| 1 | MODULE trcbio_medusa |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE trcbio *** |
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| 4 | !! TOP : MEDUSA |
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| 5 | !!====================================================================== |
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| 6 | !! History : |
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| 7 | !! - ! 1999-07 (M. Levy) original code |
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| 8 | !! - ! 2000-12 (E. Kestenare) assign parameters to name individual tracers |
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| 9 | !! - ! 2001-03 (M. Levy) LNO3 + dia2d |
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| 10 | !! 2.0 ! 2007-12 (C. Deltel, G. Madec) F90 |
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| 11 | !! - ! 2008-08 (K. Popova) adaptation for MEDUSA |
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| 12 | !! - ! 2008-11 (A. Yool) continuing adaptation for MEDUSA |
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| 13 | !! - ! 2010-03 (A. Yool) updated for branch inclusion |
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| 14 | !! - ! 2011-08 (A. Yool) updated for ROAM (see below) |
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| 15 | !! - ! 2013-03 (A. Yool) updated for iMARNET |
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| 16 | !! - ! 2013-05 (A. Yool) updated for v3.5 |
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| 17 | !! - ! 2014-08 (A. Yool, J. Palm) Add DMS module for UKESM1 model |
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| 18 | !! - ! 2015-06 (A. Yool) Update to include MOCSY |
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| 19 | !! - ! 2015-07 (A. Yool) Update for rolling averages |
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| 20 | !! - ! 2015-10 (J. Palm) Update for diag outputs through iom_use |
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| 21 | !! - ! 2016-11 (A. Yool) Updated diags for CMIP6 |
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| 22 | !!---------------------------------------------------------------------- |
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| 23 | !! |
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| 24 | #if defined key_roam |
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| 25 | !!---------------------------------------------------------------------- |
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| 26 | !! Updates for the ROAM project include: |
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| 27 | !! - addition of DIC, alkalinity, detrital carbon and oxygen tracers |
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| 28 | !! - addition of air-sea fluxes of CO2 and oxygen |
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| 29 | !! - periodic (monthly) calculation of full 3D carbonate chemistry |
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| 30 | !! - detrital C:N ratio now free to evolve dynamically |
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| 31 | !! - benthic storage pools |
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| 32 | !! |
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| 33 | !! Opportunity also taken to add functionality: |
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| 34 | !! - switch for Liebig Law (= most-limiting) nutrient uptake |
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| 35 | !! - switch for accelerated seafloor detritus remineralisation |
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| 36 | !! - switch for fast -> slow detritus transfer at seafloor |
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| 37 | !! - switch for ballast vs. Martin vs. Henson fast detritus remin. |
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| 38 | !! - per GMD referee remarks, xfdfrac3 introduced for grazed PDS |
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| 39 | !!---------------------------------------------------------------------- |
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| 40 | #endif |
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| 41 | !! |
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| 42 | #if defined key_mocsy |
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| 43 | !!---------------------------------------------------------------------- |
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| 44 | !! Updates with the addition of MOCSY include: |
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| 45 | !! - option to use PML or MOCSY carbonate chemistry (the latter is |
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| 46 | !! preferred) |
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| 47 | !! - central calculation of gas transfer velocity, f_kw660; previously |
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| 48 | !! this was done separately for CO2 and O2 with predictable results |
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| 49 | !! - distribution of f_kw660 to both PML and MOCSY CO2 air-sea flux |
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| 50 | !! calculations and to those for O2 air-sea flux |
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| 51 | !! - extra diagnostics included for MOCSY |
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| 52 | !!---------------------------------------------------------------------- |
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| 53 | #endif |
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| 54 | !! |
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| 55 | #if defined key_medusa |
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| 56 | !!---------------------------------------------------------------------- |
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| 57 | !! MEDUSA bio-model |
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| 58 | !!---------------------------------------------------------------------- |
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| 59 | !! trc_bio_medusa : |
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| 60 | !!---------------------------------------------------------------------- |
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| 61 | USE oce_trc |
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| 62 | USE trc |
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| 63 | USE sms_medusa |
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| 64 | USE lbclnk |
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| 65 | USE prtctl_trc ! Print control for debugging |
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| 66 | USE trcsed_medusa |
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| 67 | USE sbc_oce ! surface forcing |
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| 68 | USE sbcrnf ! surface boundary condition: runoff variables |
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| 69 | USE in_out_manager ! I/O manager |
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| 70 | # if defined key_iomput |
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| 71 | USE iom |
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| 72 | USE trcnam_medusa ! JPALM 13-11-2015 -- if iom_use for diag |
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| 73 | !!USE trc_nam_iom_medusa ! JPALM 13-11-2015 -- if iom_use for diag |
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| 74 | # endif |
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| 75 | # if defined key_roam |
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| 76 | USE gastransfer |
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| 77 | # if defined key_mocsy |
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| 78 | USE mocsy_wrapper |
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| 79 | # else |
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| 80 | USE trcco2_medusa |
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| 81 | # endif |
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| 82 | USE trcoxy_medusa |
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| 83 | !! Jpalm (08/08/2014) |
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| 84 | USE trcdms_medusa |
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| 85 | # endif |
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| 86 | !! AXY (18/01/12): brought in for benthic timestepping |
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| 87 | USE trcnam_trp ! AXY (24/05/2013) |
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| 88 | USE trdmxl_trc |
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| 89 | USE trdtrc_oce ! AXY (24/05/2013) |
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| 90 | |
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| 91 | !! AXY (30/01/14): necessary to find NaNs on HECTOR |
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| 92 | USE, INTRINSIC :: ieee_arithmetic |
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| 93 | |
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| 94 | !! JPALM (27-06-2016): add lk_oasis for CO2 and DMS coupling with atm |
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| 95 | USE sbc_oce, ONLY: lk_oasis |
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| 96 | USE oce, ONLY: CO2Flux_out_cpl, DMS_out_cpl, & |
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| 97 | PCO2a_in_cpl |
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| 98 | USE bio_medusa_mod |
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| 99 | USE bio_medusa_init_mod, ONLY: bio_medusa_init |
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| 100 | USE carb_chem_mod, ONLY: carb_chem |
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| 101 | USE air_sea_mod, ONLY: air_sea |
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| 102 | USE plankton_mod, ONLY: plankton |
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| 103 | USE iron_chem_scav_mod, ONLY: iron_chem_scav |
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| 104 | USE detritus_mod, ONLY: detritus |
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| 105 | USE bio_medusa_diag_slice_mod, ONLY: bio_medusa_diag_slice |
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| 106 | USE bio_medusa_fin_mod, ONLY: bio_medusa_fin |
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| 107 | |
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| 108 | IMPLICIT NONE |
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| 109 | PRIVATE |
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| 110 | |
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| 111 | PUBLIC trc_bio_medusa ! called in trcsms_medusa.F90 |
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| 112 | |
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| 113 | !!* Substitution |
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| 114 | # include "domzgr_substitute.h90" |
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| 115 | !!---------------------------------------------------------------------- |
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| 116 | !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) |
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| 117 | !! $Id$ |
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| 118 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
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| 119 | !!---------------------------------------------------------------------- |
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| 120 | |
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| 121 | CONTAINS |
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| 122 | |
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| 123 | SUBROUTINE trc_bio_medusa( kt ) |
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| 124 | !!--------------------------------------------------------------------- |
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| 125 | !! *** ROUTINE trc_bio *** |
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| 126 | !! |
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| 127 | !! ** Purpose : compute the now trend due to biogeochemical processes |
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| 128 | !! and add it to the general trend of passive tracers equations |
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| 129 | !! |
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| 130 | !! ** Method : each now biological flux is calculated in function of now |
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| 131 | !! concentrations of tracers. |
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| 132 | !! depending on the tracer, these fluxes are sources or sinks. |
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| 133 | !! the total of the sources and sinks for each tracer |
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| 134 | !! is added to the general trend. |
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| 135 | !! |
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| 136 | !! tra = tra + zf...tra - zftra... |
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| 137 | !! | | |
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| 138 | !! | | |
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| 139 | !! source sink |
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| 140 | !! |
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| 141 | !! IF 'key_trc_diabio' defined , the biogeochemical trends |
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| 142 | !! for passive tracers are saved for futher diagnostics. |
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| 143 | !!--------------------------------------------------------------------- |
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| 144 | !! |
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| 145 | !! |
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| 146 | !!---------------------------------------------------------------------- |
