#!/bin/bash ############################################################ # Author : Simona Flavoni for NEMO # Contact: sflod@locean-ipsl.upmc.fr # # sette_test-cases.sh : principal script of SET TEsts for NEMO (SETTE) # : this script : compiles, run and tests TEST_CASES # # : TO DO: test if nitend is equal to end of run.stat # ---------------------------------------------------------------------- # NEMO/SETTE , NEMO Consortium (2018) # Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) # ---------------------------------------------------------------------- # # ############################################################# #set -vx set -o posix #set -u #set -e # =========== # DESCRIPTION # =========== # # Variables to be checked by user: # # COMPILER : name of compiler as defined in NEMOGCM/ARCH directory # BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs # BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs # INTERACT_FLAG : flag to run in interactive mode "yes" # to run in batch mode "no" # MPIRUN_FLAG : flag to run in parallel (MPI) "yes" # to run in sequential mode (NB_PROC = 1) "no" # USING_XIOS : flag to control the activation of key_iomput # "yes" to compile using key_iomput and link to the external XIOS library # "no" to compile without key_iomput and link to the old IOIPSL library # USING_MPMD : flag to control the use of stand-alone IO servers # requires USING_XIOS="yes" # "yes" to run in MPMD (detached) mode with stand-alone IO servers # "no" to run in SPMD (attached) mode without separate IO servers # NUM_XIOSERVERS : number of stand-alone IO servers to employ # set to zero if USING_MPMD="no" # # Principal script is sette_test-cases.sh, that calls # # makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe # and links to opa in ${CONFIG_NAME}/EXP00) # # param.cfg : sets and loads following directories: # # FORCING_DIR : is the directory for forcing files (tarfile) # INPUT_DIR : is the directory for input files storing # TMPDIR : is the temporary directory (if needed) # NEMO_VALIDATION_DIR : is the validation directory # # (NOTE: this file is the same for all configrations to be tested with sette_test-cases.sh) # # all_functions.sh : loads functions used by sette (note: new functions can be added here) # set_namelist : function declared in all_functions that sets namelist parameters # post_test_tidyup : creates validation storage directory and copies required output files # (run.stat and ocean.output) in it after execution of test. # # VALIDATION tree is: # # NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE) # # prepare_exe_dir.sh : defines and creates directory where the test is executed # execution directory takes name of TEST_NAME defined for every test # in sette_test-cases.sh. (each test in executed in its own directory) # # prepare_job.sh : to generate the script run_job.sh # # fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes") # see sette_test-cases.sh and BATCH_TEMPLATE directory # # NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which # can be found paths to the input tar file) # NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR} # directory # NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists # remain in ${NEW_CONF}/EXP00 # # NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of # executed commands # # NOTE: if sette_test-cases.sh is stopped in output.sette there is written the last command # executed by sette_test-cases.sh # # example use: ./sette_test-cases.sh ######################################################################################### # # Compiler among those in NEMOGCM/ARCH COMPILER=X64_ADA export BATCH_COMMAND_PAR="llsubmit" export BATCH_COMMAND_SEQ=$BATCH_COMMAND_PAR export INTERACT_FLAG="no" export MPIRUN_FLAG="yes" export USING_XIOS="yes" # export DEL_KEYS="key_iomput" if [ ${USING_XIOS} == "yes" ] then export DEL_KEYS="" fi # # Settings which control the use of stand alone servers (only relevant if using xios) # export