! read field
[4245]	730	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
[8668]	731	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use xios to read restart
[544]	732	!
[4245]	733	INTEGER :: idvar ! variable id
	734	INTEGER :: idmspc ! number of spatial dimensions
	735	INTEGER , DIMENSION(1) :: itime ! record number
	736	CHARACTER(LEN=100) :: clinfo ! info character
	737	CHARACTER(LEN=100) :: clname ! file name
	738	CHARACTER(LEN=1) :: cldmspc !
[8668]	739	LOGICAL :: llxios
[544]	740	!
[8668]	741	llxios = .FALSE.
	742	IF( PRESENT(ldxios) ) llxios = ldxios
[8616]	743
[8668]	744	IF(.NOT.llxios) THEN ! read data using default library
[8616]	745	itime = 1
	746	IF( PRESENT(ktime) ) itime = ktime
	747	!
	748	clname = iom_file(kiomid)%name
	749	clinfo = ' iom_g0d, file: '//trim(clname)//', var: '//trim(cdvar)
	750	!
	751	IF( kiomid > 0 ) THEN
	752	idvar = iom_varid( kiomid, cdvar )
	753	IF( iom_file(kiomid)%nfid > 0 .AND. idvar > 0 ) THEN
	754	idmspc = iom_file ( kiomid )%ndims( idvar )
	755	IF( iom_file(kiomid)%luld(idvar) ) idmspc = idmspc - 1
	756	WRITE(cldmspc , fmt='(i1)') idmspc
	757	IF( idmspc > 0 ) CALL ctl_stop( TRIM(clinfo), 'When reading to a 0D array, we do not accept data', &
	758	& 'with 1 or more spatial dimensions: '//cldmspc//' were found.' , &
	759	& 'Use ncwa -a to suppress the unnecessary dimensions' )
	760	SELECT CASE (iom_file(kiomid)%iolib)
	761	CASE (jpnf90 ) ; CALL iom_nf90_get( kiomid, idvar, pvar, itime )
	762	CASE DEFAULT
	763	CALL ctl_stop( 'iom_g0d: accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
	764	END SELECT
	765	ENDIF
[679]	766	ENDIF
[8616]	767	ELSE
	768	IF(lwp) WRITE(numout,*) 'XIOS RST READ (0D): ', trim(cdvar)
[8668]	769	CALL iom_swap( TRIM(crxios_context) )
[8616]	770	CALL xios_recv_field( trim(cdvar), pvar)
	771	CALL iom_swap( TRIM(cxios_context) )
[679]	772	ENDIF
[550]	773	END SUBROUTINE iom_g0d
[544]	774
[8668]	775	SUBROUTINE iom_g1d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, ldxios )
[544]	776	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	777	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	778	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	779	REAL(wp) , INTENT( out), DIMENSION(:) :: pvar ! read field
	780	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	781	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kstart ! start axis position of the reading
	782	INTEGER , INTENT(in ), DIMENSION(1), OPTIONAL :: kcount ! number of points in each axis
[8668]	783	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	784	!
[679]	785	IF( kiomid > 0 ) THEN
	786	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r1d=pvar, &
[8612]	787	& ktime=ktime, kstart=kstart, kcount=kcount, &
[8668]	788	& ldxios=ldxios )
[679]	789	ENDIF
[550]	790	END SUBROUTINE iom_g1d
[544]	791
[8668]	792	SUBROUTINE iom_g2d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios)
[544]	793	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	794	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	795	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	796	REAL(wp) , INTENT( out), DIMENSION(:,:) :: pvar ! read field
	797	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	798	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kstart ! start axis position of the reading
	799	INTEGER , INTENT(in ), DIMENSION(2) , OPTIONAL :: kcount ! number of points in each axis
[5118]	800	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	801	! look for and use a file attribute
	802	! called open_ocean_jstart to set the start
	803	! value for the 2nd dimension (netcdf only)
[8668]	804	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	805	!
[679]	806	IF( kiomid > 0 ) THEN
	807	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r2d=pvar, &
[5118]	808	& ktime=ktime, kstart=kstart, kcount=kcount, &
[8668]	809	& lrowattr=lrowattr, ldxios=ldxios)
[679]	810	ENDIF
[550]	811	END SUBROUTINE iom_g2d
[544]	812
[8668]	813	SUBROUTINE iom_g3d( kiomid, kdom, cdvar, pvar, ktime, kstart, kcount, lrowattr, ldxios )
[544]	814	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	815	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	816	CHARACTER(len=*), INTENT(in ) :: cdvar ! Name of the variable
	817	REAL(wp) , INTENT( out), DIMENSION(:,:,:) :: pvar ! read field
	818	INTEGER , INTENT(in ) , OPTIONAL :: ktime ! record number
	819	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kstart ! start axis position of the reading
	820	INTEGER , INTENT(in ), DIMENSION(3) , OPTIONAL :: kcount ! number of points in each axis
[5118]	821	LOGICAL , INTENT(in ) , OPTIONAL :: lrowattr ! logical flag telling iom_get to
	822	! look for and use a file attribute
	823	! called open_ocean_jstart to set the start
	824	! value for the 2nd dimension (netcdf only)
[8668]	825	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! read data using XIOS
[544]	826	!
[679]	827	IF( kiomid > 0 ) THEN
	828	IF( iom_file(kiomid)%nfid > 0 ) CALL iom_get_123d( kiomid, kdom , cdvar , pv_r3d=pvar, &
[5118]	829	& ktime=ktime, kstart=kstart, kcount=kcount, &
[8668]	830	& lrowattr=lrowattr, ldxios=ldxios )
[679]	831	ENDIF
[550]	832	END SUBROUTINE iom_g3d
[544]	833	!!----------------------------------------------------------------------
	834
	835	SUBROUTINE iom_get_123d( kiomid, kdom , cdvar , &
[679]	836	& pv_r1d, pv_r2d, pv_r3d, &
[5118]	837	& ktime , kstart, kcount, &
[8668]	838	& lrowattr, ldxios )
[544]	839	!!-----------------------------------------------------------------------
	840	!! * ROUTINE iom_get_123d *
	841	!!
	842	!! ** Purpose : read a 1D/2D/3D variable
	843	!!
	844	!! ** Method : read ONE record at each CALL
	845	!!-----------------------------------------------------------------------
	846	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	847	INTEGER , INTENT(in ) :: kdom ! Type of domain to be read
	848	CHARACTER(len=*) , INTENT(in ) :: cdvar ! Name of the variable
	849	REAL(wp), DIMENSION(:) , INTENT( out), OPTIONAL :: pv_r1d ! read field (1D case)
	850	REAL(wp), DIMENSION(:,:) , INTENT( out), OPTIONAL :: pv_r2d ! read field (2D case)
	851	REAL(wp), DIMENSION(:,:,:) , INTENT( out), OPTIONAL :: pv_r3d ! read field (3D case)
	852	INTEGER , INTENT(in ), OPTIONAL :: ktime ! record number
	853	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kstart ! start position of the reading in each axis
	854	INTEGER , DIMENSION(:) , INTENT(in ), OPTIONAL :: kcount ! number of points to be read in each axis
[5118]	855	LOGICAL , INTENT(in ), OPTIONAL :: lrowattr ! logical flag telling iom_get to
	856	! look for and use a file attribute
	857	! called open_ocean_jstart to set the start
	858	! value for the 2nd dimension (netcdf only)
[8668]	859	LOGICAL , INTENT(in ), OPTIONAL :: ldxios ! use XIOS to read restart
[544]	860	!
[8668]	861	LOGICAL :: llxios ! local definition for XIOS read
[1200]	862	LOGICAL :: llnoov ! local definition to read overlap
[5118]	863	LOGICAL :: luse_jattr ! local definition to read open_ocean_jstart file attribute
	864	INTEGER :: jstartrow ! start point for 2nd dimension optionally set by file attribute
[544]	865	INTEGER :: jl ! loop on number of dimension
	866	INTEGER :: idom ! type of domain
	867	INTEGER :: idvar ! id of the variable
	868	INTEGER :: inbdim ! number of dimensions of the variable
	869	INTEGER :: idmspc ! number of spatial dimensions
	870	INTEGER :: itime ! record number
	871	INTEGER :: istop ! temporary value of nstop
[679]	872	INTEGER :: ix1, ix2, iy1, iy2 ! subdomain indexes
	873	INTEGER :: ji, jj ! loop counters
[5118]	874	INTEGER :: irankpv !
[679]	875	INTEGER :: ind1, ind2 ! substring index
[544]	876	INTEGER, DIMENSION(jpmax_dims) :: istart ! starting point to read for each axis
	877	INTEGER, DIMENSION(jpmax_dims) :: icnt ! number of value to read along each axis
	878	INTEGER, DIMENSION(jpmax_dims) :: idimsz ! size of the dimensions of the variable
[679]	879	INTEGER, DIMENSION(jpmax_dims) :: ishape ! size of the dimensions of the variable
[544]	880	REAL(wp) :: zscf, zofs ! sacle_factor and add_offset
	881	INTEGER :: itmp ! temporary integer
[4148]	882	CHARACTER(LEN=256) :: clinfo ! info character
	883	CHARACTER(LEN=256) :: clname ! file name
[679]	884	CHARACTER(LEN=1) :: clrankpv, cldmspc !
[6140]	885	LOGICAL :: ll_depth_spec ! T => if kstart, kcount present then only use values for 3rd spatial dimension.
[544]	886	!---------------------------------------------------------------------
	887	!
[8612]	888	REAL(wp) :: gma, gmi
[8668]	889	llxios = .FALSE.
	890	if(PRESENT(ldxios)) llxios = ldxios
[8612]	891	idvar = iom_varid( kiomid, cdvar )
[544]	892	idom = kdom
[8612]	893
[8668]	894	IF(.NOT.llxios) THEN
[8612]	895	clname = iom_file(kiomid)%name ! esier to read
	896	clinfo = ' iom_get_123d, file: '//trim(clname)//', var: '//trim(cdvar)
	897	! local definition of the domain ?
	898	! do we read the overlap
	899	! ugly patch SM+JMM+RB to overwrite global definition in some cases
	900	llnoov = (jpni * jpnj ) == jpnij .AND. .NOT. lk_agrif
	901	! check kcount and kstart optionals parameters...
	902	IF( PRESENT(kcount) .AND. (.NOT. PRESENT(kstart)) ) CALL ctl_stop(trim(clinfo), 'kcount present needs kstart present')
	903	IF( PRESENT(kstart) .AND. (.NOT. PRESENT(kcount)) ) CALL ctl_stop(trim(clinfo), 'kstart present needs kcount present')
	904	IF( PRESENT(kstart) .AND. idom /= jpdom_unknown .AND. idom /= jpdom_autoglo_xy ) &
[6140]	905	& CALL ctl_stop(trim(clinfo), 'kstart present needs kdom = jpdom_unknown or kdom = jpdom_autoglo_xy')
[544]	906
[5118]	907	luse_jattr = .false.