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| 147 | !! Variable conventions |
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| 148 | !!---------------------------------------------------------------------- |
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| 149 | !! |
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| 150 | !! names: z*** - state variable |
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| 151 | !! f*** - function (or temporary variable used in part of a function) |
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| 152 | !! x*** - parameter |
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| 153 | !! b*** - right-hand part (sources and sinks) |
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| 154 | !! i*** - integer variable (usually used in yes/no flags) |
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| 155 | !! |
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| 156 | !! time (integer timestep) |
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| 157 | INTEGER, INTENT( in ) :: kt |
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| 158 | !! |
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| 159 | !! spatial array indices |
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| 160 | INTEGER :: ji,jj,jk,jn |
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| 161 | !! |
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| 162 | !! AXY (27/07/10): add in indices for depth horizons (for sinking flux |
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| 163 | !! and seafloor iron inputs) |
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| 164 | !! INTEGER :: i0100, i0200, i0500, i1000, i1100 |
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| 165 | !! |
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| 166 | !! model state variables |
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| 167 | ! REAL(wp), DIMENSION(jpi,jpj) :: zchn,zchd,zphn,zphd,zpds,zzmi |
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| 168 | ! REAL(wp), DIMENSION(jpi,jpj) :: zzme,zdet,zdtc,zdin,zsil,zfer |
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| 169 | ! zage doesn't seem to be used - marc 19/4/17 |
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| 170 | ! REAL(wp) :: zage |
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| 171 | !# if defined key_roam |
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| 172 | ! REAL(wp), DIMENSION(jpi,jpj) :: zdic, zalk, zoxy |
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| 173 | ! REAL(wp), DIMENSION(jpi,jpj) :: ztmp, zsal |
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| 174 | !# endif |
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| 175 | !# if defined key_mocsy |
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| 176 | ! REAL(wp), DIMENSION(jpi,jpj) :: zpho |
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| 177 | !# endif |
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| 178 | !! |
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| 179 | !! integrated source and sink terms |
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| 180 | ! REAL(wp) :: b0 |
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| 181 | !! AXY (23/08/13): changed from individual variables for each flux to |
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| 182 | !! an array that holds all fluxes |
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| 183 | REAL(wp), DIMENSION(jpi,jpj,jp_medusa) :: btra |
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| 184 | !! |
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| 185 | !! primary production and chl related quantities |
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| 186 | ! REAL(wp), DIMENSION(jpi,jpj) :: fthetan,faln,fchn1,fchn,fjln,fprn,frn |
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| 187 | ! REAL(wp), DIMENSION(jpi,jpj) :: fthetad,fald,fchd1,fchd,fjld,fprd,frd |
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| 188 | !! AXY (23/11/16): add in light-only limitation term (normalised 0-1 range) |
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| 189 | ! REAL(wp), DIMENSION(jpi,jpj) :: fjlim_pn, fjlim_pd |
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| 190 | !! AXY (03/02/11): add in Liebig terms |
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| 191 | ! REAL(wp), DIMENSION(jpi,jpj) :: fpnlim, fpdlim |
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| 192 | !! AXY (16/07/09): add in Eppley curve functionality |
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| 193 | ! REAL(wp), DIMENSION(jpi,jpj) :: fun_T,xvpnT,xvpdT |
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| 194 | INTEGER :: ieppley |
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| 195 | !! AXY (16/05/11): per Katya's prompting, add in new T-dependence |
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| 196 | !! for phytoplankton growth only (i.e. no change |
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| 197 | !! for remineralisation) |
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| 198 | ! REAL(wp), DIMENSION(jpi,jpj) :: fun_Q10 |
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| 199 | !! AXY (01/03/10): add in mixed layer PP diagnostics |
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| 200 | ! REAL(wp), DIMENSION(jpi,jpj) :: fprn_ml,fprd_ml |
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| 201 | !! |
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| 202 | !! nutrient limiting factors |
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| 203 | ! REAL(wp), DIMENSION(jpi,jpj) :: fnln,ffln2 !! N and Fe |
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| 204 | ! REAL(wp), DIMENSION(jpi,jpj) :: fnld,ffld,fsld,fsld2 !! N, Fe and Si |
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| 205 | !! |
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| 206 | !! silicon cycle |
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| 207 | ! REAL(wp), DIMENSION(jpi,jpj) :: fsin,fnsi,fprds,fsdiss |
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| 208 | REAL(wp) :: fsin1,fnsi1,fnsi2 |
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| 209 | !! |
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| 210 | !! iron cycle; includes parameters for Parekh et al. (2005) iron scheme |
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| 211 | ! REAL(wp), DIMENSION(jpi,jpj) :: ffetop,ffebot,ffescav |
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| 212 | REAL(wp) :: xLgF, xFeT, xFeF, xFeL !! state variables for iron-ligand system |
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| 213 | ! REAL(wp), DIMENSION(jpi,jpj) :: xFree !! state variables for iron-ligand system |
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| 214 | REAL(wp) :: xb_coef_tmp, xb2M4ac !! iron-ligand parameters |
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| 215 | REAL(wp) :: xmaxFeF,fdeltaFe !! max Fe' parameters |
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| 216 | !! |
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| 217 | !! local parameters for Moore et al. (2004) alternative scavenging scheme |
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| 218 | REAL(wp) :: fbase_scav,fscal_sink,fscal_part,fscal_scav |
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| 219 | !! |
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| 220 | !! local parameters for Moore et al. (2008) alternative scavenging scheme |
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| 221 | REAL(wp) :: fscal_csink,fscal_sisink,fscal_casink |
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| 222 | !! |
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| 223 | !! local parameters for Galbraith et al. (2010) alternative scavenging scheme |
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| 224 | REAL(wp) :: xCscav1, xCscav2, xk_org, xORGscav !! organic portion of scavenging |
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| 225 | REAL(wp) :: xk_inorg, xINORGscav !! inorganic portion of scavenging |
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| 226 | !! |
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| 227 | !! microzooplankton grazing |
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| 228 | ! REAL(wp), DIMENSION(jpi,jpj) :: fmi1,fmi,fgmipn,fgmid,fgmidc |
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| 229 | ! REAL(wp), DIMENSION(jpi,jpj) :: finmi,ficmi,fstarmi,fmith,fmigrow,fmiexcr,fmiresp |
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| 230 | !! |
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| 231 | !! mesozooplankton grazing |
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| 232 | ! REAL(wp), DIMENSION(jpi,jpj) :: fme1,fme,fgmepn,fgmepd,fgmepds,fgmezmi,fgmed,fgmedc |
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| 233 | ! REAL(wp), DIMENSION(jpi,jpj) :: finme,ficme,fstarme,fmeth,fmegrow,fmeexcr,fmeresp |
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| 234 | !! |
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| 235 | !! mortality/Remineralisation (defunct parameter "fz" removed) |
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| 236 | ! REAL(wp), DIMENSION(jpi,jpj) :: fdpn,fdpd,fdpds,fdzmi,fdzme,fdd |
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| 237 | # if defined key_roam |
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| 238 | ! REAL(wp), DIMENSION(jpi,jpj) :: fddc |
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| 239 | # endif |
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| 240 | ! REAL(wp), DIMENSION(jpi,jpj) :: fdpn2,fdpd2,fdpds2,fdzmi2,fdzme2 |
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| 241 | ! REAL(wp), DIMENSION(jpi,jpj) :: fslown, fslowc |
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| 242 | ! REAL(wp), DIMENSION(jpi,jpj) :: fslownflux, fslowcflux |
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| 243 | REAL(wp), DIMENSION(jpi,jpj) :: fregen,fregensi |
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| 244 | ! REAL(wp), DIMENSION(jpi,jpj) :: fregenfast,fregenfastsi |
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| 245 | # if defined key_roam |
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| 246 | !! Doesn't look like this is used - marc 10/4/17 |
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| 247 | !! REAL(wp), DIMENSION(jpi,jpj) :: fregenc |
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| 248 | ! REAL(wp), DIMENSION(jpi,jpj) :: fregenfastc |
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| 249 | # endif |
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| 250 | !! |
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| 251 | !! particle flux |
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| 252 | ! REAL(WP), DIMENSION(jpi,jpj) :: fdep1,fcaco3 |
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| 253 | ! REAL(WP), DIMENSION(jpi,jpj) :: ftempn,ftempsi,ftempfe,ftempc,ftempca |
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| 254 | ! REAL(wp), DIMENSION(jpi,jpj) :: freminn,freminsi,freminfe,freminc,freminca |
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| 255 | ! REAL(wp), DIMENSION(jpi,jpj) :: ffastn,ffastsi,ffastfe,ffastc,ffastca |
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| 256 | ! REAL(wp), DIMENSION(jpi,jpj) :: fprotf |
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| 257 | ! REAL(wp), DIMENSION(jpi,jpj) :: fsedn,fsedsi,fsedfe,fsedc,fsedca |
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| 258 | ! REAL(wp), DIMENSION(jpi,jpj) :: fccd |
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| 259 | ! REAL(wp), DIMENSION(jpi,jpj) :: fccd_dep |
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| 260 | !! |
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| 261 | !! AXY (06/07/11): alternative fast detritus schemes |
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| 262 | REAL(wp) :: fb_val, fl_sst |
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| 263 | !! |
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| 264 | !! AXY (08/07/11): fate of fast detritus reaching the seafloor |
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| 265 | ! I don't think ffast2slowfe is used - marc 10/4/17 |
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| 266 | ! REAL(wp), DIMENSION(jpi,jpj) :: ffast2slown,ffast2slowfe,ffast2slowc |
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| 267 | ! REAL(wp), DIMENSION(jpi,jpj) :: ffast2slown,ffast2slowc |
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| 268 | !! |
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| 269 | !! conservation law |
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| 270 | REAL(wp) :: fnit0,fsil0,ffer0 |
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| 271 | # if defined key_roam |
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| 272 | REAL(wp) :: fcar0,falk0,foxy0 |
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| 273 | # endif |
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| 274 | !! |
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| 275 | !! temporary variables |
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| 276 | REAL(wp) :: fq0,fq1,fq2,fq3,fq4,fq5,fq6,fq7,fq8,fq9 |
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| 277 | !! |
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| 278 | !! water column nutrient and flux integrals |
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| 279 | ! REAL(wp), DIMENSION(jpi,jpj) :: ftot_n,ftot_si,ftot_fe |
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| 280 | ! REAL(wp), DIMENSION(jpi,jpj) :: fflx_n,fflx_si,fflx_fe |
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| 281 | ! REAL(wp), DIMENSION(jpi,jpj) :: fifd_n,fifd_si,fifd_fe |
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| 282 | ! REAL(wp), DIMENSION(jpi,jpj) :: fofd_n,fofd_si,fofd_fe |
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| 283 | # if defined key_roam |
