| 1 | MODULE bio_medusa_mod |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE bio_medusa_mod *** |
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| 4 | !! MEDUSA variables : module for MEDUSA variables which are shared |
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| 5 | !! across subroutines |
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| 6 | !!====================================================================== |
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| 7 | !! History : |
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| 8 | !! - ! 2017-04 (M. Stringer) Code taken from trcbio_medusa.F90 |
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| 9 | !! - ! 2017-08 (A. Yool) Slow detritus, ML-avg chl variables |
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| 10 | !! - ! 2018-08 (A. Yool) add OMIP preindustrial DIC |
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| 11 | !! - ! 2018-10 (A. Yool) Add air-sea DMS flux |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | #if defined key_medusa |
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| 14 | !!---------------------------------------------------------------------- |
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| 15 | !! 'key_medusa' MEDUSA |
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| 16 | !!---------------------------------------------------------------------- |
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| 17 | !! Variable conventions |
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| 18 | !!---------------------------------------------------------------------- |
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| 19 | !! |
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| 20 | !! names: z*** - state variable |
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| 21 | !! f*** - function (or temporary variable used in part of a function) |
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| 22 | !! b*** - right-hand part (sources and sinks) |
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| 23 | !! i*** - integer variable (usually used in yes/no flags) |
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| 24 | !!---------------------------------------------------------------------- |
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| 25 | USE par_kind, ONLY: wp |
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| 26 | |
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| 27 | USE yomhook, ONLY: lhook, dr_hook |
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| 28 | USE parkind1, ONLY: jprb, jpim |
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| 29 | |
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| 30 | IMPLICIT NONE |
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| 31 | PUBLIC |
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| 32 | |
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| 33 | PUBLIC bio_medusa_alloc ! called by trcini.F90 |
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| 34 | |
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| 35 | !! model state variables |
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| 36 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zchn,zchd,zphn,zphd,zpds,zzmi |
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| 37 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zzme,zdet,zdtc,zdin,zsil,zfer |
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| 38 | # if defined key_roam |
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| 39 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zdic, zalk, zoxy |
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| 40 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ztmp, zsal |
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| 41 | # endif |
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| 42 | # if defined key_mocsy |
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| 43 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zpho |
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| 44 | # endif |
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| 45 | # if defined key_omip_dic |
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| 46 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zomd |
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| 47 | # endif |
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| 48 | |
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| 49 | !! integrated source and sink terms |
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| 50 | REAL(wp) :: b0 |
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| 51 | |
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| 52 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fthetan,fprn,frn |
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| 53 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fthetad,fprd,frd |
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| 54 | |
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| 55 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fjlim_pn,fjlim_pd |
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| 56 | !! AXY (16/07/09): add in Eppley curve functionality |
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| 57 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fun_T,xvpnT,xvpdT |
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| 58 | |
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| 59 | !! AXY (16/05/11): per Katya's prompting, add in new T-dependence |
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| 60 | !! for phytoplankton growth only (i.e. no change |
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| 61 | !! for remineralisation) |
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| 62 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fun_Q10 |
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| 63 | !! AXY (01/03/10): add in mixed layer PP diagnostics |
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| 64 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fprn_ml,fprd_ml |
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| 65 | !! AXY (16/08/17): add in mixed layer chlorophyll diagnostic |
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| 66 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fchl_ml |
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| 67 | !! |
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| 68 | !! nutrient limiting factors |
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| 69 | !! N and Fe (renaming ffln to ffln2 to avoid conflict with |
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| 70 | !! ffln in module sms_medusa - marc 25/4/17) |
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| 71 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fnln,ffln2 |