	908	IF( PRESENT(lrowattr) ) THEN
	909	IF( lrowattr .AND. idom /= jpdom_data ) CALL ctl_stop(trim(clinfo), 'lrowattr present and true needs kdom = jpdom_data')
	910	IF( lrowattr .AND. idom == jpdom_data ) luse_jattr = .true.
	911	ENDIF
	912	IF( luse_jattr ) THEN
	913	SELECT CASE (iom_file(kiomid)%iolib)
	914	CASE (jpnf90 )
	915	! Ok
	916	CASE DEFAULT
[6140]	917	CALL ctl_stop( TRIM(clinfo)//' accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[5118]	918	END SELECT
	919	ENDIF
	920
[8612]	921	! Search for the variable in the data base (eventually actualize data)
	922	istop = nstop
	923	!
	924	IF( idvar > 0 ) THEN
	925	! to write iom_file(kiomid)%dimsz in a shorter way !
	926	idimsz(:) = iom_file(kiomid)%dimsz(:, idvar)
	927	inbdim = iom_file(kiomid)%ndims(idvar) ! number of dimensions in the file
	928	idmspc = inbdim ! number of spatial dimensions in the file
	929	IF( iom_file(kiomid)%luld(idvar) ) idmspc = inbdim - 1
	930	IF( idmspc > 3 ) CALL ctl_stop(trim(clinfo), 'the file has more than 3 spatial dimensions this case is not coded...')
	931	!
	932	! update idom definition...
	933	! Identify the domain in case of jpdom_auto(glo/dta) definition
	934	IF( idom == jpdom_autoglo_xy ) THEN
	935	ll_depth_spec = .TRUE.
	936	idom = jpdom_autoglo
	937	ELSE
	938	ll_depth_spec = .FALSE.
	939	ENDIF
	940	IF( idom == jpdom_autoglo .OR. idom == jpdom_autodta ) THEN
	941	IF( idom == jpdom_autoglo ) THEN ; idom = jpdom_global
	942	ELSE ; idom = jpdom_data
	943	ENDIF
	944	ind1 = INDEX( clname, '_', back = .TRUE. ) + 1
	945	ind2 = INDEX( clname, '.', back = .TRUE. ) - 1
	946	IF( ind2 > ind1 ) THEN ; IF( VERIFY( clname(ind1:ind2), '0123456789' ) == 0 ) idom = jpdom_local ; ENDIF
	947	ENDIF
	948	! Identify the domain in case of jpdom_local definition
	949	IF( idom == jpdom_local ) THEN
	950	IF( idimsz(1) == jpi .AND. idimsz(2) == jpj ) THEN ; idom = jpdom_local_full
	951	ELSEIF( idimsz(1) == nlci .AND. idimsz(2) == nlcj ) THEN ; idom = jpdom_local_noextra
	952	ELSEIF( idimsz(1) == (nlei - nldi + 1) .AND. idimsz(2) == (nlej - nldj + 1) ) THEN ; idom = jpdom_local_noovlap
	953	ELSE ; CALL ctl_stop( trim(clinfo), 'impossible to identify the local domain' )
	954	ENDIF
	955	ENDIF
	956	!
	957	! check the consistency between input array and data rank in the file
	958	!
	959	! initializations
	960	itime = 1
	961	IF( PRESENT(ktime) ) itime = ktime
[679]	962
[8612]	963	irankpv = 1 * COUNT( (/PRESENT(pv_r1d)/) ) + 2 * COUNT( (/PRESENT(pv_r2d)/) ) + 3 * COUNT( (/PRESENT(pv_r3d)/) )
	964	WRITE(clrankpv, fmt='(i1)') irankpv
	965	WRITE(cldmspc , fmt='(i1)') idmspc
	966	!
	967	IF( idmspc < irankpv ) THEN
	968	CALL ctl_stop( TRIM(clinfo), 'The file has only '//cldmspc//' spatial dimension', &
[679]	969	& 'it is impossible to read a '//clrankpv//'D array from this file...' )
[8612]	970	ELSEIF( idmspc == irankpv ) THEN
	971	IF( PRESENT(pv_r1d) .AND. idom /= jpdom_unknown ) &
[679]	972	& CALL ctl_stop( TRIM(clinfo), 'case not coded...You must use jpdom_unknown' )
[8612]	973	ELSEIF( idmspc > irankpv ) THEN
	974	IF( PRESENT(pv_r2d) .AND. itime == 1 .AND. idimsz(3) == 1 .AND. idmspc == 3 ) THEN
	975	CALL ctl_warn( trim(clinfo), '2D array but 3 spatial dimensions for the data...' , &
[679]	976	& 'As the size of the z dimension is 1 and as we try to read the first record, ', &
	977	& 'we accept this case, even if there is a possible mix-up between z and time dimension' )
[8612]	978	idmspc = idmspc - 1
	979	ELSE
	980	CALL ctl_stop( TRIM(clinfo), 'To keep iom lisibility, when reading a '//clrankpv//'D array,' , &
[4245]	981	& 'we do not accept data with '//cldmspc//' spatial dimensions', &
[679]	982	& 'Use ncwa -a to suppress the unnecessary dimensions' )
[8612]	983	ENDIF
	984	ENDIF
[679]	985
[8612]	986	!
	987	! definition of istart and icnt
	988	!
	989	icnt (:) = 1
	990	istart(:) = 1
	991	istart(idmspc+1) = itime
[679]	992
[8329]	993	IF( PRESENT(kstart) .AND. .NOT. ll_depth_spec ) THEN
	994	istart(1:idmspc) = kstart(1:idmspc) ; icnt(1:idmspc) = kcount(1:idmspc)
[679]	995	ELSE
[8329]	996	IF(idom == jpdom_unknown ) THEN
	997	icnt(1:idmspc) = idimsz(1:idmspc)
[679]	998	ELSE
	999	IF( .NOT. PRESENT(pv_r1d) ) THEN ! not a 1D array
[5118]	1000	IF( idom == jpdom_data ) THEN
	1001	jstartrow = 1
	1002	IF( luse_jattr ) THEN
	1003	CALL iom_getatt(kiomid, 'open_ocean_jstart', jstartrow ) ! -999 is returned if the attribute is not found
	1004	jstartrow = MAX(1,jstartrow)
	1005	ENDIF
	1006	istart(1:2) = (/ mig(1), mjg(1) + jstartrow - 1 /) ! icnt(1:2) done below
	1007	ELSEIF( idom == jpdom_global ) THEN ; istart(1:2) = (/ nimpp , njmpp /) ! icnt(1:2) done below
[544]	1008	ENDIF
[679]	1009	! we do not read the overlap -> we start to read at nldi, nldj
	1010	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1011	! IF( idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[8612]	1012	IF( llnoov .AND. idom /= jpdom_local_noovlap ) istart(1:2) = istart(1:2) + (/ nldi - 1, nldj - 1 /)
[679]	1013	! we do not read the overlap and the extra-halos -> from nldi to nlei and from nldj to nlej
	1014	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1015	! icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
[1200]	1016	IF( llnoov ) THEN ; icnt(1:2) = (/ nlei - nldi + 1, nlej - nldj + 1 /)
	1017	ELSE ; icnt(1:2) = (/ nlci , nlcj /)
[544]	1018	ENDIF
[679]	1019	IF( PRESENT(pv_r3d) ) THEN
[7646]	1020	IF( idom == jpdom_data ) THEN ; icnt(3) = jpkglo
[6140]	1021	ELSE IF( ll_depth_spec .AND. PRESENT(kstart) ) THEN ; istart(3) = kstart(3); icnt(3) = kcount(3)
	1022	ELSE ; icnt(3) = jpk
[544]	1023	ENDIF
	1024	ENDIF
	1025	ENDIF
[679]	1026	ENDIF
[544]	1027	ENDIF
	1028
[8612]	1029	! check that istart and icnt can be used with this file
	1030	!-
	1031	DO jl = 1, jpmax_dims
	1032	itmp = istart(jl)+icnt(jl)-1
	1033	IF( itmp > idimsz(jl) .AND. idimsz(jl) /= 0 ) THEN
	1034	WRITE( ctmp1, FMT="('(istart(', i1, ') + icnt(', i1, ') - 1) = ', i5)" ) jl, jl, itmp
	1035	WRITE( ctmp2, FMT="(' is larger than idimsz(', i1,') = ', i5)" ) jl, idimsz(jl)
	1036	CALL ctl_stop( trim(clinfo), 'start and count too big regarding to the size of the data, ', ctmp1, ctmp2 )
	1037	ENDIF
	1038	END DO
[544]	1039
[8612]	1040	! check that icnt matches the input array
	1041	!-
	1042	IF( idom == jpdom_unknown ) THEN
	1043	IF( irankpv == 1 ) ishape(1:1) = SHAPE(pv_r1d)
	1044	IF( irankpv == 2 ) ishape(1:2) = SHAPE(pv_r2d)
	1045	IF( irankpv == 3 ) ishape(1:3) = SHAPE(pv_r3d)
	1046	ctmp1 = 'd'
	1047	ELSE
	1048	IF( irankpv == 2 ) THEN
[679]	1049	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1050	! ishape(1:2) = SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1 = 'd(nldi:nlei,nldj:nlej)'
[8612]	1051	IF( llnoov ) THEN ; ishape(1:2)=SHAPE(pv_r2d(nldi:nlei,nldj:nlej )) ; ctmp1='d(nldi:nlei,nldj:nlej)'
	1052	ELSE ; ishape(1:2)=SHAPE(pv_r2d(1 :nlci,1 :nlcj )) ; ctmp1='d(1:nlci,1:nlcj)'
	1053	ENDIF
	1054	ENDIF
	1055	IF( irankpv == 3 ) THEN
[679]	1056	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1057	! ishape(1:3) = SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1 = 'd(nldi:nlei,nldj:nlej,:)'
[8612]	1058	IF( llnoov ) THEN ; ishape(1:3)=SHAPE(pv_r3d(nldi:nlei,nldj:nlej,:)) ; ctmp1='d(nldi:nlei,nldj:nlej,:)'
	1059	ELSE ; ishape(1:3)=SHAPE(pv_r3d(1 :nlci,1 :nlcj,:)) ; ctmp1='d(1:nlci,1:nlcj,:)'
	1060	ENDIF
	1061	ENDIF
	1062	ENDIF
[679]	1063
[8612]	1064	DO jl = 1, irankpv
	1065	WRITE( ctmp2, FMT="(', ', i1,'): ', i5,' /= icnt(', i1,'):', i5)" ) jl, ishape(jl), jl, icnt(jl)
	1066	IF( ishape(jl) /= icnt(jl) ) CALL ctl_stop( TRIM(clinfo), 'size(pv_r'//clrankpv//TRIM(ctmp1)//TRIM(ctmp2) )
	1067	END DO
[679]	1068
[8612]	1069	ENDIF
[544]	1070
[8612]	1071	! read the data
	1072	!-
	1073	IF( idvar > 0 .AND. istop == nstop ) THEN ! no additional errors until this point...
	1074	!