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| 284 | ! REAL(wp), DIMENSION(jpi,jpj) :: ftot_c,ftot_a,ftot_o2 |
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| 285 | ! REAL(wp), DIMENSION(jpi,jpj) :: fflx_c,fflx_a,fflx_o2 |
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| 286 | ! REAL(wp), DIMENSION(jpi,jpj) :: fifd_c,fifd_a,fifd_o2 |
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| 287 | ! REAL(wp), DIMENSION(jpi,jpj) :: fofd_c,fofd_a,fofd_o2 |
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| 288 | # endif |
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| 289 | !! |
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| 290 | !! zooplankton grazing integrals |
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| 291 | ! REAL(wp), DIMENSION(jpi,jpj) :: fzmi_i,fzmi_o,fzme_i,fzme_o |
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| 292 | !! |
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| 293 | !! limitation term temporary variables |
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| 294 | ! REAL(wp), DIMENSION(jpi,jpj) :: ftot_pn,ftot_pd |
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| 295 | ! REAL(wp), DIMENSION(jpi,jpj) :: ftot_zmi,ftot_zme,ftot_det,ftot_dtc |
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| 296 | !! use ballast scheme (1) or simple exponential scheme (0; a conservation test) |
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| 297 | INTEGER :: iball |
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| 298 | !! use biological fluxes (1) or not (0) |
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| 299 | INTEGER :: ibio_switch |
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| 300 | !! |
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| 301 | !! diagnose fluxes (should only be used in 1D runs) |
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| 302 | ! INTEGER :: idf, idfval |
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| 303 | !! |
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| 304 | !! nitrogen and silicon production and consumption |
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| 305 | REAL(wp) :: fn_prod, fn_cons, fs_prod, fs_cons |
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| 306 | ! REAL(wp), DIMENSION(jpi,jpj) :: fnit_prod, fnit_cons, fsil_prod, fsil_cons |
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| 307 | # if defined key_roam |
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| 308 | !! |
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| 309 | !! flags to help with calculating the position of the CCD |
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| 310 | ! Moved into carb_chem.F90 - marc 20/4/17 |
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| 311 | ! INTEGER, DIMENSION(jpi,jpj) :: i2_omcal,i2_omarg |
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| 312 | !! |
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| 313 | !! AXY (24/11/16): add xCO2 variable for atmosphere (what we actually have) |
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| 314 | ! REAL(wp) :: f_xco2a |
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| 315 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_ph, f_pco2w, f_h2co3, f_hco3, f_co3, f_co2flux |
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| 316 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_TDIC, f_TALK, f_dcf, f_henry |
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| 317 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_pp0 |
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| 318 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_kw660, f_o2flux, f_o2sat |
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| 319 | REAL(wp) :: f_o2sat3 |
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| 320 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_omcal, f_omarg |
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| 321 | !! |
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| 322 | !! AXY (23/06/15): additional diagnostics for MOCSY and oxygen |
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| 323 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_fco2w, f_BetaD, f_rhosw, f_opres, f_insitut, f_pco2atm, f_fco2atm |
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| 324 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_schmidtco2, f_kwco2, f_K0, f_co2starair, f_dpco2, f_kwo2 |
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| 325 | !! jpalm 14-07-2016: convert CO2flux diag from mmol/m2/d to kg/m2/s |
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| 326 | REAL, PARAMETER :: weight_CO2_mol = 44.0095 !! g / mol |
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| 327 | REAL, PARAMETER :: secs_in_day = 86400.0 !! s / d |
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| 328 | REAL, PARAMETER :: CO2flux_conv = (1.e-6 * weight_CO2_mol) / secs_in_day |
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| 329 | |
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| 330 | !! |
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| 331 | ! INTEGER, DIMENSION(jpi,jpj) :: iters |
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| 332 | REAL(wp) :: f_year |
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| 333 | INTEGER :: i_year |
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| 334 | INTEGER :: iyr1, iyr2 |
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| 335 | !! |
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| 336 | !! carbon, alkalinity production and consumption |
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| 337 | REAL(wp) :: fc_prod, fc_cons, fa_prod, fa_cons |
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| 338 | ! REAL(wp), DIMENSION(jpi,jpj) :: fcomm_resp |
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| 339 | ! REAL(wp), DIMENSION(jpi,jpj) :: fcar_prod, fcar_cons |
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| 340 | !! |
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| 341 | !! oxygen production and consumption (and non-consumption) |
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| 342 | REAL(wp), DIMENSION(jpi,jpj) :: fo2_prod, fo2_cons, fo2_ncons, fo2_ccons |
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| 343 | ! REAL(wp), DIMENSION(jpi,jpj) :: foxy_prod, foxy_cons, foxy_anox |
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| 344 | !! Jpalm (11-08-2014) |
|---|
| 345 | !! add DMS in MEDUSA for UKESM1 model |
|---|
| 346 | ! REAL(wp), DIMENSION(jpi,jpj) :: dms_surf |
|---|
| 347 | !! AXY (13/03/15): add in other DMS calculations |
|---|
| 348 | ! REAL(wp), DIMENSION(jpi,jpj) :: dms_andr, dms_simo, dms_aran, dms_hall |
|---|
| 349 | |
|---|
| 350 | # endif |
|---|
| 351 | !! |
|---|
| 352 | !! benthic fluxes |
|---|
| 353 | ! INTEGER :: ibenthic |
|---|
| 354 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_sbenin_n, f_sbenin_fe, f_sbenin_c |
|---|
| 355 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_fbenin_n, f_fbenin_fe, f_fbenin_si, f_fbenin_c, f_fbenin_ca |
|---|
| 356 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_benout_n, f_benout_fe, f_benout_si, f_benout_c, f_benout_ca |
|---|
| 357 | REAL(wp) :: zfact |
|---|
| 358 | !! |
|---|
| 359 | !! benthic fluxes of CaCO3 that shouldn't happen because of lysocline |
|---|
| 360 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_benout_lyso_ca |
|---|
| 361 | !! |
|---|
| 362 | !! riverine fluxes |
|---|
| 363 | ! REAL(wp), DIMENSION(jpi,jpj) :: f_runoff, f_riv_n, f_riv_si, f_riv_c, f_riv_alk |
|---|
| 364 | !! AXY (19/07/12): variables for local riverine fluxes to handle inputs below surface |
|---|
| 365 | REAL(wp), DIMENSION(jpi,jpj) :: f_riv_loc_n, f_riv_loc_si, f_riv_loc_c, f_riv_loc_alk |
|---|
| 366 | !!--------------------------------------------------------------------- |
|---|
| 367 | |
|---|
| 368 | # if defined key_debug_medusa |
|---|
| 369 | IF (lwp) write (numout,*) 'trc_bio_medusa: variables defined' |
|---|
| 370 | CALL flush(numout) |
|---|
| 371 | # endif |
|---|
| 372 | |
|---|
| 373 | !! AXY (20/11/14): alter this to report on first MEDUSA call |
|---|
| 374 | !! IF( kt == nit000 ) THEN |
|---|
| 375 | IF( kt == nittrc000 ) THEN |
|---|
| 376 | IF(lwp) WRITE(numout,*) |
|---|
| 377 | IF(lwp) WRITE(numout,*) ' trc_bio: MEDUSA bio-model' |
|---|
| 378 | IF(lwp) WRITE(numout,*) ' ~~~~~~~' |
|---|
| 379 | IF(lwp) WRITE(numout,*) ' kt =',kt |
|---|
| 380 | ENDIF |
|---|
| 381 | |
|---|
| 382 | !! AXY (13/01/12): is benthic model properly interactive? 0 = no, 1 = yes |
|---|
| 383 | ibenthic = 1 |
|---|
| 384 | |
|---|
| 385 | !! not sure what this is for; it's not used anywhere; commenting out |
|---|
| 386 | !! fbodn(:,:) = 0.e0 |
|---|
| 387 | |
|---|
| 388 | !! |
|---|
| 389 | IF( ln_diatrc ) THEN |
|---|
| 390 | !! blank 2D diagnostic array |
|---|
| 391 | trc2d(:,:,:) = 0.e0 |
|---|
| 392 | !! |
|---|
| 393 | !! blank 3D diagnostic array |
|---|
| 394 | trc3d(:,:,:,:) = 0.e0 |
|---|
| 395 | ENDIF |
|---|
| 396 | |
|---|
| 397 | !!---------------------------------------------------------------------- |
|---|
| 398 | !! b0 is present for debugging purposes; using b0 = 0 sets the tendency |
|---|
| 399 | !! terms of all biological equations to 0. |
|---|
| 400 | !!---------------------------------------------------------------------- |
|---|
| 401 | !! |
|---|
| 402 | !! AXY (03/09/14): probably not the smartest move ever, but it'll fit |
|---|
| 403 | !! the bill for now; another item on the things-to-sort- |
|---|
| 404 | !! out-in-the-future list ... |
|---|
| 405 | # if defined key_kill_medusa |
|---|
| 406 | b0 = 0. |
|---|
| 407 | # else |
|---|
| 408 | b0 = 1. |
|---|
| 409 | # endif |
|---|
| 410 | !!---------------------------------------------------------------------- |
|---|
| 411 | !! fast detritus ballast scheme (0 = no; 1 = yes) |
|---|
| 412 | !! alternative to ballast scheme is same scheme but with no ballast |
|---|
| 413 | !! protection (not dissimilar to Martin et al., 1987) |
|---|
| 414 | !!---------------------------------------------------------------------- |
|---|
| 415 | !! |
|---|
| 416 | iball = 1 |
|---|
| 417 | |
|---|
| 418 | !!---------------------------------------------------------------------- |
|---|
| 419 | !! full flux diagnostics (0 = no; 1 = yes); appear in ocean.output |
|---|
| 420 | !! these should *only* be used in 1D since they give comprehensive |
|---|
| 421 | !! output for ecological functions in the model; primarily used in |
|---|
| 422 | !! debugging |
|---|
| 423 | !!---------------------------------------------------------------------- |
|---|
| 424 | !! |
|---|
| 425 | idf = 0 |
|---|
| 426 | !! |
|---|
| 427 | !! timer mechanism |
|---|
| 428 | if (kt/120*120.eq.kt) then |
|---|
| 429 | idfval = 1 |
|---|
| 430 | else |
|---|
| 431 | idfval = 0 |
|---|
| 432 | endif |
|---|
| 433 | |
|---|
| 434 | !!---------------------------------------------------------------------- |
|---|
| 435 | !! Initialise arrays to zero and set up arrays for diagnostics |
|---|
| 436 | !!---------------------------------------------------------------------- |
|---|
| 437 | ! tmp - marc |
|---|
| 438 | write(numout,*) 'bbb13. before call to bio_medusa_init,kt=',kt |
|---|
| 439 | flush(numout) |
|---|
| 440 | ! |
|---|
| 441 | CALL bio_medusa_init( kt ) |
|---|
| 442 | ! tmp - marc |
|---|
| 443 | write(numout,*) 'bbb14. after call to bio_medusa_init,kt=',kt |
|---|
| 444 | flush(numout) |
|---|
| 445 | ! |
|---|
| 446 | !! |
|---|
| 447 | # if defined key_axy_nancheck |
|---|
| 448 | DO jn = 1,jptra |
|---|
| 449 | !! fq0 = MINVAL(trn(:,:,:,jn)) |
|---|
| 450 | !! fq1 = MAXVAL(trn(:,:,:,jn)) |
|---|
| 451 | fq2 = SUM(trn(:,:,:,jn)) |
|---|
| 452 | !! if (lwp) write (numout,'(a,2i6,3(1x,1pe15.5))') 'NAN-CHECK', & |
|---|
| 453 | !! & kt, jn, fq0, fq1, fq2 |
|---|
| 454 | !! AXY (30/01/14): much to our surprise, the next line doesn't work on HECTOR |
|---|
| 455 | !! and has been replaced here with a specialist routine |
|---|
| 456 | !! if (fq2 /= fq2 ) then |
|---|
| 457 | if ( ieee_is_nan( fq2 ) ) then |
|---|
| 458 | !! there's a NaN here |
|---|
| 459 | if (lwp) write(numout,*) 'NAN detected in field', jn, 'at time', kt, 'at position:' |
|---|
| 460 | DO jk = 1,jpk |
|---|
| 461 | DO jj = 1,jpj |
|---|
| 462 | DO ji = 1,jpi |
|---|
| 463 | !! AXY (30/01/14): "isnan" problem on HECTOR |
|---|
| 464 | !! if (trn(ji,jj,jk,jn) /= trn(ji,jj,jk,jn)) then |
|---|
| 465 | if ( ieee_is_nan( trn(ji,jj,jk,jn) ) ) then |
|---|
| 466 | if (lwp) write (numout,'(a,1pe12.2,4i6)') 'NAN-CHECK', & |
|---|
| 467 | & tmask(ji,jj,jk), ji, jj, jk, jn |
|---|
| 468 | endif |
|---|
| 469 | enddo |
|---|
| 470 | enddo |
|---|
| 471 | enddo |
|---|
| 472 | CALL ctl_stop( 'trcbio_medusa, NAN in incoming tracer field' ) |
|---|
| 473 | endif |
|---|
| 474 | ENDDO |
|---|
| 475 | CALL flush(numout) |
|---|
| 476 | # endif |
|---|
| 477 | |
|---|
| 478 | # if defined key_debug_medusa |
|---|
| 479 | IF (lwp) write (numout,*) 'trc_bio_medusa: variables initialised and checked' |
|---|
| 480 | CALL flush(numout) |
|---|
| 481 | # endif |
|---|
| 482 | |
|---|
| 483 | # if defined key_roam |
|---|
| 484 | !!---------------------------------------------------------------------- |
|---|
| 485 | !! calculate atmospheric pCO2 |
|---|
| 486 | !!---------------------------------------------------------------------- |
|---|
| 487 | !! |
|---|
| 488 | !! what's atmospheric pCO2 doing? (data start in 1859) |
|---|
| 489 | iyr1 = nyear - 1859 + 1 |
|---|
| 490 | iyr2 = iyr1 + 1 |
|---|
| 491 | if (iyr1 .le. 1) then |
|---|
| 492 | !! before 1860 |
|---|
| 493 | f_xco2a(:,:) = hist_pco2(1) |
|---|
| 494 | elseif (iyr2 .ge. 242) then |
|---|
| 495 | !! after 2099 |
|---|
| 496 | f_xco2a(:,:) = hist_pco2(242) |
|---|
| 497 | else |
|---|
| 498 | !! just right |
|---|
| 499 | fq0 = hist_pco2(iyr1) |
|---|
| 500 | fq1 = hist_pco2(iyr2) |
|---|
| 501 | fq2 = real(nsec_day) / (60.0 * 60.0 * 24.0) |
|---|
| 502 | !! AXY (14/06/12): tweaked to make more sense (and be correct) |
|---|
| 503 | # if defined key_bs_axy_yrlen |
|---|
