| 1 | !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 2 | !! PISCES (key_pisces) reference namelist (see below for key_pisces_reduced) |
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| 3 | !! 1 - air-sea exchange (nampisext) |
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| 4 | !! 2 - biological parameters (nampisbio) |
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| 5 | !! 3 - parameters for nutrient limitations (nampislim) |
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| 6 | !! 4 - parameters for phytoplankton (nampisprod,nampismort) |
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| 7 | !! 5 - parameters for zooplankton (nampismes,nampiszoo) |
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| 8 | !! 6 - parameters for remineralization (nampisrem) |
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| 9 | !! 7 - parameters for calcite chemistry (nampiscal) |
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| 10 | !! 8 - parameters for inputs deposition (nampissed) |
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| 11 | !! 9 - parameters for Kriest parameterization (nampiskrp, nampiskrs) |
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| 12 | !! 10 - additional 2D/3D diagnostics (nampisdia) |
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| 13 | !! 11 - Damping (nampisdmp) |
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| 14 | !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 15 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 16 | &nampisext ! air-sea exchange |
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| 17 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 18 | ln_co2int = .false. ! read atm pco2 from a file (T) or constant (F) |
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| 19 | atcco2 = 280. ! Constant value atmospheric pCO2 - ln_co2int = F |
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| 20 | clname = 'atcco2.txt' ! Name of atm pCO2 file - ln_co2int = T |
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| 21 | nn_offset = 0 ! Offset model-data start year - ln_co2int = T |
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| 22 | ! ! If your model year is iyy, nn_offset=(years(1)-iyy) |
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| 23 | ! ! then the first atmospheric CO2 record read is at years(1) |
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| 24 | / |
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| 25 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 26 | &nampisatm ! Atmospheric prrssure |
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| 27 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 28 | ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! |
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| 29 | ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! |
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| 30 | sn_patm = 'presatm' , -1 , 'patm' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 31 | cn_dir = './' ! root directory for the location of the dynamical files |
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| 32 | ! |
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| 33 | ln_presatm = .false. ! constant atmopsheric pressure (F) or from a file (T) |
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| 34 | / |
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| 35 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 36 | &nampisbio ! biological parameters |
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| 37 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 38 | nrdttrc = 2 ! time step frequency for biology |
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| 39 | wsbio = 2. ! POC sinking speed |
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| 40 | xkmort = 1.E-8 ! half saturation constant for mortality |
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| 41 | ferat3 = 10.E-6 ! Fe/C in zooplankton |
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| 42 | no3rat3 = 0.167 ! N/C ratio in zooplankton |
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| 43 | po4rat3 = 0.0094 ! P/C ratio in zooplankton |
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| 44 | wsbio2 = 50. ! Big particles sinking speed |
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| 45 | niter1max = 1 ! Maximum number of iterations for POC |
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| 46 | niter2max = 1 ! Maximum number of iterations for GOC |
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| 47 | / |
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| 48 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 49 | &nampislim ! parameters for nutrient limitations |
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| 50 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 51 | concnno3 = 3e-6 ! Nitrate half saturation of nanophytoplankton |
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| 52 | concpno3 = 1e-6 |
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| 53 | concdno3 = 4E-6 ! Phosphate half saturation for diatoms |
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| 54 | concnnh4 = 1.5E-6 ! NH4 half saturation for phyto |
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| 55 | concpnh4 = 3E-7 |
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| 56 | concdnh4 = 2E-6 ! NH4 half saturation for diatoms |
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| 57 | concnpo4 = 3E-6 ! PO4 half saturation for phyto |
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| 58 | concppo4 = 1E-6 |
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| 59 | concdpo4 = 4E-6 ! PO4 half saturation for diatoms |
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| 60 | concnfer = 3E-9 ! Iron half saturation for phyto |
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| 61 | concpfer = 1E-9 |
