| 1 | MODULE trcbio |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE trcbio *** |
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| 4 | !! TOP : LOBSTER |
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| 5 | !!====================================================================== |
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| 6 | !! History : - ! 1999-07 (M. Levy) Original code |
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| 7 | !! - ! 2000-12 (E. Kestenare) assign a parameter to name individual tracers |
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| 8 | !! - ! 2001-03 (M. Levy) LNO3 + dia2d |
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| 9 | !! 2.0 ! 2007-12 (C. Deltel, G. Madec) F90 |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | #if defined key_lobster |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | !! 'key_lobster' LOBSTER bio-model |
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| 14 | !!---------------------------------------------------------------------- |
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| 15 | !! trc_bio : |
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| 16 | !!---------------------------------------------------------------------- |
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| 17 | USE oce_trc ! |
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| 18 | USE trc ! |
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| 19 | USE sms_lobster ! |
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| 20 | USE lbclnk ! |
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| 21 | USE prtctl_trc ! Print control for debbuging |
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| 22 | USE trdmld_trc |
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| 23 | USE trdmld_trc_oce |
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| 24 | USE iom |
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| 25 | |
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| 26 | IMPLICIT NONE |
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| 27 | PRIVATE |
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| 28 | |
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| 29 | PUBLIC trc_bio ! called in ??? |
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| 30 | |
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| 31 | !!* Substitution |
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| 32 | # include "top_substitute.h90" |
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| 33 | !!---------------------------------------------------------------------- |
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| 34 | !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) |
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| 35 | !! $Id$ |
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| 36 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
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| 37 | !!---------------------------------------------------------------------- |
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| 38 | |
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| 39 | CONTAINS |
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| 40 | |
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| 41 | SUBROUTINE trc_bio( kt ) |
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| 42 | !!--------------------------------------------------------------------- |
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| 43 | !! *** ROUTINE trc_bio *** |
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| 44 | !! |
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| 45 | !! ** Purpose : compute the now trend due to biogeochemical processes |
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| 46 | !! and add it to the general trend of passive tracers equations |
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| 47 | !! |
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| 48 | !! ** Method : each now biological flux is calculated in function of now |
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| 49 | !! concentrations of tracers. |
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| 50 | !! depending on the tracer, these fluxes are sources or sinks. |
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| 51 | !! the total of the sources and sinks for each tracer |
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| 52 | !! is added to the general trend. |
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| 53 | !! |
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| 54 | !! tra = tra + zf...tra - zftra... |
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| 55 | !! | | |
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| 56 | !! | | |
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| 57 | !! source sink |
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| 58 | !! |
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| 59 | !! IF 'key_trc_diabio' defined , the biogeochemical trends |
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| 60 | !! for passive tracers are saved for futher diagnostics. |
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| 61 | !!--------------------------------------------------------------------- |
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| 62 | INTEGER, INTENT( in ) :: kt ! ocean time-step index |
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| 63 | !! |
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| 64 | INTEGER :: ji, jj, jk, jl |
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| 65 | REAL(wp) :: zdet, zzoo, zphy, zno3, znh4, zdom ! now concentrations |
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| 66 | REAL(wp) :: zlno3, zlnh4, zle, zlt ! limitation terms for phyto |