	1075	! find the right index of the array to be read
[679]	1076	! JMM + SM: ugly patch before getting the new version of lib_mpp)
	1077	! IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1078	! ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1079	! ENDIF
[8612]	1080	IF( llnoov ) THEN
	1081	IF( idom /= jpdom_unknown ) THEN ; ix1 = nldi ; ix2 = nlei ; iy1 = nldj ; iy2 = nlej
	1082	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1083	ENDIF
	1084	ELSE
	1085	IF( idom /= jpdom_unknown ) THEN ; ix1 = 1 ; ix2 = nlci ; iy1 = 1 ; iy2 = nlcj
	1086	ELSE ; ix1 = 1 ; ix2 = icnt(1) ; iy1 = 1 ; iy2 = icnt(2)
	1087	ENDIF
	1088	ENDIF
[679]	1089
[544]	1090	SELECT CASE (iom_file(kiomid)%iolib)
[679]	1091	CASE (jpnf90 ) ; CALL iom_nf90_get( kiomid, idvar, inbdim, istart, icnt, ix1, ix2, iy1, iy2, &
	1092	& pv_r1d, pv_r2d, pv_r3d )
[6140]	1093	CASE DEFAULT
	1094	CALL ctl_stop( TRIM(clinfo)//' accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[544]	1095	END SELECT
[679]	1096
[8612]	1097	IF( istop == nstop ) THEN ! no additional errors until this point...
	1098	IF(lwp) WRITE(numout,"(10x,' read ',a,' (rec: ',i6,') in ',a,' ok')") TRIM(cdvar), itime, TRIM(iom_file(kiomid)%name)
[1191]	1099
[8612]	1100	!--- overlap areas and extra hallows (mpp)
	1101	IF( PRESENT(pv_r2d) .AND. idom /= jpdom_unknown ) THEN
	1102	CALL lbc_lnk( pv_r2d,'Z',-999.,'no0' )
	1103	ELSEIF( PRESENT(pv_r3d) .AND. idom /= jpdom_unknown ) THEN
	1104	! this if could be simplified with the new lbc_lnk that works with any size of the 3rd dimension
	1105	IF( icnt(3) == jpk ) THEN
	1106	CALL lbc_lnk( pv_r3d,'Z',-999.,'no0' )
	1107	ELSE ! put some arbitrary value (a call to lbc_lnk will be done later...)
	1108	DO jj = nlcj+1, jpj ; pv_r3d(1:nlci, jj, :) = pv_r3d(1:nlci, nlej, :) ; END DO
	1109	DO ji = nlci+1, jpi ; pv_r3d(ji , : , :) = pv_r3d(nlei , : , :) ; END DO
	1110	ENDIF
	1111	ENDIF
	1112	!
	1113	ELSE
	1114	! return if istop == nstop is false
	1115	RETURN
	1116	ENDIF
	1117	ELSE
	1118	! return if statment idvar > 0 .AND. istop == nstop is false
	1119	RETURN
	1120	ENDIF
	1121	!
	1122	ELSE ! read using XIOS. Only if KEY_IOMPUT is defined
	1123	#if defined key_iomput
	1124	!would be good to be able to check which context is active and swap only if current is not restart
[8668]	1125	CALL iom_swap( TRIM(crxios_context) )
[8612]	1126	IF( PRESENT(pv_r3d) ) THEN
	1127	if(lwp) write(numout,*) 'XIOS RST READ (3D): ',trim(cdvar)
	1128	CALL xios_recv_field( trim(cdvar), pv_r3d)
	1129	IF(idom /= jpdom_unknown ) then
	1130	CALL lbc_lnk( pv_r3d,'Z',-999.,'no0' )
	1131	ENDIF
	1132	ELSEIF( PRESENT(pv_r2d) ) THEN
	1133	if(lwp) write(numout,*) 'XIOS RST READ (2D): ', trim(cdvar)
	1134	CALL xios_recv_field( trim(cdvar), pv_r2d)
	1135	IF(idom /= jpdom_unknown ) THEN
	1136	CALL lbc_lnk(pv_r2d,'Z',-999.,'no0')
	1137	ENDIF
	1138	ELSEIF( PRESENT(pv_r1d) ) THEN
	1139	if(lwp) write(numout,*) 'XIOS RST READ (1D): ', trim(cdvar)
	1140	CALL xios_recv_field( trim(cdvar), pv_r1d)
	1141	ENDIF
	1142	CALL iom_swap( TRIM(cxios_context) )
	1143	#else
	1144	istop = istop + 1
	1145	clinfo = 'Can not use XIOS in iom_get_123d, file: '//trim(clname)//', var:'//trim(cdvar)
	1146	#endif
	1147	ENDIF
	1148	!some final adjustments
	1149	! C1D case : always call lbc_lnk to replicate the central value over the whole 3X3 domain
	1150	IF( lk_c1d .AND. PRESENT(pv_r2d) ) CALL lbc_lnk( pv_r2d,'Z',1. )
	1151	IF( lk_c1d .AND. PRESENT(pv_r3d) ) CALL lbc_lnk( pv_r3d,'Z',1. )
	1152
	1153	!--- Apply scale_factor and offset
	1154	zscf = iom_file(kiomid)%scf(idvar) ! scale factor
	1155	zofs = iom_file(kiomid)%ofs(idvar) ! offset
	1156	IF( PRESENT(pv_r1d) ) THEN
	1157	IF( zscf /= 1. ) pv_r1d(:) = pv_r1d(:) * zscf
	1158	IF( zofs /= 0. ) pv_r1d(:) = pv_r1d(:) + zofs
	1159	ELSEIF( PRESENT(pv_r2d) ) THEN
	1160	IF( zscf /= 1.) pv_r2d(:,:) = pv_r2d(:,:) * zscf
	1161	IF( zofs /= 0.) pv_r2d(:,:) = pv_r2d(:,:) + zofs
	1162	ELSEIF( PRESENT(pv_r3d) ) THEN
	1163	IF( zscf /= 1.) pv_r3d(:,:,:) = pv_r3d(:,:,:) * zscf
	1164	IF( zofs /= 0.) pv_r3d(:,:,:) = pv_r3d(:,:,:) + zofs
	1165	ENDIF
[544]	1166	END SUBROUTINE iom_get_123d
	1167
	1168
[911]	1169	SUBROUTINE iom_gettime( kiomid, ptime, cdvar, kntime, cdunits, cdcalendar )
[544]	1170	!!--------------------------------------------------------------------
	1171	!! * SUBROUTINE iom_gettime *
	1172	!!
	1173	!! ** Purpose : read the time axis cdvar in the file
	1174	!!--------------------------------------------------------------------
[911]	1175	INTEGER , INTENT(in ) :: kiomid ! file Identifier
	1176	REAL(wp), DIMENSION(:) , INTENT( out) :: ptime ! the time axis
	1177	CHARACTER(len=*), OPTIONAL , INTENT(in ) :: cdvar ! time axis name
	1178	INTEGER , OPTIONAL , INTENT( out) :: kntime ! number of times in file
	1179	CHARACTER(len=*), OPTIONAL , INTENT( out) :: cdunits ! units attribute of time coordinate
	1180	CHARACTER(len=*), OPTIONAL , INTENT( out) :: cdcalendar ! calendar attribute of
[544]	1181	!
[911]	1182	INTEGER, DIMENSION(1) :: kdimsz
[544]	1183	INTEGER :: idvar ! id of the variable
[911]	1184	CHARACTER(LEN=32) :: tname ! local name of time coordinate
[544]	1185	CHARACTER(LEN=100) :: clinfo ! info character
	1186	!---------------------------------------------------------------------
	1187	!
[911]	1188	IF ( PRESENT(cdvar) ) THEN
	1189	tname = cdvar
	1190	ELSE
	1191	tname = iom_file(kiomid)%uldname
	1192	ENDIF
[679]	1193	IF( kiomid > 0 ) THEN
[911]	1194	clinfo = 'iom_gettime, file: '//trim(iom_file(kiomid)%name)//', var: '//trim(tname)
	1195	IF ( PRESENT(kntime) ) THEN
	1196	idvar = iom_varid( kiomid, tname, kdimsz = kdimsz )
	1197	kntime = kdimsz(1)
	1198	ELSE
	1199	idvar = iom_varid( kiomid, tname )
	1200	ENDIF
[679]	1201	!
	1202	ptime(:) = 0. ! default definition
	1203	IF( idvar > 0 ) THEN
	1204	IF( iom_file(kiomid)%ndims(idvar) == 1 ) THEN
	1205	IF( iom_file(kiomid)%luld(idvar) ) THEN
[2499]	1206	IF( iom_file(kiomid)%dimsz(1,idvar) <= size(ptime) ) THEN
[679]	1207	SELECT CASE (iom_file(kiomid)%iolib)
[911]	1208	CASE (jpnf90 ) ; CALL iom_nf90_gettime( kiomid, idvar, ptime, cdunits, cdcalendar )
[6140]	1209	CASE DEFAULT
	1210	CALL ctl_stop( TRIM(clinfo)//' accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[679]	1211	END SELECT
	1212	ELSE
	1213	WRITE(ctmp1,*) 'error with the size of ptime ',size(ptime),iom_file(kiomid)%dimsz(1,idvar)
	1214	CALL ctl_stop( trim(clinfo), trim(ctmp1) )
	1215	ENDIF
[544]	1216	ELSE
[679]	1217	CALL ctl_stop( trim(clinfo), 'variable dimension is not unlimited... use iom_get' )
[544]	1218	ENDIF
	1219	ELSE
[679]	1220	CALL ctl_stop( trim(clinfo), 'the variable has more than 1 dimension' )
[544]	1221	ENDIF
	1222	ELSE
[679]	1223	CALL ctl_stop( trim(clinfo), 'variable not found in '//iom_file(kiomid)%name )
[544]	1224	ENDIF
	1225	ENDIF
	1226	!
	1227	END SUBROUTINE iom_gettime
	1228
	1229
	1230	!!----------------------------------------------------------------------
[2528]	1231	!! INTERFACE iom_getatt
	1232	!!----------------------------------------------------------------------
[7646]	1233	SUBROUTINE iom_g0d_iatt( kiomid, cdatt, pvar, cdvar )
[2528]	1234	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1235	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	1236	INTEGER , INTENT( out) :: pvar ! read field
[7646]	1237	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
[2528]	1238	!