| 504 | fq3 = (real(nday_year) - 1.0 + fq2) / 360.0 !! bugfix: for 360d year with HadGEM2-ES forcing |
|---|
| 505 | # else |
|---|
| 506 | fq3 = (real(nday_year) - 1.0 + fq2) / 365.0 !! original use of 365 days (not accounting for leap year or 360d year) |
|---|
| 507 | # endif |
|---|
| 508 | fq4 = (fq0 * (1.0 - fq3)) + (fq1 * fq3) |
|---|
| 509 | f_xco2a(:,:) = fq4 |
|---|
| 510 | endif |
|---|
| 511 | # if defined key_axy_pi_co2 |
|---|
| 512 | f_xco2a(:,:) = 284.725 !! OCMIP pre-industrial pCO2 |
|---|
| 513 | # endif |
|---|
| 514 | !! IF(lwp) WRITE(numout,*) ' MEDUSA nyear =', nyear |
|---|
| 515 | !! IF(lwp) WRITE(numout,*) ' MEDUSA nsec_day =', real(nsec_day) |
|---|
| 516 | !! IF(lwp) WRITE(numout,*) ' MEDUSA nday_year =', real(nday_year) |
|---|
| 517 | !! AXY (29/01/14): remove surplus diagnostics |
|---|
| 518 | !! IF(lwp) WRITE(numout,*) ' MEDUSA fq0 =', fq0 |
|---|
| 519 | !! IF(lwp) WRITE(numout,*) ' MEDUSA fq1 =', fq1 |
|---|
| 520 | !! IF(lwp) WRITE(numout,*) ' MEDUSA fq2 =', fq2 |
|---|
| 521 | !! IF(lwp) WRITE(numout,*) ' MEDUSA fq3 =', fq3 |
|---|
| 522 | IF(lwp) WRITE(numout,*) ' MEDUSA atm pCO2 =', f_xco2a(1,1) |
|---|
| 523 | # endif |
|---|
| 524 | |
|---|
| 525 | # if defined key_debug_medusa |
|---|
| 526 | IF (lwp) write (numout,*) 'trc_bio_medusa: ready for carbonate chemistry' |
|---|
| 527 | IF (lwp) write (numout,*) 'trc_bio_medusa: kt = ', kt |
|---|
| 528 | IF (lwp) write (numout,*) 'trc_bio_medusa: nittrc000 = ', nittrc000 |
|---|
| 529 | CALL flush(numout) |
|---|
| 530 | # endif |
|---|
| 531 | |
|---|
| 532 | # if defined key_roam |
|---|
| 533 | !! AXY (20/11/14): alter to call on first MEDUSA timestep and then every |
|---|
| 534 | !! month (this is hardwired as 960 timesteps but should |
|---|
| 535 | !! be calculated and done properly |
|---|
| 536 | !! IF( kt == nit000 .or. mod(kt,1920) == 0 ) THEN |
|---|
| 537 | !! IF( kt == nittrc000 .or. mod(kt,960) == 0 ) THEN |
|---|
| 538 | !!============================= |
|---|
| 539 | !! Jpalm -- 07-10-2016 -- need to change carb-chem frequency call : |
|---|
| 540 | !! we don't want to call on the first time-step of all run submission, |
|---|
| 541 | !! but only on the very first time-step, and then every month |
|---|
| 542 | !! So we call on nittrc000 if not restarted run, |
|---|
| 543 | !! else if one month after last call. |
|---|
| 544 | !! assume one month is 30d --> 3600*24*30 : 2592000s |
|---|
| 545 | !! try to call carb-chem at 1st month's tm-stp : x * 30d + 1*rdt(i.e: mod = rdt) |
|---|
| 546 | !! ++ need to pass carb-chem output var through restarts |
|---|
| 547 | If ( ( kt == nittrc000 .AND. .NOT.ln_rsttr ) .OR. mod(kt*rdt,2592000.) == rdt ) THEN |
|---|
| 548 | !!---------------------------------------------------------------------- |
|---|
| 549 | !! Calculate the carbonate chemistry for the whole ocean on the first |
|---|
| 550 | !! simulation timestep and every month subsequently; the resulting 3D |
|---|
| 551 | !! field of omega calcite is used to determine the depth of the CCD |
|---|
| 552 | !!---------------------------------------------------------------------- |
|---|
| 553 | CALL carb_chem( kt ) |
|---|
| 554 | |
|---|
| 555 | ENDIF |
|---|
| 556 | # endif |
|---|
| 557 | |
|---|
| 558 | # if defined key_debug_medusa |
|---|
| 559 | IF (lwp) write (numout,*) 'trc_bio_medusa: ready for full domain calculations' |
|---|
| 560 | CALL flush(numout) |
|---|
| 561 | # endif |
|---|
| 562 | |
|---|
| 563 | !!---------------------------------------------------------------------- |
|---|
| 564 | !! MEDUSA has unified equation through the water column |
|---|
| 565 | !! (Diff. from LOBSTER which has two sets: bio- and non-bio layers) |
|---|
| 566 | !! Statement below in LOBSTER is different: DO jk = 1, jpkbm1 |
|---|
| 567 | !!---------------------------------------------------------------------- |
|---|
| 568 | !! |
|---|
| 569 | !! NOTE: the ordering of the loops below differs from that of some other |
|---|
| 570 | !! models; looping over the vertical dimension is the outermost loop and |
|---|
| 571 | !! this complicates some calculations (e.g. storage of vertical fluxes |
|---|
| 572 | !! that can otherwise be done via a singular variable require 2D fields |
|---|
| 573 | !! here); however, these issues are relatively easily resolved, but the |
|---|
| 574 | !! loops CANNOT be reordered without potentially causing code efficiency |
|---|
| 575 | !! problems (e.g. array indexing means that reordering the loops would |
|---|
| 576 | !! require skipping between widely-spaced memory location; potentially |
|---|
| 577 | !! outside those immediately cached) |
|---|
| 578 | !! |
|---|
| 579 | !! OPEN vertical loop |
|---|
| 580 | DO jk = 1,jpk |
|---|
| 581 | !! OPEN horizontal loops |
|---|
| 582 | DO jj = 2,jpjm1 |
|---|
| 583 | DO ji = 2,jpim1 |
|---|
| 584 | !! OPEN wet point IF..THEN loop |
|---|
| 585 | if (tmask(ji,jj,jk) == 1) then |
|---|
| 586 | !!=========================================================== |
|---|
| 587 | !! SETUP LOCAL GRID CELL |
|---|
| 588 | !!=========================================================== |
|---|
| 589 | !! |
|---|
| 590 | !!----------------------------------------------------------- |
|---|
| 591 | !! Some notes on grid vertical structure |
|---|
| 592 | !! - fsdepw(ji,jj,jk) is the depth of the upper surface of |
|---|
| 593 | !! level jk |
|---|
| 594 | !! - fsde3w(ji,jj,jk) is *approximately* the midpoint of |
|---|
| 595 | !! level jk |
|---|
| 596 | !! - fse3t(ji,jj,jk) is the thickness of level jk |
|---|
| 597 | !!----------------------------------------------------------- |
|---|
| 598 | !! |
|---|
| 599 | !! AXY (01/03/10): set up level depth (bottom of level) |
|---|
| 600 | fdep1(ji,jj) = fsdepw(ji,jj,jk) + fse3t(ji,jj,jk) |
|---|
| 601 | !! AXY (28/11/16): local seafloor depth |
|---|
| 602 | !! previously mbathy(ji,jj) - 1, now |
|---|
| 603 | !! mbathy(ji,jj) |
|---|
| 604 | mbathy(ji,jj) = mbathy(ji,jj) |
|---|
| 605 | !! |
|---|
| 606 | !! set up model tracers |
|---|
| 607 | !! negative values of state variables are not allowed to |
|---|
| 608 | !! contribute to the calculated fluxes |
|---|
| 609 | !! non-diatom chlorophyll |
|---|
| 610 | zchn(ji,jj) = max(0.,trn(ji,jj,jk,jpchn)) |
|---|
| 611 | !! diatom chlorophyll |
|---|
| 612 | zchd(ji,jj) = max(0.,trn(ji,jj,jk,jpchd)) |
|---|
| 613 | !! non-diatoms |
|---|
| 614 | zphn(ji,jj) = max(0.,trn(ji,jj,jk,jpphn)) |
|---|
| 615 | !! diatoms |
|---|
| 616 | zphd(ji,jj) = max(0.,trn(ji,jj,jk,jpphd)) |
|---|
| 617 | !! diatom silicon |
|---|
| 618 | zpds(ji,jj) = max(0.,trn(ji,jj,jk,jppds)) |
|---|
| 619 | !! AXY (28/01/10): probably need to take account of |
|---|
| 620 | !! chl/biomass connection |
|---|
| 621 | if (zchn(ji,jj).eq.0.) zphn(ji,jj) = 0. |
|---|
| 622 | if (zchd(ji,jj).eq.0.) zphd(ji,jj) = 0. |
|---|
| 623 | if (zphn(ji,jj).eq.0.) zchn(ji,jj) = 0. |
|---|
| 624 | if (zphd(ji,jj).eq.0.) zchd(ji,jj) = 0. |
|---|
| 625 | !! AXY (23/01/14): duh - why did I forget diatom silicon? |
|---|
| 626 | if (zpds(ji,jj).eq.0.) zphd(ji,jj) = 0. |
|---|
| 627 | if (zphd(ji,jj).eq.0.) zpds(ji,jj) = 0. |
|---|
| 628 | !! microzooplankton |
|---|
| 629 | zzmi(ji,jj) = max(0.,trn(ji,jj,jk,jpzmi)) |
|---|
| 630 | !! mesozooplankton |
|---|
| 631 | zzme(ji,jj) = max(0.,trn(ji,jj,jk,jpzme)) |
|---|
| 632 | !! detrital nitrogen |
|---|
| 633 | zdet(ji,jj) = max(0.,trn(ji,jj,jk,jpdet)) |
|---|
| 634 | !! dissolved inorganic nitrogen |
|---|
| 635 | zdin(ji,jj) = max(0.,trn(ji,jj,jk,jpdin)) |
|---|
| 636 | !! dissolved silicic acid |
|---|
| 637 | zsil(ji,jj) = max(0.,trn(ji,jj,jk,jpsil)) |
|---|
| 638 | !! dissolved "iron" |
|---|
| 639 | zfer(ji,jj) = max(0.,trn(ji,jj,jk,jpfer)) |
|---|
| 640 | # if defined key_roam |
|---|
| 641 | !! detrital carbon |
|---|
| 642 | zdtc(ji,jj) = max(0.,trn(ji,jj,jk,jpdtc)) |
|---|
| 643 | !! dissolved inorganic carbon |
|---|
| 644 | zdic(ji,jj) = max(0.,trn(ji,jj,jk,jpdic)) |
|---|
| 645 | !! alkalinity |
|---|
| 646 | zalk(ji,jj) = max(0.,trn(ji,jj,jk,jpalk)) |
|---|
| 647 | !! oxygen |
|---|
| 648 | zoxy(ji,jj) = max(0.,trn(ji,jj,jk,jpoxy)) |
|---|
| 649 | # if defined key_axy_carbchem && defined key_mocsy |
|---|
| 650 | !! phosphate via DIN and Redfield |
|---|
| 651 | zpho(ji,jj) = max(0.,trn(ji,jj,jk,jpdin)) / 16.0 |
|---|
| 652 | # endif |
|---|
| 653 | !! |
|---|
| 654 | !! also need physical parameters for gas exchange calculations |
|---|
| 655 | ztmp(ji,jj) = tsn(ji,jj,jk,jp_tem) |
|---|
| 656 | zsal(ji,jj) = tsn(ji,jj,jk,jp_sal) |
|---|
| 657 | !! |
|---|
| 658 | !! AXY (28/02/14): check input fields |
|---|
| 659 | if (ztmp(ji,jj) .lt. -3.0 .or. ztmp(ji,jj) .gt. 40.0 ) then |
|---|
| 660 | IF(lwp) WRITE(numout,*) ' trc_bio_medusa: T WARNING 2D, ', & |
|---|
| 661 | tsb(ji,jj,jk,jp_tem), tsn(ji,jj,jk,jp_tem), ' at (', & |
|---|
| 662 | ji, ',', jj, ',', jk, ') at time', kt |
|---|
| 663 | IF(lwp) WRITE(numout,*) ' trc_bio_medusa: T SWITCHING 2D, ',& |
|---|
| 664 | tsn(ji,jj,jk,jp_tem), ' -> ', tsb(ji,jj,jk,jp_tem) |
|---|
| 665 | !! temperatur |
|---|
| 666 | ztmp(ji,jj) = tsb(ji,jj,jk,jp_tem) |
|---|
| 667 | endif |
|---|
| 668 | if (zsal(ji,jj) .lt. 0.0 .or. zsal(ji,jj) .gt. 45.0 ) then |
|---|
| 669 | IF(lwp) WRITE(numout,*) ' trc_bio_medusa: S WARNING 2D, ', & |
|---|
| 670 | tsb(ji,jj,jk,jp_sal), tsn(ji,jj,jk,jp_sal), ' at (', & |
|---|
| 671 | ji, ',', jj, ',', jk, ') at time', kt |
|---|
| 672 | endif |
|---|
| 673 | # else |
|---|
| 674 | !! implicit detrital carbon |
|---|
| 675 | zdtc(ji,jj) = zdet(ji,jj) * xthetad |
|---|
| 676 | # endif |
|---|
| 677 | # if defined key_debug_medusa |
|---|
| 678 | if (idf.eq.1) then |
|---|
| 679 | !! AXY (15/01/10) |
|---|
| 680 | if (trn(ji,jj,jk,jpdin).lt.0.) then |
|---|
| 681 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 682 | IF (lwp) write (numout,*) 'NEGATIVE DIN ERROR =', & |
|---|
| 683 | trn(ji,jj,jk,jpdin) |
|---|
| 684 | IF (lwp) write (numout,*) 'NEGATIVE DIN ERROR @', & |
|---|
| 685 | ji, jj, jk, kt |
|---|
| 686 | endif |
|---|
| 687 | if (trn(ji,jj,jk,jpsil).lt.0.) then |
|---|
| 688 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 689 | IF (lwp) write (numout,*) 'NEGATIVE SIL ERROR =', & |
|---|
| 690 | trn(ji,jj,jk,jpsil) |
|---|
| 691 | IF (lwp) write (numout,*) 'NEGATIVE SIL ERROR @', & |
|---|
| 692 | ji, jj, jk, kt |
|---|
| 693 | endif |
|---|
| 694 | # if defined key_roam |
|---|
| 695 | if (trn(ji,jj,jk,jpdic).lt.0.) then |
|---|
| 696 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 697 | IF (lwp) write (numout,*) 'NEGATIVE DIC ERROR =', & |
|---|
| 698 | trn(ji,jj,jk,jpdic) |
|---|
| 699 | IF (lwp) write (numout,*) 'NEGATIVE DIC ERROR @', & |
|---|
| 700 | ji, jj, jk, kt |
|---|
| 701 | endif |
|---|
| 702 | if (trn(ji,jj,jk,jpalk).lt.0.) then |
|---|
| 703 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 704 | IF (lwp) write (numout,*) 'NEGATIVE ALK ERROR =', & |
|---|
| 705 | trn(ji,jj,jk,jpalk) |
|---|
| 706 | IF (lwp) write (numout,*) 'NEGATIVE ALK ERROR @', & |
|---|
| 707 | ji, jj, jk, kt |
|---|
| 708 | endif |
|---|
| 709 | if (trn(ji,jj,jk,jpoxy).lt.0.) then |
|---|
| 710 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 711 | IF (lwp) write (numout,*) 'NEGATIVE OXY ERROR =', & |
|---|
| 712 | trn(ji,jj,jk,jpoxy) |
|---|
| 713 | IF (lwp) write (numout,*) 'NEGATIVE OXY ERROR @', & |
|---|
| 714 | ji, jj, jk, kt |
|---|
| 715 | endif |
|---|
| 716 | # endif |
|---|
| 717 | endif |
|---|
| 718 | # endif |
|---|
| 719 | # if defined key_debug_medusa |
|---|
| 720 | !! report state variable values |
|---|
| 721 | if (idf.eq.1.AND.idfval.eq.1) then |
|---|
| 722 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 723 | IF (lwp) write (numout,*) 'fthk(',jk,') = ', fse3t(ji,jj,jk) |
|---|
| 724 | IF (lwp) write (numout,*) 'zphn(',jk,') = ', zphn(ji,jj) |
|---|
| 725 | IF (lwp) write (numout,*) 'zphd(',jk,') = ', zphd(ji,jj) |
|---|
| 726 | IF (lwp) write (numout,*) 'zpds(',jk,') = ', zpds(ji,jj) |
|---|
| 727 | IF (lwp) write (numout,*) 'zzmi(',jk,') = ', zzmi(ji,jj) |
|---|
| 728 | IF (lwp) write (numout,*) 'zzme(',jk,') = ', zzme(ji,jj) |
|---|
| 729 | IF (lwp) write (numout,*) 'zdet(',jk,') = ', zdet(ji,jj) |
|---|
| 730 | IF (lwp) write (numout,*) 'zdin(',jk,') = ', zdin(ji,jj) |
|---|
| 731 | IF (lwp) write (numout,*) 'zsil(',jk,') = ', zsil(ji,jj) |
|---|
| 732 | IF (lwp) write (numout,*) 'zfer(',jk,') = ', zfer(ji,jj) |
|---|
| 733 | # if defined key_roam |
|---|
| 734 | IF (lwp) write (numout,*) 'zdtc(',jk,') = ', zdtc(ji,jj) |
|---|
| 735 | IF (lwp) write (numout,*) 'zdic(',jk,') = ', zdic(ji,jj) |
|---|
| 736 | IF (lwp) write (numout,*) 'zalk(',jk,') = ', zalk(ji,jj) |
|---|
| 737 | IF (lwp) write (numout,*) 'zoxy(',jk,') = ', zoxy(ji,jj) |
|---|
| 738 | # endif |
|---|
| 739 | endif |
|---|
| 740 | # endif |
|---|
| 741 | |
|---|
| 742 | # if defined key_debug_medusa |
|---|
| 743 | if (idf.eq.1.AND.idfval.eq.1.AND.jk.eq.1) then |
|---|
| 744 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 745 | IF (lwp) write (numout,*) 'dust = ', dust(ji,jj) |
|---|
| 746 | endif |
|---|
| 747 | # endif |
|---|
| 748 | |
|---|
| 749 | !! sum tracers for inventory checks |
|---|
| 750 | IF( lk_iomput ) THEN |
|---|
| 751 | IF ( med_diag%INVTN%dgsave ) THEN |
|---|
| 752 | ftot_n(ji,jj) = ftot_n(ji,jj) + & |
|---|
| 753 | (fse3t(ji,jj,jk) * ( zphn(ji,jj) + zphd(ji,jj) + & |
|---|
| 754 | zzmi(ji,jj) + zzme(ji,jj) + & |
|---|
| 755 | zdet(ji,jj) + zdin(ji,jj) ) ) |
|---|
| 756 | ENDIF |
|---|
| 757 | IF ( med_diag%INVTSI%dgsave ) THEN |
|---|
| 758 | ftot_si(ji,jj) = ftot_si(ji,jj) + & |
|---|
| 759 | (fse3t(ji,jj,jk) * ( zpds(ji,jj) + zsil(ji,jj) ) ) |
|---|
| 760 | ENDIF |
|---|
| 761 | IF ( med_diag%INVTFE%dgsave ) THEN |
|---|
| 762 | ftot_fe(ji,jj) = ftot_fe(ji,jj) + & |
|---|
| 763 | (fse3t(ji,jj,jk) * ( xrfn * & |
|---|
| 764 | ( zphn(ji,jj) + zphd(ji,jj) + & |
|---|
| 765 | zzmi(ji,jj) + zzme(ji,jj) + & |
|---|
| 766 | zdet(ji,jj) ) + zfer(ji,jj) ) ) |
|---|
| 767 | ENDIF |
|---|
| 768 | # if defined key_roam |
|---|
| 769 | IF ( med_diag%INVTC%dgsave ) THEN |
|---|
| 770 | ftot_c(ji,jj) = ftot_c(ji,jj) + & |
|---|
| 771 | (fse3t(ji,jj,jk) * ( (xthetapn * zphn(ji,jj)) + & |
|---|