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| 67 | REAL(wp) :: zno3phy, znh4phy, zphynh4, zphydom |
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| 68 | REAL(wp) :: zphydet, zphyzoo, zdetzoo |
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| 69 | REAL(wp) :: zzoonh4, zzoodom, zzoodet, zdetnh4, zdetdom |
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| 70 | REAL(wp) :: znh4no3, zdomnh4, zppz, zpdz, zpppz, zppdz, zfood |
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| 71 | REAL(wp) :: zfilpz, zfildz, zphya, zzooa, zno3a |
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| 72 | REAL(wp) :: znh4a, zdeta, zdoma, zzoobod, zboddet, zdomaju |
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| 73 | #if defined key_trc_diaadd |
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| 74 | REAL(wp) :: ze3t |
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| 75 | #endif |
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| 76 | #if defined key_trc_diaadd && defined key_iomput |
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| 77 | REAL(wp), DIMENSION(jpi,jpj,17) :: zw2d |
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| 78 | # if defined key_trc_dia3d |
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| 79 | REAL(wp), DIMENSION(jpi,jpj,jpk,3) :: zw3d |
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| 80 | # endif |
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| 81 | #endif |
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| 82 | REAL(wp), DIMENSION(:,:,:,:), ALLOCATABLE :: ztrbio |
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| 83 | CHARACTER (len=25) :: charout |
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| 84 | !!--------------------------------------------------------------------- |
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| 85 | |
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| 86 | IF( kt == nit000 ) THEN |
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| 87 | IF(lwp) WRITE(numout,*) |
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| 88 | IF(lwp) WRITE(numout,*) ' trc_bio: LOBSTER bio-model' |
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| 89 | IF(lwp) WRITE(numout,*) ' ~~~~~~~' |
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| 90 | ENDIF |
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| 91 | |
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| 92 | fbod(:,:) = 0.e0 |
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| 93 | #if defined key_trc_diaadd && ! defined key_iomput |
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| 94 | DO jl = jp_lob0_2d, jp_lob1_2d |
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| 95 | trc2d(:,:,jl) = 0.e0 |
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| 96 | END DO |
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| 97 | #endif |
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| 98 | #if defined key_trc_diaadd && defined key_iomput |
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| 99 | zw2d(:,:,:) = 0.e0 |
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| 100 | # if defined key_trc_dia3d |
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| 101 | zw3d(:,:,:,:) = 0.e0 |
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| 102 | # endif |
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| 103 | #endif |
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| 104 | |
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| 105 | IF( l_trdtrc )THEN |
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| 106 | ALLOCATE( ztrbio(jpi,jpj,jpk,jp_lobster_trd) ) |
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| 107 | ztrbio(:,:,:,:) = 0. |
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| 108 | ENDIF |
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| 109 | |
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| 110 | ! ! -------------------------- ! |
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| 111 | DO jk = 1, jpkbm1 ! Upper ocean (bio-layers) ! |
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| 112 | ! ! -------------------------- ! |
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| 113 | DO jj = 2, jpjm1 |
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| 114 | DO ji = fs_2, fs_jpim1 |
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| 115 | ! trophic variables( det, zoo, phy, no3, nh4, dom) |
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| 116 | ! ------------------------------------------------ |
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| 117 | |
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| 118 | ! negative trophic variables DO not contribute to the fluxes |
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| 119 | zdet = MAX( 0.e0, trn(ji,jj,jk,jpdet) ) |
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| 120 | zzoo = MAX( 0.e0, trn(ji,jj,jk,jpzoo) ) |
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| 121 | zphy = MAX( 0.e0, trn(ji,jj,jk,jpphy) ) |
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| 122 | zno3 = MAX( 0.e0, trn(ji,jj,jk,jpno3) ) |
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| 123 | znh4 = MAX( 0.e0, trn(ji,jj,jk,jpnh4) ) |
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| 124 | zdom = MAX( 0.e0, trn(ji,jj,jk,jpdom) ) |
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| 125 | |
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| 126 | ! Limitations |
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| 127 | zlt = 1. |
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| 128 | zle = 1. - EXP( -xpar(ji,jj,jk) / aki / zlt ) |
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| 129 | ! psinut,akno3,aknh4 added by asklod AS Kremeur 2005-03 |