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| 72 | !! N, Fe and Si |
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| 73 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fnld,ffld,fsld,fsld2 |
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| 74 | !! |
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| 75 | !! silicon cycle |
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| 76 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fsin,fprds,fsdiss |
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| 77 | |
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| 78 | !! iron cycle; includes parameters for Parekh et al. (2005) iron scheme |
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| 79 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffetop,ffebot,ffescav |
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| 80 | !! Variable for iron-ligand system |
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| 81 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: xFree |
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| 82 | |
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| 83 | !! Microzooplankton grazing |
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| 84 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fgmipn,fgmid,fgmidc |
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| 85 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: finmi,ficmi |
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| 86 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fmigrow,fmiexcr,fmiresp |
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| 87 | !! |
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| 88 | !! Mesozooplankton grazing |
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| 89 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fgmepn,fgmepd |
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| 90 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fgmepds,fgmezmi,fgmed,fgmedc |
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| 91 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: finme,ficme |
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| 92 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fmegrow,fmeexcr,fmeresp |
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| 93 | !! |
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| 94 | !! mortality/Remineralisation |
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| 95 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fdpn,fdpd,fdpds,fdzmi,fdzme,fdd |
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| 96 | # if defined key_roam |
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| 97 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fddc |
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| 98 | # endif |
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| 99 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fdpn2,fdpd2,fdpds2,fdzmi2,fdzme2 |
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| 100 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fslown, fslowc |
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| 101 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fslownflux, fslowcflux |
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| 102 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fregen,fregensi |
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| 103 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fregenfast,fregenfastsi |
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| 104 | # if defined key_roam |
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| 105 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fregenfastc |
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| 106 | # endif |
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| 107 | !! |
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| 108 | !! AXY (08/08/17): sinking of detritus moved here |
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| 109 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fslowsink, fslowgain, fslowloss |
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| 110 | # if defined key_roam |
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| 111 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fslowsinkc, fslowgainc, fslowlossc |
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| 112 | # endif |
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| 113 | !! |
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| 114 | !! Particle flux |
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| 115 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fdep1 |
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| 116 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftempn,ftempsi,ftempfe |
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| 117 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftempc,ftempca |
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| 118 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: freminn,freminsi,freminfe |
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| 119 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: freminc,freminca |
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| 120 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffastn,ffastsi,ffastfe |
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| 121 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffastc,ffastca |
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| 122 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fsedn,fsedsi,fsedfe,fsedc,fsedca |
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| 123 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fccd |
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| 124 | |
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| 125 | !! AXY (08/07/11): fate of fast detritus reaching the seafloor |
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| 126 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffast2slown,ffast2slowc |
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| 127 | |
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| 128 | !! water column nutrient and flux integrals |
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| 129 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_n,ftot_si,ftot_fe |
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| 130 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fflx_n,fflx_si,fflx_fe |
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| 131 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fifd_n,fifd_si,fifd_fe |
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| 132 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fofd_n,fofd_si,fofd_fe |
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| 133 | # if defined key_roam |