	1239	IF( kiomid > 0 ) THEN
	1240	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1241	SELECT CASE (iom_file(kiomid)%iolib)
[7646]	1242	CASE (jpnf90 ) ; IF( PRESENT(cdvar) ) THEN
	1243	CALL iom_nf90_getatt( kiomid, cdatt, pvar, cdvar=cdvar )
	1244	ELSE
	1245	CALL iom_nf90_getatt( kiomid, cdatt, pvar )
	1246	ENDIF
[6140]	1247	CASE DEFAULT
[7646]	1248	CALL ctl_stop( 'iom_g0d_iatt: accepted IO library is only jpnf90' )
[2528]	1249	END SELECT
	1250	ENDIF
	1251	ENDIF
[7646]	1252	END SUBROUTINE iom_g0d_iatt
[2528]	1253
[7646]	1254	SUBROUTINE iom_g0d_ratt( kiomid, cdatt, pvar, cdvar )
	1255	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1256	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	1257	REAL(wp) , INTENT( out) :: pvar ! written field
	1258	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1259	!
	1260	IF( kiomid > 0 ) THEN
	1261	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1262	SELECT CASE (iom_file(kiomid)%iolib)
	1263	CASE (jpnf90 ) ; IF( PRESENT(cdvar) ) THEN
	1264	CALL iom_nf90_getatt( kiomid, cdatt, pvar, cdvar=cdvar )
	1265	ELSE
	1266	CALL iom_nf90_getatt( kiomid, cdatt, pvar )
	1267	ENDIF
	1268	CASE DEFAULT
	1269	CALL ctl_stop( 'iom_g0d_ratt: accepted IO library is only jpnf90' )
	1270	END SELECT
	1271	ENDIF
	1272	ENDIF
	1273	END SUBROUTINE iom_g0d_ratt
[2528]	1274
[7646]	1275	SUBROUTINE iom_g0d_catt( kiomid, cdatt, pvar, cdvar )
	1276	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1277	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	1278	CHARACTER(len=*), INTENT( out) :: pvar ! written field
	1279	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1280	!
	1281	IF( kiomid > 0 ) THEN
	1282	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1283	SELECT CASE (iom_file(kiomid)%iolib)
	1284	CASE (jpnf90 ) ; IF( PRESENT(cdvar) ) THEN
	1285	CALL iom_nf90_getatt( kiomid, cdatt, pvar, cdvar=cdvar )
	1286	ELSE
	1287	CALL iom_nf90_getatt( kiomid, cdatt, pvar )
	1288	ENDIF
	1289	CASE DEFAULT
	1290	CALL ctl_stop( 'iom_g0d_ratt: accepted IO library is only jpnf90' )
	1291	END SELECT
	1292	ENDIF
	1293	ENDIF
	1294	END SUBROUTINE iom_g0d_catt
	1295
[2528]	1296	!!----------------------------------------------------------------------
[7646]	1297	!! INTERFACE iom_putatt
	1298	!!----------------------------------------------------------------------
	1299	SUBROUTINE iom_p0d_iatt( kiomid, cdatt, pvar, cdvar )
	1300	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1301	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	1302	INTEGER , INTENT(in ) :: pvar ! write field
	1303	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1304	!
	1305	IF( kiomid > 0 ) THEN
	1306	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1307	SELECT CASE (iom_file(kiomid)%iolib)
	1308	CASE (jpnf90 ) ; IF( PRESENT(cdvar) ) THEN
	1309	CALL iom_nf90_putatt( kiomid, cdatt, pvar, cdvar=cdvar )
	1310	ELSE
	1311	CALL iom_nf90_putatt( kiomid, cdatt, pvar )
	1312	ENDIF
	1313	CASE DEFAULT
	1314	CALL ctl_stop( 'iom_p0d_iatt: accepted IO library is only jpnf90' )
	1315	END SELECT
	1316	ENDIF
	1317	ENDIF
	1318	END SUBROUTINE iom_p0d_iatt
	1319
	1320	SUBROUTINE iom_p0d_ratt( kiomid, cdatt, pvar, cdvar )
	1321	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1322	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	1323	REAL(wp) , INTENT(in ) :: pvar ! write field
	1324	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1325	!
	1326	IF( kiomid > 0 ) THEN
	1327	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1328	SELECT CASE (iom_file(kiomid)%iolib)
	1329	CASE (jpnf90 ) ; IF( PRESENT(cdvar) ) THEN
	1330	CALL iom_nf90_putatt( kiomid, cdatt, pvar, cdvar=cdvar )
	1331	ELSE
	1332	CALL iom_nf90_putatt( kiomid, cdatt, pvar )
	1333	ENDIF
	1334	CASE DEFAULT
	1335	CALL ctl_stop( 'iom_p0d_ratt: accepted IO library is only jpnf90' )
	1336	END SELECT
	1337	ENDIF
	1338	ENDIF
	1339	END SUBROUTINE iom_p0d_ratt
	1340
	1341	SUBROUTINE iom_p0d_catt( kiomid, cdatt, pvar, cdvar )
	1342	INTEGER , INTENT(in ) :: kiomid ! Identifier of the file
	1343	CHARACTER(len=*), INTENT(in ) :: cdatt ! Name of the attribute
	1344	CHARACTER(len=*), INTENT(in ) :: pvar ! write field
	1345	CHARACTER(len=*), INTENT(in ), OPTIONAL :: cdvar ! Name of the variable
	1346	!
	1347	IF( kiomid > 0 ) THEN
	1348	IF( iom_file(kiomid)%nfid > 0 ) THEN
	1349	SELECT CASE (iom_file(kiomid)%iolib)
	1350	CASE (jpnf90 ) ; IF( PRESENT(cdvar) ) THEN
	1351	CALL iom_nf90_putatt( kiomid, cdatt, pvar, cdvar=cdvar )
	1352	ELSE
	1353	CALL iom_nf90_putatt( kiomid, cdatt, pvar )
	1354	ENDIF
	1355	CASE DEFAULT
	1356	CALL ctl_stop( 'iom_p0d_ratt: accepted IO library is only jpnf90' )
	1357	END SELECT
	1358	ENDIF
	1359	ENDIF
	1360	END SUBROUTINE iom_p0d_catt
	1361
	1362	!!----------------------------------------------------------------------
[544]	1363	!! INTERFACE iom_rstput
	1364	!!----------------------------------------------------------------------
[550]	1365	SUBROUTINE iom_rp0d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	1366	INTEGER , INTENT(in) :: kt ! ocean time-step
	1367	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1368	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1369	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[556]	1370	REAL(wp) , INTENT(in) :: pvar ! written field
[544]	1371	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	1372	INTEGER :: ivid ! variable id
[679]	1373	IF( kiomid > 0 ) THEN
	1374	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	1375	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	1376	SELECT CASE (iom_file(kiomid)%iolib)
	1377	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r0d = pvar )
[6140]	1378	CASE DEFAULT
	1379	CALL ctl_stop( 'iom_rp0d: accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[679]	1380	END SELECT
	1381	ENDIF
	1382	ENDIF
[550]	1383	END SUBROUTINE iom_rp0d
[544]	1384
[550]	1385	SUBROUTINE iom_rp1d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	1386	INTEGER , INTENT(in) :: kt ! ocean time-step
	1387	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1388	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1389	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1390	REAL(wp) , INTENT(in), DIMENSION( :) :: pvar ! written field
[544]	1391	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	1392	INTEGER :: ivid ! variable id
[679]	1393	IF( kiomid > 0 ) THEN
	1394	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	1395	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	1396	SELECT CASE (iom_file(kiomid)%iolib)
	1397	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r1d = pvar )
[6140]	1398	CASE DEFAULT
	1399	CALL ctl_stop( 'iom_rp1d: accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[679]	1400	END SELECT
	1401	ENDIF
	1402	ENDIF
[550]	1403	END SUBROUTINE iom_rp1d
[544]	1404
[550]	1405	SUBROUTINE iom_rp2d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	1406	INTEGER , INTENT(in) :: kt ! ocean time-step
	1407	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1408	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1409	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1410	REAL(wp) , INTENT(in), DIMENSION(:, : ) :: pvar ! written field
[544]	1411	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	1412	INTEGER :: ivid ! variable id
[679]	1413	IF( kiomid > 0 ) THEN
	1414	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	1415	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	1416	SELECT CASE (iom_file(kiomid)%iolib)
	1417	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r2d = pvar )
[6140]	1418	CASE DEFAULT
	1419	CALL ctl_stop( 'iom_rp2d: accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[679]	1420	END SELECT
	1421	ENDIF
	1422	ENDIF
[550]	1423	END SUBROUTINE iom_rp2d
[544]	1424
[550]	1425	SUBROUTINE iom_rp3d( kt, kwrite, kiomid, cdvar, pvar, ktype )
[544]	1426	INTEGER , INTENT(in) :: kt ! ocean time-step
	1427	INTEGER , INTENT(in) :: kwrite ! writing time-step
	1428	INTEGER , INTENT(in) :: kiomid ! Identifier of the file
	1429	CHARACTER(len=*), INTENT(in) :: cdvar ! time axis name
[2715]	1430	REAL(wp) , INTENT(in), DIMENSION(:,:,:) :: pvar ! written field
[544]	1431	INTEGER , INTENT(in), OPTIONAL :: ktype ! variable external type
	1432	INTEGER :: ivid ! variable id
[679]	1433	IF( kiomid > 0 ) THEN
	1434	IF( iom_file(kiomid)%nfid > 0 ) THEN
[745]	1435	ivid = iom_varid( kiomid, cdvar, ldstop = .FALSE. )
[679]	1436	SELECT CASE (iom_file(kiomid)%iolib)
	1437	CASE (jpnf90 ) ; CALL iom_nf90_rstput( kt, kwrite, kiomid, cdvar, ivid, ktype, pv_r3d = pvar )
[6140]	1438	CASE DEFAULT
	1439	CALL ctl_stop( 'iom_rp3d: accepted IO library is only jpnf90 (jpioipsl option has been removed)' )
[679]	1440	END SELECT
	1441	ENDIF
	1442	ENDIF
[550]	1443	END SUBROUTINE iom_rp3d
[1359]	1444
	1445
[544]	1446	!!----------------------------------------------------------------------
[1457]	1447	!! INTERFACE iom_put