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| 130 | zlno3 = zno3 * EXP( -psinut * znh4 ) / ( akno3 + zno3 ) |
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| 131 | zlnh4 = znh4 / (znh4+aknh4) |
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| 132 | |
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| 133 | ! sinks and sources |
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| 134 | ! phytoplankton production and exsudation |
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| 135 | zno3phy = tmumax * zle * zlt * zlno3 * zphy |
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| 136 | znh4phy = tmumax * zle * zlt * zlnh4 * zphy |
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| 137 | |
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| 138 | ! fphylab added by asklod AS Kremeur 2005-03 |
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| 139 | zphydom = rgamma * (1 - fphylab) * (zno3phy + znh4phy) |
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| 140 | zphynh4 = rgamma * fphylab * (zno3phy + znh4phy) |
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| 141 | |
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| 142 | ! zooplankton production |
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| 143 | ! preferences |
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| 144 | zppz = rppz |
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| 145 | zpdz = 1. - rppz |
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| 146 | zpppz = ( zppz * zphy ) / ( ( zppz * zphy + zpdz * zdet ) + 1.e-13 ) |
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| 147 | zppdz = ( zpdz * zdet ) / ( ( zppz * zphy + zpdz * zdet ) + 1.e-13 ) |
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| 148 | zfood = zpppz * zphy + zppdz * zdet |
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| 149 | ! filtration |
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| 150 | zfilpz = taus * zpppz / (aks + zfood) |
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| 151 | zfildz = taus * zppdz / (aks + zfood) |
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| 152 | ! grazing |
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| 153 | zphyzoo = zfilpz * zphy * zzoo |
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| 154 | zdetzoo = zfildz * zdet * zzoo |
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| 155 | |
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| 156 | ! fecal pellets production |
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| 157 | zzoodet = rpnaz * zphyzoo + rdnaz * zdetzoo |
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| 158 | |
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| 159 | ! zooplankton liquide excretion |
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| 160 | zzoonh4 = tauzn * fzoolab * zzoo |
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| 161 | zzoodom = tauzn * (1 - fzoolab) * zzoo |
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| 162 | |
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| 163 | ! mortality |
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| 164 | ! phytoplankton mortality |
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| 165 | zphydet = tmminp * zphy |
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| 166 | |
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| 167 | ! zooplankton mortality |
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| 168 | ! closure : flux fbod is redistributed below level jpkbio |
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| 169 | zzoobod = tmminz * zzoo * zzoo |
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| 170 | fbod(ji,jj) = fbod(ji,jj) + (1-fdbod) * zzoobod * fse3t(ji,jj,jk) |
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| 171 | zboddet = fdbod * zzoobod |
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| 172 | |
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| 173 | ! detritus and dom breakdown |
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| 174 | zdetnh4 = taudn * fdetlab * zdet |
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| 175 | zdetdom = taudn * (1 - fdetlab) * zdet |
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| 176 | |
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| 177 | zdomnh4 = taudomn * zdom |
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| 178 | |
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| 179 | ! flux added to express how the excess of nitrogen from |
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| 180 | ! PHY, ZOO and DET to DOM goes directly to NH4 (flux of ajustment) |
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| 181 | zdomaju = (1 - redf/reddom) * (zphydom + zzoodom + zdetdom) |
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| 182 | |
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| 183 | ! Nitrification |
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| 184 | znh4no3 = taunn * znh4 |
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| 185 | |
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| 186 | ! determination of trends |
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| 187 | ! total trend for each biological tracer |
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| 188 | zphya = zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet |
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| 189 | zzooa = zphyzoo + zdetzoo - zzoodet - zzoodom - zzoonh4 - zzoobod |
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| 190 | zno3a = - zno3phy + znh4no3 |
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| 191 | znh4a = - znh4phy - znh4no3 + zphynh4 + zzoonh4 + zdomnh4 + zdetnh4 + zdomaju |
