| 1 | MODULE bio_medusa_diag_slice_mod |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE bio_medusa_diag_slice_mod *** |
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| 4 | !! Diagnostic calculations at different levels |
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| 5 | !!====================================================================== |
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| 6 | !! History : |
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| 7 | !! - ! 2017-04 (M. Stringer) Code taken from trcbio_medusa.F90 |
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| 8 | !!---------------------------------------------------------------------- |
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| 9 | #if defined key_medusa |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | !! MEDUSA bio-model |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | |
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| 14 | IMPLICIT NONE |
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| 15 | PRIVATE |
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| 16 | |
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| 17 | PUBLIC bio_medusa_diag_slice ! Called in trcbio_medusa.F90 |
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| 18 | |
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| 19 | !!---------------------------------------------------------------------- |
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| 20 | !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) |
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| 21 | !! $Id$ |
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| 22 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
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| 23 | !!---------------------------------------------------------------------- |
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| 24 | |
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| 25 | CONTAINS |
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| 26 | |
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| 27 | SUBROUTINE bio_medusa_diag_slice( jk ) |
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| 28 | !!--------------------------------------------------------------------- |
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| 29 | !! *** ROUTINE bio_medusa_diag_slice *** |
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| 30 | !! This called from TRC_BIO_MEDUSA and |
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| 31 | !! - ... |
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| 32 | !!---------------------------------------------------------------------- |
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| 33 | USE bio_medusa_mod |
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| 34 | USE par_medusa, ONLY: jpchd, jpchn |
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| 35 | USE dom_oce, ONLY: tmask |
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| 36 | USE in_out_manager, ONLY: lwp, numout |
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| 37 | USE iom, ONLY: iom_put |
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| 38 | USE lbclnk, ONLY: lbc_lnk |
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| 39 | USE oce, ONLY: CO2Flux_out_cpl, DMS_out_cpl |
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| 40 | USE par_oce, ONLY: jpi, jpj |
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| 41 | USE sbc_oce, ONLY: lk_oasis, qsr, wndm |
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| 42 | USE sms_medusa, ONLY: i0100, i0150, i0200, i0500, i1000, & |
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| 43 | f2_ccd_arg, f2_ccd_cal, & |
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| 44 | f3_co3, f3_h2co3, f3_hco3, f3_pH, & |
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| 45 | jdms, ocal_ccd, xpar, xze, & |
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| 46 | zb_co2_flx, zb_dms_srf, & |
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| 47 | zn_co2_flx, zn_dms_srf |
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| 48 | USE trc, ONLY: med_diag |
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| 49 | |
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| 50 | !! The vertical level |
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| 51 | INTEGER, INTENT( in ) :: jk |
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| 52 | !!---------------------------------------------------------------------- |
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| 53 | |
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| 54 | !!----------------------------------------- |
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| 55 | !! |
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| 56 | !! 2d specific k level diags |
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| 57 | !! |
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| 58 | !!----------------------------------------- |
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| 59 | # if defined key_debug_medusa |
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| 60 | IF (lwp) write (numout,*) 'bio_medusa_diag_slice: start jk = ', jk |
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| 61 | CALL flush(numout) |
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| 62 | # endif |
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| 63 | !! |
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| 64 | IF (jk.eq.1) THEN |
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| 65 | IF( med_diag%MED_QSR%dgsave ) THEN |
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| 66 | CALL iom_put( "MED_QSR" , qsr ) ! |
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| 67 | ENDIF |
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| 68 | IF( med_diag%MED_XPAR%dgsave ) THEN |
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| 69 | CALL iom_put( "MED_XPAR" , xpar(:,:,jk) ) ! |
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| 70 | ENDIF |
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| 71 | IF( med_diag%OCAL_CCD%dgsave ) THEN |