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| 62 | concdfer = 4E-9 ! Iron half saturation for diatoms |
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| 63 | concbfe = 1.E-11 ! Half-saturation for Fe limitation of Bacteria |
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| 64 | concbnh4 = 1.E-7 ! NH4 half saturation for phyto |
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| 65 | concbno3 = 5.E-7 ! Phosphate half saturation for diatoms |
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| 66 | concbpo4 = 1E-7 ! Phosphate half saturation for bacteria |
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| 67 | xsizedia = 1.E-6 ! Minimum size criteria for diatoms |
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| 68 | xsizephy = 1.E-6 ! Minimum size criteria for phyto |
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| 69 | xsizepic = 1.E-6 |
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| 70 | xsizern = 1.0 ! Size ratio for nanophytoplankton |
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| 71 | xsizerp = 1.0 |
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| 72 | xsizerd = 4.0 ! Size ratio for diatoms |
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| 73 | xksi1 = 2.E-6 ! half saturation constant for Si uptake |
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| 74 | xksi2 = 20E-6 ! half saturation constant for Si/C |
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| 75 | xkdoc = 417.E-6 ! half-saturation constant of DOC remineralization |
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| 76 | qfnopt = 7.E-6 ! Optimal quota of phyto |
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| 77 | qfpopt = 7.E-6 |
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| 78 | qfdopt = 7.E-6 ! Optimal quota of diatoms |
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| 79 | caco3r = 0.4 ! mean rain ratio |
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| 80 | qnnmin = 0.29 |
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| 81 | qnnmax = 1.525 |
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| 82 | qpnmin = 0.28 |
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| 83 | qpnmax = 1.06 |
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| 84 | qnpmin = 0.42 |
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| 85 | qnpmax = 1.525 |
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| 86 | qppmin = 0.25 |
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| 87 | qppmax = 0.7 |
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| 88 | qndmin = 0.25 |
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| 89 | qndmax = 1.525 |
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| 90 | qpdmin = 0.29 |
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| 91 | qpdmax = 1.32 |
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| 92 | qfnmax = 40E-6 |
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| 93 | qfpmax = 40E-6 |
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| 94 | qfdmax = 40E-6 |
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| 95 | / |
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| 96 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 97 | &nampisopt ! parameters for optics |
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| 98 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 99 | ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! |
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| 100 | ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! |
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| 101 | sn_par = 'par.orca' , 24 , 'fr_par' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 102 | cn_dir = './' ! root directory for the location of the dynamical files |
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| 103 | ln_varpar = .true. ! boolean for PAR variable |
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| 104 | parlux = 0.43 ! Fraction of shortwave as PAR |
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| 105 | / |
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| 106 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 107 | &nampisprod ! parameters for phytoplankton growth |
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| 108 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 109 | pislope = 3. ! P-I slope |
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| 110 | pislopep = 4. |
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| 111 | pislope2 = 3. ! P-I slope for diatoms |
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| 112 | xadap = 0. ! Adaptation factor to low light |
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| 113 | excret = 0.05 ! excretion ratio of phytoplankton |
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| 114 | excretp = 0.05 |
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| 115 | excret2 = 0.05 ! excretion ratio of diatoms |
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| 116 | bresp = 0.02 ! Basal respiration rate |
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| 117 | chlcnm = 0.033 ! Minimum Chl/C in nanophytoplankton |
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| 118 | chlcpm = 0.033 |
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| 119 | chlcdm = 0.05 ! Minimum Chl/C in diatoms |
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| 120 | chlcmin = 0.004 ! Maximum Chl/c in phytoplankton |
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| 121 | grosip = 0.131 ! mean Si/C ratio |
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| 122 | / |
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| 123 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 124 | &nampismort ! parameters for phytoplankton sinks |
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| 125 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 126 | wchl = 0.01 ! quadratic mortality of phytoplankton |
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| 127 | wchlp = 0.001 |