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| 192 | zdeta = zphydet + zzoodet - zdetzoo - zdetnh4 - zdetdom + zboddet |
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| 193 | zdoma = zphydom + zzoodom + zdetdom - zdomnh4 - zdomaju |
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| 194 | |
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| 195 | ! tracer flux at totox-point added to the general trend |
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| 196 | tra(ji,jj,jk,jpdet) = tra(ji,jj,jk,jpdet) + zdeta |
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| 197 | tra(ji,jj,jk,jpzoo) = tra(ji,jj,jk,jpzoo) + zzooa |
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| 198 | tra(ji,jj,jk,jpphy) = tra(ji,jj,jk,jpphy) + zphya |
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| 199 | tra(ji,jj,jk,jpno3) = tra(ji,jj,jk,jpno3) + zno3a |
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| 200 | tra(ji,jj,jk,jpnh4) = tra(ji,jj,jk,jpnh4) + znh4a |
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| 201 | tra(ji,jj,jk,jpdom) = tra(ji,jj,jk,jpdom) + zdoma |
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| 202 | |
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| 203 | #if defined key_trc_diabio |
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| 204 | trbio(ji,jj,jk,jp_lob0_trd ) = zno3phy |
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| 205 | trbio(ji,jj,jk,jp_lob0_trd + 1) = znh4phy |
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| 206 | trbio(ji,jj,jk,jp_lob0_trd + 2) = zphynh4 |
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| 207 | trbio(ji,jj,jk,jp_lob0_trd + 3) = zphydom |
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| 208 | trbio(ji,jj,jk,jp_lob0_trd + 4) = zphyzoo |
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| 209 | trbio(ji,jj,jk,jp_lob0_trd + 5) = zphydet |
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| 210 | trbio(ji,jj,jk,jp_lob0_trd + 6) = zdetzoo |
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| 211 | trbio(ji,jj,jk,jp_lob0_trd + 8) = zzoodet |
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| 212 | trbio(ji,jj,jk,jp_lob0_trd + 9) = zzoobod |
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| 213 | trbio(ji,jj,jk,jp_lob0_trd + 10) = zzoonh4 |
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| 214 | trbio(ji,jj,jk,jp_lob0_trd + 11) = zzoodom |
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| 215 | trbio(ji,jj,jk,jp_lob0_trd + 12) = znh4no3 |
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| 216 | trbio(ji,jj,jk,jp_lob0_trd + 13) = zdomnh4 |
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| 217 | trbio(ji,jj,jk,jp_lob0_trd + 14) = zdetnh4 |
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| 218 | trbio(ji,jj,jk,jp_lob0_trd + 15) = zdetdom |
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| 219 | #endif |
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| 220 | IF( l_trdtrc ) THEN |
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| 221 | ztrbio(ji,jj,jk,jp_lob0_trd ) = zno3phy |
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| 222 | ztrbio(ji,jj,jk,jp_lob0_trd + 1) = znh4phy |
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| 223 | ztrbio(ji,jj,jk,jp_lob0_trd + 2) = zphynh4 |
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| 224 | ztrbio(ji,jj,jk,jp_lob0_trd + 3) = zphydom |
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| 225 | ztrbio(ji,jj,jk,jp_lob0_trd + 4) = zphyzoo |
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| 226 | ztrbio(ji,jj,jk,jp_lob0_trd + 5) = zphydet |
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| 227 | ztrbio(ji,jj,jk,jp_lob0_trd + 6) = zdetzoo |
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| 228 | ! trend number 8 in trcsed |
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| 229 | ztrbio(ji,jj,jk,jp_lob0_trd + 8) = zzoodet |
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| 230 | ztrbio(ji,jj,jk,jp_lob0_trd + 9) = zzoobod |
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| 231 | ztrbio(ji,jj,jk,jp_lob0_trd + 10) = zzoonh4 |
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| 232 | ztrbio(ji,jj,jk,jp_lob0_trd + 11) = zzoodom |
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| 233 | ztrbio(ji,jj,jk,jp_lob0_trd + 12) = znh4no3 |
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| 234 | ztrbio(ji,jj,jk,jp_lob0_trd + 13) = zdomnh4 |
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| 235 | ztrbio(ji,jj,jk,jp_lob0_trd + 14) = zdetnh4 |
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| 236 | ztrbio(ji,jj,jk,jp_lob0_trd + 15) = zdetdom |
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| 237 | ! trend number 17 in trcexp |
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| 238 | ENDIF |
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| 239 | |
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| 240 | #if defined key_trc_diaadd |
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| 241 | ! convert fluxes in per day |
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| 242 | ze3t = fse3t(ji,jj,jk) * 86400. |
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| 243 | #if ! defined key_iomput |
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| 244 | trc2d(ji,jj,jp_lob0_2d ) = trc2d(ji,jj, jp_lob0_2d ) + zno3phy * ze3t |
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| 245 | trc2d(ji,jj,jp_lob0_2d + 1) = trc2d(ji,jj, jp_lob0_2d + 1) + znh4phy * ze3t |
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| 246 | trc2d(ji,jj,jp_lob0_2d + 2) = trc2d(ji,jj, jp_lob0_2d + 2) + zphydom * ze3t |
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| 247 | trc2d(ji,jj,jp_lob0_2d + 3) = trc2d(ji,jj, jp_lob0_2d + 3) + zphynh4 * ze3t |