| 772 | (xthetapd * zphd(ji,jj)) + & |
|---|
| 773 | (xthetazmi * zzmi(ji,jj)) + & |
|---|
| 774 | (xthetazme * zzme(ji,jj)) + & |
|---|
| 775 | zdtc(ji,jj) + zdic(ji,jj) ) ) |
|---|
| 776 | ENDIF |
|---|
| 777 | IF ( med_diag%INVTALK%dgsave ) THEN |
|---|
| 778 | ftot_a(ji,jj) = ftot_a(ji,jj) + (fse3t(ji,jj,jk) * & |
|---|
| 779 | zalk(ji,jj)) |
|---|
| 780 | ENDIF |
|---|
| 781 | IF ( med_diag%INVTO2%dgsave ) THEN |
|---|
| 782 | ftot_o2(ji,jj) = ftot_o2(ji,jj) + (fse3t(ji,jj,jk) * & |
|---|
| 783 | zoxy(ji,jj)) |
|---|
| 784 | ENDIF |
|---|
| 785 | !! |
|---|
| 786 | !! AXY (10/11/16): CMIP6 diagnostics |
|---|
| 787 | IF ( med_diag%INTDISSIC%dgsave ) THEN |
|---|
| 788 | intdissic(ji,jj) = intdissic(ji,jj) + & |
|---|
| 789 | (fse3t(ji,jj,jk) * zdic(ji,jj)) |
|---|
| 790 | ENDIF |
|---|
| 791 | IF ( med_diag%INTDISSIN%dgsave ) THEN |
|---|
| 792 | intdissin(ji,jj) = intdissin(ji,jj) + & |
|---|
| 793 | (fse3t(ji,jj,jk) * zdin(ji,jj)) |
|---|
| 794 | ENDIF |
|---|
| 795 | IF ( med_diag%INTDISSISI%dgsave ) THEN |
|---|
| 796 | intdissisi(ji,jj) = intdissisi(ji,jj) + & |
|---|
| 797 | (fse3t(ji,jj,jk) * zsil(ji,jj)) |
|---|
| 798 | ENDIF |
|---|
| 799 | IF ( med_diag%INTTALK%dgsave ) THEN |
|---|
| 800 | inttalk(ji,jj) = inttalk(ji,jj) + & |
|---|
| 801 | (fse3t(ji,jj,jk) * zalk(ji,jj)) |
|---|
| 802 | ENDIF |
|---|
| 803 | IF ( med_diag%O2min%dgsave ) THEN |
|---|
| 804 | if ( zoxy(ji,jj) < o2min(ji,jj) ) then |
|---|
| 805 | o2min(ji,jj) = zoxy(ji,jj) |
|---|
| 806 | IF ( med_diag%ZO2min%dgsave ) THEN |
|---|
| 807 | !! layer midpoint |
|---|
| 808 | zo2min(ji,jj) = (fsdepw(ji,jj,jk) + & |
|---|
| 809 | fdep1(ji,jj)) / 2.0 |
|---|
| 810 | ENDIF |
|---|
| 811 | endif |
|---|
| 812 | ENDIF |
|---|
| 813 | # endif |
|---|
| 814 | ENDIF |
|---|
| 815 | |
|---|
| 816 | CALL flush(numout) |
|---|
| 817 | |
|---|
| 818 | ENDIF |
|---|
| 819 | ENDDO |
|---|
| 820 | ENDDO |
|---|
| 821 | |
|---|
| 822 | !!---------------------------------------------------------------- |
|---|
| 823 | !! Calculate air-sea gas exchange and river inputs |
|---|
| 824 | !!---------------------------------------------------------------- |
|---|
| 825 | IF ( jk == 1 ) THEN |
|---|
| 826 | call air_sea( kt ) |
|---|
| 827 | END IF |
|---|
| 828 | |
|---|
| 829 | # if defined key_roam |
|---|
| 830 | |
|---|
| 831 | ! Moved from above - marc 21/4/17 |
|---|
| 832 | ! I think this should be moved into diagnostics at bottom - it |
|---|
| 833 | ! doesn't like it is used anyway else - marc 21/4/17 |
|---|
| 834 | DO jj = 2,jpjm1 |
|---|
| 835 | DO ji = 2,jpim1 |
|---|
| 836 | !! OPEN wet point IF..THEN loop |
|---|
| 837 | if (tmask(ji,jj,jk) == 1) then |
|---|
| 838 | |
|---|
| 839 | !! AXY (11/11/16): CMIP6 oxygen saturation 3D diagnostic |
|---|
| 840 | IF ( med_diag%O2SAT3%dgsave ) THEN |
|---|
| 841 | call oxy_sato( ztmp(ji,jj), zsal(ji,jj), f_o2sat3 ) |
|---|
| 842 | o2sat3(ji, jj, jk) = f_o2sat3 |
|---|
| 843 | ENDIF |
|---|
| 844 | ENDIF |
|---|
| 845 | ENDDO |
|---|
| 846 | ENDDO |
|---|
| 847 | # endif |
|---|
| 848 | |
|---|
| 849 | !!------------------------------------------------------------------ |
|---|
| 850 | !! Phytoplankton growth, zooplankton grazing and miscellaneous |
|---|
| 851 | !! plankton losses. |
|---|
| 852 | !!------------------------------------------------------------------ |
|---|
| 853 | CALL plankton( jk ) |
|---|
| 854 | |
|---|
| 855 | !!---------------------------------------------------------------- |
|---|
| 856 | !! Iron chemistry and scavenging |
|---|
| 857 | !!---------------------------------------------------------------- |
|---|
| 858 | CALL iron_chem_scav( jk ) |
|---|
| 859 | |
|---|
| 860 | ! Miscellaneous processes - marc |
|---|
| 861 | |
|---|
| 862 | DO jj = 2,jpjm1 |
|---|
| 863 | DO ji = 2,jpim1 |
|---|
| 864 | !! OPEN wet point IF..THEN loop |
|---|
| 865 | if (tmask(ji,jj,jk) == 1) then |
|---|
| 866 | |
|---|
| 867 | !!---------------------------------------------------------------------- |
|---|
| 868 | !! Miscellaneous |
|---|
| 869 | !!---------------------------------------------------------------------- |
|---|
| 870 | !! |
|---|
| 871 | !! diatom frustule dissolution |
|---|
| 872 | fsdiss(ji,jj) = xsdiss * zpds(ji,jj) |
|---|
| 873 | |
|---|
| 874 | # if defined key_debug_medusa |
|---|
| 875 | !! report miscellaneous calculations |
|---|
| 876 | if (idf.eq.1.AND.idfval.eq.1) then |
|---|
| 877 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 878 | IF (lwp) write (numout,*) 'fsdiss(',jk,') = ', fsdiss(ji,jj) |
|---|
| 879 | endif |
|---|
| 880 | # endif |
|---|
| 881 | |
|---|
| 882 | !!---------------------------------------------------------------------- |
|---|
| 883 | !! Slow detritus creation |
|---|
| 884 | !!---------------------------------------------------------------------- |
|---|
| 885 | !! this variable integrates the creation of slow sinking detritus |
|---|
| 886 | !! to allow the split between fast and slow detritus to be |
|---|
| 887 | !! diagnosed |
|---|
| 888 | fslown(ji,jj) = fdpn(ji,jj) + fdzmi(ji,jj) + ((1.0 - xfdfrac1) * fdpd(ji,jj)) + & |
|---|
| 889 | ((1.0 - xfdfrac2) * fdzme(ji,jj)) + ((1.0 - xbetan) * (finmi(ji,jj) + finme(ji,jj))) |
|---|
| 890 | !! |
|---|
| 891 | !! this variable records the slow detrital sinking flux at this |
|---|
| 892 | !! particular depth; it is used in the output of this flux at |
|---|
| 893 | !! standard depths in the diagnostic outputs; needs to be |
|---|
| 894 | !! adjusted from per second to per day because of parameter vsed |
|---|
| 895 | fslownflux(ji,jj) = zdet(ji,jj) * vsed * 86400. |
|---|
| 896 | # if defined key_roam |
|---|
| 897 | !! |
|---|
| 898 | !! and the same for detrital carbon |
|---|
| 899 | fslowc(ji,jj) = (xthetapn * fdpn(ji,jj)) + (xthetazmi * fdzmi(ji,jj)) + & |
|---|
| 900 | (xthetapd * (1.0 - xfdfrac1) * fdpd(ji,jj)) + & |
|---|
| 901 | (xthetazme * (1.0 - xfdfrac2) * fdzme(ji,jj)) + & |
|---|
| 902 | ((1.0 - xbetac) * (ficmi(ji,jj) + ficme(ji,jj))) |
|---|
| 903 | !! |
|---|
| 904 | !! this variable records the slow detrital sinking flux at this |
|---|
| 905 | !! particular depth; it is used in the output of this flux at |
|---|
| 906 | !! standard depths in the diagnostic outputs; needs to be |
|---|
| 907 | !! adjusted from per second to per day because of parameter vsed |
|---|
| 908 | fslowcflux(ji,jj) = zdtc(ji,jj) * vsed * 86400. |
|---|
| 909 | # endif |
|---|
| 910 | |
|---|
| 911 | !!---------------------------------------------------------------------- |
|---|
| 912 | !! Nutrient regeneration |
|---|
| 913 | !! this variable integrates total nitrogen regeneration down the |
|---|
| 914 | !! watercolumn; its value is stored and output as a 2D diagnostic; |
|---|
| 915 | !! the corresponding dissolution flux of silicon (from sources |
|---|
| 916 | !! other than fast detritus) is also integrated; note that, |
|---|
| 917 | !! confusingly, the linear loss terms from plankton compartments |
|---|
| 918 | !! are labelled as fdX2 when one might have expected fdX or fdX1 |
|---|
| 919 | !!---------------------------------------------------------------------- |
|---|
| 920 | !! |
|---|
| 921 | !! nitrogen |
|---|
| 922 | fregen(ji,jj) = (( (xphi * (fgmipn(ji,jj) + fgmid(ji,jj))) + & ! messy feeding |
|---|
| 923 | (xphi * (fgmepn(ji,jj) + fgmepd(ji,jj) + fgmezmi(ji,jj) + fgmed(ji,jj))) + & ! messy feeding |
|---|
| 924 | fmiexcr(ji,jj) + fmeexcr(ji,jj) + fdd(ji,jj) + & ! excretion + D remin. |
|---|
| 925 | fdpn2(ji,jj) + fdpd2(ji,jj) + fdzmi2(ji,jj) + fdzme2(ji,jj)) * fse3t(ji,jj,jk)) ! linear mortality |
|---|
| 926 | !! |
|---|
| 927 | !! silicon |
|---|
| 928 | fregensi(ji,jj) = (( fsdiss(ji,jj) + ((1.0 - xfdfrac1) * fdpds(ji,jj)) + & ! dissolution + non-lin. mortality |
|---|
| 929 | ((1.0 - xfdfrac3) * fgmepds(ji,jj)) + & ! egestion by zooplankton |
|---|
| 930 | fdpds2(ji,jj)) * fse3t(ji,jj,jk)) ! linear mortality |
|---|
| 931 | # if defined key_roam |
|---|
| 932 | !! |
|---|
| 933 | !! carbon |
|---|
| 934 | ! Doesn't look this is used - marc 10/4/17 |
|---|
| 935 | ! fregenc(ji,jj) = (( (xphi * ((xthetapn * fgmipn(ji,jj)) + fgmidc(ji,jj))) + & ! messy feeding |
|---|
| 936 | ! (xphi * ((xthetapn * fgmepn(ji,jj)) + (xthetapd * fgmepd(ji,jj)) + & ! messy feeding |
|---|
| 937 | ! (xthetazmi * fgmezmi(ji,jj)) + fgmedc(ji,jj))) + & ! messy feeding |
|---|
| 938 | ! fmiresp(ji,jj) + fmeresp(ji,jj) + fddc(ji,jj) + & ! respiration + D remin. |
|---|
| 939 | ! (xthetapn * fdpn2(ji,jj)) + (xthetapd * fdpd2(ji,jj)) + & ! linear mortality |
|---|
| 940 | ! (xthetazmi * fdzmi2(ji,jj)) + (xthetazme * fdzme2(ji,jj))) * fse3t(ji,jj,jk)) ! linear mortality |
|---|
| 941 | # endif |
|---|
| 942 | |
|---|
| 943 | ! MAYBE BUT A BREAK IN HERE, FAST-SINKINIG DETRITUS - marc 20/4/17 |
|---|
| 944 | ! (miscellaneous processes is 79 lines) |
|---|
| 945 | ENDIF |
|---|
| 946 | ENDDO |
|---|
| 947 | ENDDO |
|---|
| 948 | |
|---|
| 949 | !!------------------------------------------------------------------ |
|---|
| 950 | !! Detritus process |
|---|
| 951 | !!------------------------------------------------------------------ |
|---|
| 952 | CALL detritus( jk, iball ) |
|---|
| 953 | |
|---|
| 954 | ! Updating coming next - marc 28/4/17 |
|---|
| 955 | |
|---|
| 956 | DO jj = 2,jpjm1 |
|---|
| 957 | DO ji = 2,jpim1 |
|---|
| 958 | !! OPEN wet point IF..THEN loop |
|---|
| 959 | if (tmask(ji,jj,jk) == 1) then |
|---|
| 960 | |
|---|
| 961 | !!====================================================================== |
|---|
| 962 | !! LOCAL GRID CELL TRENDS |
|---|
| 963 | !!====================================================================== |
|---|
| 964 | !! |
|---|
| 965 | !!---------------------------------------------------------------------- |
|---|
| 966 | !! Determination of trends |
|---|
| 967 | !!---------------------------------------------------------------------- |
|---|
| 968 | !! |
|---|
| 969 | !!---------------------------------------------------------------------- |
|---|
| 970 | !! chlorophyll |
|---|
| 971 | btra(ji,jj,jpchn) = b0 * ( & |
|---|
| 972 | + ((frn(ji,jj) * fprn(ji,jj) * zphn(ji,jj)) - fgmipn(ji,jj) - fgmepn(ji,jj) - fdpn(ji,jj) - fdpn2(ji,jj)) * (fthetan(ji,jj) / xxi) ) |
|---|
| 973 | btra(ji,jj,jpchd) = b0 * ( & |
|---|
| 974 | + ((frd(ji,jj) * fprd(ji,jj) * zphd(ji,jj)) - fgmepd(ji,jj) - fdpd(ji,jj) - fdpd2(ji,jj)) * (fthetad(ji,jj) / xxi) ) |
|---|
| 975 | !! |
|---|
| 976 | !!---------------------------------------------------------------------- |
|---|
| 977 | !! phytoplankton |
|---|
| 978 | btra(ji,jj,jpphn) = b0 * ( & |
|---|
| 979 | + (fprn(ji,jj) * zphn(ji,jj)) - fgmipn(ji,jj) - fgmepn(ji,jj) - fdpn(ji,jj) - fdpn2(ji,jj) ) |
|---|
| 980 | btra(ji,jj,jpphd) = b0 * ( & |
|---|
| 981 | + (fprd(ji,jj) * zphd(ji,jj)) - fgmepd(ji,jj) - fdpd(ji,jj) - fdpd2(ji,jj) ) |
|---|
| 982 | btra(ji,jj,jppds) = b0 * ( & |
|---|
| 983 | + (fprds(ji,jj) * zpds(ji,jj)) - fgmepds(ji,jj) - fdpds(ji,jj) - fsdiss(ji,jj) - fdpds2(ji,jj) ) |
|---|
| 984 | !! |
|---|
| 985 | !!---------------------------------------------------------------------- |
|---|
| 986 | !! zooplankton |
|---|
| 987 | btra(ji,jj,jpzmi) = b0 * ( & |
|---|
| 988 | + fmigrow(ji,jj) - fgmezmi(ji,jj) - fdzmi(ji,jj) - fdzmi2(ji,jj) ) |
|---|
| 989 | btra(ji,jj,jpzme) = b0 * ( & |
|---|
| 990 | + fmegrow(ji,jj) - fdzme(ji,jj) - fdzme2(ji,jj) ) |
|---|
| 991 | !! |
|---|
| 992 | !!---------------------------------------------------------------------- |
|---|
| 993 | !! detritus |
|---|
| 994 | btra(ji,jj,jpdet) = b0 * ( & |
|---|
| 995 | + fdpn(ji,jj) + ((1.0 - xfdfrac1) * fdpd(ji,jj)) & ! mort. losses |
|---|
| 996 | + fdzmi(ji,jj) + ((1.0 - xfdfrac2) * fdzme(ji,jj)) & ! mort. losses |
|---|
| 997 | + ((1.0 - xbetan) * (finmi(ji,jj) + finme(ji,jj))) & ! assim. inefficiency |
|---|
| 998 | - fgmid(ji,jj) - fgmed(ji,jj) - fdd(ji,jj) & ! grazing and remin. |
|---|
| 999 | + ffast2slown(ji,jj) ) ! seafloor fast->slow |
|---|
| 1000 | !! |
|---|
| 1001 | !!---------------------------------------------------------------------- |
|---|
| 1002 | !! dissolved inorganic nitrogen nutrient |
|---|
| 1003 | fn_cons = 0.0 & |
|---|
| 1004 | - (fprn(ji,jj) * zphn(ji,jj)) - (fprd(ji,jj) * zphd(ji,jj)) ! primary production |
|---|
| 1005 | fn_prod = 0.0 & |
|---|
| 1006 | + (xphi * (fgmipn(ji,jj) + fgmid(ji,jj))) & ! messy feeding remin. |
|---|
| 1007 | + (xphi * (fgmepn(ji,jj) + fgmepd(ji,jj) + fgmezmi(ji,jj) + fgmed(ji,jj))) & ! messy feeding remin. |
|---|
| 1008 | + fmiexcr(ji,jj) + fmeexcr(ji,jj) + fdd(ji,jj) + freminn(ji,jj) & ! excretion and remin. |
|---|
| 1009 | + fdpn2(ji,jj) + fdpd2(ji,jj) + fdzmi2(ji,jj) + fdzme2(ji,jj) ! metab. losses |
|---|
| 1010 | !! |
|---|
| 1011 | !! riverine flux |
|---|
| 1012 | if ( jriver_n .gt. 0 ) then |
|---|
| 1013 | f_riv_loc_n(ji,jj) = f_riv_n(ji,jj) * friver_dep(jk,mbathy(ji,jj)) / fse3t(ji,jj,jk) |
|---|
| 1014 | fn_prod = fn_prod + f_riv_loc_n(ji,jj) |
|---|
| 1015 | endif |
|---|
| 1016 | !! |
|---|
| 1017 | !! benthic remineralisation |
|---|
| 1018 | if (jk.eq.mbathy(ji,jj) .and. jorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1019 | fn_prod = fn_prod + (f_benout_n(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1020 | endif |
|---|
| 1021 | !! |
|---|
| 1022 | btra(ji,jj,jpdin) = b0 * ( & |
|---|
| 1023 | fn_prod + fn_cons ) |
|---|
| 1024 | !! |
|---|
| 1025 | fnit_cons(ji,jj) = fnit_cons(ji,jj) + ( fse3t(ji,jj,jk) * ( & ! consumption of dissolved nitrogen |
|---|
| 1026 | fn_cons ) ) |
|---|
| 1027 | fnit_prod(ji,jj) = fnit_prod(ji,jj) + ( fse3t(ji,jj,jk) * ( & ! production of dissolved nitrogen |
|---|
| 1028 | fn_prod ) ) |
|---|
| 1029 | !! |
|---|
| 1030 | !!---------------------------------------------------------------------- |
|---|
| 1031 | !! dissolved silicic acid nutrient |
|---|
| 1032 | fs_cons = 0.0 & |
|---|
| 1033 | - (fprds(ji,jj) * zpds(ji,jj)) ! opal production |
|---|
| 1034 | fs_prod = 0.0 & |
|---|
| 1035 | + fsdiss(ji,jj) & ! opal dissolution |
|---|
| 1036 | + ((1.0 - xfdfrac1) * fdpds(ji,jj)) & ! mort. loss |
|---|
| 1037 | + ((1.0 - xfdfrac3) * fgmepds(ji,jj)) & ! egestion of grazed Si |
|---|
| 1038 | + freminsi(ji,jj) + fdpds2(ji,jj) ! fast diss. and metab. losses |
|---|