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| 128 | wchld = 0.01 ! maximum quadratic mortality of diatoms |
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| 129 | wchldm = 0.02 ! maximum quadratic mortality of diatoms |
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| 130 | mprat = 0.01 ! phytoplankton mortality rate |
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| 131 | mpratp = 0.01 |
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| 132 | mprat2 = 0.01 ! Diatoms mortality rate |
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| 133 | / |
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| 134 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 135 | &nampismes ! parameters for mesozooplankton |
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| 136 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 137 | part2 = 0.75 ! part of calcite not dissolved in mesozoo guts |
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| 138 | grazrat2 = 0.85 ! maximal mesozoo grazing rate |
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| 139 | resrat2 = 0.005 ! exsudation rate of mesozooplankton |
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| 140 | mzrat2 = 0.02 ! mesozooplankton mortality rate |
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| 141 | xpref2d = 1. ! zoo preference for phyto |
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| 142 | xpref2p = 1. ! zoo preference for POC |
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| 143 | xpref2z = 1. ! zoo preference for zoo |
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| 144 | xpref2m = 0.2 ! meso preference for zoo |
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| 145 | xpref2c = 0.3 ! zoo preference for poc |
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| 146 | xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton |
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| 147 | xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton |
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| 148 | xthresh2phy = 1E-8 ! nanophyto feeding threshold for mesozooplankton |
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| 149 | xthresh2mes = 1E-8 ! meso feeding threshold for mesozooplankton |
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| 150 | xthresh2poc = 1E-8 ! poc feeding threshold for mesozooplankton |
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| 151 | xthresh2 = 3E-7 ! Food threshold for grazing |
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| 152 | xkgraz2 = 20.E-6 ! half sturation constant for meso grazing |
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| 153 | epsher2 = 0.5 ! Efficicency of Mesozoo growth |
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| 154 | unass2c = 0.3 ! non assimilated fraction of P by mesozoo |
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| 155 | unass2n = 0.3 ! non assimilated fraction of N by mesozoo |
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| 156 | unass2p = 0.3 ! non assimilated fraction of P by mesozoo |
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| 157 | grazflux = 3.e3 ! flux-feeding rate |
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| 158 | / |
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| 159 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 160 | &nampiszoo ! parameters for microzooplankton |
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| 161 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 162 | part = 0.5 ! part of calcite not dissolved in microzoo gutsa |
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| 163 | grazrat = 2.75 ! maximal zoo grazing rate |
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| 164 | resrat = 0.03 ! exsudation rate of zooplankton |
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| 165 | mzrat = 0.005 ! zooplankton mortality rate |
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| 166 | xprefc = 0.2 ! Microzoo preference for POM |
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| 167 | xprefn = 1. ! Microzoo preference for Nanophyto |
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| 168 | xprefp = 1.5 |
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| 169 | xprefd = 1.0 ! Microzoo preference for Diatoms |
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| 170 | xprefz = 0.3 ! Microzoo preference for microzooplankton |
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| 171 | xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton |
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| 172 | xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton |
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| 173 | xthreshpic = 1.E-8 |
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| 174 | xthreshzoo = 1.E-8 ! Nanophyto feeding threshold for microzooplankton |
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| 175 | xthreshpoc = 1.E-8 ! POC feeding threshold for microzooplankton |
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| 176 | xthresh = 3.E-7 ! Food threshold for feeding |
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| 177 | xkgraz = 20.E-6 ! half sturation constant for grazing |
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| 178 | epsher = 0.5 ! Efficiency of microzoo growth |
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| 179 | unassc = 0.3 ! non assimilated fraction of C by zoo |
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| 180 | unassn = 0.3 ! non assimilated fraction of C by zoo |
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| 181 | unassp = 0.3 ! non assimilated fraction of C by zoo |
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| 182 | / |
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| 183 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 184 | &nampisfer ! parameters for iron chemistry |