USING_MPMD="no" export NUM_XIOSERVERS=4 export JOB_PREFIX=batch-mpmd # if [ ${USING_MPMD} == "no" ] then export NUM_XIOSERVERS=0 export JOB_PREFIX=batch fi # # if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no"] then echo "Incompatible choices. MPMD mode requires the XIOS server" exit fi # Directory to run the tests SETTE_DIR=$(cd $(dirname "$0"); pwd) MAIN_DIR=$(dirname $SETTE_DIR) CONFIG_DIR0=${MAIN_DIR}/CONFIG TOOLS_DIR=${MAIN_DIR}/TOOLS COMPIL_DIR=${TOOLS_DIR}/COMPILE CMP_NAM=${1:-$COMPILER} # Copy job_batch_COMPILER file for specific compiler into job_batch_template cd ${SETTE_DIR} cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template || exit # Description of configuration tested: # OVERFLOW : 1 TEST s-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs # & (dynamics) advection schemes: flux form (ubs, centered), vector form (een) # zps-coordinates : (tracers) Advection schemes: FCT2, FCT4, ubs # & (dynamics) advection schemes: flux form (ubs, centered), vector form (een, and een + Hollingsworth correction) # LOCK_EXCHANGE : 2 # VORTEX : 3 # WAD : 4 # SAS_BIPER : 5 for config in 5 do ####### #### ALL tests tested with only 1 proc ==> no different domain decomposition! ####### # TESTS FOR OVERFLOW CONFIGURATION if [ ${config} -eq 1 ] ; then ## Restartability tests for OVERFLOW export TEST_NAME="LONG" cd ${CONFIG_DIR0} . ./makenemo -m ${CMP_NAM} -a TEST_CASES -n OVERFLOW_TESTs -r OVERFLOW -j 8 del_key ${DEL_KEYS} cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"OVF_LONG\" set_namelist namelist_cfg nn_it000 1 set_namelist namelist_cfg nn_itend 120 set_namelist namelist_cfg nn_stock 60 set_namelist namelist_cfg ln_clobber .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} export TEST_NAME="SHORT" . ./prepare_exe_dir.sh cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"OVF_SHORT\" set_namelist namelist_cfg nn_it000 61 set_namelist namelist_cfg nn_itend 120 set_namelist namelist_cfg nn_stock 60 set_namelist namelist_cfg ln_rstart .true. set_namelist namelist_cfg nn_rstctl 2 set_namelist namelist_cfg ln_clobber .true. set_namelist namelist_top_cfg ln_rsttr .true. set_namelist namelist_top_cfg nn_rsttr 2 set_namelist namelist_cfg cn_ocerst_in \"OVF_LONG_00000060_restart\" if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi ln -sf ../LONG/OVF_LONG_00000060_restart.nc . if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} ## Test for all advection, vert. coordinates, vector form, flux form: test runability and complete all time steps ## Needed namelist-xxxx for every type of run tested cd ${CONFIG_DIR}/${NEW_CONF}/EXP00 for file in $(echo `ls namelist_*_cfg `) ; do TEST_NAME=`ls $file | sed -e "s/namelist_//" | sed -e "s/_cfg//"` TEST_NAME="EXP-${TEST_NAME}" `mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}` export TEST_NAME="${TEST_NAME}" ## cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg ln_clobber .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} ## done fi # TESTS FOR LOCK_EXCHANGE CONFIGURATION if [ ${config} -eq 2 ] ; then ## Restartability tests for LOCK_EXCHANGE export TEST_NAME="LONG" cd ${CONFIG_DIR0} . ./makenemo -m ${CMP_NAM} -a TEST_CASES -n LOCK_EXCHANGE_TESTs -r OVERFLOW -j 8 del_key ${DEL_KEYS} cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"LOCK_LONG\" set_namelist namelist_cfg nn_it000 1 set_namelist namelist_cfg nn_stock 60 set_namelist namelist_cfg nn_itend 120 set_namelist namelist_cfg ln_clobber .