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| 72 | CALL iom_put( "OCAL_CCD" , ocal_ccd ) ! |
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| 73 | ENDIF |
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| 74 | IF( med_diag%FE_0000%dgsave ) THEN |
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| 75 | CALL iom_put( "FE_0000" , xFree ) ! |
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| 76 | ENDIF |
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| 77 | IF( med_diag%MED_XZE%dgsave ) THEN |
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| 78 | CALL iom_put( "MED_XZE" , xze ) ! |
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| 79 | ENDIF |
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| 80 | # if defined key_roam |
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| 81 | IF( med_diag%WIND%dgsave ) THEN |
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| 82 | CALL iom_put( "WIND" , wndm ) |
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| 83 | ENDIF |
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| 84 | IF( med_diag%ATM_PCO2%dgsave ) THEN |
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| 85 | CALL iom_put( "ATM_PCO2" , f_pco2a2d ) |
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| 86 | DEALLOCATE( f_pco2a2d ) |
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| 87 | ENDIF |
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| 88 | IF( med_diag%OCN_PH%dgsave ) THEN |
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| 89 | zw2d(:,:) = f3_pH(:,:,jk) |
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| 90 | CALL iom_put( "OCN_PH" , zw2d ) |
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| 91 | ENDIF |
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| 92 | IF( med_diag%OCN_PCO2%dgsave ) THEN |
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| 93 | CALL iom_put( "OCN_PCO2" , f_pco2w2d ) |
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| 94 | DEALLOCATE( f_pco2w2d ) |
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| 95 | ENDIF |
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| 96 | IF( med_diag%OCNH2CO3%dgsave ) THEN |
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| 97 | zw2d(:,:) = f3_h2co3(:,:,jk) |
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| 98 | CALL iom_put( "OCNH2CO3" , zw2d ) |
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| 99 | ENDIF |
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| 100 | IF( med_diag%OCN_HCO3%dgsave ) THEN |
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| 101 | zw2d(:,:) = f3_hco3(:,:,jk) |
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| 102 | CALL iom_put( "OCN_HCO3" , zw2d ) |
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| 103 | ENDIF |
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| 104 | IF( med_diag%OCN_CO3%dgsave ) THEN |
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| 105 | zw2d(:,:) = f3_co3(:,:,jk) |
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| 106 | CALL iom_put( "OCN_CO3" , zw2d ) |
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| 107 | ENDIF |
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| 108 | IF( med_diag%CO2FLUX%dgsave ) THEN |
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| 109 | CALL iom_put( "CO2FLUX" , f_co2flux2d ) |
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| 110 | DEALLOCATE( f_co2flux2d ) |
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| 111 | ENDIF |
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| 112 | !! |
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| 113 | !! AXY (10/11/16): repeat CO2 flux diagnostic in UKMO/CMIP6 units; |
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| 114 | !! this both outputs the CO2 flux in specified units |
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| 115 | !! and sends the resulting field to the coupler |
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| 116 | !! JPALM (17/11/16): put CO2 flux (fgco2) alloc/unalloc/pass to zn |
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| 117 | !! out of diag list request |
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| 118 | CALL lbc_lnk( fgco2(:,:),'T',1. ) |
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| 119 | IF( med_diag%FGCO2%dgsave ) THEN |
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| 120 | CALL iom_put( "FGCO2" , fgco2 ) |
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| 121 | ENDIF |
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| 122 | !! JPALM (17/11/16): should mv this fgco2 part |
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| 123 | !! out of lk_iomput loop |
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| 124 | zb_co2_flx = zn_co2_flx |
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| 125 | zn_co2_flx = fgco2 |
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| 126 | IF (lk_oasis) THEN |
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| 127 | CO2Flux_out_cpl = zn_co2_flx |
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| 128 | ENDIF |
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| 129 | DEALLOCATE( fgco2 ) |
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| 130 | !! --- |
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| 131 | IF( med_diag%OM_CAL%dgsave ) THEN |
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| 132 | CALL iom_put( "OM_CAL" , f_omcal ) |
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| 133 | ENDIF |
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| 134 | IF( med_diag%OM_ARG%dgsave ) THEN |
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| 135 | CALL iom_put( "OM_ARG" , f_omarg ) |
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| 136 | ENDIF |
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| 137 | IF( med_diag%TCO2%dgsave ) THEN |
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| 138 | CALL iom_put( "TCO2" , f_TDIC2d ) |
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| 139 | DEALLOCATE( f_TDIC2d ) |
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| 140 | ENDIF |