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| 248 | trc2d(ji,jj,jp_lob0_2d + 4) = trc2d(ji,jj, jp_lob0_2d + 4) + zphyzoo * ze3t |
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| 249 | trc2d(ji,jj,jp_lob0_2d + 5) = trc2d(ji,jj, jp_lob0_2d + 5) + zphydet * ze3t |
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| 250 | trc2d(ji,jj,jp_lob0_2d + 6) = trc2d(ji,jj, jp_lob0_2d + 6) + zdetzoo * ze3t |
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| 251 | ! trend number 8 is in trcsed.F |
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| 252 | trc2d(ji,jj,jp_lob0_2d + 8) = trc2d(ji,jj,jp_lob0_2d + 8) + zzoodet * ze3t |
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| 253 | trc2d(ji,jj,jp_lob0_2d + 9) = trc2d(ji,jj,jp_lob0_2d + 9) + zzoobod * ze3t |
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| 254 | trc2d(ji,jj,jp_lob0_2d + 10) = trc2d(ji,jj,jp_lob0_2d + 10) + zzoonh4 * ze3t |
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| 255 | trc2d(ji,jj,jp_lob0_2d + 11) = trc2d(ji,jj,jp_lob0_2d + 11) + zzoodom * ze3t |
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| 256 | trc2d(ji,jj,jp_lob0_2d + 12) = trc2d(ji,jj,jp_lob0_2d + 12) + znh4no3 * ze3t |
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| 257 | trc2d(ji,jj,jp_lob0_2d + 13) = trc2d(ji,jj,jp_lob0_2d + 13) + zdomnh4 * ze3t |
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| 258 | trc2d(ji,jj,jp_lob0_2d + 14) = trc2d(ji,jj,jp_lob0_2d + 14) + zdetnh4 * ze3t |
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| 259 | trc2d(ji,jj,jp_lob0_2d + 15) = trc2d(ji,jj,jp_lob0_2d + 15) + ( zno3phy + znh4phy - zphynh4 & |
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| 260 | & - zphydom - zphyzoo - zphydet ) * ze3t |
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| 261 | trc2d(ji,jj,jp_lob0_2d + 16) = trc2d(ji,jj,jp_lob0_2d + 16) + ( zphyzoo + zdetzoo - zzoodet & |
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| 262 | & - zzoobod - zzoonh4 - zzoodom ) * ze3t |
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| 263 | trc2d(ji,jj,jp_lob0_2d + 17) = trc2d(ji,jj,jp_lob0_2d + 17) + zdetdom * ze3t |
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| 264 | ! trend number 19 is in trcexp.F |
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| 265 | #else |
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| 266 | zw2d(ji,jj,1) = zw2d(ji,jj,1) + zno3phy * ze3t |
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| 267 | zw2d(ji,jj,2) = zw2d(ji,jj,2) + znh4phy * ze3t |
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| 268 | zw2d(ji,jj,3) = zw2d(ji,jj,3) + zphydom * ze3t |
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| 269 | zw2d(ji,jj,4) = zw2d(ji,jj,4) + zphynh4 * ze3t |
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| 270 | zw2d(ji,jj,5) = zw2d(ji,jj,5) + zphyzoo * ze3t |
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| 271 | zw2d(ji,jj,6) = zw2d(ji,jj,6) + zphydet * ze3t |
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| 272 | zw2d(ji,jj,7) = zw2d(ji,jj,7) + zdetzoo * ze3t |
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| 273 | zw2d(ji,jj,8) = zw2d(ji,jj,8) + zzoodet * ze3t |
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| 274 | zw2d(ji,jj,9) = zw2d(ji,jj,9) + zzoobod * ze3t |
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| 275 | zw2d(ji,jj,10) = zw2d(ji,jj,10) + zzoonh4 * ze3t |
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| 276 | zw2d(ji,jj,11) = zw2d(ji,jj,11) + zzoodom * ze3t |
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| 277 | zw2d(ji,jj,12) = zw2d(ji,jj,12) + znh4no3 * ze3t |
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| 278 | zw2d(ji,jj,13) = zw2d(ji,jj,13) + zdomnh4 * ze3t |
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| 279 | zw2d(ji,jj,14) = zw2d(ji,jj,14) + zdetnh4 * ze3t |
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| 280 | zw2d(ji,jj,15) = zw2d(ji,jj,15) + ( zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet ) * ze3t |
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| 281 | zw2d(ji,jj,16) = zw2d(ji,jj,16) + ( zphyzoo + zdetzoo - zzoodet - zzoobod - zzoonh4 - zzoodom ) * ze3t |
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| 282 | zw2d(ji,jj,17) = zw2d(ji,jj,17) + zdetdom * ze3t |
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| 283 | #endif |
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| 284 | #if defined key_trc_dia3d |
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| 285 | # if ! defined key_iomput |
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| 286 | trc3d(ji,jj,jk,jp_lob0_3d ) = zno3phy * 86400 |
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| 287 | trc3d(ji,jj,jk,jp_lob0_3d + 1) = znh4phy * 86400 |
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| 288 | trc3d(ji,jj,jk,jp_lob0_3d + 2) = znh4no3 * 86400 |
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| 289 | # else |
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| 290 | zw3d(ji,jj,jk,1) = zno3phy * 86400 |
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| 291 | zw3d(ji,jj,jk,2) = znh4phy * 86400 |
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| 292 | zw3d(ji,jj,jk,3) = znh4no3 * 86400 |
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| 293 | # endif |
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| 294 | #endif |
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| 295 | #endif |
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| 296 | END DO |
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| 297 | END DO |
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| 298 | END DO |
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| 299 | |
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| 300 | ! ! -------------------------- ! |