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| 185 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 186 | ln_fechem = .false. ! complex iron chemistry ( T/F ) |
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| 187 | ln_ligvar = .false. ! variable ligand concentration |
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| 188 | xlam1 = 0.005 ! scavenging rate of Iron |
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| 189 | xlamdust = 150.0 ! Scavenging rate of dust |
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| 190 | ligand = 0.6E-9 ! Ligands concentration |
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| 191 | / |
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| 192 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 193 | &nampisrem ! parameters for remineralization |
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| 194 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 195 | xremikc = 0.35 ! remineralization rate of DOC |
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| 196 | xremikn = 0.35 ! remineralization rate of DON |
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| 197 | xremikp = 0.35 ! remineralization rate of DOP |
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| 198 | xremipc = 0.025 ! remineralisation rate of POC |
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| 199 | xremipn = 0.03 ! remineralisation rate of PON |
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| 200 | xremipp = 0.035 ! remineralisation rate of POP |
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| 201 | nitrif = 0.05 ! NH4 nitrification rate |
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| 202 | xsirem = 0.003 ! remineralization rate of Si |
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| 203 | xsiremlab = 0.03 ! fast remineralization rate of Si |
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| 204 | xsilab = 0.5 ! Fraction of labile biogenic silica |
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| 205 | oxymin = 1.E-6 ! Half-saturation constant for anoxia |
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| 206 | / |
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| 207 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 208 | &nampiscal ! parameters for Calcite chemistry |
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| 209 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 210 | kdca = 6. ! calcite dissolution rate constant (1/time) |
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| 211 | nca = 1. ! order of dissolution reaction (dimensionless) |
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| 212 | / |
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| 213 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 214 | &nampissbc ! parameters for inputs deposition |
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| 215 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 216 | ! ! file name ! frequency (hours) ! variable ! time interp. ! clim ! 'yearly'/ ! weights ! rotation ! land/sea mask ! |
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| 217 | ! ! ! (if <0 months) ! name ! (logical) ! (T/F) ! 'monthly' ! filename ! pairing ! filename ! |
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| 218 | sn_dust = 'dust.orca' , -1 , 'dust' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 219 | sn_solub = 'solubility.orca' , -12 , 'solubility1' , .false. , .true. , 'yearly' , '' , '' , '' |
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| 220 | sn_riverdic = 'river.orca' , 120 , 'riverdic' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 221 | sn_riverdoc = 'river.orca' , 120 , 'riverdoc' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 222 | sn_riverdin = 'river.orca' , 120 , 'riverdin' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 223 | sn_riverdon = 'river.orca' , 120 , 'riverdon' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 224 | sn_riverdip = 'river.orca' , 120 , 'riverdip' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 225 | sn_riverdop = 'river.orca' , 120 , 'riverdop' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 226 | sn_riverdsi = 'river.orca' , 120 , 'riverdsi' , .true. , .true. , 'yearly' , '' , '' , '' |
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| 227 | sn_ndepo = 'ndeposition.orca', -12 , 'ndep' , .false. , .true. , 'yearly' , '' , '' , '' |
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| 228 | sn_ironsed = 'bathy.orca' , -12 , 'bathy' , .false. , .true. , 'yearly' , '' , '' , '' |
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| 229 | sn_hydrofe = 'hydrofe.orca' , -12 , 'epsdb' , .false. , .true. , 'yearly' , '' , '' , '' |
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| 230 | ! |
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| 231 | cn_dir = './' ! root directory for the location of the dynamical files |
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| 232 | ln_dust = .true. ! boolean for dust input from the atmosphere |
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| 233 | ln_solub = .true. ! boolean for variable solubility of atm. Iron |
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| 234 | ln_river = .true. ! boolean for river input of nutrients |
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| 235 | ln_ndepo = .true. ! boolean for atmospheric deposition of N |
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| 236 | ln_ironsed = .true. ! boolean for Fe input from sediments |
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| 237 | ln_ironice = .true. ! boolean for Fe input from sea ice |
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| 238 | ln_hydrofe = .true. ! boolean for from hydrothermal vents |
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| 239 | sedfeinput = 1.5e-9 ! Coastal release of Iron |
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| 240 | dustsolub = 0.02 ! Solubility of the dusta |