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} export TEST_NAME="SHORT" . ./prepare_exe_dir.sh cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"LOCK_SHORT\" set_namelist namelist_cfg nn_it000 61 set_namelist namelist_cfg nn_itend 120 set_namelist namelist_cfg nn_stock 60 set_namelist namelist_cfg ln_rstart .true. set_namelist namelist_cfg nn_rstctl 2 set_namelist namelist_cfg ln_clobber .true. set_namelist namelist_top_cfg ln_rsttr .true. set_namelist namelist_top_cfg nn_rsttr 2 set_namelist namelist_cfg cn_ocerst_in \"LOCK_LONG_00000060_restart\" if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi ln -sf ../LONG/LOCK_LONG_00000060_restart.nc . if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} ## Test for all advection, vector form, flux form: test runability and complete all time steps ## Needed namelist-xxxx for every type of run tested cd ${CONFIG_DIR}/${NEW_CONF}/EXP00 for file in $(echo `ls namelist_*_cfg `) ; do TEST_NAME=`ls $file | sed -e "s/namelist_//" | sed -e "s/_cfg//"` TEST_NAME="EXP-${TEST_NAME}" `mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}` export TEST_NAME="${TEST_NAME}" ## cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg ln_clobber .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} ## done fi # TESTS FOR VORTEX CONFIGURATION if [ ${config} -eq 3 ] ; then ## Restartability tests for VORTEX export TEST_NAME="LONG" cd ${CONFIG_DIR0} . ./makenemo -m ${CMP_NAM} -a TEST_CASES -n VORTEX_TESTs -r VORTEX -j 8 del_key ${DEL_KEYS} cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"VORTEX_LONG\" set_namelist namelist_cfg nn_it000 1 set_namelist namelist_cfg nn_stock 60 set_namelist namelist_cfg nn_itend 120 set_namelist namelist_cfg ln_clobber .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} export TEST_NAME="SHORT" . ./prepare_exe_dir.sh cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"VORTEX_SHORT\" set_namelist namelist_cfg nn_it000 61 set_namelist namelist_cfg nn_itend 120 set_namelist namelist_cfg nn_stock 60 set_namelist namelist_cfg ln_rstart .true. set_namelist namelist_cfg nn_rstctl 2 set_namelist namelist_cfg ln_clobber .true. set_namelist namelist_top_cfg ln_rsttr .true. set_namelist namelist_top_cfg nn_rsttr 2 set_namelist namelist_cfg cn_ocerst_in \"VORTEX_LONG_00000060_restart\" if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi ln -sf ../LONG/VORTEX_LONG_00000060_restart.nc . if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} ## Test for all advection, vert. coordinates, vector form, flux form: test runability and complete all time steps ## Needed namelist-xxxx for every type of run tested cd ${CONFIG_DIR}/${NEW_CONF}/EXP00 for file in $(echo `ls namelist_*_cfg `) ; do TEST_NAME=`ls $file | sed -e "s/namelist_//" | sed -e "s/_cfg//"` TEST_NAME="EXP-${TEST_NAME}" `mkdir ${CONFIG_DIR}/${NEW_CONF}/${TEST_NAME}` export TEST_NAME="${TEST_NAME}" ## cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg ln_clobber .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_EMPTY.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} ## done fi #--clem: # TESTS FOR SAS_BIPER CONFIGURATION if [ ${config} -eq 5 ] ; then ## Restartability tests for SAS_BIPER export TEST_NAME="LONG" cd ${CONFIG_DIR0} . ./makenemo -m ${CMP_NAM} -n SAS_BIPER_ST -r SAS_BIPER -a TEST_CASES -j 8 del_key ${DEL_KEYS} cd ${SETTE_DIR} . ./param.cfg . ./all_functions.sh . ./prepare_exe_dir.sh JOB_FILE=${EXE_DIR}/run_job.sh NPROC=1 if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"SAS_BIPER_LONG\" set_namelist namelist_cfg nn_it000 1 set_namelist namelist_cfg nn_itend 200 set_namelist namelist_cfg nn_stock 100 set_namelist namelist_cfg ln_clobber .true. # set_namelist namelist_cfg nn_fsbc 1 set_namelist namelist_cfg jpni 1 set_namelist namelist_cfg jpnj 1 set_namelist namelist_cfg jpnij 1 set_namelist namelist_ice_cfg ln_icethd .true. set_namelist namelist_ice_cfg ln_icedyn .true. set_namelist namelist_ice_cfg ln_dynFULL .true. set_namelist namelist_ice_cfg ln_dynRHGADV .false. set_namelist namelist_ice_cfg ln_dynADV .false. set_namelist namelist_ice_cfg ln_adv_Pra .false. set_namelist namelist_ice_cfg ln_adv_UMx .true. set_namelist namelist_ice_cfg ln_icediachk .true. set_namelist 1_namelist_cfg cn_exp \"SAS_BIPER_LONG\" set_namelist 1_namelist_cfg nn_it000 1 set_namelist 1_namelist_cfg nn_itend 600 set_namelist 1_namelist_cfg nn_stock 300 set_namelist 1_namelist_cfg ln_clobber .true. set_namelist 1_namelist_cfg jpni 1 set_namelist 1_namelist_cfg jpnj 1 set_namelist 1_namelist_cfg jpnij 1 set_namelist 1_namelist_ice_cfg ln_icethd .true. set_namelist 1_namelist_ice_cfg ln_icedyn .true. set_namelist 1_namelist_ice_cfg ln_dynFULL .true. set_namelist 1_namelist_ice_cfg ln_dynRHGADV .false. set_namelist 1_namelist_ice_cfg ln_dynADV .false. set_namelist 1_namelist_ice_cfg ln_adv_Pra .false. set_namelist 1_namelist_ice_cfg ln_adv_UMx .true. # set_namelist 1_namelist_ice_cfg ln_icediachk .true. if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_SASBIPER.