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| 141 | IF( med_diag%TALK%dgsave ) THEN |
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| 142 | CALL iom_put( "TALK" , f_TALK2d ) |
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| 143 | DEALLOCATE( f_TALK2d ) |
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| 144 | ENDIF |
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| 145 | IF( med_diag%KW660%dgsave ) THEN |
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| 146 | CALL iom_put( "KW660" , f_kw6602d ) |
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| 147 | DEALLOCATE( f_kw6602d ) |
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| 148 | ENDIF |
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| 149 | IF( med_diag%ATM_PP0%dgsave ) THEN |
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| 150 | CALL iom_put( "ATM_PP0" , f_pp02d ) |
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| 151 | DEALLOCATE( f_pp02d ) |
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| 152 | ENDIF |
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| 153 | IF( med_diag%O2FLUX%dgsave ) THEN |
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| 154 | CALL iom_put( "O2FLUX" , f_o2flux2d ) |
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| 155 | DEALLOCATE( f_o2flux2d ) |
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| 156 | ENDIF |
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| 157 | IF( med_diag%O2SAT%dgsave ) THEN |
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| 158 | CALL iom_put( "O2SAT" , f_o2sat2d ) |
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| 159 | DEALLOCATE( f_o2sat2d ) |
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| 160 | ENDIF |
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| 161 | IF( med_diag%CAL_CCD%dgsave ) THEN |
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| 162 | CALL iom_put( "CAL_CCD" , f2_ccd_cal ) |
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| 163 | ENDIF |
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| 164 | IF( med_diag%ARG_CCD%dgsave ) THEN |
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| 165 | CALL iom_put( "ARG_CCD" , f2_ccd_arg ) |
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| 166 | ENDIF |
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| 167 | IF (jdms .eq. 1) THEN |
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| 168 | !! JPALM (12/12/19): put DMS (dms_surf2d) alloc/unalloc/pass |
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| 169 | !! to zn out of diag list request |
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| 170 | CALL lbc_lnk(dms_surf2d(:,:),'T',1. ) |
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| 171 | IF( med_diag%DMS_SURF%dgsave ) THEN |
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| 172 | CALL iom_put( "DMS_SURF" , dms_surf2d ) |
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| 173 | ENDIF |
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| 174 | zb_dms_srf = zn_dms_srf |
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| 175 | zn_dms_srf = dms_surf2d |
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| 176 | IF (lk_oasis) THEN |
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| 177 | DMS_out_cpl = zn_dms_srf |
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| 178 | ENDIF |
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| 179 | DEALLOCATE( dms_surf2d ) |
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| 180 | !! |
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| 181 | IF( med_diag%DMS_ANDR%dgsave ) THEN |
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| 182 | CALL iom_put( "DMS_ANDR" , dms_andr2d ) |
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| 183 | DEALLOCATE( dms_andr2d ) |
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| 184 | ENDIF |
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| 185 | IF( med_diag%DMS_SIMO%dgsave ) THEN |
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| 186 | CALL iom_put( "DMS_SIMO" , dms_simo2d ) |
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| 187 | DEALLOCATE( dms_simo2d ) |
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| 188 | ENDIF |
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| 189 | IF( med_diag%DMS_ARAN%dgsave ) THEN |
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| 190 | CALL iom_put( "DMS_ARAN" , dms_aran2d ) |
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| 191 | DEALLOCATE( dms_aran2d ) |
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| 192 | ENDIF |
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| 193 | IF( med_diag%DMS_HALL%dgsave ) THEN |
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| 194 | CALL iom_put( "DMS_HALL" , dms_hall2d ) |
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| 195 | DEALLOCATE( dms_hall2d ) |
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| 196 | ENDIF |
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| 197 | IF( med_diag%DMS_ANDM%dgsave ) THEN |
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| 198 | CALL iom_put( "DMS_ANDM" , dms_andm2d ) |
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| 199 | DEALLOCATE( dms_andm2d ) |
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| 200 | ENDIF |
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| 201 | ENDIF |
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| 202 | !! AXY (24/11/16): extra MOCSY diagnostics |
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| 203 | IF( med_diag%ATM_XCO2%dgsave ) THEN |
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| 204 | CALL iom_put( "ATM_XCO2" , f_xco2a_2d ) |
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| 205 | DEALLOCATE( f_xco2a_2d ) |
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| 206 | ENDIF |
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| 207 | IF( med_diag%OCN_FCO2%dgsave ) THEN |
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| 208 | CALL iom_put( "OCN_FCO2" , f_fco2w_2d ) |
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| 209 | DEALLOCATE( f_fco2w_2d ) |