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| 134 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_c,ftot_a,ftot_o2 |
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| 135 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fflx_c,fflx_a,fflx_o2 |
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| 136 | ! I don't think fifd_a, fifd_o2, fofd_a or fofd_o2 are used - marc 11/5/17 |
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| 137 | ! REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fifd_c,fifd_a,fifd_o2 |
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| 138 | ! REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fofd_c,fofd_a,fofd_o2 |
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| 139 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fifd_c |
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| 140 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fofd_c |
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| 141 | # endif |
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| 142 | |
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| 143 | !! Zooplankton grazing integrals |
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| 144 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fzmi_i,fzmi_o,fzme_i,fzme_o |
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| 145 | |
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| 146 | !! Limitation term temporary variables |
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| 147 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_pn,ftot_pd |
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| 148 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftot_zmi,ftot_zme,ftot_det,ftot_dtc |
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| 149 | |
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| 150 | !! use biological fluxes (1) or not (0) |
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| 151 | INTEGER :: ibio_switch |
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| 152 | !! |
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| 153 | !! diagnose fluxes (should only be used in 1D runs) |
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| 154 | INTEGER :: idf, idfval |
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| 155 | |
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| 156 | !! Nitrogen and silicon production and consumption |
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| 157 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fnit_prod,fnit_cons |
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| 158 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fsil_prod,fsil_cons |
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| 159 | |
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| 160 | # if defined key_roam |
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| 161 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_xco2a |
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| 162 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_ph,f_pco2w,f_h2co3 |
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| 163 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_hco3,f_co3,f_co2flux |
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| 164 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_TDIC,f_TALK,f_dcf,f_henry |
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| 165 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pp0 |
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| 166 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_kw660,f_o2flux,f_o2sat |
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| 167 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_omcal,f_omarg |
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| 168 | |
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| 169 | !! AXY (23/06/15): additional diagnostics for MOCSY and oxygen |
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| 170 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pco2atm |
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| 171 | |
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| 172 | # if defined key_omip_dic |
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| 173 | !! AXY (06/08/18): OMIP PI DIC additions |
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| 174 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_xco2a |
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| 175 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_ph,f_pi_pco2w,f_pi_h2co3 |
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| 176 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_hco3,f_pi_co3,f_pi_co2flux |
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| 177 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_TDIC |
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| 178 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_omcal,f_pi_omarg |
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| 179 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_pco2atm |
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| 180 | # endif |
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| 181 | |
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| 182 | !! Carbon, alkalinity production and consumption |
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| 183 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fcomm_resp |
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| 184 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fcar_prod,fcar_cons |
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| 185 | |
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| 186 | !! Oxygen production and consumption (and non-consumption) |
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| 187 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: foxy_prod,foxy_cons,foxy_anox |
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| 188 | |
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| 189 | !! Add DMS in MEDUSA for UKESM1 model |
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| 190 | REAL(wp) :: dms_surf,dms_andm,dms_flux |
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| 191 | !! AXY (13/03/15): add in other DMS calculations |
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| 192 | REAL(wp) :: dms_andr,dms_simo,dms_aran,dms_hall |
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| 193 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: dms_nlim, dms_wtkn |
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| 194 | # endif |
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| 195 | |
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| 196 | !! Benthic fluxes |
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| 197 | INTEGER :: ibenthic |
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| 198 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_sbenin_n,f_sbenin_fe,f_sbenin_c |