[1359]	1448	!!----------------------------------------------------------------------
[1738]	1449	SUBROUTINE iom_p0d( cdname, pfield0d )
	1450	CHARACTER(LEN=*), INTENT(in) :: cdname
	1451	REAL(wp) , INTENT(in) :: pfield0d
[5426]	1452	REAL(wp) , DIMENSION(jpi,jpj) :: zz ! masson
[1738]	1453	#if defined key_iomput
[5426]	1454	zz(:,:)=pfield0d
	1455	CALL xios_send_field(cdname, zz)
	1456	!CALL xios_send_field(cdname, (/pfield0d/))
[1738]	1457	#else
	1458	IF( .FALSE. ) WRITE(numout,*) cdname, pfield0d ! useless test to avoid compilation warnings
	1459	#endif
	1460	END SUBROUTINE iom_p0d
	1461
[3294]	1462	SUBROUTINE iom_p1d( cdname, pfield1d )
	1463	CHARACTER(LEN=*) , INTENT(in) :: cdname
	1464	REAL(wp), DIMENSION(:), INTENT(in) :: pfield1d
	1465	#if defined key_iomput
[3695]	1466	CALL xios_send_field( cdname, RESHAPE( (/pfield1d/), (/1,1,SIZE(pfield1d)/) ) )
[3294]	1467	#else
	1468	IF( .FALSE. ) WRITE(numout,*) cdname, pfield1d ! useless test to avoid compilation warnings
	1469	#endif
	1470	END SUBROUTINE iom_p1d
	1471
[1359]	1472	SUBROUTINE iom_p2d( cdname, pfield2d )
	1473	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1474	REAL(wp), DIMENSION(:,:), INTENT(in) :: pfield2d
[1412]	1475	#if defined key_iomput
[3695]	1476	CALL xios_send_field(cdname, pfield2d)
[1520]	1477	#else
	1478	IF( .FALSE. ) WRITE(numout,*) cdname, pfield2d ! useless test to avoid compilation warnings
[1359]	1479	#endif
	1480	END SUBROUTINE iom_p2d
[544]	1481
[1359]	1482	SUBROUTINE iom_p3d( cdname, pfield3d )
	1483	CHARACTER(LEN=*) , INTENT(in) :: cdname
[2715]	1484	REAL(wp), DIMENSION(:,:,:), INTENT(in) :: pfield3d
[1412]	1485	#if defined key_iomput
[3695]	1486	CALL xios_send_field(cdname, pfield3d)
[1520]	1487	#else
	1488	IF( .FALSE. ) WRITE(numout,*) cdname, pfield3d ! useless test to avoid compilation warnings
[1359]	1489	#endif
	1490	END SUBROUTINE iom_p3d
	1491	!!----------------------------------------------------------------------
[544]	1492
[1412]	1493	#if defined key_iomput
[1359]	1494
[4148]	1495	SUBROUTINE iom_set_domain_attr( cdid, ni_glo, nj_glo, ibegin, jbegin, ni, nj, zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj, &
[5363]	1496	& data_dim, data_ibegin, data_ni, data_jbegin, data_nj, lonvalue, latvalue, mask, &
[5415]	1497	& nvertex, bounds_lon, bounds_lat, area )
[5363]	1498	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1499	INTEGER , OPTIONAL, INTENT(in) :: ni_glo, nj_glo, ibegin, jbegin, ni, nj
	1500	INTEGER , OPTIONAL, INTENT(in) :: data_dim, data_ibegin, data_ni, data_jbegin, data_nj
	1501	INTEGER , OPTIONAL, INTENT(in) :: zoom_ibegin, zoom_jbegin, zoom_ni, zoom_nj, nvertex
	1502	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: lonvalue, latvalue
[5415]	1503	REAL(wp), DIMENSION(:,:) , OPTIONAL, INTENT(in) :: bounds_lon, bounds_lat, area
[7646]	1504	LOGICAL, DIMENSION(:) , OPTIONAL, INTENT(in) :: mask
[3695]	1505
[7646]	1506
[4148]	1507	IF ( xios_is_valid_domain (cdid) ) THEN
	1508	CALL xios_set_domain_attr ( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1509	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1510	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1511	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear')
[8612]	1512	ENDIF
[4148]	1513	IF ( xios_is_valid_domaingroup(cdid) ) THEN
	1514	CALL xios_set_domaingroup_attr( cdid, ni_glo=ni_glo, nj_glo=nj_glo, ibegin=ibegin, jbegin=jbegin, ni=ni, nj=nj, &
	1515	& data_dim=data_dim, data_ibegin=data_ibegin, data_ni=data_ni, data_jbegin=data_jbegin, data_nj=data_nj , &
[7646]	1516	& lonvalue_1D=lonvalue, latvalue_1D=latvalue, mask_1D=mask, nvertex=nvertex, bounds_lon_1D=bounds_lon, &
	1517	& bounds_lat_1D=bounds_lat, area=area, type='curvilinear' )
[3695]	1518	ENDIF
[7646]	1519
[4148]	1520	CALL xios_solve_inheritance()
[3695]	1521
	1522	END SUBROUTINE iom_set_domain_attr
	1523
	1524
[7646]	1525	SUBROUTINE iom_set_zoom_domain_attr( cdid, ibegin, jbegin, ni, nj)
	1526	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1527	INTEGER , OPTIONAL, INTENT(in) :: ibegin, jbegin, ni, nj
	1528
	1529	IF ( xios_is_valid_zoom_domain (cdid) ) THEN
	1530	CALL xios_set_zoom_domain_attr ( cdid, ibegin=ibegin, jbegin=jbegin, ni=ni, &
	1531	& nj=nj)
	1532	ENDIF
	1533	END SUBROUTINE iom_set_zoom_domain_attr
	1534
	1535
[5415]	1536	SUBROUTINE iom_set_axis_attr( cdid, paxis, bounds )
[4148]	1537	CHARACTER(LEN=*) , INTENT(in) :: cdid
[5415]	1538	REAL(wp), DIMENSION(:) , OPTIONAL, INTENT(in) :: paxis
	1539	REAL(wp), DIMENSION(:,:), OPTIONAL, INTENT(in) :: bounds
[7646]	1540
[5415]	1541	IF ( PRESENT(paxis) ) THEN
[7646]	1542	IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, n_glo=SIZE(paxis), value=paxis )
	1543	IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, n_glo=SIZE(paxis), value=paxis )
[5415]	1544	ENDIF
	1545	IF ( xios_is_valid_axis (cdid) ) CALL xios_set_axis_attr ( cdid, bounds=bounds )
	1546	IF ( xios_is_valid_axisgroup(cdid) ) CALL xios_set_axisgroup_attr( cdid, bounds=bounds )
[4148]	1547	CALL xios_solve_inheritance()
[3737]	1548	END SUBROUTINE iom_set_axis_attr
	1549
	1550
[4148]	1551	SUBROUTINE iom_set_field_attr( cdid, freq_op, freq_offset )
	1552	CHARACTER(LEN=*) , INTENT(in) :: cdid
[7646]	1553	TYPE(xios_duration),OPTIONAL , INTENT(in) :: freq_op
	1554	TYPE(xios_duration),OPTIONAL , INTENT(in) :: freq_offset
[5656]	1555	IF ( xios_is_valid_field (cdid) ) CALL xios_set_field_attr &
	1556	& ( cdid, freq_op=freq_op, freq_offset=freq_offset )
	1557	IF ( xios_is_valid_fieldgroup(cdid) ) CALL xios_set_fieldgroup_attr &
	1558	& ( cdid, freq_op=freq_op, freq_offset=freq_offset )
[4148]	1559	CALL xios_solve_inheritance()
[3695]	1560	END SUBROUTINE iom_set_field_attr
	1561
	1562
[4148]	1563	SUBROUTINE iom_set_file_attr( cdid, name, name_suffix )
	1564	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3695]	1565	CHARACTER(LEN=*),OPTIONAL , INTENT(in) :: name, name_suffix
[4148]	1566	IF ( xios_is_valid_file (cdid) ) CALL xios_set_file_attr ( cdid, name=name, name_suffix=name_suffix )
	1567	IF ( xios_is_valid_filegroup(cdid) ) CALL xios_set_filegroup_attr( cdid, name=name, name_suffix=name_suffix )
	1568	CALL xios_solve_inheritance()
[3771]	1569	END SUBROUTINE iom_set_file_attr
[3695]	1570
	1571
[4148]	1572	SUBROUTINE iom_get_file_attr( cdid, name, name_suffix, output_freq )
	1573	CHARACTER(LEN=*) , INTENT(in ) :: cdid
[7646]	1574	CHARACTER(LEN=*),OPTIONAL , INTENT(out) :: name, name_suffix
	1575	TYPE(xios_duration), OPTIONAL , INTENT(out) :: output_freq
[4148]	1576	LOGICAL :: llexist1,llexist2,llexist3
	1577	!---------------------------------------------------------------------
	1578	IF( PRESENT( name ) ) name = '' ! default values
	1579	IF( PRESENT( name_suffix ) ) name_suffix = ''
[7646]	1580	IF( PRESENT( output_freq ) ) output_freq = xios_duration(0,0,0,0,0,0)
[4148]	1581	IF ( xios_is_valid_file (cdid) ) THEN
	1582	CALL xios_solve_inheritance()
	1583	CALL xios_is_defined_file_attr ( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1584	IF(llexist1) CALL xios_get_file_attr ( cdid, name = name )
	1585	IF(llexist2) CALL xios_get_file_attr ( cdid, name_suffix = name_suffix )
	1586	IF(llexist3) CALL xios_get_file_attr ( cdid, output_freq = output_freq )
	1587	ENDIF
	1588	IF ( xios_is_valid_filegroup(cdid) ) THEN
	1589	CALL xios_solve_inheritance()
	1590	CALL xios_is_defined_filegroup_attr( cdid, name = llexist1, name_suffix = llexist2, output_freq = llexist3)
	1591	IF(llexist1) CALL xios_get_filegroup_attr( cdid, name = name )
	1592	IF(llexist2) CALL xios_get_filegroup_attr( cdid, name_suffix = name_suffix )
	1593	IF(llexist3) CALL xios_get_filegroup_attr( cdid, output_freq = output_freq )
	1594	ENDIF
	1595	END SUBROUTINE iom_get_file_attr
	1596
	1597
	1598	SUBROUTINE iom_set_grid_attr( cdid, mask )
	1599	CHARACTER(LEN=*) , INTENT(in) :: cdid
[3771]	1600	LOGICAL, DIMENSION(:,:,:), OPTIONAL, INTENT(in) :: mask
[7646]	1601	IF ( xios_is_valid_grid (cdid) ) CALL xios_set_grid_attr ( cdid, mask_3D=mask )
	1602	IF ( xios_is_valid_gridgroup(cdid) ) CALL xios_set_gridgroup_attr( cdid, mask_3D=mask )
[4148]	1603	CALL xios_solve_inheritance()
[3771]	1604	END SUBROUTINE iom_set_grid_attr
[3695]	1605
[4152]	1606	SUBROUTINE iom_setkt( kt, cdname )
	1607	INTEGER , INTENT(in) :: kt
	1608	CHARACTER(LEN=*), INTENT(in) :: cdname
	1609	!
	1610	CALL iom_swap( cdname ) ! swap to cdname context
	1611	CALL xios_update_calendar(kt)
[5407]	1612	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4152]	1613	!
	1614	END SUBROUTINE iom_setkt
[3695]	1615
[4152]	1616	SUBROUTINE iom_context_finalize( cdname )
	1617	CHARACTER(LEN=*), INTENT(in) :: cdname
	1618	!
[4990]	1619	IF( xios_is_valid_context(cdname) ) THEN
	1620	CALL iom_swap( cdname ) ! swap to cdname context
	1621	CALL xios_context_finalize() ! finalize the context
[5407]	1622	IF( cdname /= TRIM(cxios_context) ) CALL iom_swap( TRIM(cxios_context) ) ! return back to nemo context
[4990]	1623	ENDIF
	1624	!