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} export TEST_NAME="SHORT" . ./prepare_exe_dir.sh cd ${EXE_DIR} set_namelist namelist_cfg cn_exp \"SAS_BIPER_SHORT\" set_namelist namelist_cfg nn_it000 101 set_namelist namelist_cfg nn_itend 200 set_namelist namelist_cfg nn_stock 100 set_namelist namelist_cfg ln_rstart .true. set_namelist namelist_cfg nn_rstctl 2 set_namelist namelist_cfg ln_clobber .true. set_namelist namelist_cfg jpni 1 set_namelist namelist_cfg jpnj 1 set_namelist namelist_cfg jpnij 1 set_namelist namelist_ice_cfg ln_icethd .true. set_namelist namelist_ice_cfg ln_icedyn .true. set_namelist namelist_ice_cfg ln_dynFULL .true. set_namelist namelist_ice_cfg ln_dynRHGADV .false. set_namelist namelist_ice_cfg ln_dynADV .false. set_namelist namelist_ice_cfg ln_adv_Pra .false. set_namelist namelist_ice_cfg ln_adv_UMx .true. set_namelist namelist_ice_cfg ln_icediachk .true. set_namelist namelist_cfg cn_ocerst_in \"SAS_BIPER_LONG_00000100_restart\" set_namelist namelist_ice_cfg cn_icerst_in \"SAS_BIPER_LONG_00000100_restart_ice\" set_namelist 1_namelist_cfg cn_exp \"SAS_BIPER_SHORT\" set_namelist 1_namelist_cfg nn_it000 301 set_namelist 1_namelist_cfg nn_itend 600 set_namelist 1_namelist_cfg nn_stock 300 set_namelist 1_namelist_cfg ln_rstart .true. set_namelist 1_namelist_cfg nn_rstctl 2 set_namelist 1_namelist_cfg ln_clobber .true. set_namelist 1_namelist_cfg jpni 1 set_namelist 1_namelist_cfg jpnj 1 set_namelist 1_namelist_cfg jpnij 1 set_namelist 1_namelist_ice_cfg ln_icethd .true. set_namelist 1_namelist_ice_cfg ln_icedyn .true. set_namelist 1_namelist_ice_cfg ln_dynFULL .true. set_namelist 1_namelist_ice_cfg ln_dynRHGADV .false. set_namelist 1_namelist_ice_cfg ln_dynADV .false. set_namelist 1_namelist_ice_cfg ln_adv_Pra .false. set_namelist 1_namelist_ice_cfg ln_adv_UMx .true. # set_namelist 1_namelist_ice_cfg ln_icediachk .true. set_namelist 1_namelist_cfg cn_ocerst_in \"SAS_BIPER_LONG_00000300_restart\" set_namelist 1_namelist_ice_cfg cn_icerst_in \"SAS_BIPER_LONG_00000300_restart_ice\" if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi if [ $NPROC -eq 1 ] ; then ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart.nc . ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice.nc . else for (( i=1; i<=$NPROC; i++)) ; do L_NPROC=$(( $i - 1 )) L_NPROC=`printf "%04d\n" ${L_NPROC}` ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_${L_NPROC}.nc . ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice_${L_NPROC}.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_${L_NPROC}.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice_${L_NPROC}.nc . done fi if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi if [ $NPROC -eq 1 ] ; then ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart.nc . ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice.nc . else for (( i=1; i<=$NPROC; i++)) ; do L_NPROC=$(( $i - 1 )) L_NPROC=`printf "%04d\n" ${L_NPROC}` ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_${L_NPROC}.nc . ln -sf ../LONG/SAS_BIPER_LONG_00000100_restart_ice_${L_NPROC}.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_${L_NPROC}.nc . ln -sf ../LONG/1_SAS_BIPER_LONG_00000300_restart_ice_${L_NPROC}.nc . done fi if [ ${USING_MPMD} == "yes" ] ; then set_xio_using_server iodef.xml true else set_xio_using_server iodef.xml false fi cd ${SETTE_DIR} . ./prepare_job.sh input_SASBIPER.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} cd ${SETTE_DIR} . ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG} fi #---- done