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| 199 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_fbenin_n,f_fbenin_fe,f_fbenin_si |
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| 200 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_fbenin_c,f_fbenin_ca |
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| 201 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_benout_n,f_benout_fe,f_benout_si |
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| 202 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_benout_c,f_benout_ca |
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| 203 | |
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| 204 | !! Benthic fluxes of CaCO3 that shouldn't happen because of lysocline |
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| 205 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_benout_lyso_ca |
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| 206 | |
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| 207 | !! riverine fluxes |
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| 208 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_runoff,f_riv_n,f_riv_si |
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| 209 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_riv_c,f_riv_alk |
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| 210 | !! AXY (19/07/12): variables for local riverine fluxes to handle |
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| 211 | !! inputs below surface |
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| 212 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_riv_loc_n,f_riv_loc_si |
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| 213 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_riv_loc_c, f_riv_loc_alk |
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| 214 | |
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| 215 | !! Jpalm -- 11-10-2015 -- adapt diag to iom_use |
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| 216 | !! 2D var for diagnostics. |
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| 217 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fprn2d, fdpn2d, fprd2d, fdpd2d |
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| 218 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fprds2d, fsdiss2d, fgmipn2d |
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| 219 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fgmid2d, fdzmi2d, fgmepn2d |
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| 220 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fgmepd2d, fgmezmi2d, fgmed2d |
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| 221 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fdzme2d, fslown2d, fdd2d |
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| 222 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffetop2d, ffebot2d, ffescav2d |
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| 223 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fjln2d, fnln2d, ffln2d, fjld2d |
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| 224 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fnld2d, ffld2d, fsld2d2 |
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| 225 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fsld2d, fregen2d, fregensi2d |
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| 226 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftempn2d, ftempsi2d, ftempfe2d |
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| 227 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ftempc2d, ftempca2d, freminn2d |
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| 228 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: freminsi2d, freminfe2d |
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| 229 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: freminc2d, freminca2d |
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| 230 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zw2d |
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| 231 | # if defined key_roam |
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| 232 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ffastca2d, rivn2d, rivsi2d |
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| 233 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: rivc2d, rivalk2d, fslowc2d |
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| 234 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fdpn22d, fdpd22d, fdzmi22d |
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| 235 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fdzme22d, zimesn2d, zimesd2d |
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| 236 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zimesc2d, zimesdc2d, ziexcr2d |
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| 237 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: ziresp2d, zigrow2d, zemesn2d |
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| 238 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zemesd2d, zemesc2d, zemesdc2d |
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| 239 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: zeexcr2d, zeresp2d, zegrow2d |
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| 240 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: mdetc2d, gmidc2d, gmedc2d |
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| 241 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pco2a2d, f_pco2w2d, f_co2flux2d |
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| 242 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_TDIC2d, f_TALK2d, f_kw6602d |
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| 243 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pp02d, f_o2flux2d, f_o2sat2d |
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| 244 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: dms_andr2d, dms_simo2d, dms_aran2d |
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| 245 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: dms_hall2d, dms_andm2d, dms_surf2d |
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| 246 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: dms_flux2d |
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| 247 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: iben_n2d, iben_fe2d, iben_c2d |
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| 248 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: iben_si2d, iben_ca2d, oben_n2d |
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| 249 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: oben_fe2d, oben_c2d, oben_si2d |
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| 250 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: oben_ca2d, sfr_ocal2d |