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| 210 | ENDIF |
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| 211 | IF( med_diag%ATM_FCO2%dgsave ) THEN |
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| 212 | CALL iom_put( "ATM_FCO2" , f_fco2a_2d ) |
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| 213 | DEALLOCATE( f_fco2a_2d ) |
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| 214 | ENDIF |
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| 215 | IF( med_diag%OCN_RHOSW%dgsave ) THEN |
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| 216 | CALL iom_put( "OCN_RHOSW" , f_ocnrhosw_2d ) |
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| 217 | DEALLOCATE( f_ocnrhosw_2d ) |
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| 218 | ENDIF |
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| 219 | IF( med_diag%OCN_SCHCO2%dgsave ) THEN |
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| 220 | CALL iom_put( "OCN_SCHCO2" , f_ocnschco2_2d ) |
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| 221 | DEALLOCATE( f_ocnschco2_2d ) |
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| 222 | ENDIF |
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| 223 | IF( med_diag%OCN_KWCO2%dgsave ) THEN |
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| 224 | CALL iom_put( "OCN_KWCO2" , f_ocnkwco2_2d ) |
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| 225 | DEALLOCATE( f_ocnkwco2_2d ) |
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| 226 | ENDIF |
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| 227 | IF( med_diag%OCN_K0%dgsave ) THEN |
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| 228 | CALL iom_put( "OCN_K0" , f_ocnk0_2d ) |
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| 229 | DEALLOCATE( f_ocnk0_2d ) |
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| 230 | ENDIF |
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| 231 | IF( med_diag%CO2STARAIR%dgsave ) THEN |
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| 232 | CALL iom_put( "CO2STARAIR" , f_co2starair_2d ) |
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| 233 | DEALLOCATE( f_co2starair_2d ) |
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| 234 | ENDIF |
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| 235 | IF( med_diag%OCN_DPCO2%dgsave ) THEN |
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| 236 | CALL iom_put( "OCN_DPCO2" , f_ocndpco2_2d ) |
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| 237 | DEALLOCATE( f_ocndpco2_2d ) |
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| 238 | ENDIF |
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| 239 | # endif |
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| 240 | ELSE IF (jk.eq.i0100) THEN |
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| 241 | IF( med_diag%SDT__100%dgsave ) THEN |
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| 242 | zw2d(:,:) = fslownflux(:,:) * tmask(:,:,jk) |
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| 243 | CALL iom_put( "SDT__100" , zw2d ) |
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| 244 | ENDIF |
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| 245 | IF( med_diag%REG__100%dgsave ) THEN |
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| 246 | CALL iom_put( "REG__100" , fregen2d ) |
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| 247 | ENDIF |
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| 248 | IF( med_diag%FDT__100%dgsave ) THEN |
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| 249 | CALL iom_put( "FDT__100" , ffastn ) |
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| 250 | ENDIF |
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| 251 | IF( med_diag%RG__100F%dgsave ) THEN |
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| 252 | CALL iom_put( "RG__100F" , fregenfast ) |
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| 253 | ENDIF |
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| 254 | IF( med_diag%FDS__100%dgsave ) THEN |
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| 255 | CALL iom_put( "FDS__100" , ffastsi ) |
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| 256 | ENDIF |
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| 257 | IF( med_diag%RGS_100F%dgsave ) THEN |
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| 258 | CALL iom_put( "RGS_100F" , fregenfastsi ) |
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| 259 | ENDIF |
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| 260 | IF( med_diag%FE_0100%dgsave ) THEN |
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| 261 | CALL iom_put( "FE_0100" , xFree ) |
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| 262 | ENDIF |
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| 263 | # if defined key_roam |
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| 264 | IF( med_diag%RR_0100%dgsave ) THEN |
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| 265 | CALL iom_put( "RR_0100" , ffastca2d ) |
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| 266 | ENDIF |
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| 267 | IF( med_diag%SDC__100%dgsave ) THEN |
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| 268 | zw2d(:,:) = fslowcflux(:,:) * tmask(:,:,jk) |
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| 269 | CALL iom_put( "SDC__100" , zw2d ) |
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| 270 | ENDIF |
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| 271 | IF( med_diag%epC100%dgsave ) THEN |
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| 272 | zw2d(:,:) = (fslowcflux + ffastc) * tmask(:,:,jk) |
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| 273 | CALL iom_put( "epC100" , zw2d ) |
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| 274 | ENDIF |
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| 275 | IF( med_diag%epCALC100%dgsave ) THEN |
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| 276 | CALL iom_put( "epCALC100" , ffastca ) |
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| 277 | ENDIF |
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| 278 | IF( med_diag%epN100%dgsave ) THEN |