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| 301 | DO jk = jpkb, jpkm1 ! Upper ocean (bio-layers) ! |
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| 302 | ! ! -------------------------- ! |
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| 303 | DO jj = 2, jpjm1 |
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| 304 | DO ji = fs_2, fs_jpim1 |
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| 305 | ! remineralisation of all quantities towards nitrate |
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| 306 | |
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| 307 | ! trophic variables( det, zoo, phy, no3, nh4, dom) |
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| 308 | ! negative trophic variables DO not contribute to the fluxes |
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| 309 | zdet = MAX( 0.e0, trn(ji,jj,jk,jpdet) ) |
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| 310 | zzoo = MAX( 0.e0, trn(ji,jj,jk,jpzoo) ) |
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| 311 | zphy = MAX( 0.e0, trn(ji,jj,jk,jpphy) ) |
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| 312 | zno3 = MAX( 0.e0, trn(ji,jj,jk,jpno3) ) |
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| 313 | znh4 = MAX( 0.e0, trn(ji,jj,jk,jpnh4) ) |
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| 314 | zdom = MAX( 0.e0, trn(ji,jj,jk,jpdom) ) |
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| 315 | |
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| 316 | ! Limitations |
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| 317 | zlt = 0.e0 |
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| 318 | zle = 0.e0 |
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| 319 | zlno3 = 0.e0 |
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| 320 | zlnh4 = 0.e0 |
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| 321 | |
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| 322 | ! sinks and sources |
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| 323 | ! phytoplankton production and exsudation |
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| 324 | zno3phy = 0.e0 |
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| 325 | znh4phy = 0.e0 |
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| 326 | zphydom = 0.e0 |
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| 327 | zphynh4 = 0.e0 |
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| 328 | |
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| 329 | ! zooplankton production |
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| 330 | zphyzoo = 0.e0 ! grazing |
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| 331 | zdetzoo = 0.e0 |
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| 332 | |
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| 333 | zzoodet = 0.e0 ! fecal pellets production |
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| 334 | |
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| 335 | zzoonh4 = tauzn * fzoolab * zzoo ! zooplankton liquide excretion |
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| 336 | zzoodom = tauzn * (1 - fzoolab) * zzoo |
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| 337 | |
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| 338 | ! mortality |
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| 339 | zphydet = tmminp * zphy ! phytoplankton mortality |
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| 340 | |
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| 341 | zzoobod = 0.e0 ! zooplankton mortality |
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| 342 | zboddet = 0.e0 ! closure : flux fbod is redistributed below level jpkbio |
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| 343 | |
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| 344 | ! detritus and dom breakdown |
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| 345 | zdetnh4 = taudn * fdetlab * zdet |
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| 346 | zdetdom = taudn * (1 - fdetlab) * zdet |
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| 347 | |
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| 348 | zdomnh4 = taudomn * zdom |
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| 349 | zdomaju = (1 - redf/reddom) * (zphydom + zzoodom + zdetdom) |
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| 350 | |
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| 351 | ! Nitrification |
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| 352 | znh4no3 = taunn * znh4 |
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| 353 | |
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| 354 | |
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| 355 | ! determination of trends |
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| 356 | ! total trend for each biological tracer |
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| 357 | zphya = zno3phy + znh4phy - zphynh4 - zphydom - zphyzoo - zphydet |
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| 358 | zzooa = zphyzoo + zdetzoo - zzoodet - zzoodom - zzoonh4 - zzoobod |
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| 359 | zno3a = - zno3phy + znh4no3 |
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| 360 | znh4a = - znh4phy - znh4no3 + zphynh4 + zzoonh4 + zdomnh4 + zdetnh4 + zdomaju |
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| 361 | zdeta = zphydet + zzoodet - zdetzoo - zdetnh4 - zdetdom + zboddet |
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| 362 | zdoma = zphydom + zzoodom + zdetdom - zdomnh4 - zdomaju |
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| 363 | |
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| 364 | ! tracer flux at totox-point added to the general trend |