[4152]	1625	END SUBROUTINE iom_context_finalize
	1626
	1627
[8668]	1628	SUBROUTINE set_grid( cdgrd, plon, plat, ldxios )
[1359]	1629	!!----------------------------------------------------------------------
[4148]	1630	!! * ROUTINE set_grid *
[1359]	1631	!!
[1725]	1632	!! ** Purpose : define horizontal grids
[1359]	1633	!!
	1634	!!----------------------------------------------------------------------
[3771]	1635	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
[1359]	1636	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon
	1637	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
[3771]	1638	!
	1639	REAL(wp), DIMENSION(jpi,jpj,jpk) :: zmask
[3695]	1640	INTEGER :: ni,nj
[8668]	1641	LOGICAL, INTENT(IN) :: ldxios
[3695]	1642
	1643	ni=nlei-nldi+1 ; nj=nlej-nldj+1
[1359]	1644
[7646]	1645	CALL iom_set_domain_attr("grid_"//cdgrd, ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[3771]	1646	CALL iom_set_domain_attr("grid_"//cdgrd, data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	1647	CALL iom_set_domain_attr("grid_"//cdgrd, lonvalue = RESHAPE(plon(nldi:nlei, nldj:nlej),(/ ni*nj /)), &
	1648	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
	1649
[8668]	1650	IF ( ln_mskland.AND.(.NOT.ldxios) ) THEN
[3771]	1651	! mask land points, keep values on coast line -> specific mask for U, V and W points
	1652	SELECT CASE ( cdgrd )
	1653	CASE('T') ; zmask(:,:,:) = tmask(:,:,:)
	1654	CASE('U') ; zmask(2:jpim1,:,:) = tmask(2:jpim1,:,:) + tmask(3:jpi,:,:) ; CALL lbc_lnk( zmask, 'U', 1. )
[5043]	1655	CASE('V') ; zmask(:,2:jpjm1,:) = tmask(:,2:jpjm1,:) + tmask(:,3:jpj,:) ; CALL lbc_lnk( zmask, 'V', 1. )
[3771]	1656	CASE('W') ; zmask(:,:,2:jpk ) = tmask(:,:,1:jpkm1) + tmask(:,:,2:jpk) ; zmask(:,:,1) = tmask(:,:,1)
	1657	END SELECT
	1658	!
[7646]	1659	CALL iom_set_domain_attr( "grid_"//cdgrd , mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,1),(/ni*nj /)) /= 0. )
[4148]	1660	CALL iom_set_grid_attr ( "grid_"//cdgrd//"_3D", mask = RESHAPE(zmask(nldi:nlei,nldj:nlej,:),(/ni,nj,jpk/)) /= 0. )
[3771]	1661	ENDIF
[3695]	1662
[1359]	1663	END SUBROUTINE set_grid
	1664
[1725]	1665
[5415]	1666	SUBROUTINE set_grid_bounds( cdgrd, plon_cnr, plat_cnr, plon_pnt, plat_pnt )
[5363]	1667	!!----------------------------------------------------------------------
	1668	!! * ROUTINE set_grid_bounds *
	1669	!!
	1670	!! ** Purpose : define horizontal grid corners
	1671	!!
	1672	!!----------------------------------------------------------------------
	1673	CHARACTER(LEN=1) , INTENT(in) :: cdgrd
	1674	!
[5415]	1675	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plon_cnr, plat_cnr ! Lat/lon coordinates of a contiguous vertex of cell (i,j)
	1676	REAL(wp), DIMENSION(jpi,jpj), OPTIONAL, INTENT(in) :: plon_pnt, plat_pnt ! Lat/lon coordinates of the point of cell (i,j)
	1677	!
[5363]	1678	REAL(wp), ALLOCATABLE, DIMENSION(:,:,:,:) :: z_bnds ! Lat/lon coordinates of the vertices of cell (i,j)
	1679	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_fld ! Working array to determine where to rotate cells
	1680	REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: z_rot ! Lat/lon working array for rotation of cells
	1681	!
	1682	INTEGER :: icnr, jcnr ! Offset such that the vertex coordinate (i+icnr,j+jcnr)
	1683	! ! represents the bottom-left corner of cell (i,j)
	1684	INTEGER :: ji, jj, jn, ni, nj
	1685
[5415]	1686	ALLOCATE( z_bnds(4,jpi,jpj,2), z_fld(jpi,jpj), z_rot(4,2) )
[5363]	1687
[5415]	1688	! Offset of coordinate representing bottom-left corner
[5363]	1689	SELECT CASE ( TRIM(cdgrd) )
[8612]	1690	CASE ('T', 'W', 'N')
[5363]	1691	icnr = -1 ; jcnr = -1
	1692	CASE ('U')
	1693	icnr = 0 ; jcnr = -1
	1694	CASE ('V')
	1695	icnr = -1 ; jcnr = 0
	1696	END SELECT
	1697
	1698	ni = nlei-nldi+1 ; nj = nlej-nldj+1 ! Dimensions of subdomain interior
	1699
	1700	z_fld(:,:) = 1._wp
	1701	CALL lbc_lnk( z_fld, cdgrd, -1. ) ! Working array for location of northfold
	1702
	1703	! Cell vertices that can be defined
	1704	DO jj = 2, jpjm1
	1705	DO ji = 2, jpim1
[5415]	1706	z_bnds(1,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	1707	z_bnds(2,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	1708	z_bnds(3,ji,jj,1) = plat_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	1709	z_bnds(4,ji,jj,1) = plat_cnr(ji+icnr, jj+jcnr+1) ! Top-left
	1710	z_bnds(1,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr ) ! Bottom-left
	1711	z_bnds(2,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr ) ! Bottom-right
	1712	z_bnds(3,ji,jj,2) = plon_cnr(ji+icnr+1,jj+jcnr+1) ! Top-right
	1713	z_bnds(4,ji,jj,2) = plon_cnr(ji+icnr, jj+jcnr+1) ! Top-left
[5363]	1714	END DO
	1715	END DO
	1716
	1717	! Cell vertices on boundries
	1718	DO jn = 1, 4
	1719	CALL lbc_lnk( z_bnds(jn,:,:,1), cdgrd, 1., pval=999._wp )
	1720	CALL lbc_lnk( z_bnds(jn,:,:,2), cdgrd, 1., pval=999._wp )
	1721	END DO
	1722
[5415]	1723	! Zero-size cells at closed boundaries if cell points provided,
	1724	! otherwise they are closed cells with unrealistic bounds
	1725	IF( PRESENT(plon_pnt) .AND. PRESENT(plat_pnt) ) THEN
	1726	IF( (nbondi == -1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	1727	DO jn = 1, 4 ! (West or jpni = 1), closed E-W
	1728	z_bnds(jn,1,:,1) = plat_pnt(1,:) ; z_bnds(jn,1,:,2) = plon_pnt(1,:)
	1729	END DO
	1730	ENDIF
	1731	IF( (nbondi == 1 .OR. nbondi == 2) .AND. .NOT. (jperio == 1 .OR. jperio == 4 .OR. jperio == 6) ) THEN
	1732	DO jn = 1, 4 ! (East or jpni = 1), closed E-W
	1733	z_bnds(jn,nlci,:,1) = plat_pnt(nlci,:) ; z_bnds(jn,nlci,:,2) = plon_pnt(nlci,:)
	1734	END DO
	1735	ENDIF
	1736	IF( nbondj == -1 .OR. (nbondj == 2 .AND. jperio /= 2) ) THEN
	1737	DO jn = 1, 4 ! South or (jpnj = 1, not symmetric)
	1738	z_bnds(jn,:,1,1) = plat_pnt(:,1) ; z_bnds(jn,:,1,2) = plon_pnt(:,1)
	1739	END DO
	1740	ENDIF
	1741	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio < 3 ) THEN
	1742	DO jn = 1, 4 ! (North or jpnj = 1), no north fold
	1743	z_bnds(jn,:,nlcj,1) = plat_pnt(:,nlcj) ; z_bnds(jn,:,nlcj,2) = plon_pnt(:,nlcj)
	1744	END DO
	1745	ENDIF
[5363]	1746	ENDIF
	1747
	1748	! Rotate cells at the north fold
	1749	IF( (nbondj == 1 .OR. nbondj == 2) .AND. jperio >= 3 ) THEN
	1750	DO jj = 1, jpj
	1751	DO ji = 1, jpi
	1752	IF( z_fld(ji,jj) == -1. ) THEN
	1753	z_rot(1,:) = z_bnds(3,ji,jj,:) ; z_rot(2,:) = z_bnds(4,ji,jj,:)
	1754	z_rot(3,:) = z_bnds(1,ji,jj,:) ; z_rot(4,:) = z_bnds(2,ji,jj,:)
	1755	z_bnds(:,ji,jj,:) = z_rot(:,:)
	1756	ENDIF
	1757	END DO
	1758	END DO
	1759
	1760	! Invert cells at the symmetric equator
	1761	ELSE IF( nbondj == 2 .AND. jperio == 2 ) THEN
	1762	DO ji = 1, jpi
	1763	z_rot(1:2,:) = z_bnds(3:4,ji,1,:)
	1764	z_rot(3:4,:) = z_bnds(1:2,ji,1,:)
	1765	z_bnds(:,ji,1,:) = z_rot(:,:)
	1766	END DO
	1767	ENDIF
	1768
	1769	CALL iom_set_domain_attr("grid_"//cdgrd, bounds_lat = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,1),(/ 4,ni*nj /)), &
	1770	bounds_lon = RESHAPE(z_bnds(:,nldi:nlei,nldj:nlej,2),(/ 4,ni*nj /)), nvertex=4 )
	1771
[5415]	1772	DEALLOCATE( z_bnds, z_fld, z_rot )
[5363]	1773
	1774	END SUBROUTINE set_grid_bounds
	1775
	1776
[5385]	1777	SUBROUTINE set_grid_znl( plat )
	1778	!!----------------------------------------------------------------------
	1779	!! * ROUTINE set_grid_znl *
	1780	!!
	1781	!! ** Purpose : define grids for zonal mean
	1782	!!
	1783	!!----------------------------------------------------------------------
	1784	REAL(wp), DIMENSION(jpi,jpj), INTENT(in) :: plat
	1785	!