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| 279 | zw2d(:,:) = (fslownflux + ffastn) * tmask(:,:,jk) |
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| 280 | CALL iom_put( "epN100" , zw2d ) |
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| 281 | ENDIF |
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| 282 | IF( med_diag%epSI100%dgsave ) THEN |
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| 283 | CALL iom_put( "epSI100" , ffastsi ) |
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| 284 | ENDIF |
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| 285 | # endif |
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| 286 | ELSE IF (jk.eq.i0200) THEN |
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| 287 | IF( med_diag%SDT__200%dgsave ) THEN |
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| 288 | zw2d(:,:) = fslownflux(:,:) * tmask(:,:,jk) |
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| 289 | CALL iom_put( "SDT__200" , zw2d ) |
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| 290 | ENDIF |
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| 291 | IF( med_diag%REG__200%dgsave ) THEN |
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| 292 | CALL iom_put( "REG__200" , fregen2d ) |
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| 293 | ENDIF |
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| 294 | IF( med_diag%FDT__200%dgsave ) THEN |
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| 295 | CALL iom_put( "FDT__200" , ffastn ) |
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| 296 | ENDIF |
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| 297 | IF( med_diag%RG__200F%dgsave ) THEN |
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| 298 | CALL iom_put( "RG__200F" , fregenfast ) |
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| 299 | ENDIF |
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| 300 | IF( med_diag%FDS__200%dgsave ) THEN |
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| 301 | CALL iom_put( "FDS__200" , ffastsi ) |
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| 302 | ENDIF |
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| 303 | IF( med_diag%RGS_200F%dgsave ) THEN |
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| 304 | CALL iom_put( "RGS_200F" , fregenfastsi ) |
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| 305 | ENDIF |
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| 306 | IF( med_diag%FE_0200%dgsave ) THEN |
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| 307 | CALL iom_put( "FE_0200" , xFree ) |
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| 308 | ENDIF |
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| 309 | # if defined key_roam |
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| 310 | IF( med_diag%SDC__200%dgsave ) THEN |
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| 311 | zw2d(:,:) = fslowcflux(:,:) * tmask(:,:,jk) |
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| 312 | CALL iom_put( "SDC__200" , zw2d ) |
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| 313 | ENDIF |
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| 314 | # endif |
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| 315 | ELSE IF (jk.eq.i0500) THEN |
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| 316 | IF( med_diag%SDT__500%dgsave ) THEN |
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| 317 | zw2d(:,:) = fslownflux(:,:) * tmask(:,:,jk) |
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| 318 | CALL iom_put( "SDT__500" , zw2d ) |
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| 319 | ENDIF |
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| 320 | IF( med_diag%REG__500%dgsave ) THEN |
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| 321 | CALL iom_put( "REG__500" , fregen2d ) |
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| 322 | ENDIF |
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| 323 | IF( med_diag%FDT__500%dgsave ) THEN |
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| 324 | CALL iom_put( "FDT__500" , ffastn ) |
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| 325 | ENDIF |
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| 326 | IF( med_diag%RG__500F%dgsave ) THEN |
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| 327 | CALL iom_put( "RG__500F" , fregenfast ) |
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| 328 | ENDIF |
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| 329 | IF( med_diag%FDS__500%dgsave ) THEN |
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| 330 | CALL iom_put( "FDS__500" , ffastsi ) |
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| 331 | ENDIF |
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| 332 | IF( med_diag%RGS_500F%dgsave ) THEN |
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| 333 | CALL iom_put( "RGS_500F" , fregenfastsi ) |
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| 334 | ENDIF |
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| 335 | IF( med_diag%FE_0500%dgsave ) THEN |
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| 336 | CALL iom_put( "FE_0500" , xFree ) |
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| 337 | ENDIF |
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| 338 | # if defined key_roam |
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| 339 | IF( med_diag%RR_0500%dgsave ) THEN |
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| 340 | CALL iom_put( "RR_0500" , ffastca2d ) |
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| 341 | ENDIF |
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| 342 | IF( med_diag%SDC__500%dgsave ) THEN |
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| 343 | zw2d(:,:) = fslowcflux(:,:) * tmask(:,:,jk) |
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| 344 | CALL iom_put( "SDC__500" , zw2d ) |
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| 345 | ENDIF |
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| 346 | # endif |
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| 347 | ELSE IF (jk.eq.i1000) THEN |