| 1039 | !! |
|---|
| 1040 | !! riverine flux |
|---|
| 1041 | if ( jriver_si .gt. 0 ) then |
|---|
| 1042 | f_riv_loc_si(ji,jj) = f_riv_si(ji,jj) * friver_dep(jk,mbathy(ji,jj)) / fse3t(ji,jj,jk) |
|---|
| 1043 | fs_prod = fs_prod + f_riv_loc_si(ji,jj) |
|---|
| 1044 | endif |
|---|
| 1045 | !! |
|---|
| 1046 | !! benthic remineralisation |
|---|
| 1047 | if (jk.eq.mbathy(ji,jj) .and. jinorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1048 | fs_prod = fs_prod + (f_benout_si(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1049 | endif |
|---|
| 1050 | !! |
|---|
| 1051 | btra(ji,jj,jpsil) = b0 * ( & |
|---|
| 1052 | fs_prod + fs_cons ) |
|---|
| 1053 | !! |
|---|
| 1054 | fsil_cons(ji,jj) = fsil_cons(ji,jj) + ( fse3t(ji,jj,jk) * ( & ! consumption of dissolved silicon |
|---|
| 1055 | fs_cons ) ) |
|---|
| 1056 | fsil_prod(ji,jj) = fsil_prod(ji,jj) + ( fse3t(ji,jj,jk) * ( & ! production of dissolved silicon |
|---|
| 1057 | fs_prod ) ) |
|---|
| 1058 | !! |
|---|
| 1059 | !!---------------------------------------------------------------------- |
|---|
| 1060 | !! dissolved "iron" nutrient |
|---|
| 1061 | btra(ji,jj,jpfer) = b0 * ( & |
|---|
| 1062 | + (xrfn * btra(ji,jj,jpdin)) + ffetop(ji,jj) + ffebot(ji,jj) - ffescav(ji,jj) ) |
|---|
| 1063 | |
|---|
| 1064 | # if defined key_roam |
|---|
| 1065 | !! |
|---|
| 1066 | !!---------------------------------------------------------------------- |
|---|
| 1067 | !! AXY (26/11/08): implicit detrital carbon change |
|---|
| 1068 | btra(ji,jj,jpdtc) = b0 * ( & |
|---|
| 1069 | + (xthetapn * fdpn(ji,jj)) + ((1.0 - xfdfrac1) * (xthetapd * fdpd(ji,jj))) & ! mort. losses |
|---|
| 1070 | + (xthetazmi * fdzmi(ji,jj)) + ((1.0 - xfdfrac2) * (xthetazme * fdzme(ji,jj))) & ! mort. losses |
|---|
| 1071 | + ((1.0 - xbetac) * (ficmi(ji,jj) + ficme(ji,jj))) & ! assim. inefficiency |
|---|
| 1072 | - fgmidc(ji,jj) - fgmedc(ji,jj) - fddc(ji,jj) & ! grazing and remin. |
|---|
| 1073 | + ffast2slowc(ji,jj) ) ! seafloor fast->slow |
|---|
| 1074 | !! |
|---|
| 1075 | !!---------------------------------------------------------------------- |
|---|
| 1076 | !! dissolved inorganic carbon |
|---|
| 1077 | fc_cons = 0.0 & |
|---|
| 1078 | - (xthetapn * fprn(ji,jj) * zphn(ji,jj)) - (xthetapd * fprd(ji,jj) * zphd(ji,jj)) ! primary production |
|---|
| 1079 | fc_prod = 0.0 & |
|---|
| 1080 | + (xthetapn * xphi * fgmipn(ji,jj)) + (xphi * fgmidc(ji,jj)) & ! messy feeding remin |
|---|
| 1081 | + (xthetapn * xphi * fgmepn(ji,jj)) + (xthetapd * xphi * fgmepd(ji,jj)) & ! messy feeding remin |
|---|
| 1082 | + (xthetazmi * xphi * fgmezmi(ji,jj)) + (xphi * fgmedc(ji,jj)) & ! messy feeding remin |
|---|
| 1083 | + fmiresp(ji,jj) + fmeresp(ji,jj) + fddc(ji,jj) + freminc(ji,jj) + (xthetapn * fdpn2(ji,jj)) & ! resp., remin., losses |
|---|
| 1084 | + (xthetapd * fdpd2(ji,jj)) + (xthetazmi * fdzmi2(ji,jj)) & ! losses |
|---|
| 1085 | + (xthetazme * fdzme2(ji,jj)) ! losses |
|---|
| 1086 | !! |
|---|
| 1087 | !! riverine flux |
|---|
| 1088 | if ( jriver_c .gt. 0 ) then |
|---|
| 1089 | f_riv_loc_c(ji,jj) = f_riv_c(ji,jj) * friver_dep(jk,mbathy(ji,jj)) / fse3t(ji,jj,jk) |
|---|
| 1090 | fc_prod = fc_prod + f_riv_loc_c(ji,jj) |
|---|
| 1091 | endif |
|---|
| 1092 | !! |
|---|
| 1093 | !! benthic remineralisation |
|---|
| 1094 | if (jk.eq.mbathy(ji,jj) .and. jorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1095 | fc_prod = fc_prod + (f_benout_c(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1096 | endif |
|---|
| 1097 | if (jk.eq.mbathy(ji,jj) .and. jinorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1098 | fc_prod = fc_prod + (f_benout_ca(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1099 | endif |
|---|
| 1100 | !! |
|---|
| 1101 | !! community respiration (does not include CaCO3 terms - obviously!) |
|---|
| 1102 | fcomm_resp(ji,jj) = fcomm_resp(ji,jj) + fc_prod |
|---|
| 1103 | !! |
|---|
| 1104 | !! CaCO3 |
|---|
| 1105 | fc_prod = fc_prod - ftempca(ji,jj) + freminca(ji,jj) |
|---|
| 1106 | !! |
|---|
| 1107 | !! riverine flux |
|---|
| 1108 | if ( jk .eq. 1 .and. jriver_c .gt. 0 ) then |
|---|
| 1109 | fc_prod = fc_prod + f_riv_c(ji,jj) |
|---|
| 1110 | endif |
|---|
| 1111 | !! |
|---|
| 1112 | btra(ji,jj,jpdic) = b0 * ( & |
|---|
| 1113 | fc_prod + fc_cons ) |
|---|
| 1114 | !! |
|---|
| 1115 | fcar_cons(ji,jj) = fcar_cons(ji,jj) + ( fse3t(ji,jj,jk) * ( & ! consumption of dissolved carbon |
|---|
| 1116 | fc_cons ) ) |
|---|
| 1117 | fcar_prod(ji,jj) = fcar_prod(ji,jj) + ( fse3t(ji,jj,jk) * ( & ! production of dissolved carbon |
|---|
| 1118 | fc_prod ) ) |
|---|
| 1119 | !! |
|---|
| 1120 | !!---------------------------------------------------------------------- |
|---|
| 1121 | !! alkalinity |
|---|
| 1122 | fa_prod = 0.0 & |
|---|
| 1123 | + (2.0 * freminca(ji,jj)) ! CaCO3 dissolution |
|---|
| 1124 | fa_cons = 0.0 & |
|---|
| 1125 | - (2.0 * ftempca(ji,jj)) ! CaCO3 production |
|---|
| 1126 | !! |
|---|
| 1127 | !! riverine flux |
|---|
| 1128 | if ( jriver_alk .gt. 0 ) then |
|---|
| 1129 | f_riv_loc_alk(ji,jj) = f_riv_alk(ji,jj) * friver_dep(jk,mbathy(ji,jj)) / fse3t(ji,jj,jk) |
|---|
| 1130 | fa_prod = fa_prod + f_riv_loc_alk(ji,jj) |
|---|
| 1131 | endif |
|---|
| 1132 | !! |
|---|
| 1133 | !! benthic remineralisation |
|---|
| 1134 | if (jk.eq.mbathy(ji,jj) .and. jinorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1135 | fa_prod = fa_prod + (2.0 * f_benout_ca(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1136 | endif |
|---|
| 1137 | !! |
|---|
| 1138 | btra(ji,jj,jpalk) = b0 * ( & |
|---|
| 1139 | fa_prod + fa_cons ) |
|---|
| 1140 | !! |
|---|
| 1141 | !!---------------------------------------------------------------------- |
|---|
| 1142 | !! oxygen (has protection at low O2 concentrations; OCMIP-2 style) |
|---|
| 1143 | fo2_prod(ji,jj) = 0.0 & |
|---|
| 1144 | + (xthetanit * fprn(ji,jj) * zphn(ji,jj)) & ! Pn primary production, N |
|---|
| 1145 | + (xthetanit * fprd(ji,jj) * zphd(ji,jj)) & ! Pd primary production, N |
|---|
| 1146 | + (xthetarem * xthetapn * fprn(ji,jj) * zphn(ji,jj)) & ! Pn primary production, C |
|---|
| 1147 | + (xthetarem * xthetapd * fprd(ji,jj) * zphd(ji,jj)) ! Pd primary production, C |
|---|
| 1148 | fo2_ncons(ji,jj) = 0.0 & |
|---|
| 1149 | - (xthetanit * xphi * fgmipn(ji,jj)) & ! Pn messy feeding remin., N |
|---|
| 1150 | - (xthetanit * xphi * fgmid(ji,jj)) & ! D messy feeding remin., N |
|---|
| 1151 | - (xthetanit * xphi * fgmepn(ji,jj)) & ! Pn messy feeding remin., N |
|---|
| 1152 | - (xthetanit * xphi * fgmepd(ji,jj)) & ! Pd messy feeding remin., N |
|---|
| 1153 | - (xthetanit * xphi * fgmezmi(ji,jj)) & ! Zi messy feeding remin., N |
|---|
| 1154 | - (xthetanit * xphi * fgmed(ji,jj)) & ! D messy feeding remin., N |
|---|
| 1155 | - (xthetanit * fmiexcr(ji,jj)) & ! microzoo excretion, N |
|---|
| 1156 | - (xthetanit * fmeexcr(ji,jj)) & ! mesozoo excretion, N |
|---|
| 1157 | - (xthetanit * fdd(ji,jj)) & ! slow detritus remin., N |
|---|
| 1158 | - (xthetanit * freminn(ji,jj)) & ! fast detritus remin., N |
|---|
| 1159 | - (xthetanit * fdpn2(ji,jj)) & ! Pn losses, N |
|---|
| 1160 | - (xthetanit * fdpd2(ji,jj)) & ! Pd losses, N |
|---|
| 1161 | - (xthetanit * fdzmi2(ji,jj)) & ! Zmi losses, N |
|---|
| 1162 | - (xthetanit * fdzme2(ji,jj)) ! Zme losses, N |
|---|
| 1163 | !! |
|---|
| 1164 | !! benthic remineralisation |
|---|
| 1165 | if (jk.eq.mbathy(ji,jj) .and. jorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1166 | fo2_ncons(ji,jj) = fo2_ncons(ji,jj) - (xthetanit * f_benout_n(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1167 | endif |
|---|
| 1168 | fo2_ccons(ji,jj) = 0.0 & |
|---|
| 1169 | - (xthetarem * xthetapn * xphi * fgmipn(ji,jj)) & ! Pn messy feeding remin., C |
|---|
| 1170 | - (xthetarem * xphi * fgmidc(ji,jj)) & ! D messy feeding remin., C |
|---|
| 1171 | - (xthetarem * xthetapn * xphi * fgmepn(ji,jj)) & ! Pn messy feeding remin., C |
|---|
| 1172 | - (xthetarem * xthetapd * xphi * fgmepd(ji,jj)) & ! Pd messy feeding remin., C |
|---|
| 1173 | - (xthetarem * xthetazmi * xphi * fgmezmi(ji,jj)) & ! Zi messy feeding remin., C |
|---|
| 1174 | - (xthetarem * xphi * fgmedc(ji,jj)) & ! D messy feeding remin., C |
|---|
| 1175 | - (xthetarem * fmiresp(ji,jj)) & ! microzoo respiration, C |
|---|
| 1176 | - (xthetarem * fmeresp(ji,jj)) & ! mesozoo respiration, C |
|---|
| 1177 | - (xthetarem * fddc(ji,jj)) & ! slow detritus remin., C |
|---|
| 1178 | - (xthetarem * freminc(ji,jj)) & ! fast detritus remin., C |
|---|
| 1179 | - (xthetarem * xthetapn * fdpn2(ji,jj)) & ! Pn losses, C |
|---|
| 1180 | - (xthetarem * xthetapd * fdpd2(ji,jj)) & ! Pd losses, C |
|---|
| 1181 | - (xthetarem * xthetazmi * fdzmi2(ji,jj)) & ! Zmi losses, C |
|---|
| 1182 | - (xthetarem * xthetazme * fdzme2(ji,jj)) ! Zme losses, C |
|---|
| 1183 | !! |
|---|
| 1184 | !! benthic remineralisation |
|---|
| 1185 | if (jk.eq.mbathy(ji,jj) .and. jorgben.eq.1 .and. ibenthic.eq.1) then |
|---|
| 1186 | fo2_ccons(ji,jj) = fo2_ccons(ji,jj) - (xthetarem * f_benout_c(ji,jj) / fse3t(ji,jj,jk)) |
|---|
| 1187 | endif |
|---|
| 1188 | fo2_cons(ji,jj) = fo2_ncons(ji,jj) + fo2_ccons(ji,jj) |
|---|
| 1189 | !! |
|---|
| 1190 | !! is this a suboxic zone? |
|---|
| 1191 | if (zoxy(ji,jj).lt.xo2min) then ! deficient O2; production fluxes only |
|---|
| 1192 | btra(ji,jj,jpoxy) = b0 * ( & |
|---|
| 1193 | fo2_prod(ji,jj) ) |
|---|
| 1194 | foxy_prod(ji,jj) = foxy_prod(ji,jj) + ( fse3t(ji,jj,jk) * fo2_prod(ji,jj) ) |
|---|
| 1195 | foxy_anox(ji,jj) = foxy_anox(ji,jj) + ( fse3t(ji,jj,jk) * fo2_cons(ji,jj) ) |
|---|
| 1196 | else ! sufficient O2; production + consumption fluxes |
|---|
| 1197 | btra(ji,jj,jpoxy) = b0 * ( & |
|---|
| 1198 | fo2_prod(ji,jj) + fo2_cons(ji,jj) ) |
|---|
| 1199 | foxy_prod(ji,jj) = foxy_prod(ji,jj) + ( fse3t(ji,jj,jk) * fo2_prod(ji,jj) ) |
|---|
| 1200 | foxy_cons(ji,jj) = foxy_cons(ji,jj) + ( fse3t(ji,jj,jk) * fo2_cons(ji,jj) ) |
|---|
| 1201 | endif |
|---|
| 1202 | !! |
|---|
| 1203 | !! air-sea fluxes (if this is the surface box) |
|---|
| 1204 | if (jk.eq.1) then |
|---|
| 1205 | !! |
|---|
| 1206 | !! CO2 flux |
|---|
| 1207 | btra(ji,jj,jpdic) = btra(ji,jj,jpdic) + (b0 * f_co2flux(ji,jj)) |
|---|
| 1208 | !! |
|---|
| 1209 | !! O2 flux (mol/m3/s -> mmol/m3/d) |
|---|
| 1210 | btra(ji,jj,jpoxy) = btra(ji,jj,jpoxy) + (b0 * f_o2flux(ji,jj)) |
|---|
| 1211 | endif |
|---|
| 1212 | # endif |
|---|
| 1213 | |
|---|
| 1214 | # if defined key_debug_medusa |
|---|
| 1215 | !! report state variable fluxes (not including fast-sinking detritus) |
|---|
| 1216 | if (idf.eq.1.AND.idfval.eq.1) then |
|---|
| 1217 | IF (lwp) write (numout,*) '------------------------------' |
|---|
| 1218 | IF (lwp) write (numout,*) 'btra(ji,jj,jpchn)(',jk,') = ', btra(ji,jj,jpchn) |
|---|
| 1219 | IF (lwp) write (numout,*) 'btra(ji,jj,jpchd)(',jk,') = ', btra(ji,jj,jpchd) |
|---|
| 1220 | IF (lwp) write (numout,*) 'btra(ji,jj,jpphn)(',jk,') = ', btra(ji,jj,jpphn) |
|---|
| 1221 | IF (lwp) write (numout,*) 'btra(ji,jj,jpphd)(',jk,') = ', btra(ji,jj,jpphd) |
|---|
| 1222 | IF (lwp) write (numout,*) 'btra(ji,jj,jppds)(',jk,') = ', btra(ji,jj,jppds) |
|---|
| 1223 | IF (lwp) write (numout,*) 'btra(ji,jj,jpzmi)(',jk,') = ', btra(ji,jj,jpzmi) |
|---|
| 1224 | IF (lwp) write (numout,*) 'btra(ji,jj,jpzme)(',jk,') = ', btra(ji,jj,jpzme) |
|---|
| 1225 | IF (lwp) write (numout,*) 'btra(ji,jj,jpdet)(',jk,') = ', btra(ji,jj,jpdet) |
|---|
| 1226 | IF (lwp) write (numout,*) 'btra(ji,jj,jpdin)(',jk,') = ', btra(ji,jj,jpdin) |
|---|
| 1227 | IF (lwp) write (numout,*) 'btra(ji,jj,jpsil)(',jk,') = ', btra(ji,jj,jpsil) |
|---|
| 1228 | IF (lwp) write (numout,*) 'btra(ji,jj,jpfer)(',jk,') = ', btra(ji,jj,jpfer) |
|---|
| 1229 | # if defined key_roam |
|---|
| 1230 | IF (lwp) write (numout,*) 'btra(ji,jj,jpdtc)(',jk,') = ', btra(ji,jj,jpdtc) |
|---|
| 1231 | IF (lwp) write (numout,*) 'btra(ji,jj,jpdic)(',jk,') = ', btra(ji,jj,jpdic) |
|---|
| 1232 | IF (lwp) write (numout,*) 'btra(ji,jj,jpalk)(',jk,') = ', btra(ji,jj,jpalk) |
|---|
| 1233 | IF (lwp) write (numout,*) 'btra(ji,jj,jpoxy)(',jk,') = ', btra(ji,jj,jpoxy) |
|---|
| 1234 | # endif |
|---|
| 1235 | endif |
|---|
| 1236 | # endif |
|---|
| 1237 | |
|---|
| 1238 | !!---------------------------------------------------------------------- |
|---|
| 1239 | !! Integrate calculated fluxes for mass balance |
|---|
| 1240 | !!---------------------------------------------------------------------- |
|---|
| 1241 | !! |
|---|
| 1242 | !! === nitrogen === |
|---|
| 1243 | fflx_n(ji,jj) = fflx_n(ji,jj) + & |
|---|
| 1244 | fse3t(ji,jj,jk) * ( btra(ji,jj,jpphn) + btra(ji,jj,jpphd) + btra(ji,jj,jpzmi) + btra(ji,jj,jpzme) + btra(ji,jj,jpdet) + btra(ji,jj,jpdin) ) |
|---|
| 1245 | !! === silicon === |
|---|
| 1246 | fflx_si(ji,jj) = fflx_si(ji,jj) + & |
|---|
| 1247 | fse3t(ji,jj,jk) * ( btra(ji,jj,jppds) + btra(ji,jj,jpsil) ) |
|---|
| 1248 | !! === iron === |
|---|
| 1249 | fflx_fe(ji,jj) = fflx_fe(ji,jj) + & |
|---|
| 1250 | fse3t(ji,jj,jk) * ( ( xrfn * ( btra(ji,jj,jpphn) + btra(ji,jj,jpphd) + btra(ji,jj,jpzmi) + btra(ji,jj,jpzme) + btra(ji,jj,jpdet)) ) + btra(ji,jj,jpfer) ) |
|---|
| 1251 | # if defined key_roam |
|---|
| 1252 | !! === carbon === |
|---|
| 1253 | fflx_c(ji,jj) = fflx_c(ji,jj) + & |
|---|
| 1254 | fse3t(ji,jj,jk) * ( (xthetapn * btra(ji,jj,jpphn)) + (xthetapd * btra(ji,jj,jpphd)) + & |
|---|
| 1255 | (xthetazmi * btra(ji,jj,jpzmi)) + (xthetazme * btra(ji,jj,jpzme)) + btra(ji,jj,jpdtc) + btra(ji,jj,jpdic) ) |
|---|
| 1256 | !! === alkalinity === |
|---|
| 1257 | fflx_a(ji,jj) = fflx_a(ji,jj) + & |
|---|
| 1258 | fse3t(ji,jj,jk) * ( btra(ji,jj,jpalk) ) |
|---|
| 1259 | !! === oxygen === |
|---|
| 1260 | fflx_o2(ji,jj) = fflx_o2(ji,jj) + & |
|---|
| 1261 | fse3t(ji,jj,jk) * ( btra(ji,jj,jpoxy) ) |
|---|
| 1262 | # endif |
|---|
| 1263 | |
|---|
| 1264 | !!---------------------------------------------------------------------- |
|---|
| 1265 | !! Apply calculated tracer fluxes |
|---|
| 1266 | !!---------------------------------------------------------------------- |
|---|
| 1267 | !! |
|---|
| 1268 | !! units: [unit of tracer] per second (fluxes are calculated above per day) |
|---|
| 1269 | !! |
|---|
| 1270 | ibio_switch = 1 |