	1786	REAL(wp), DIMENSION(:), ALLOCATABLE :: zlon
	1787	INTEGER :: ni,nj, ix, iy
	1788
	1789
	1790	ni=nlei-nldi+1 ; nj=nlej-nldj+1 ! define zonal mean domain (jpj*jpk)
	1791	ALLOCATE( zlon(ni*nj) ) ; zlon(:) = 0.
	1792
[8573]	1793	CALL dom_ngb( -168.53, 65.03, ix, iy, 'T' ) ! i-line that passes through Bering Strait: Reference latitude (used in plots)
[7646]	1794	CALL iom_set_domain_attr("gznl", ni_glo=jpiglo, nj_glo=jpjglo, ibegin=nimpp+nldi-2, jbegin=njmpp+nldj-2, ni=ni, nj=nj)
[5385]	1795	CALL iom_set_domain_attr("gznl", data_dim=2, data_ibegin = 1-nldi, data_ni = jpi, data_jbegin = 1-nldj, data_nj = jpj)
	1796	CALL iom_set_domain_attr("gznl", lonvalue = zlon, &
	1797	& latvalue = RESHAPE(plat(nldi:nlei, nldj:nlej),(/ ni*nj /)))
[7646]	1798	CALL iom_set_zoom_domain_attr ("ptr", ibegin=ix-1, jbegin=0, ni=1, nj=jpjglo)
[5385]	1799	!
	1800	CALL iom_update_file_name('ptr')
	1801	!
	1802	END SUBROUTINE set_grid_znl
	1803
[1738]	1804	SUBROUTINE set_scalar
	1805	!!----------------------------------------------------------------------
[4148]	1806	!! * ROUTINE set_scalar *
[1738]	1807	!!
	1808	!! ** Purpose : define fake grids for scalar point
	1809	!!
	1810	!!----------------------------------------------------------------------
[5426]	1811	REAL(wp), DIMENSION(1) :: zz = 1.
[1738]	1812	!!----------------------------------------------------------------------
[7646]	1813
	1814	CALL iom_set_domain_attr('scalarpoint', ni_glo=jpnij, nj_glo=1, ibegin=narea-1, jbegin=0, ni=1, nj=1)
[5426]	1815	CALL iom_set_domain_attr('scalarpoint', data_dim=2, data_ibegin = 1, data_ni = 1, data_jbegin = 1, data_nj = 1)
[5415]	1816
[4689]	1817	zz=REAL(narea,wp)
[5426]	1818	CALL iom_set_domain_attr('scalarpoint', lonvalue=zz, latvalue=zz)
[1738]	1819
	1820	END SUBROUTINE set_scalar
	1821
	1822
[1725]	1823	SUBROUTINE set_xmlatt
	1824	!!----------------------------------------------------------------------
[4148]	1825	!! * ROUTINE set_xmlatt *
[1725]	1826	!!
	1827	!! ** Purpose : automatic definitions of some of the xml attributs...
	1828	!!
	1829	!!----------------------------------------------------------------------
	1830	CHARACTER(len=1),DIMENSION( 3) :: clgrd ! suffix name
[4148]	1831	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	1832	CHARACTER(len=1) :: cl1 ! 1 character
[5003]	1833	CHARACTER(len=2) :: cl2 ! 2 characters
	1834	CHARACTER(len=3) :: cl3 ! 3 characters
[4148]	1835	INTEGER :: ji, jg ! loop counters
[1725]	1836	INTEGER :: ix, iy ! i-,j- index
	1837	REAL(wp) ,DIMENSION(11) :: zlontao ! longitudes of tao moorings
	1838	REAL(wp) ,DIMENSION( 7) :: zlattao ! latitudes of tao moorings
	1839	REAL(wp) ,DIMENSION( 4) :: zlonrama ! longitudes of rama moorings
	1840	REAL(wp) ,DIMENSION(11) :: zlatrama ! latitudes of rama moorings
	1841	REAL(wp) ,DIMENSION( 3) :: zlonpira ! longitudes of pirata moorings
	1842	REAL(wp) ,DIMENSION( 9) :: zlatpira ! latitudes of pirata moorings
[7646]	1843	TYPE(xios_duration) :: f_op, f_of
[1725]	1844	!!----------------------------------------------------------------------
	1845	!
	1846	! frequency of the call of iom_put (attribut: freq_op)
[7646]	1847	f_op%timestep = 1 ; f_of%timestep = 0 ; CALL iom_set_field_attr('field_definition', freq_op=f_op, freq_offset=f_of)
	1848	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC' , freq_op=f_op, freq_offset=f_of)
	1849	f_op%timestep = nn_fsbc ; f_of%timestep = 0 ; CALL iom_set_field_attr('SBC_scalar' , freq_op=f_op, freq_offset=f_of)
	1850	f_op%timestep = nn_dttrc ; f_of%timestep = 0 ; CALL iom_set_field_attr('ptrc_T' , freq_op=f_op, freq_offset=f_of)
	1851	f_op%timestep = nn_dttrc ; f_of%timestep = 0 ; CALL iom_set_field_attr('diad_T' , freq_op=f_op, freq_offset=f_of)
	1852
[1725]	1853	! output file names (attribut: name)
[4148]	1854	DO ji = 1, 9
	1855	WRITE(cl1,'(i1)') ji
	1856	CALL iom_update_file_name('file'//cl1)
[1725]	1857	END DO
[4148]	1858	DO ji = 1, 99
	1859	WRITE(cl2,'(i2.2)') ji
	1860	CALL iom_update_file_name('file'//cl2)
	1861	END DO
[5003]	1862	DO ji = 1, 999
	1863	WRITE(cl3,'(i3.3)') ji
	1864	CALL iom_update_file_name('file'//cl3)
	1865	END DO
[1725]	1866
	1867	! Zooms...
	1868	clgrd = (/ 'T', 'U', 'W' /)
	1869	DO jg = 1, SIZE(clgrd) ! grid type
	1870	cl1 = clgrd(jg)
	1871	! Equatorial section (attributs: jbegin, ni, name_suffix)
	1872	CALL dom_ngb( 0., 0., ix, iy, cl1 )
[7646]	1873	CALL iom_set_zoom_domain_attr ('Eq'//cl1, jbegin=iy-1, ni=jpiglo)
[4148]	1874	CALL iom_get_file_attr ('Eq'//cl1, name_suffix = clsuff )
	1875	CALL iom_set_file_attr ('Eq'//cl1, name_suffix = TRIM(clsuff)//'_Eq')
	1876	CALL iom_update_file_name('Eq'//cl1)
[1725]	1877	END DO
	1878	! TAO moorings (attributs: ibegin, jbegin, name_suffix)
	1879	zlontao = (/ 137.0, 147.0, 156.0, 165.0, -180.0, -170.0, -155.0, -140.0, -125.0, -110.0, -95.0 /)
	1880	zlattao = (/ -8.0, -5.0, -2.0, 0.0, 2.0, 5.0, 8.0 /)
	1881	CALL set_mooring( zlontao, zlattao )
	1882	! RAMA moorings (attributs: ibegin, jbegin, name_suffix)
	1883	zlonrama = (/ 55.0, 67.0, 80.5, 90.0 /)
	1884	zlatrama = (/ -16.0, -12.0, -8.0, -4.0, -1.5, 0.0, 1.5, 4.0, 8.0, 12.0, 15.0 /)
	1885	CALL set_mooring( zlonrama, zlatrama )
	1886	! PIRATA moorings (attributs: ibegin, jbegin, name_suffix)
	1887	zlonpira = (/ -38.0, -23.0, -10.0 /)
	1888	zlatpira = (/ -19.0, -14.0, -8.0, 0.0, 4.0, 8.0, 12.0, 15.0, 20.0 /)
	1889	CALL set_mooring( zlonpira, zlatpira )
[5147]	1890
[1725]	1891
	1892	END SUBROUTINE set_xmlatt
	1893
	1894
	1895	SUBROUTINE set_mooring( plon, plat)
	1896	!!----------------------------------------------------------------------
[4148]	1897	!! * ROUTINE set_mooring *
[1725]	1898	!!
	1899	!! ** Purpose : automatic definitions of moorings xml attributs...
	1900	!!
	1901	!!----------------------------------------------------------------------
	1902	REAL(wp), DIMENSION(:), INTENT(in) :: plon, plat ! longitudes/latitudes oft the mooring
	1903	!
	1904	!!$ CHARACTER(len=1),DIMENSION(4) :: clgrd = (/ 'T', 'U', 'V', 'W' /) ! suffix name
	1905	CHARACTER(len=1),DIMENSION(1) :: clgrd = (/ 'T' /) ! suffix name
[4148]	1906	CHARACTER(len=256) :: clname ! file name
	1907	CHARACTER(len=256) :: clsuff ! suffix name
[1725]	1908	CHARACTER(len=1) :: cl1 ! 1 character
	1909	CHARACTER(len=6) :: clon,clat ! name of longitude, latitude
	1910	INTEGER :: ji, jj, jg ! loop counters
	1911	INTEGER :: ix, iy ! i-,j- index
	1912	REAL(wp) :: zlon, zlat
	1913	!!----------------------------------------------------------------------
	1914	DO jg = 1, SIZE(clgrd)
	1915	cl1 = clgrd(jg)
	1916	DO ji = 1, SIZE(plon)
	1917	DO jj = 1, SIZE(plat)
	1918	zlon = plon(ji)
	1919	zlat = plat(jj)
	1920	! modifications for RAMA moorings
	1921	IF( zlon == 67. .AND. zlat == 15. ) zlon = 65.
	1922	IF( zlon == 90. .AND. zlat <= -4. ) zlon = 95.
	1923	IF( zlon == 95. .AND. zlat == -4. ) zlat = -5.
	1924	! modifications for PIRATA moorings
	1925	IF( zlon == -38. .AND. zlat == -19. ) zlon = -34.
	1926	IF( zlon == -38. .AND. zlat == -14. ) zlon = -32.
	1927	IF( zlon == -38. .AND. zlat == -8. ) zlon = -30.
	1928	IF( zlon == -38. .AND. zlat == 0. ) zlon = -35.
	1929	IF( zlon == -23. .AND. zlat == 20. ) zlat = 21.
	1930	IF( zlon == -10. .AND. zlat == -14. ) zlat = -10.
	1931	IF( zlon == -10. .AND. zlat == -8. ) zlat = -6.
	1932	IF( zlon == -10. .AND. zlat == 4. ) THEN ; zlon = 0. ; zlat = 0. ; ENDIF
	1933	CALL dom_ngb( zlon, zlat, ix, iy, cl1 )
	1934	IF( zlon >= 0. ) THEN
	1935	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT( zlon), 'e'
	1936	ELSE ; WRITE(clon, '(f5.1,a)') zlon , 'e'
	1937	ENDIF
	1938	ELSE
	1939	IF( zlon == REAL(NINT(zlon), wp) ) THEN ; WRITE(clon, '(i3, a)') NINT(-zlon), 'w'
	1940	ELSE ; WRITE(clon, '(f5.1,a)') -zlon , 'w'
	1941	ENDIF
	1942	ENDIF
	1943	IF( zlat >= 0. ) THEN
	1944	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT( zlat), 'n'
	1945	ELSE ; WRITE(clat, '(f4.1,a)') zlat , 'n'
	1946	ENDIF
	1947	ELSE
	1948	IF( zlat == REAL(NINT(zlat), wp) ) THEN ; WRITE(clat, '(i2, a)') NINT(-zlat), 's'
	1949	ELSE ; WRITE(clat, '(f4.1,a)') -zlat , 's'
	1950	ENDIF
	1951	ENDIF
	1952	clname = TRIM(ADJUSTL(clat))//TRIM(ADJUSTL(clon))
[7646]	1953	CALL iom_set_zoom_domain_attr (TRIM(clname)//cl1, ibegin= ix-1, jbegin= iy-1)
	1954
[4148]	1955	CALL iom_get_file_attr (TRIM(clname)//cl1, name_suffix = clsuff )
	1956	CALL iom_set_file_attr (TRIM(clname)//cl1, name_suffix = TRIM(clsuff)//'_'//TRIM(clname))
	1957	CALL iom_update_file_name(TRIM(clname)//cl1)
[1725]	1958	END DO
	1959	END DO
	1960	END DO
	1961
	1962	END SUBROUTINE set_mooring
	1963
[4148]	1964
	1965	SUBROUTINE iom_update_file_name( cdid )
	1966	!!----------------------------------------------------------------------
	1967	!! * ROUTINE iom_update_file_name *
	1968	!!