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| 251 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: sfr_oarg2d, lyso_ca2d |
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| 252 | !! AXY (23/11/16): extra MOCSY diagnostics |
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| 253 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_xco2a_2d, f_fco2w_2d, f_fco2a_2d |
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| 254 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_ocnrhosw_2d, f_ocnschco2_2d |
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| 255 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_ocnkwco2_2d |
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| 256 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_ocnk0_2d, f_co2starair_2d |
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| 257 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_ocndpco2_2d |
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| 258 | # if defined key_omip_dic |
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| 259 | !! AXY (06/08/18): OMIP PI DIC additions |
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| 260 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_xco2a_2d, f_pi_fco2w_2d, f_pi_fco2a_2d |
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| 261 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_co2starair_2d |
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| 262 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_ocndpco2_2d |
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| 263 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_pco2a_2d, f_pi_pco2w_2d, f_pi_co2flux_2d |
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| 264 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_TDIC_2d |
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| 265 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_ph_2d, f_pi_omcal_2d, f_pi_omarg_2d |
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| 266 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: f_pi_h2co3_2d, f_pi_hco3_2d, f_pi_co3_2d |
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| 267 | # endif |
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| 268 | # endif |
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| 269 | !! |
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| 270 | !! 3D var for diagnostics. |
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| 271 | REAL(wp), POINTER, DIMENSION(:,:,:) :: tpp3d, detflux3d, remin3dn |
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| 272 | !! |
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| 273 | # if defined key_roam |
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| 274 | !! AXY (04/11/16) |
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| 275 | !! 2D var for new CMIP6 diagnostics (behind a key_roam ifdef |
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| 276 | !! for simplicity) |
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| 277 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fgco2,intdissic,intdissin |
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| 278 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: intdissisi,inttalk,o2min,zo2min |
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| 279 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fbddtalk,fbddtdic,fbddtdife |
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| 280 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: fbddtdin,fbddtdisi |
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| 281 | # if defined key_omip_dic |
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| 282 | REAL(wp), ALLOCATABLE, DIMENSION(:,:) :: pi_fgco2 |
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| 283 | # endif |
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| 284 | !! |
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| 285 | !! 3D var for new CMIP6 diagnostics |
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| 286 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: tppd3 |
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| 287 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: bddtalk3,bddtdic3,bddtdife3 |
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| 288 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: bddtdin3, bddtdisi3 |
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| 289 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: fd_nit3,fd_sil3,fd_car3,fd_cal3 |
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| 290 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: co33,co3satarag3 |
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| 291 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: co3satcalc3,dcalc3 |
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| 292 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: expc3,expn3 |
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| 293 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: fediss3,fescav3 |
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| 294 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: migrazp3,migrazd3,megrazp3 |
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| 295 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: megrazd3, megrazz3 |
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| 296 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: o2sat3,pbsi3,pcal3,remoc3 |
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| 297 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: pnlimj3,pnlimn3,pnlimfe3 |
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| 298 | REAL(wp), ALLOCATABLE, DIMENSION(:,:,:) :: pdlimj3,pdlimn3,pdlimfe3,pdlimsi3 |
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| 299 | # endif |
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| 300 | !!---------------------------------------------------------------------- |
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| 301 | !! NEMO/TOP 3.3.1 , NEMO Consortium (2010) |
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| 302 | !! $Id$ |
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| 303 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 304 | !!---------------------------------------------------------------------- |
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| 305 | CONTAINS |
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| 306 | |
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| 307 | INTEGER FUNCTION bio_medusa_alloc() |
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| 308 | !!------------------------------------------------------------------- |
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| 309 | !! *** ROUTINE bio_medusa_alloc *** |
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| 310 | !!------------------------------------------------------------------- |