|---|
| 1271 | # if defined key_gulf_finland |
|---|
| 1272 | !! AXY (17/05/13): fudge in a Gulf of Finland correction; uses longitude- |
|---|
| 1273 | !! latitude range to establish if this is a Gulf of Finland |
|---|
| 1274 | !! grid cell; if so, then BGC fluxes are ignored (though |
|---|
| 1275 | !! still calculated); for reference, this is meant to be a |
|---|
| 1276 | !! temporary fix to see if all of my problems can be done |
|---|
| 1277 | !! away with if I switch off BGC fluxes in the Gulf of |
|---|
| 1278 | !! Finland, which currently appears the source of trouble |
|---|
| 1279 | if ( glamt(ji,jj).gt.24.7 .and. glamt(ji,jj).lt.27.8 .and. & |
|---|
| 1280 | & gphit(ji,jj).gt.59.2 .and. gphit(ji,jj).lt.60.2 ) then |
|---|
| 1281 | ibio_switch = 0 |
|---|
| 1282 | endif |
|---|
| 1283 | # endif |
|---|
| 1284 | if (ibio_switch.eq.1) then |
|---|
| 1285 | tra(ji,jj,jk,jpchn) = tra(ji,jj,jk,jpchn) + (btra(ji,jj,jpchn) / 86400.) |
|---|
| 1286 | tra(ji,jj,jk,jpchd) = tra(ji,jj,jk,jpchd) + (btra(ji,jj,jpchd) / 86400.) |
|---|
| 1287 | tra(ji,jj,jk,jpphn) = tra(ji,jj,jk,jpphn) + (btra(ji,jj,jpphn) / 86400.) |
|---|
| 1288 | tra(ji,jj,jk,jpphd) = tra(ji,jj,jk,jpphd) + (btra(ji,jj,jpphd) / 86400.) |
|---|
| 1289 | tra(ji,jj,jk,jppds) = tra(ji,jj,jk,jppds) + (btra(ji,jj,jppds) / 86400.) |
|---|
| 1290 | tra(ji,jj,jk,jpzmi) = tra(ji,jj,jk,jpzmi) + (btra(ji,jj,jpzmi) / 86400.) |
|---|
| 1291 | tra(ji,jj,jk,jpzme) = tra(ji,jj,jk,jpzme) + (btra(ji,jj,jpzme) / 86400.) |
|---|
| 1292 | tra(ji,jj,jk,jpdet) = tra(ji,jj,jk,jpdet) + (btra(ji,jj,jpdet) / 86400.) |
|---|
| 1293 | tra(ji,jj,jk,jpdin) = tra(ji,jj,jk,jpdin) + (btra(ji,jj,jpdin) / 86400.) |
|---|
| 1294 | tra(ji,jj,jk,jpsil) = tra(ji,jj,jk,jpsil) + (btra(ji,jj,jpsil) / 86400.) |
|---|
| 1295 | tra(ji,jj,jk,jpfer) = tra(ji,jj,jk,jpfer) + (btra(ji,jj,jpfer) / 86400.) |
|---|
| 1296 | # if defined key_roam |
|---|
| 1297 | tra(ji,jj,jk,jpdtc) = tra(ji,jj,jk,jpdtc) + (btra(ji,jj,jpdtc) / 86400.) |
|---|
| 1298 | tra(ji,jj,jk,jpdic) = tra(ji,jj,jk,jpdic) + (btra(ji,jj,jpdic) / 86400.) |
|---|
| 1299 | tra(ji,jj,jk,jpalk) = tra(ji,jj,jk,jpalk) + (btra(ji,jj,jpalk) / 86400.) |
|---|
| 1300 | tra(ji,jj,jk,jpoxy) = tra(ji,jj,jk,jpoxy) + (btra(ji,jj,jpoxy) / 86400.) |
|---|
| 1301 | # endif |
|---|
| 1302 | endif |
|---|
| 1303 | |
|---|
| 1304 | !! AXY (18/11/16): CMIP6 diagnostics |
|---|
| 1305 | IF( med_diag%FBDDTALK%dgsave ) THEN |
|---|
| 1306 | fbddtalk(ji,jj) = fbddtalk(ji,jj) + (btra(ji,jj,jpalk) * fse3t(ji,jj,jk)) |
|---|
| 1307 | ENDIF |
|---|
| 1308 | IF( med_diag%FBDDTDIC%dgsave ) THEN |
|---|
| 1309 | fbddtdic(ji,jj) = fbddtdic(ji,jj) + (btra(ji,jj,jpdic) * fse3t(ji,jj,jk)) |
|---|
| 1310 | ENDIF |
|---|
| 1311 | IF( med_diag%FBDDTDIFE%dgsave ) THEN |
|---|
| 1312 | fbddtdife(ji,jj) = fbddtdife(ji,jj) + (btra(ji,jj,jpfer) * fse3t(ji,jj,jk)) |
|---|
| 1313 | ENDIF |
|---|
| 1314 | IF( med_diag%FBDDTDIN%dgsave ) THEN |
|---|
| 1315 | fbddtdin(ji,jj) = fbddtdin(ji,jj) + (btra(ji,jj,jpdin) * fse3t(ji,jj,jk)) |
|---|
| 1316 | ENDIF |
|---|
| 1317 | IF( med_diag%FBDDTDISI%dgsave ) THEN |
|---|
| 1318 | fbddtdisi(ji,jj) = fbddtdisi(ji,jj) + (btra(ji,jj,jpsil) * fse3t(ji,jj,jk)) |
|---|
| 1319 | ENDIF |
|---|
| 1320 | !! |
|---|
| 1321 | IF( med_diag%BDDTALK3%dgsave ) THEN |
|---|
| 1322 | bddtalk3(ji,jj,jk) = btra(ji,jj,jpalk) |
|---|
| 1323 | ENDIF |
|---|
| 1324 | IF( med_diag%BDDTDIC3%dgsave ) THEN |
|---|
| 1325 | bddtdic3(ji,jj,jk) = btra(ji,jj,jpdic) |
|---|
| 1326 | ENDIF |
|---|
| 1327 | IF( med_diag%BDDTDIFE3%dgsave ) THEN |
|---|
| 1328 | bddtdife3(ji,jj,jk) = btra(ji,jj,jpfer) |
|---|
| 1329 | ENDIF |
|---|
| 1330 | IF( med_diag%BDDTDIN3%dgsave ) THEN |
|---|
| 1331 | bddtdin3(ji,jj,jk) = btra(ji,jj,jpdin) |
|---|
| 1332 | ENDIF |
|---|
| 1333 | IF( med_diag%BDDTDISI3%dgsave ) THEN |
|---|
| 1334 | bddtdisi3(ji,jj,jk) = btra(ji,jj,jpsil) |
|---|
| 1335 | ENDIF |
|---|
| 1336 | |
|---|
| 1337 | # if defined key_debug_medusa |
|---|
| 1338 | IF (lwp) write (numout,*) '------' |
|---|
| 1339 | IF (lwp) write (numout,*) 'trc_bio_medusa: end all calculations' |
|---|
| 1340 | IF (lwp) write (numout,*) 'trc_bio_medusa: now outputs' |
|---|
| 1341 | CALL flush(numout) |
|---|
| 1342 | # endif |
|---|
| 1343 | |
|---|
| 1344 | # if defined key_axy_nancheck |
|---|
| 1345 | !!---------------------------------------------------------------------- |
|---|
| 1346 | !! Check calculated tracer fluxes |
|---|
| 1347 | !!---------------------------------------------------------------------- |
|---|
| 1348 | !! |
|---|
| 1349 | DO jn = 1,jptra |
|---|
| 1350 | fq0 = btra(ji,jj,jn) |
|---|
| 1351 | !! AXY (30/01/14): "isnan" problem on HECTOR |
|---|
| 1352 | !! if (fq0 /= fq0 ) then |
|---|
| 1353 | if ( ieee_is_nan( fq0 ) ) then |
|---|
| 1354 | !! there's a NaN here |
|---|
| 1355 | if (lwp) write(numout,*) 'NAN detected in btra(ji,jj,', ji, ',', & |
|---|
| 1356 | & jj, ',', jk, ',', jn, ') at time', kt |
|---|
| 1357 | CALL ctl_stop( 'trcbio_medusa, NAN in btra field' ) |
|---|
| 1358 | endif |
|---|
| 1359 | ENDDO |
|---|
| 1360 | DO jn = 1,jptra |
|---|
| 1361 | fq0 = tra(ji,jj,jk,jn) |
|---|
| 1362 | !! AXY (30/01/14): "isnan" problem on HECTOR |
|---|
| 1363 | !! if (fq0 /= fq0 ) then |
|---|
| 1364 | if ( ieee_is_nan( fq0 ) ) then |
|---|
| 1365 | !! there's a NaN here |
|---|
| 1366 | if (lwp) write(numout,*) 'NAN detected in tra(', ji, ',', & |
|---|
| 1367 | & jj, ',', jk, ',', jn, ') at time', kt |
|---|
| 1368 | CALL ctl_stop( 'trcbio_medusa, NAN in tra field' ) |
|---|
| 1369 | endif |
|---|
| 1370 | ENDDO |
|---|
| 1371 | CALL flush(numout) |
|---|
| 1372 | # endif |
|---|
| 1373 | |
|---|
| 1374 | !!---------------------------------------------------------------------- |
|---|
| 1375 | !! Check model conservation |
|---|
| 1376 | !! these terms merely sum up the tendency terms of the relevant |
|---|
| 1377 | !! state variables, which should sum to zero; the iron cycle is |
|---|
| 1378 | !! complicated by fluxes that add (aeolian deposition and seafloor |
|---|
| 1379 | !! remineralisation) and remove (scavenging) dissolved iron from |
|---|
| 1380 | !! the model (i.e. the sum of iron fluxes is unlikely to be zero) |
|---|
| 1381 | !!---------------------------------------------------------------------- |
|---|
| 1382 | !! |
|---|
| 1383 | !! fnit0 = btra(ji,jj,jpphn) + btra(ji,jj,jpphd) + btra(ji,jj,jpzmi) + btra(ji,jj,jpzme) + btra(ji,jj,jpdet) + btra(ji,jj,jpdin) ! + ftempn(ji,jj) |
|---|
| 1384 | !! fsil0 = btra(ji,jj,jppds) + btra(ji,jj,jpsil) ! + ftempsi(ji,jj) |
|---|
| 1385 | !! ffer0 = (xrfn * fnit0) + btra(ji,jj,jpfer) |
|---|
| 1386 | # if defined key_roam |
|---|
| 1387 | !! fcar0 = 0. |
|---|
| 1388 | !! falk0 = 0. |
|---|
| 1389 | !! foxy0 = 0. |
|---|
| 1390 | # endif |
|---|
| 1391 | !! |
|---|
| 1392 | !! if (kt/240*240.eq.kt) then |
|---|
| 1393 | !! if (ji.eq.2.and.jj.eq.2.and.jk.eq.1) then |
|---|
| 1394 | !! IF (lwp) write (*,*) '*******!MEDUSA Conservation!*******',kt |
|---|
| 1395 | # if defined key_roam |
|---|
| 1396 | !! IF (lwp) write (*,*) fnit0,fsil0,ffer0,fcar0,falk0,foxy0 |
|---|
| 1397 | # else |
|---|
| 1398 | !! IF (lwp) write (*,*) fnit0,fsil0,ffer0 |
|---|
| 1399 | # endif |
|---|
| 1400 | !! endif |
|---|
| 1401 | !! endif |
|---|
| 1402 | |
|---|
| 1403 | ! MAYBE BUT A BREAK IN HERE - marc 20/4/17 |
|---|
| 1404 | ! (this would make the previous section about 470 lines and the one below |
|---|
| 1405 | ! about 700 lines) |
|---|
| 1406 | ENDIF |
|---|
| 1407 | ENDDO |
|---|
| 1408 | ENDDO |
|---|
| 1409 | |
|---|
| 1410 | DO jj = 2,jpjm1 |
|---|
| 1411 | DO ji = 2,jpim1 |
|---|
| 1412 | !! OPEN wet point IF..THEN loop |
|---|
| 1413 | if (tmask(ji,jj,jk) == 1) then |
|---|
| 1414 | |
|---|
| 1415 | # if defined key_trc_diabio |
|---|
| 1416 | !!====================================================================== |
|---|
| 1417 | !! LOCAL GRID CELL DIAGNOSTICS |
|---|
| 1418 | !!====================================================================== |
|---|
| 1419 | !! |
|---|
| 1420 | !!---------------------------------------------------------------------- |
|---|
| 1421 | !! Full diagnostics key_trc_diabio: |
|---|
| 1422 | !! LOBSTER and PISCES support full diagnistics option key_trc_diabio |
|---|
| 1423 | !! which gives an option of FULL output of biological sourses and sinks. |
|---|
| 1424 | !! I cannot see any reason for doing this. If needed, it can be done |
|---|
| 1425 | !! as shown below. |
|---|
| 1426 | !!---------------------------------------------------------------------- |
|---|
| 1427 | !! |
|---|
| 1428 | IF(lwp) WRITE(numout,*) ' MEDUSA does not support key_trc_diabio' |
|---|
| 1429 | !! trbio(ji,jj,jk, 1) = fprn(ji,jj) |
|---|
| 1430 | # endif |
|---|
| 1431 | |
|---|
| 1432 | IF( lk_iomput .AND. .NOT. ln_diatrc ) THEN |
|---|
| 1433 | !!---------------------------------------------------------------------- |
|---|
| 1434 | !! Add in XML diagnostics stuff |
|---|
| 1435 | !!---------------------------------------------------------------------- |
|---|
| 1436 | !! |
|---|
| 1437 | !! ** 2D diagnostics |
|---|
| 1438 | # if defined key_debug_medusa |
|---|
| 1439 | IF (lwp) write (numout,*) 'trc_bio_medusa: diag in ij-jj-jk loop' |
|---|
| 1440 | CALL flush(numout) |
|---|
| 1441 | # endif |
|---|
| 1442 | IF ( med_diag%PRN%dgsave ) THEN |
|---|
| 1443 | fprn2d(ji,jj) = fprn2d(ji,jj) + (fprn(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1444 | ENDIF |
|---|
| 1445 | IF ( med_diag%MPN%dgsave ) THEN |
|---|
| 1446 | fdpn2d(ji,jj) = fdpn2d(ji,jj) + (fdpn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1447 | ENDIF |
|---|
| 1448 | IF ( med_diag%PRD%dgsave ) THEN |
|---|
| 1449 | fprd2d(ji,jj) = fprd2d(ji,jj) + (fprd(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1450 | ENDIF |
|---|
| 1451 | IF( med_diag%MPD%dgsave ) THEN |
|---|
| 1452 | fdpd2d(ji,jj) = fdpd2d(ji,jj) + (fdpd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1453 | ENDIF |
|---|
| 1454 | ! IF( med_diag%DSED%dgsave ) THEN |
|---|
| 1455 | ! CALL iom_put( "DSED" , ftot_n ) |
|---|
| 1456 | ! ENDIF |
|---|
| 1457 | IF( med_diag%OPAL%dgsave ) THEN |
|---|
| 1458 | fprds2d(ji,jj) = fprds2d(ji,jj) + (fprds(ji,jj) * zpds(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1459 | ENDIF |
|---|
| 1460 | IF( med_diag%OPALDISS%dgsave ) THEN |
|---|
| 1461 | fsdiss2d(ji,jj) = fsdiss2d(ji,jj) + (fsdiss(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1462 | ENDIF |
|---|
| 1463 | IF( med_diag%GMIPn%dgsave ) THEN |
|---|
| 1464 | fgmipn2d(ji,jj) = fgmipn2d(ji,jj) + (fgmipn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1465 | ENDIF |
|---|
| 1466 | IF( med_diag%GMID%dgsave ) THEN |
|---|
| 1467 | fgmid2d(ji,jj) = fgmid2d(ji,jj) + (fgmid(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1468 | ENDIF |
|---|
| 1469 | IF( med_diag%MZMI%dgsave ) THEN |
|---|
| 1470 | fdzmi2d(ji,jj) = fdzmi2d(ji,jj) + (fdzmi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1471 | ENDIF |
|---|
| 1472 | IF( med_diag%GMEPN%dgsave ) THEN |
|---|
| 1473 | fgmepn2d(ji,jj) = fgmepn2d(ji,jj) + (fgmepn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1474 | ENDIF |
|---|
| 1475 | IF( med_diag%GMEPD%dgsave ) THEN |
|---|
| 1476 | fgmepd2d(ji,jj) = fgmepd2d(ji,jj) + (fgmepd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1477 | ENDIF |
|---|
| 1478 | IF( med_diag%GMEZMI%dgsave ) THEN |
|---|
| 1479 | fgmezmi2d(ji,jj) = fgmezmi2d(ji,jj) + (fgmezmi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1480 | ENDIF |
|---|
| 1481 | IF( med_diag%GMED%dgsave ) THEN |
|---|
| 1482 | fgmed2d(ji,jj) = fgmed2d(ji,jj) + (fgmed(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1483 | ENDIF |
|---|
| 1484 | IF( med_diag%MZME%dgsave ) THEN |
|---|
| 1485 | fdzme2d(ji,jj) = fdzme2d(ji,jj) + (fdzme(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1486 | ENDIF |
|---|
| 1487 | ! IF( med_diag%DEXP%dgsave ) THEN |
|---|
| 1488 | ! CALL iom_put( "DEXP" , ftot_n ) |
|---|
| 1489 | ! ENDIF |
|---|
| 1490 | IF( med_diag%DETN%dgsave ) THEN |
|---|
| 1491 | fslown2d(ji,jj) = fslown2d(ji,jj) + (fslown(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1492 | ENDIF |
|---|
| 1493 | IF( med_diag%MDET%dgsave ) THEN |
|---|
| 1494 | fdd2d(ji,jj) = fdd2d(ji,jj) + (fdd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1495 | ENDIF |
|---|
| 1496 | IF( med_diag%AEOLIAN%dgsave ) THEN |
|---|
| 1497 | ffetop2d(ji,jj) = ffetop2d(ji,jj) + (ffetop(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1498 | ENDIF |
|---|
| 1499 | IF( med_diag%BENTHIC%dgsave ) THEN |
|---|
| 1500 | ffebot2d(ji,jj) = ffebot2d(ji,jj) + (ffebot(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1501 | ENDIF |
|---|
| 1502 | IF( med_diag%SCAVENGE%dgsave ) THEN |
|---|
| 1503 | ffescav2d(ji,jj) = ffescav2d(ji,jj) + (ffescav(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1504 | ENDIF |
|---|
| 1505 | IF( med_diag%PN_JLIM%dgsave ) THEN |
|---|
| 1506 | ! fjln2d(ji,jj) = fjln2d(ji,jj) + (fjln(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1507 | fjln2d(ji,jj) = fjln2d(ji,jj) + (fjlim_pn(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1508 | ENDIF |
|---|
| 1509 | IF( med_diag%PN_NLIM%dgsave ) THEN |
|---|
| 1510 | fnln2d(ji,jj) = fnln2d(ji,jj) + (fnln(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1511 | ENDIF |
|---|
| 1512 | IF( med_diag%PN_FELIM%dgsave ) THEN |
|---|
| 1513 | ffln2d(ji,jj) = ffln2d(ji,jj) + (ffln2(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1514 | ENDIF |
|---|
| 1515 | IF( med_diag%PD_JLIM%dgsave ) THEN |
|---|
| 1516 | ! fjld2d(ji,jj) = fjld2d(ji,jj) + (fjld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1517 | fjld2d(ji,jj) = fjld2d(ji,jj) + (fjlim_pd(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1518 | ENDIF |
|---|
| 1519 | IF( med_diag%PD_NLIM%dgsave ) THEN |
|---|
| 1520 | fnld2d(ji,jj) = fnld2d(ji,jj) + (fnld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1521 | ENDIF |
|---|
| 1522 | IF( med_diag%PD_FELIM%dgsave ) THEN |
|---|
| 1523 | ffld2d(ji,jj) = ffld2d(ji,jj) + (ffld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1524 | ENDIF |
|---|
| 1525 | IF( med_diag%PD_SILIM%dgsave ) THEN |
|---|