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| 365 | tra(ji,jj,jk,jpdet) = tra(ji,jj,jk,jpdet) + zdeta |
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| 366 | tra(ji,jj,jk,jpzoo) = tra(ji,jj,jk,jpzoo) + zzooa |
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| 367 | tra(ji,jj,jk,jpphy) = tra(ji,jj,jk,jpphy) + zphya |
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| 368 | tra(ji,jj,jk,jpno3) = tra(ji,jj,jk,jpno3) + zno3a |
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| 369 | tra(ji,jj,jk,jpnh4) = tra(ji,jj,jk,jpnh4) + znh4a |
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| 370 | tra(ji,jj,jk,jpdom) = tra(ji,jj,jk,jpdom) + zdoma |
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| 371 | ! |
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| 372 | #if defined key_trc_diabio |
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| 373 | trbio(ji,jj,jk,jp_lob0_trd ) = zno3phy |
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| 374 | trbio(ji,jj,jk,jp_lob0_trd + 1) = znh4phy |
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| 375 | trbio(ji,jj,jk,jp_lob0_trd + 2) = zphynh4 |
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| 376 | trbio(ji,jj,jk,jp_lob0_trd + 3) = zphydom |
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| 377 | trbio(ji,jj,jk,jp_lob0_trd + 4) = zphyzoo |
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| 378 | trbio(ji,jj,jk,jp_lob0_trd + 5) = zphydet |
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| 379 | trbio(ji,jj,jk,jp_lob0_trd + 6) = zdetzoo |
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| 380 | trbio(ji,jj,jk,jp_lob0_trd + 8) = zzoodet |
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| 381 | trbio(ji,jj,jk,jp_lob0_trd + 9) = zzoobod |
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| 382 | trbio(ji,jj,jk,jp_lob0_trd + 10) = zzoonh4 |
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| 383 | trbio(ji,jj,jk,jp_lob0_trd + 11) = zzoodom |
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| 384 | trbio(ji,jj,jk,jp_lob0_trd + 12) = znh4no3 |
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| 385 | trbio(ji,jj,jk,jp_lob0_trd + 13) = zdomnh4 |
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| 386 | trbio(ji,jj,jk,jp_lob0_trd + 14) = zdetnh4 |
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| 387 | trbio(ji,jj,jk,jp_lob0_trd + 15) = zdetdom |
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| 388 | #endif |
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| 389 | IF( l_trdtrc ) THEN |
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| 390 | ztrbio(ji,jj,jk,jp_lob0_trd ) = zno3phy |
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| 391 | ztrbio(ji,jj,jk,jp_lob0_trd + 1) = znh4phy |
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| 392 | ztrbio(ji,jj,jk,jp_lob0_trd + 2) = zphynh4 |
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| 393 | ztrbio(ji,jj,jk,jp_lob0_trd + 3) = zphydom |
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| 394 | ztrbio(ji,jj,jk,jp_lob0_trd + 4) = zphyzoo |
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| 395 | ztrbio(ji,jj,jk,jp_lob0_trd + 5) = zphydet |
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| 396 | ztrbio(ji,jj,jk,jp_lob0_trd + 6) = zdetzoo |
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| 397 | ! trend number 8 in trcsed |
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| 398 | ztrbio(ji,jj,jk,jp_lob0_trd + 8) = zzoodet |
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| 399 | ztrbio(ji,jj,jk,jp_lob0_trd + 9) = zzoobod |
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| 400 | ztrbio(ji,jj,jk,jp_lob0_trd + 10) = zzoonh4 |
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| 401 | ztrbio(ji,jj,jk,jp_lob0_trd + 11) = zzoodom |
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| 402 | ztrbio(ji,jj,jk,jp_lob0_trd + 12) = znh4no3 |
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| 403 | ztrbio(ji,jj,jk,jp_lob0_trd + 13) = zdomnh4 |
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| 404 | ztrbio(ji,jj,jk,jp_lob0_trd + 14) = zdetnh4 |
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| 405 | ztrbio(ji,jj,jk,jp_lob0_trd + 15) = zdetdom |
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| 406 | ! trend number 17 in trcexp |
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| 407 | ENDIF |
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| 408 | #if defined key_trc_diaadd && defined key_trc_dia3d |
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| 409 | # if ! defined key_iomput |
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| 410 | trc3d(ji,jj,jk,jp_lob0_3d ) = zno3phy * 86400 |
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| 411 | trc3d(ji,jj,jk,jp_lob0_3d + 1) = znh4phy * 86400 |
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| 412 | trc3d(ji,jj,jk,jp_lob0_3d + 2) = znh4no3 * 86400 |
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| 413 | # else |
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| 414 | zw3d(ji,jj,jk,1) = zno3phy * 86400 |
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| 415 | zw3d(ji,jj,jk,2) = znh4phy * 86400 |
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| 416 | zw3d(ji,jj,jk,3) = znh4no3 * 86400 |
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| 417 | # endif |
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| 418 | #endif |
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| 419 | END DO |
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| 420 | END DO |
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| 421 | END DO |
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| 422 | |
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| 423 | #if defined key_trc_diaadd |