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| 241 | mfrac = 0.035 ! Fe mineral fraction of dust |
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| 242 | wdust = 2.0 ! Dust sinking speed |
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| 243 | icefeinput = 15.e-9 ! Iron concentration in sea ice |
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| 244 | nitrfix = 1.e-7 ! Nitrogen fixation rate |
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| 245 | diazolight = 30. ! Diazotrophs sensitivity to light (W/m2) |
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| 246 | concfediaz = 1.e-10 ! Diazotrophs half-saturation Cste for Iron |
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| 247 | hratio = 1.e+7 ! Fe to 3He ratio assumed for vent iron supply |
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| 248 | / |
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| 249 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 250 | &nampiskrp ! Kriest parameterization : parameters "key_kriest" |
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| 251 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 252 | xkr_eta = 1.17 ! Sinking exponent |
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| 253 | xkr_zeta = 2.28 ! N content exponent |
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| 254 | xkr_ncontent = 5.7E-6 ! N content factor |
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| 255 | xkr_mass_min = 0.0002 ! Minimum mass for Aggregates |
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| 256 | xkr_mass_max = 1. ! Maximum mass for Aggregates |
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| 257 | / |
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| 258 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 259 | &nampiskrs ! Kriest parameterization : size classes "key_kriest" |
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| 260 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 261 | xkr_sfact = 942. ! Sinking factor |
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| 262 | xkr_stick = 0.5 ! Stickiness |
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| 263 | xkr_nnano = 2.337 ! Nbr of cell in nano size class |
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| 264 | xkr_ndiat = 3.718 ! Nbr of cell in diatoms size class |
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| 265 | xkr_nmeso = 7.147 ! Nbr of cell in mesozoo size class |
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| 266 | xkr_naggr = 9.877 ! Nbr of cell in aggregates size class |
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| 267 | / |
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| 268 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 269 | &nampisdia ! additional 2D/3D tracers diagnostics |
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| 270 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 271 | ! ! name ! title of the field ! units ! |
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| 272 | ! ! ! ! ! |
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| 273 | pisdia2d(1) = 'Cflx ' , 'DIC flux ', 'molC/m2/s ' |
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| 274 | pisdia2d(2) = 'Oflx ' , 'Oxygen flux ', 'molC/m2/s ' |
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| 275 | pisdia2d(3) = 'Kg ' , 'Gas transfer ', 'mol/m2/s/uatm' |
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| 276 | pisdia2d(4) = 'Delc ' , 'Delta CO2 ', 'uatm ' |
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| 277 | pisdia2d(5) = 'PMO ' , 'POC export ', 'molC/m2/s ' |
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| 278 | pisdia2d(6) = 'PMO2 ' , 'GOC export ', 'molC/m2/s ' |
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| 279 | pisdia2d(7) = 'ExpFe1 ' , 'Nano iron export ', 'molFe/m2/s ' |
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| 280 | pisdia2d(8) = 'ExpFe2 ' , 'Diatoms iron export ', 'molFe/m2/s ' |
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| 281 | pisdia2d(9) = 'ExpSi ' , 'Silicate export ', 'molSi/m2/s ' |
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| 282 | pisdia2d(10) = 'ExpCaCO3 ' , 'Calcite export ', 'molC/m2/s ' |
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| 283 | pisdia2d(11) = 'heup ' , 'euphotic layer depth ', 'm ' |
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| 284 | pisdia2d(12) = 'Fedep ' , 'Iron dep ', 'molFe/m2/s ' |
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| 285 | pisdia2d(13) = 'Nfix ' , 'Nitrogen Fixation ', 'molN/m2/s ' |
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| 286 | pisdia3d(1) = 'PH ' , 'PH ', '- ' |
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| 287 | pisdia3d(2) = 'CO3 ' , 'Bicarbonates ', 'mol/l ' |
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| 288 | pisdia3d(3) = 'CO3sat ' , 'CO3 saturation ', 'mol/l ' |
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| 289 | pisdia3d(4) = 'PAR ' , 'light penetration ', 'W/m2 ' |
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| 290 | pisdia3d(5) = 'PPPHY ' , 'Primary production of nanophyto ', 'molC/m3/s ' |
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| 291 | pisdia3d(6) = 'PPPHY2 ' , 'Primary production of diatoms ', 'molC/m3/s ' |
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| 292 | pisdia3d(7) = 'PPNEWN ' , 'New Primary production of nano ', 'molC/m3/s ' |
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| 293 | pisdia3d(8) = 'PPNEWD ' , 'New Primary production of diat ', 'molC/m3/s ' |
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| 294 | pisdia3d(9) = 'PBSi ' , 'Primary production of Si diatoms ', 'molSi/m3/s ' |
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| 295 | pisdia3d(10) = 'PFeN ' , 'Primary production of nano iron ', 'molFe/m3/s ' |
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| 296 | pisdia3d(11) = 'PFeD ' , 'Primary production of diatoms iron', 'molFe/m3/s ' |