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| 348 | IF( med_diag%SDT_1000%dgsave ) THEN |
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| 349 | zw2d(:,:) = fslownflux(:,:) * tmask(:,:,jk) |
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| 350 | CALL iom_put( "SDT_1000" , zw2d ) |
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| 351 | ENDIF |
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| 352 | IF( med_diag%REG_1000%dgsave ) THEN |
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| 353 | CALL iom_put( "REG_1000" , fregen2d ) |
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| 354 | ENDIF |
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| 355 | IF( med_diag%FDT_1000%dgsave ) THEN |
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| 356 | CALL iom_put( "FDT_1000" , ffastn ) |
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| 357 | ENDIF |
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| 358 | IF( med_diag%RG_1000F%dgsave ) THEN |
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| 359 | CALL iom_put( "RG_1000F" , fregenfast ) |
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| 360 | ENDIF |
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| 361 | IF( med_diag%FDS_1000%dgsave ) THEN |
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| 362 | CALL iom_put( "FDS_1000" , ffastsi ) |
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| 363 | ENDIF |
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| 364 | IF( med_diag%RGS1000F%dgsave ) THEN |
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| 365 | CALL iom_put( "RGS1000F" , fregenfastsi ) |
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| 366 | ENDIF |
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| 367 | IF( med_diag%FE_1000%dgsave ) THEN |
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| 368 | CALL iom_put( "FE_1000" , xFree ) |
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| 369 | ENDIF |
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| 370 | # if defined key_roam |
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| 371 | IF( med_diag%RR_1000%dgsave ) THEN |
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| 372 | CALL iom_put( "RR_1000" , ffastca2d ) |
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| 373 | DEALLOCATE( ffastca2d ) |
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| 374 | ENDIF |
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| 375 | IF( med_diag%SDC_1000%dgsave ) THEN |
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| 376 | zw2d(:,:) = fslowcflux(:,:) * tmask(:,:,jk) |
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| 377 | CALL iom_put( "SDC_1000" , zw2d ) |
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| 378 | ENDIF |
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| 379 | # endif |
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| 380 | ENDIF |
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| 381 | !! to do on every k loop : |
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| 382 | IF( med_diag%DETFLUX3%dgsave ) THEN |
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| 383 | !! detrital flux |
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| 384 | detflux3d(:,:,jk) = (fslownflux(:,:) + ffastn(:,:)) * tmask(:,:,jk) |
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| 385 | !CALL iom_put( "DETFLUX3" , ftot_n ) |
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| 386 | ENDIF |
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| 387 | # if defined key_roam |
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| 388 | IF( med_diag%EXPC3%dgsave ) THEN |
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| 389 | expc3(:,:,jk) = (fslowcflux(:,:) + ffastc(:,:)) * tmask(:,:,jk) |
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| 390 | ENDIF |
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| 391 | IF( med_diag%EXPN3%dgsave ) THEN |
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| 392 | expn3(:,:,jk) = (fslownflux(:,:) + ffastn(:,:)) * tmask(:,:,jk) |
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| 393 | ENDIF |
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| 394 | # endif |
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| 395 | # if defined key_debug_medusa |
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| 396 | IF (lwp) write (numout,*) 'bio_medusa_diag_slice: end jk = ', jk |
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| 397 | CALL flush(numout) |
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| 398 | # endif |
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| 399 | |
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| 400 | END SUBROUTINE bio_medusa_diag_slice |
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| 401 | |
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| 402 | #else |
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| 403 | !!====================================================================== |
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| 404 | !! Dummy module : No MEDUSA bio-model |
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| 405 | !!====================================================================== |
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| 406 | CONTAINS |
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| 407 | SUBROUTINE bio_medusa_diag_slice( ) ! Empty routine |
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| 408 | WRITE(*,*) 'bio_medusa_diag_slice: You should not have seen this print! error?' |
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| 409 | END SUBROUTINE bio_medusa_diag_slice |
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| 410 | #endif |
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| 411 | |
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| 412 | !!====================================================================== |
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| 413 | END MODULE bio_medusa_diag_slice_mod |
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