	1969	!! ** Purpose :
	1970	!!
	1971	!!----------------------------------------------------------------------
	1972	CHARACTER(LEN=*) , INTENT(in) :: cdid
	1973	!
	1974	CHARACTER(LEN=256) :: clname
	1975	CHARACTER(LEN=20) :: clfreq
	1976	CHARACTER(LEN=20) :: cldate
	1977	INTEGER :: idx
	1978	INTEGER :: jn
	1979	INTEGER :: itrlen
	1980	INTEGER :: iyear, imonth, iday, isec
	1981	REAL(wp) :: zsec
	1982	LOGICAL :: llexist
[7646]	1983	TYPE(xios_duration) :: output_freq
[4148]	1984	!!----------------------------------------------------------------------
	1985
	1986	DO jn = 1,2
	1987
[7646]	1988	output_freq = xios_duration(0,0,0,0,0,0)
	1989	IF( jn == 1 ) CALL iom_get_file_attr( cdid, name = clname, output_freq = output_freq )
[4148]	1990	IF( jn == 2 ) CALL iom_get_file_attr( cdid, name_suffix = clname )
	1991
	1992	IF ( TRIM(clname) /= '' ) THEN
	1993
	1994	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	1995	DO WHILE ( idx /= 0 )
	1996	clname = clname(1:idx-1)//TRIM(cexper)//clname(idx+9:LEN_TRIM(clname))
	1997	idx = INDEX(clname,'@expname@') + INDEX(clname,'@EXPNAME@')
	1998	END DO
	1999
	2000	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
	2001	DO WHILE ( idx /= 0 )
[7646]	2002	IF ( output_freq%timestep /= 0) THEN
	2003	WRITE(clfreq,'(I18,A2)')INT(output_freq%timestep),'ts'
	2004	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7764]	2005	ELSE IF ( output_freq%second /= 0 ) THEN
	2006	WRITE(clfreq,'(I19,A1)')INT(output_freq%second),'s'
	2007	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2008	ELSE IF ( output_freq%minute /= 0 ) THEN
[7768]	2009	WRITE(clfreq,'(I18,A2)')INT(output_freq%minute),'mi'
[7764]	2010	itrlen = LEN_TRIM(ADJUSTL(clfreq))
[7646]	2011	ELSE IF ( output_freq%hour /= 0 ) THEN
	2012	WRITE(clfreq,'(I19,A1)')INT(output_freq%hour),'h'
	2013	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2014	ELSE IF ( output_freq%day /= 0 ) THEN
	2015	WRITE(clfreq,'(I19,A1)')INT(output_freq%day),'d'
	2016	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2017	ELSE IF ( output_freq%month /= 0 ) THEN
	2018	WRITE(clfreq,'(I19,A1)')INT(output_freq%month),'m'
	2019	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2020	ELSE IF ( output_freq%year /= 0 ) THEN
	2021	WRITE(clfreq,'(I19,A1)')INT(output_freq%year),'y'
	2022	itrlen = LEN_TRIM(ADJUSTL(clfreq))
	2023	ELSE
[4148]	2024	CALL ctl_stop('error in the name of file id '//TRIM(cdid), &
	2025	& ' attribute output_freq is undefined -> cannot replace @freq@ in '//TRIM(clname) )
[7646]	2026	ENDIF
	2027	clname = clname(1:idx-1)//TRIM(ADJUSTL(clfreq))//clname(idx+6:LEN_TRIM(clname))
	2028	idx = INDEX(clname,'@freq@') + INDEX(clname,'@FREQ@')
[4148]	2029	END DO
	2030
	2031	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2032	DO WHILE ( idx /= 0 )
[6140]	2033	cldate = iom_sdate( fjulday - rdt / rday )
[4148]	2034	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+11:LEN_TRIM(clname))
	2035	idx = INDEX(clname,'@startdate@') + INDEX(clname,'@STARTDATE@')
	2036	END DO
	2037
	2038	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2039	DO WHILE ( idx /= 0 )
[6140]	2040	cldate = iom_sdate( fjulday - rdt / rday, ldfull = .TRUE. )
[4148]	2041	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+15:LEN_TRIM(clname))
	2042	idx = INDEX(clname,'@startdatefull@') + INDEX(clname,'@STARTDATEFULL@')
	2043	END DO
	2044
	2045	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2046	DO WHILE ( idx /= 0 )
[6140]	2047	cldate = iom_sdate( fjulday + rdt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE. )
[4148]	2048	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+9:LEN_TRIM(clname))
	2049	idx = INDEX(clname,'@enddate@') + INDEX(clname,'@ENDDATE@')
	2050	END DO
	2051
	2052	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2053	DO WHILE ( idx /= 0 )
[6140]	2054	cldate = iom_sdate( fjulday + rdt / rday * REAL( nitend - nit000, wp ), ld24 = .TRUE., ldfull = .TRUE. )
[4148]	2055	clname = clname(1:idx-1)//TRIM(cldate)//clname(idx+13:LEN_TRIM(clname))
	2056	idx = INDEX(clname,'@enddatefull@') + INDEX(clname,'@ENDDATEFULL@')
	2057	END DO
	2058
[5656]	2059	IF( jn == 1 .AND. TRIM(Agrif_CFixed()) /= '0' ) clname = TRIM(Agrif_CFixed())//"_"//TRIM(clname)
[4148]	2060	IF( jn == 1 ) CALL iom_set_file_attr( cdid, name = clname )
	2061	IF( jn == 2 ) CALL iom_set_file_attr( cdid, name_suffix = clname )
	2062
	2063	ENDIF
	2064
	2065	END DO
	2066
	2067	END SUBROUTINE iom_update_file_name
	2068
	2069
	2070	FUNCTION iom_sdate( pjday, ld24, ldfull )
	2071	!!----------------------------------------------------------------------
	2072	!! * ROUTINE iom_sdate *
	2073	!!
	2074	!! ** Purpose : send back the date corresponding to the given julian day
	2075	!!
	2076	!!----------------------------------------------------------------------
	2077	REAL(wp), INTENT(in ) :: pjday ! julian day
	2078	LOGICAL , INTENT(in ), OPTIONAL :: ld24 ! true to force 24:00 instead of 00:00
	2079	LOGICAL , INTENT(in ), OPTIONAL :: ldfull ! true to get the compleate date: yyyymmdd_hh:mm:ss
	2080	!
	2081	CHARACTER(LEN=20) :: iom_sdate
	2082	CHARACTER(LEN=50) :: clfmt ! format used to write the date
	2083	INTEGER :: iyear, imonth, iday, ihour, iminute, isec
	2084	REAL(wp) :: zsec
	2085	LOGICAL :: ll24, llfull
	2086	!
	2087	IF( PRESENT(ld24) ) THEN ; ll24 = ld24
	2088	ELSE ; ll24 = .FALSE.
	2089	ENDIF
	2090
	2091	IF( PRESENT(ldfull) ) THEN ; llfull = ldfull
	2092	ELSE ; llfull = .FALSE.
	2093	ENDIF
	2094
	2095	CALL ju2ymds( pjday, iyear, imonth, iday, zsec )
	2096	isec = NINT(zsec)
	2097
	2098	IF ( ll24 .AND. isec == 0 ) THEN ! 00:00 of the next day -> move to 24:00 of the current day
	2099	CALL ju2ymds( pjday - 1., iyear, imonth, iday, zsec )
	2100	isec = 86400
	2101	ENDIF
	2102
	2103	IF( iyear < 10000 ) THEN ; clfmt = "i4.4,2i2.2" ! format used to write the date
	2104	ELSE ; WRITE(clfmt, "('i',i1,',2i2.2')") INT(LOG10(REAL(iyear,wp))) + 1
	2105	ENDIF
	2106
[5656]	2107	!$AGRIF_DO_NOT_TREAT
	2108	! Should be fixed in the conv
[4148]	2109	IF( llfull ) THEN
	2110	clfmt = TRIM(clfmt)//",'_',i2.2,':',i2.2,':',i2.2"
	2111	ihour = isec / 3600
	2112	isec = MOD(isec, 3600)
	2113	iminute = isec / 60
	2114	isec = MOD(isec, 60)
	2115	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday, ihour, iminute, isec ! date of the end of run
	2116	ELSE
	2117	WRITE(iom_sdate, '('//TRIM(clfmt)//')') iyear, imonth, iday ! date of the end of run
	2118	ENDIF
[5656]	2119	!$AGRIF_END_DO_NOT_TREAT
[4148]	2120
	2121	END FUNCTION iom_sdate
	2122
[1359]	2123	#else
	2124
[4152]	2125
	2126	SUBROUTINE iom_setkt( kt, cdname )
	2127	INTEGER , INTENT(in):: kt
	2128	CHARACTER(LEN=*), INTENT(in) :: cdname
	2129	IF( .FALSE. ) WRITE(numout,*) kt, cdname ! useless test to avoid compilation warnings
[1359]	2130	END SUBROUTINE iom_setkt
	2131
[4152]	2132	SUBROUTINE iom_context_finalize( cdname )
	2133	CHARACTER(LEN=*), INTENT(in) :: cdname
	2134	IF( .FALSE. ) WRITE(numout,*) cdname ! useless test to avoid compilation warnings
	2135	END SUBROUTINE iom_context_finalize
	2136
[1359]	2137	#endif
[4689]	2138
	2139	LOGICAL FUNCTION iom_use( cdname )
	2140	CHARACTER(LEN=*), INTENT(in) :: cdname
	2141	#if defined key_iomput
	2142	iom_use = xios_field_is_active( cdname )
	2143	#else
	2144	iom_use = .FALSE.
	2145	#endif
	2146	END FUNCTION iom_use
[3695]	2147
[544]	2148	!!======================================================================
	2149	END MODULE iom

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