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| 311 | USE lib_mpp, ONLY: ctl_warn |
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| 312 | USE par_oce, ONLY: jpi, jpj |
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| 313 | INTEGER(KIND=jpim), PARAMETER :: zhook_in = 0 |
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| 314 | INTEGER(KIND=jpim), PARAMETER :: zhook_out = 1 |
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| 315 | REAL(KIND=jprb) :: zhook_handle |
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| 316 | |
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| 317 | CHARACTER(LEN=*), PARAMETER :: RoutineName='BIO_MEDUSA_ALLOC' |
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| 318 | |
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| 319 | IF (lhook) CALL dr_hook(RoutineName,zhook_in,zhook_handle) |
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| 320 | |
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| 321 | !!------------------------------------------------------------------- |
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| 322 | ! |
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| 323 | ALLOCATE(zchn(jpi,jpj),zchd(jpi,jpj),zphn(jpi,jpj), & |
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| 324 | zphd(jpi,jpj),zpds(jpi,jpj),zzmi(jpi,jpj), & |
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| 325 | zzme(jpi,jpj),zdet(jpi,jpj),zdtc(jpi,jpj), & |
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| 326 | zdin(jpi,jpj),zsil(jpi,jpj),zfer(jpi,jpj), & |
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| 327 | # if defined key_roam |
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| 328 | zdic(jpi,jpj),zalk(jpi,jpj),zoxy(jpi,jpj), & |
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| 329 | ztmp(jpi,jpj),zsal(jpi,jpj), & |
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| 330 | # endif |
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| 331 | # if defined key_mocsy |
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| 332 | zpho(jpi,jpj), & |
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| 333 | # endif |
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| 334 | # if defined key_omip_dic |
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| 335 | zomd(jpi,jpj), & |
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| 336 | # endif |
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| 337 | fthetan(jpi,jpj),fprn(jpi,jpj),frn(jpi,jpj), & |
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| 338 | fthetad(jpi,jpj),fprd(jpi,jpj),frd(jpi,jpj), & |
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| 339 | fjlim_pn(jpi,jpj),fjlim_pd(jpi,jpj), & |
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| 340 | fun_T(jpi,jpj),fun_Q10(jpi,jpj), & |
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| 341 | fprn_ml(jpi,jpj),fprd_ml(jpi,jpj),fchl_ml(jpi,jpj), & |
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| 342 | fnln(jpi,jpj),ffln2(jpi,jpj), & |
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| 343 | fnld(jpi,jpj),ffld(jpi,jpj),fsld(jpi,jpj), & |
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| 344 | fsld2(jpi,jpj), & |
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| 345 | fsin(jpi,jpj),fprds(jpi,jpj),fsdiss(jpi,jpj), & |
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| 346 | ffetop(jpi,jpj),ffebot(jpi,jpj),ffescav(jpi,jpj), & |
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| 347 | xFree(jpi,jpj), & |
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| 348 | fgmipn(jpi,jpj),fgmid(jpi,jpj),fgmidc(jpi,jpj), & |
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| 349 | finmi(jpi,jpj),ficmi(jpi,jpj), & |
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| 350 | fmigrow(jpi,jpj),fmiexcr(jpi,jpj),fmiresp(jpi,jpj), & |
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| 351 | fgmepn(jpi,jpj),fgmepd(jpi,jpj), & |
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| 352 | fgmepds(jpi,jpj),fgmezmi(jpi,jpj),fgmed(jpi,jpj), & |
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| 353 | fgmedc(jpi,jpj), & |
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| 354 | finme(jpi,jpj),ficme(jpi,jpj), & |
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| 355 | fmegrow(jpi,jpj),fmeexcr(jpi,jpj),fmeresp(jpi,jpj), & |
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| 356 | fdpn(jpi,jpj),fdpd(jpi,jpj),fdpds(jpi,jpj), & |
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| 357 | fdzmi(jpi,jpj),fdzme(jpi,jpj),fdd(jpi,jpj), & |
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| 358 | # if defined key_roam |
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| 359 | fddc(jpi,jpj), & |
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| 360 | # endif |
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| 361 | fdpn2(jpi,jpj),fdpd2(jpi,jpj),fdpds2(jpi,jpj), & |
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| 362 | fdzmi2(jpi,jpj),fdzme2(jpi,jpj), & |
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| 363 | fslown(jpi,jpj),fslowc(jpi,jpj), & |
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| 364 | fslownflux(jpi,jpj),fslowcflux(jpi,jpj), & |
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| 365 | fregen(jpi,jpj),fregensi(jpi,jpj), & |
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| 366 | fregenfast(jpi,jpj),fregenfastsi(jpi,jpj), & |
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| 367 | # if defined key_roam |
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| 368 | fregenfastc(jpi,jpj), & |
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| 369 | # endif |
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| 370 | fslowsink(jpi,jpj),fslowgain(jpi,jpj), & |
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| 371 | fslowloss(jpi,jpj), & |
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| 372 | # if defined key_roam |
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| 373 | fslowsinkc(jpi,jpj),fslowgainc(jpi,jpj), & |
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| 374 | fslowlossc(jpi,jpj), & |
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| 375 | # endif |
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| 376 | fdep1(jpi,jpj), & |
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| 377 | ftempn(jpi,jpj),ftempsi(jpi,jpj),ftempfe(jpi,jpj), & |
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| 378 | ftempc(jpi,jpj),ftempca(jpi,jpj), & |
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| 379 | freminn(jpi,jpj),freminsi(jpi,jpj),freminfe(jpi,jpj), & |
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| 380 | freminc(jpi,jpj),freminca(jpi,jpj), & |
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| 381 | ffastn(jpi,jpj),ffastsi(jpi,jpj),ffastfe(jpi,jpj), & |
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| 382 | ffastc(jpi,jpj),ffastca(jpi,jpj), & |