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| 424 | ! Lateral boundary conditions |
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| 425 | # if ! defined key_iomput |
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| 426 | DO jl = jp_lob0_2d, jp_lob1_2d |
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| 427 | CALL lbc_lnk( trc2d(:,:,jl),'T', 1. ) |
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| 428 | END DO |
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| 429 | # else |
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| 430 | DO jl = 1, 17 |
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| 431 | CALL lbc_lnk( zw2d(:,:,jl),'T', 1. ) |
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| 432 | END DO |
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| 433 | ! Save diagnostics |
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| 434 | CALL iom_put( "TNO3PHY", zw2d(:,:,1) ) |
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| 435 | CALL iom_put( "TNH4PHY", zw2d(:,:,2) ) |
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| 436 | CALL iom_put( "TPHYDOM", zw2d(:,:,3) ) |
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| 437 | CALL iom_put( "TPHYNH4", zw2d(:,:,4) ) |
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| 438 | CALL iom_put( "TPHYZOO", zw2d(:,:,5) ) |
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| 439 | CALL iom_put( "TPHYDET", zw2d(:,:,6) ) |
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| 440 | CALL iom_put( "TDETZOO", zw2d(:,:,7) ) |
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| 441 | CALL iom_put( "TZOODET", zw2d(:,:,8) ) |
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| 442 | CALL iom_put( "TZOOBOD", zw2d(:,:,9) ) |
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| 443 | CALL iom_put( "TZOONH4", zw2d(:,:,10) ) |
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| 444 | CALL iom_put( "TZOODOM", zw2d(:,:,11) ) |
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| 445 | CALL iom_put( "TNH4NO3", zw2d(:,:,12) ) |
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| 446 | CALL iom_put( "TDOMNH4", zw2d(:,:,13) ) |
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| 447 | CALL iom_put( "TDETNH4", zw2d(:,:,14) ) |
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| 448 | CALL iom_put( "TPHYTOT", zw2d(:,:,15) ) |
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| 449 | CALL iom_put( "TZOOTOT", zw2d(:,:,16) ) |
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| 450 | CALL iom_put( "TDETDOM", zw2d(:,:,17) ) |
|---|
| 451 | # endif |
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| 452 | #endif |
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| 453 | |
|---|
| 454 | #if defined key_trc_diaadd && defined key_trc_dia3d |
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| 455 | ! Lateral boundary conditions |
|---|
| 456 | # if ! defined key_iomput |
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| 457 | DO jl = jp_lob0_3d, jp_lob1_3d |
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| 458 | CALL lbc_lnk( trc3d(:,:,1,jl),'T', 1. ) |
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| 459 | END DO |
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| 460 | # else |
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| 461 | DO jl = 1, 3 |
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| 462 | CALL lbc_lnk( zw3d(:,:,:,jl),'T', 1. ) |
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| 463 | END DO |
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| 464 | ! save diagnostics |
|---|
| 465 | CALL iom_put( "FNO3PHY", zw3d(:,:,:,1) ) |
|---|
| 466 | CALL iom_put( "FNH4PHY", zw3d(:,:,:,2) ) |
|---|
| 467 | CALL iom_put( "FNH4NO3", zw3d(:,:,:,3) ) |
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| 468 | # endif |
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| 469 | #endif |
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| 470 | |
|---|
| 471 | #if defined key_trc_diabio |
|---|
| 472 | ! Lateral boundary conditions on trcbio |
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| 473 | DO jl = jp_lob0_trd, jp_lob1_trd |
|---|
| 474 | CALL lbc_lnk( trbio(:,:,1,jl),'T', 1. ) |
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| 475 | END DO |
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| 476 | #endif |
|---|
| 477 | ! |
|---|
| 478 | IF( l_trdtrc ) THEN |
|---|
| 479 | DO jl = jp_lob0_trd, jp_lob1_trd |
|---|
| 480 | CALL trd_mod_trc( ztrbio(:,:,:,jl), jl, kt ) ! handle the trend |
|---|
| 481 | END DO |
|---|
| 482 | ENDIF |
|---|
| 483 | |
|---|
| 484 | IF( l_trdtrc ) DEALLOCATE( ztrbio ) |
|---|
| 485 | |
|---|
| 486 | IF(ln_ctl) THEN ! print mean trends (used for debugging) |
|---|
| 487 | WRITE(charout, FMT="('bio')") |
|---|
| 488 | CALL prt_ctl_trc_info(charout) |
|---|
| 489 | CALL prt_ctl_trc(tab4d=tra, mask=tmask, clinfo=ctrcnm) |
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| 490 | ENDIF |
|---|
| 491 | |
|---|
| 492 | END SUBROUTINE trc_bio |
|---|
| 493 | |
|---|
| 494 | #else |
|---|
| 495 | !!====================================================================== |
|---|
| 496 | !! Dummy module : No PISCES bio-model |
|---|
| 497 | !!====================================================================== |
|---|
| 498 | CONTAINS |
|---|
| 499 | SUBROUTINE trc_bio( kt ) ! Empty routine |
|---|
| 500 | INTEGER, INTENT( in ) :: kt |
|---|
| 501 | WRITE(*,*) 'trc_bio: You should not have seen this print! error?', kt |
|---|
| 502 | END SUBROUTINE trc_bio |
|---|
| 503 | #endif |
|---|
| 504 | |
|---|
| 505 | !!====================================================================== |
|---|
| 506 | END MODULE trcbio |
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