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| 297 | / |
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| 298 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 299 | &nampisdmp ! Damping |
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| 300 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 301 | ln_pisdmp = .true. ! Relaxation fo some tracers to a mean value |
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| 302 | nn_pisdmp = 3650 ! Frequency of Relaxation |
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| 303 | / |
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| 304 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 305 | &nampismass ! Mass conservation |
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| 306 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 307 | ln_check_mass = .false. ! Check mass conservation |
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| 308 | / |
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| 309 | !!>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 310 | !! PISCES reduced (key_pisces_reduced, ex LOBSTER) : namelists |
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| 311 | !! 1 - biological parameters for phytoplankton (namlobphy) |
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| 312 | !! 2 - biological parameters for nutrients (namlobnut) |
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| 313 | !! 3 - biological parameters for zooplankton (namlobzoo) |
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| 314 | !! 4 - biological parameters for detritus (namlobdet) |
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| 315 | !! 5 - biological parameters for DOM (namlobdom) |
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| 316 | !! 6 - parameters from aphotic layers to sediment (namlobsed) |
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| 317 | !! 7 - general coefficients (namlobrat) |
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| 318 | !! 8 - optical parameters (namlobopt) |
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| 319 | |
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| 320 | !! 10 - biological diagnostics trends (namlobdbi) |
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| 321 | !>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> |
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| 322 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 323 | &namlobphy ! biological parameters for phytoplankton |
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| 324 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 325 | tmumax = 1.21e-5 ! maximal phytoplankton growth rate [s-1] |
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| 326 | rgamma = 0.05 ! phytoplankton exudation fraction [%] |
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| 327 | fphylab = 0.75 ! NH4 fraction of phytoplankton exsudation |
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| 328 | tmminp = 5.8e-7 ! minimal phytoplancton mortality rate [0.05/86400 s-1=20 days] |
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| 329 | aki = 33. ! light photosynthesis half saturation constant[W/m2] |
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| 330 | / |
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| 331 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 332 | &namlobnut ! biological parameters for nutrients |
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| 333 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 334 | akno3 = 0.7 ! nitrate limitation half-saturation value [mmol/m3] |
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| 335 | aknh4 = 0.001 ! ammonium limitation half-saturation value [mmol/m3] |
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| 336 | taunn = 5.80e-7 ! nitrification rate [s-1] |
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| 337 | psinut = 3. ! inhibition of nitrate uptake by ammonium |
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| 338 | / |
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| 339 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 340 | &namlobzoo ! biological parameters for zooplankton |
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| 341 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 342 | rppz = 0.8 ! zooplankton nominal preference for phytoplancton food [%] |
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| 343 | taus = 9.26E-6 ! specific zooplankton maximal grazing rate [s-1] |
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| 344 | ! ! 0.75/86400 s-1=8.680555E-6 1/86400 = 1.15e-5 |
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| 345 | aks = 1. ! half-saturation constant for total zooplankton grazing [mmolN.m-3] |
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| 346 | rpnaz = 0.3 ! non-assimilated phytoplankton by zooplancton [%] |
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| 347 | rdnaz = 0.3 ! non-assimilated detritus by zooplankton [%] |
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| 348 | tauzn = 8.1e-7 ! zooplancton specific excretion rate [0.1/86400 s-1=10 days] |
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| 349 | fzoolab = 0.5 ! NH4 fraction of zooplankton excretion |
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| 350 | fdbod = 0.5 ! zooplankton mortality fraction that goes to detritus |
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| 351 | tmminz = 2.31e-6 ! minimal zooplankton mortality rate [(mmolN/m3)-1 d-1] |
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| 352 | / |
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| 353 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 354 | &namlobdet ! biological parameters for detritus |
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| 355 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 356 | taudn = 5.80e-7 ! detritus breakdown rate [0.1/86400 s-1=10 days] |