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| 383 | fsedn(jpi,jpj),fsedsi(jpi,jpj),fsedfe(jpi,jpj), & |
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| 384 | fsedc(jpi,jpj),fsedca(jpi,jpj), & |
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| 385 | fccd(jpi,jpj), & |
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| 386 | ffast2slown(jpi,jpj),ffast2slowc(jpi,jpj), & |
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| 387 | ftot_n(jpi,jpj),ftot_si(jpi,jpj),ftot_fe(jpi,jpj), & |
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| 388 | fflx_n(jpi,jpj),fflx_si(jpi,jpj),fflx_fe(jpi,jpj), & |
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| 389 | fifd_n(jpi,jpj),fifd_si(jpi,jpj),fifd_fe(jpi,jpj), & |
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| 390 | fofd_n(jpi,jpj),fofd_si(jpi,jpj),fofd_fe(jpi,jpj), & |
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| 391 | # if defined key_roam |
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| 392 | ftot_c(jpi,jpj),ftot_a(jpi,jpj),ftot_o2(jpi,jpj), & |
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| 393 | fflx_c(jpi,jpj),fflx_a(jpi,jpj),fflx_o2(jpi,jpj), & |
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| 394 | ! I don't think fifd_a, fifd_o2, fofd_a or fofd_o2 are used - marc 11/5/17 |
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| 395 | ! fifd_c(jpi,jpj),fifd_a(jpi,jpj),fifd_o2(jpi,jpj), & |
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| 396 | ! fofd_c(jpi,jpj),fofd_a(jpi,jpj),fofd_o2(jpi,jpj), & |
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| 397 | fifd_c(jpi,jpj), fofd_c(jpi,jpj), & |
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| 398 | # endif |
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| 399 | fzmi_i(jpi,jpj),fzmi_o(jpi,jpj),fzme_i(jpi,jpj), & |
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| 400 | fzme_o(jpi,jpj), & |
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| 401 | ftot_pn(jpi,jpj),ftot_pd(jpi,jpj), & |
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| 402 | ftot_zmi(jpi,jpj),ftot_zme(jpi,jpj),ftot_det(jpi,jpj), & |
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| 403 | ftot_dtc(jpi,jpj), & |
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| 404 | fnit_prod(jpi,jpj),fnit_cons(jpi,jpj), & |
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| 405 | fsil_prod(jpi,jpj),fsil_cons(jpi,jpj), & |
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| 406 | # if defined key_roam |
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| 407 | f_xco2a(jpi,jpj), & |
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| 408 | f_ph(jpi,jpj),f_pco2w(jpi,jpj),f_h2co3(jpi,jpj), & |
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| 409 | f_hco3(jpi,jpj),f_co3(jpi,jpj),f_co2flux(jpi,jpj), & |
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| 410 | f_TDIC(jpi,jpj),f_TALK(jpi,jpj),f_dcf(jpi,jpj), & |
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| 411 | f_henry(jpi,jpj), & |
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| 412 | f_pp0(jpi,jpj), & |
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| 413 | f_kw660(jpi,jpj),f_o2flux(jpi,jpj),f_o2sat(jpi,jpj), & |
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| 414 | f_omcal(jpi,jpj),f_omarg(jpi,jpj), & |
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| 415 | f_pco2atm(jpi,jpj), & |
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| 416 | # if defined key_omip_dic |
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| 417 | f_pi_xco2a(jpi,jpj), & |
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| 418 | f_pi_ph(jpi,jpj),f_pi_pco2w(jpi,jpj),f_pi_h2co3(jpi,jpj), & |
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| 419 | f_pi_hco3(jpi,jpj),f_pi_co3(jpi,jpj),f_pi_co2flux(jpi,jpj), & |
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| 420 | f_pi_TDIC(jpi,jpj), & |
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| 421 | f_pi_omcal(jpi,jpj),f_pi_omarg(jpi,jpj), & |
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| 422 | f_pi_pco2atm(jpi,jpj), & |
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| 423 | # endif |
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| 424 | fcomm_resp(jpi,jpj), & |
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| 425 | fcar_prod(jpi,jpj),fcar_cons(jpi,jpj), & |
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| 426 | foxy_prod(jpi,jpj), foxy_cons(jpi,jpj), & |
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| 427 | foxy_anox(jpi,jpj), & |
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| 428 | dms_nlim(jpi,jpj),dms_wtkn(jpi,jpj), & |
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| 429 | # endif |
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| 430 | f_sbenin_n(jpi,jpj),f_sbenin_fe(jpi,jpj), & |
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| 431 | f_sbenin_c(jpi,jpj), & |
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| 432 | f_fbenin_n(jpi,jpj),f_fbenin_fe(jpi,jpj), & |
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| 433 | f_fbenin_si(jpi,jpj), & |
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| 434 | f_fbenin_c(jpi,jpj),f_fbenin_ca(jpi,jpj), & |
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| 435 | f_benout_n(jpi,jpj),f_benout_fe(jpi,jpj), & |
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| 436 | f_benout_si(jpi,jpj), & |
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| 437 | f_benout_c(jpi,jpj),f_benout_ca(jpi,jpj), & |
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| 438 | f_benout_lyso_ca(jpi,jpj), & |
|---|
| 439 | f_runoff(jpi,jpj),f_riv_n(jpi,jpj),f_riv_si(jpi,jpj), & |
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| 440 | f_riv_c(jpi,jpj),f_riv_alk(jpi,jpj), & |
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| 441 | f_riv_loc_n(jpi,jpj),f_riv_loc_si(jpi,jpj), & |
|---|
| 442 | f_riv_loc_c(jpi,jpj),f_riv_loc_alk(jpi,jpj), & |
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| 443 | STAT = bio_medusa_alloc) |
|---|
| 444 | |
|---|
| 445 | !! Check that allocation was successful |
|---|
| 446 | IF ( bio_medusa_alloc /= 0 ) THEN |
|---|
| 447 | CALL ctl_warn('bio_medusa_alloc: failed to allocate arrays') |
|---|
| 448 | END IF |
|---|
| 449 | |
|---|
| 450 | IF (lhook) CALL dr_hook(RoutineName,zhook_out,zhook_handle) |
|---|
| 451 | END FUNCTION bio_medusa_alloc |
|---|
| 452 | |
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| 453 | #else |
|---|
| 454 | !!---------------------------------------------------------------------- |
|---|
| 455 | !! Empty module : No MEDUSA |
|---|
| 456 | !!---------------------------------------------------------------------- |
|---|
| 457 | #endif |
|---|
| 458 | |
|---|
| 459 | !!====================================================================== |
|---|
| 460 | END MODULE bio_medusa_mod |
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