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| 357 | fdetlab = 0. ! NH4 fraction of detritus dissolution |
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| 358 | / |
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| 359 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 360 | &namlobdom ! biological parameters for DOM |
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| 361 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 362 | taudomn = 6.43e-8 ! DOM breakdown rate [s-1] |
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| 363 | ! ! slow remineralization rate of semi-labile dom to nh4 (1 month) |
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| 364 | / |
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| 365 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 366 | &namlobsed ! parameters from aphotic layers to sediment |
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| 367 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 368 | sedlam = 3.86e-7 ! time coefficient of POC remineralization in sediments [s-1] |
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| 369 | sedlostpoc = 0. ! mass of POC lost in sediments |
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| 370 | vsed = 3.47e-5 ! detritus sedimentation speed [m/s] |
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| 371 | xhr = -0.858 ! coeff for martin''s remineralisation profile |
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| 372 | / |
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| 373 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 374 | &namlobrat ! general coefficients |
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| 375 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 376 | rcchl = 60. ! Carbone/Chlorophyl ratio [mgC.mgChla-1] |
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| 377 | redf = 6.56 ! redfield ratio (C:N) for phyto |
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| 378 | reddom = 6.56 ! redfield ratio (C:N) for DOM |
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| 379 | / |
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| 380 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 381 | &namlobopt ! optical parameters |
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| 382 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 383 | xkg0 = 0.0232 ! green absorption coefficient of water |
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| 384 | xkr0 = 0.225 ! red absorption coefficent of water |
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| 385 | xkgp = 0.074 ! green absorption coefficient of chl |
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| 386 | xkrp = 0.037 ! red absorption coefficient of chl |
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| 387 | xlg = 0.674 ! green chl exposant for absorption |
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| 388 | xlr = 0.629 ! red chl exposant for absorption |
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| 389 | rpig = 0.7 ! chla/chla+pheo ratio |
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| 390 | / |
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| 391 | !''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''''' |
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| 392 | &nampisdbi ! biological diagnostics trends |
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| 393 | !,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, |
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| 394 | ! ! 2D bio diagnostics units : mmole/m2/s ("key_trdmld_trc") |
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| 395 | ! ! name ! title of the field ! units ! |
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| 396 | pisdiabio(1) = 'NO3PHY' , 'Flux from NO3 to PHY ', 'mmole/m3/s' |
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| 397 | pisdiabio(2) = 'NH4PHY' , 'Flux from NH4 to PHY ', 'mmole/m3/s' |
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| 398 | pisdiabio(3) = 'PHYNH4' , 'Flux from PHY to NH4 ', 'mmole/m3/s' |
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| 399 | pisdiabio(4) = 'PHYDOM' , 'Flux from PHY to DOM ', 'mmole/m3/s' |
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| 400 | pisdiabio(5) = 'PHYZOO' , 'Flux from PHY to ZOO ', 'mmole/m3/s' |
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| 401 | pisdiabio(6) = 'PHYDET' , 'Flux from PHY to DET ', 'mmole/m3/s' |
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| 402 | pisdiabio(7) = 'DETZOO' , 'Flux from DET to ZOO ', 'mmole/m3/s' |
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| 403 | pisdiabio(8) = 'DETSED' , 'Flux from DET to SED ', 'mmole/m3/s' |
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| 404 | pisdiabio(9) = 'ZOODET' , 'Flux from ZOO to DET ', 'mmole/m3/s' |
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| 405 | pisdiabio(10) = 'ZOOBOD' , 'Zooplankton closure ', 'mmole/m3/s' |
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| 406 | pisdiabio(11) = 'ZOONH4' , 'Flux from ZOO to NH4 ', 'mmole/m3/s' |
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| 407 | pisdiabio(12) = 'ZOODOM' , 'Flux from ZOO to DOM ', 'mmole/m3/s' |
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| 408 | pisdiabio(13) = 'NH4NO3' , 'Flux from NH4 to NO3 ', 'mmole/m3/s' |
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| 409 | pisdiabio(14) = 'DOMNH4' , 'Flux from DOM to NH4 ', 'mmole/m3/s' |
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| 410 | pisdiabio(15) = 'DETNH4' , 'Flux from DET to NH4 ', 'mmole/m3/s' |
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| 411 | pisdiabio(16) = 'DETDOM' , 'Flux from DET to DOM ', 'mmole/m3/s' |
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| 412 | pisdiabio(17) = 'SEDNO3' , 'NO3 remineralization from SED', 'mmole/m3/s' |
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| 413 | / |
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