| 1526 | fsld2d2(ji,jj) = fsld2d2(ji,jj) + (fsld2(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1527 | ENDIF |
|---|
| 1528 | IF( med_diag%PDSILIM2%dgsave ) THEN |
|---|
| 1529 | fsld2d(ji,jj) = fsld2d(ji,jj) + (fsld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1530 | ENDIF |
|---|
| 1531 | !! |
|---|
| 1532 | IF( med_diag%TOTREG_N%dgsave ) THEN |
|---|
| 1533 | fregen2d(ji,jj) = fregen2d(ji,jj) + fregen(ji,jj) |
|---|
| 1534 | ENDIF |
|---|
| 1535 | IF( med_diag%TOTRG_SI%dgsave ) THEN |
|---|
| 1536 | fregensi2d(ji,jj) = fregensi2d(ji,jj) + fregensi(ji,jj) |
|---|
| 1537 | ENDIF |
|---|
| 1538 | !! |
|---|
| 1539 | IF( med_diag%FASTN%dgsave ) THEN |
|---|
| 1540 | ftempn2d(ji,jj) = ftempn2d(ji,jj) + (ftempn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1541 | ENDIF |
|---|
| 1542 | IF( med_diag%FASTSI%dgsave ) THEN |
|---|
| 1543 | ftempsi2d(ji,jj) = ftempsi2d(ji,jj) + (ftempsi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1544 | ENDIF |
|---|
| 1545 | IF( med_diag%FASTFE%dgsave ) THEN |
|---|
| 1546 | ftempfe2d(ji,jj) =ftempfe2d(ji,jj) + (ftempfe(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1547 | ENDIF |
|---|
| 1548 | IF( med_diag%FASTC%dgsave ) THEN |
|---|
| 1549 | ftempc2d(ji,jj) = ftempc2d(ji,jj) + (ftempc(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1550 | ENDIF |
|---|
| 1551 | IF( med_diag%FASTCA%dgsave ) THEN |
|---|
| 1552 | ftempca2d(ji,jj) = ftempca2d(ji,jj) + (ftempca(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1553 | ENDIF |
|---|
| 1554 | !! |
|---|
| 1555 | IF( med_diag%REMINN%dgsave ) THEN |
|---|
| 1556 | freminn2d(ji,jj) = freminn2d(ji,jj) + (freminn(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1557 | ENDIF |
|---|
| 1558 | IF( med_diag%REMINSI%dgsave ) THEN |
|---|
| 1559 | freminsi2d(ji,jj) = freminsi2d(ji,jj) + (freminsi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1560 | ENDIF |
|---|
| 1561 | IF( med_diag%REMINFE%dgsave ) THEN |
|---|
| 1562 | freminfe2d(ji,jj)= freminfe2d(ji,jj) + (freminfe(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1563 | ENDIF |
|---|
| 1564 | IF( med_diag%REMINC%dgsave ) THEN |
|---|
| 1565 | freminc2d(ji,jj) = freminc2d(ji,jj) + (freminc(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1566 | ENDIF |
|---|
| 1567 | IF( med_diag%REMINCA%dgsave ) THEN |
|---|
| 1568 | freminca2d(ji,jj) = freminca2d(ji,jj) + (freminca(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1569 | ENDIF |
|---|
| 1570 | !! |
|---|
| 1571 | # if defined key_roam |
|---|
| 1572 | !! |
|---|
| 1573 | !! AXY (09/11/16): CMIP6 diagnostics |
|---|
| 1574 | IF( med_diag%FD_NIT3%dgsave ) THEN |
|---|
| 1575 | fd_nit3(ji,jj,jk) = ffastn(ji,jj) |
|---|
| 1576 | ENDIF |
|---|
| 1577 | IF( med_diag%FD_SIL3%dgsave ) THEN |
|---|
| 1578 | fd_sil3(ji,jj,jk) = ffastsi(ji,jj) |
|---|
| 1579 | ENDIF |
|---|
| 1580 | IF( med_diag%FD_CAR3%dgsave ) THEN |
|---|
| 1581 | fd_car3(ji,jj,jk) = ffastc(ji,jj) |
|---|
| 1582 | ENDIF |
|---|
| 1583 | IF( med_diag%FD_CAL3%dgsave ) THEN |
|---|
| 1584 | fd_cal3(ji,jj,jk) = ffastca(ji,jj) |
|---|
| 1585 | ENDIF |
|---|
| 1586 | !! |
|---|
| 1587 | IF (jk.eq.i0100) THEN |
|---|
| 1588 | IF( med_diag%RR_0100%dgsave ) THEN |
|---|
| 1589 | ffastca2d(ji,jj) = & |
|---|
| 1590 | ffastca(ji,jj)/MAX(ffastc(ji,jj), rsmall) |
|---|
| 1591 | ENDIF |
|---|
| 1592 | ELSE IF (jk.eq.i0500) THEN |
|---|
| 1593 | IF( med_diag%RR_0500%dgsave ) THEN |
|---|
| 1594 | ffastca2d(ji,jj) = & |
|---|
| 1595 | ffastca(ji,jj)/MAX(ffastc(ji,jj), rsmall) |
|---|
| 1596 | ENDIF |
|---|
| 1597 | ELSE IF (jk.eq.i1000) THEN |
|---|
| 1598 | IF( med_diag%RR_1000%dgsave ) THEN |
|---|
| 1599 | ffastca2d(ji,jj) = & |
|---|
| 1600 | ffastca(ji,jj)/MAX(ffastc(ji,jj), rsmall) |
|---|
| 1601 | ENDIF |
|---|
| 1602 | ELSE IF (jk.eq.mbathy(ji,jj)) THEN |
|---|
| 1603 | IF( med_diag%IBEN_N%dgsave ) THEN |
|---|
| 1604 | iben_n2d(ji,jj) = f_sbenin_n(ji,jj) + f_fbenin_n(ji,jj) |
|---|
| 1605 | ENDIF |
|---|
| 1606 | IF( med_diag%IBEN_FE%dgsave ) THEN |
|---|
| 1607 | iben_fe2d(ji,jj) = f_sbenin_fe(ji,jj) + f_fbenin_fe(ji,jj) |
|---|
| 1608 | ENDIF |
|---|
| 1609 | IF( med_diag%IBEN_C%dgsave ) THEN |
|---|
| 1610 | iben_c2d(ji,jj) = f_sbenin_c(ji,jj) + f_fbenin_c(ji,jj) |
|---|
| 1611 | ENDIF |
|---|
| 1612 | IF( med_diag%IBEN_SI%dgsave ) THEN |
|---|
| 1613 | iben_si2d(ji,jj) = f_fbenin_si(ji,jj) |
|---|
| 1614 | ENDIF |
|---|
| 1615 | IF( med_diag%IBEN_CA%dgsave ) THEN |
|---|
| 1616 | iben_ca2d(ji,jj) = f_fbenin_ca(ji,jj) |
|---|
| 1617 | ENDIF |
|---|
| 1618 | IF( med_diag%OBEN_N%dgsave ) THEN |
|---|
| 1619 | oben_n2d(ji,jj) = f_benout_n(ji,jj) |
|---|
| 1620 | ENDIF |
|---|
| 1621 | IF( med_diag%OBEN_FE%dgsave ) THEN |
|---|
| 1622 | oben_fe2d(ji,jj) = f_benout_fe(ji,jj) |
|---|
| 1623 | ENDIF |
|---|
| 1624 | IF( med_diag%OBEN_C%dgsave ) THEN |
|---|
| 1625 | oben_c2d(ji,jj) = f_benout_c(ji,jj) |
|---|
| 1626 | ENDIF |
|---|
| 1627 | IF( med_diag%OBEN_SI%dgsave ) THEN |
|---|
| 1628 | oben_si2d(ji,jj) = f_benout_si(ji,jj) |
|---|
| 1629 | ENDIF |
|---|
| 1630 | IF( med_diag%OBEN_CA%dgsave ) THEN |
|---|
| 1631 | oben_ca2d(ji,jj) = f_benout_ca(ji,jj) |
|---|
| 1632 | ENDIF |
|---|
| 1633 | IF( med_diag%SFR_OCAL%dgsave ) THEN |
|---|
| 1634 | sfr_ocal2d(ji,jj) = f3_omcal(ji,jj,jk) |
|---|
| 1635 | ENDIF |
|---|
| 1636 | IF( med_diag%SFR_OARG%dgsave ) THEN |
|---|
| 1637 | sfr_oarg2d(ji,jj) = f3_omarg(ji,jj,jk) |
|---|
| 1638 | ENDIF |
|---|
| 1639 | IF( med_diag%LYSO_CA%dgsave ) THEN |
|---|
| 1640 | lyso_ca2d(ji,jj) = f_benout_lyso_ca(ji,jj) |
|---|
| 1641 | ENDIF |
|---|
| 1642 | ENDIF |
|---|
| 1643 | !! end bathy-1 diags |
|---|
| 1644 | !! |
|---|
| 1645 | IF( med_diag%RIV_N%dgsave ) THEN |
|---|
| 1646 | rivn2d(ji,jj) = rivn2d(ji,jj) + (f_riv_loc_n(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1647 | ENDIF |
|---|
| 1648 | IF( med_diag%RIV_SI%dgsave ) THEN |
|---|
| 1649 | rivsi2d(ji,jj) = rivsi2d(ji,jj) + (f_riv_loc_si(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1650 | ENDIF |
|---|
| 1651 | IF( med_diag%RIV_C%dgsave ) THEN |
|---|
| 1652 | rivc2d(ji,jj) = rivc2d(ji,jj) + (f_riv_loc_c(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1653 | ENDIF |
|---|
| 1654 | IF( med_diag%RIV_ALK%dgsave ) THEN |
|---|
| 1655 | rivalk2d(ji,jj) = rivalk2d(ji,jj) + (f_riv_loc_alk(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1656 | ENDIF |
|---|
| 1657 | IF( med_diag%DETC%dgsave ) THEN |
|---|
| 1658 | fslowc2d(ji,jj) = fslowc2d(ji,jj) + (fslowc(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1659 | ENDIF |
|---|
| 1660 | !! |
|---|
| 1661 | !! |
|---|
| 1662 | !! |
|---|
| 1663 | IF( med_diag%PN_LLOSS%dgsave ) THEN |
|---|
| 1664 | fdpn22d(ji,jj) = fdpn22d(ji,jj) + (fdpn2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1665 | ENDIF |
|---|
| 1666 | IF( med_diag%PD_LLOSS%dgsave ) THEN |
|---|
| 1667 | fdpd22d(ji,jj) = fdpd22d(ji,jj) + (fdpd2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1668 | ENDIF |
|---|
| 1669 | IF( med_diag%ZI_LLOSS%dgsave ) THEN |
|---|
| 1670 | fdzmi22d(ji,jj) = fdzmi22d(ji,jj) + (fdzmi2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1671 | ENDIF |
|---|
| 1672 | IF( med_diag%ZE_LLOSS%dgsave ) THEN |
|---|
| 1673 | fdzme22d(ji,jj) = fdzme22d(ji,jj) + (fdzme2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1674 | ENDIF |
|---|
| 1675 | IF( med_diag%ZI_MES_N%dgsave ) THEN |
|---|
| 1676 | zimesn2d(ji,jj) = zimesn2d(ji,jj) + & |
|---|
| 1677 | (xphi * (fgmipn(ji,jj) + fgmid(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 1678 | ENDIF |
|---|
| 1679 | IF( med_diag%ZI_MES_D%dgsave ) THEN |
|---|
| 1680 | zimesd2d(ji,jj) = zimesd2d(ji,jj) + & |
|---|
| 1681 | ((1. - xbetan) * finmi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1682 | ENDIF |
|---|
| 1683 | IF( med_diag%ZI_MES_C%dgsave ) THEN |
|---|
| 1684 | zimesc2d(ji,jj) = zimesc2d(ji,jj) + & |
|---|
| 1685 | (xphi * ((xthetapn * fgmipn(ji,jj)) + fgmidc(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 1686 | ENDIF |
|---|
| 1687 | IF( med_diag%ZI_MESDC%dgsave ) THEN |
|---|
| 1688 | zimesdc2d(ji,jj) = zimesdc2d(ji,jj) + & |
|---|
| 1689 | ((1. - xbetac) * ficmi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1690 | ENDIF |
|---|
| 1691 | IF( med_diag%ZI_EXCR%dgsave ) THEN |
|---|
| 1692 | ziexcr2d(ji,jj) = ziexcr2d(ji,jj) + (fmiexcr(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1693 | ENDIF |
|---|
| 1694 | IF( med_diag%ZI_RESP%dgsave ) THEN |
|---|
| 1695 | ziresp2d(ji,jj) = ziresp2d(ji,jj) + (fmiresp(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1696 | ENDIF |
|---|
| 1697 | IF( med_diag%ZI_GROW%dgsave ) THEN |
|---|
| 1698 | zigrow2d(ji,jj) = zigrow2d(ji,jj) + (fmigrow(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1699 | ENDIF |
|---|
| 1700 | IF( med_diag%ZE_MES_N%dgsave ) THEN |
|---|
| 1701 | zemesn2d(ji,jj) = zemesn2d(ji,jj) + & |
|---|
| 1702 | (xphi * (fgmepn(ji,jj) + fgmepd(ji,jj) + fgmezmi(ji,jj) + fgmed(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 1703 | ENDIF |
|---|
| 1704 | IF( med_diag%ZE_MES_D%dgsave ) THEN |
|---|
| 1705 | zemesd2d(ji,jj) = zemesd2d(ji,jj) + & |
|---|
| 1706 | ((1. - xbetan) * finme(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1707 | ENDIF |
|---|
| 1708 | IF( med_diag%ZE_MES_C%dgsave ) THEN |
|---|
| 1709 | zemesc2d(ji,jj) = zemesc2d(ji,jj) + & |
|---|
| 1710 | (xphi * ((xthetapn * fgmepn(ji,jj)) + (xthetapd * fgmepd(ji,jj)) + & |
|---|
| 1711 | (xthetazmi * fgmezmi(ji,jj)) + fgmedc(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 1712 | ENDIF |
|---|
| 1713 | IF( med_diag%ZE_MESDC%dgsave ) THEN |
|---|
| 1714 | zemesdc2d(ji,jj) = zemesdc2d(ji,jj) + & |
|---|
| 1715 | ((1. - xbetac) * ficme(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1716 | ENDIF |
|---|
| 1717 | IF( med_diag%ZE_EXCR%dgsave ) THEN |
|---|
| 1718 | zeexcr2d(ji,jj) = zeexcr2d(ji,jj) + (fmeexcr(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1719 | ENDIF |
|---|
| 1720 | IF( med_diag%ZE_RESP%dgsave ) THEN |
|---|
| 1721 | zeresp2d(ji,jj) = zeresp2d(ji,jj) + (fmeresp(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1722 | ENDIF |
|---|
| 1723 | IF( med_diag%ZE_GROW%dgsave ) THEN |
|---|
| 1724 | zegrow2d(ji,jj) = zegrow2d(ji,jj) + (fmegrow(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1725 | ENDIF |
|---|
| 1726 | IF( med_diag%MDETC%dgsave ) THEN |
|---|
| 1727 | mdetc2d(ji,jj) = mdetc2d(ji,jj) + (fddc(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1728 | ENDIF |
|---|
| 1729 | IF( med_diag%GMIDC%dgsave ) THEN |
|---|
| 1730 | gmidc2d(ji,jj) = gmidc2d(ji,jj) + (fgmidc(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1731 | ENDIF |
|---|
| 1732 | IF( med_diag%GMEDC%dgsave ) THEN |
|---|
| 1733 | gmedc2d(ji,jj) = gmedc2d(ji,jj) + (fgmedc(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1734 | ENDIF |
|---|
| 1735 | !! |
|---|
| 1736 | # endif |
|---|
| 1737 | !! |
|---|
| 1738 | !! ** 3D diagnostics |
|---|
| 1739 | IF( med_diag%TPP3%dgsave ) THEN |
|---|
| 1740 | tpp3d(ji,jj,jk) = (fprn(ji,jj) * zphn(ji,jj)) + (fprd(ji,jj) * zphd(ji,jj)) |
|---|
| 1741 | !CALL iom_put( "TPP3" , tpp3d ) |
|---|
| 1742 | ENDIF |
|---|
| 1743 | IF( med_diag%TPPD3%dgsave ) THEN |
|---|
| 1744 | tppd3(ji,jj,jk) = (fprd(ji,jj) * zphd(ji,jj)) |
|---|
| 1745 | ENDIF |
|---|
| 1746 | |
|---|
| 1747 | IF( med_diag%REMIN3N%dgsave ) THEN |
|---|
| 1748 | remin3dn(ji,jj,jk) = fregen(ji,jj) + (freminn(ji,jj) * fse3t(ji,jj,jk)) !! remineralisation |
|---|
| 1749 | !CALL iom_put( "REMIN3N" , remin3dn ) |
|---|
| 1750 | ENDIF |
|---|
| 1751 | !! IF( med_diag%PH3%dgsave ) THEN |
|---|
| 1752 | !! CALL iom_put( "PH3" , f3_pH ) |
|---|
| 1753 | !! ENDIF |
|---|
| 1754 | !! IF( med_diag%OM_CAL3%dgsave ) THEN |
|---|
| 1755 | !! CALL iom_put( "OM_CAL3" , f3_omcal ) |
|---|
| 1756 | !! ENDIF |
|---|
| 1757 | !! |
|---|
| 1758 | !! AXY (09/11/16): CMIP6 diagnostics |
|---|
| 1759 | IF ( med_diag%DCALC3%dgsave ) THEN |
|---|
| 1760 | dcalc3(ji,jj,jk) = freminca(ji,jj) |
|---|
| 1761 | ENDIF |
|---|
| 1762 | IF ( med_diag%FEDISS3%dgsave ) THEN |
|---|
| 1763 | fediss3(ji,jj,jk) = ffetop(ji,jj) |
|---|
| 1764 | ENDIF |
|---|
| 1765 | IF ( med_diag%FESCAV3%dgsave ) THEN |
|---|
| 1766 | fescav3(ji,jj,jk) = ffescav(ji,jj) |
|---|
| 1767 | ENDIF |
|---|
| 1768 | IF ( med_diag%MIGRAZP3%dgsave ) THEN |
|---|
| 1769 | migrazp3(ji,jj,jk) = fgmipn(ji,jj) * xthetapn |
|---|
| 1770 | ENDIF |
|---|
| 1771 | IF ( med_diag%MIGRAZD3%dgsave ) THEN |
|---|
| 1772 | migrazd3(ji,jj,jk) = fgmidc(ji,jj) |
|---|
| 1773 | ENDIF |
|---|
| 1774 | IF ( med_diag%MEGRAZP3%dgsave ) THEN |
|---|
| 1775 | megrazp3(ji,jj,jk) = (fgmepn(ji,jj) * xthetapn) + (fgmepd(ji,jj) * xthetapd) |
|---|
| 1776 | ENDIF |
|---|
| 1777 | IF ( med_diag%MEGRAZD3%dgsave ) THEN |
|---|
| 1778 | megrazd3(ji,jj,jk) = fgmedc(ji,jj) |
|---|
| 1779 | ENDIF |
|---|
| 1780 | IF ( med_diag%MEGRAZZ3%dgsave ) THEN |
|---|
| 1781 | megrazz3(ji,jj,jk) = (fgmezmi(ji,jj) * xthetazmi) |
|---|
| 1782 | ENDIF |
|---|
| 1783 | IF ( med_diag%PBSI3%dgsave ) THEN |
|---|
| 1784 | pbsi3(ji,jj,jk) = (fprds(ji,jj) * zpds(ji,jj)) |
|---|
| 1785 | ENDIF |
|---|
| 1786 | IF ( med_diag%PCAL3%dgsave ) THEN |
|---|
| 1787 | pcal3(ji,jj,jk) = ftempca(ji,jj) |
|---|
| 1788 | ENDIF |
|---|
| 1789 | IF ( med_diag%REMOC3%dgsave ) THEN |
|---|
| 1790 | remoc3(ji,jj,jk) = freminc(ji,jj) |
|---|
| 1791 | ENDIF |
|---|
| 1792 | IF ( med_diag%PNLIMJ3%dgsave ) THEN |
|---|
| 1793 | ! pnlimj3(ji,jj,jk) = fjln(ji,jj) |
|---|
| 1794 | pnlimj3(ji,jj,jk) = fjlim_pn(ji,jj) |
|---|
| 1795 | ENDIF |
|---|
| 1796 | IF ( med_diag%PNLIMN3%dgsave ) THEN |
|---|
| 1797 | pnlimn3(ji,jj,jk) = fnln(ji,jj) |
|---|
| 1798 | ENDIF |
|---|
| 1799 | IF ( med_diag%PNLIMFE3%dgsave ) THEN |
|---|
| 1800 | pnlimfe3(ji,jj,jk) = ffln2(ji,jj) |
|---|
| 1801 | ENDIF |
|---|
| 1802 | IF ( med_diag%PDLIMJ3%dgsave ) THEN |
|---|
| 1803 | ! pdlimj3(ji,jj,jk) = fjld(ji,jj) |
|---|
| 1804 | pdlimj3(ji,jj,jk) = fjlim_pd(ji,jj) |
|---|
| 1805 | ENDIF |
|---|
| 1806 | IF ( med_diag%PDLIMN3%dgsave ) THEN |
|---|
| 1807 | pdlimn3(ji,jj,jk) = fnld(ji,jj) |
|---|
| 1808 | ENDIF |
|---|
| 1809 | IF ( med_diag%PDLIMFE3%dgsave ) THEN |
|---|
| 1810 | pdlimfe3(ji,jj,jk) = ffld(ji,jj) |
|---|
| 1811 | ENDIF |
|---|
| 1812 | IF ( med_diag%PDLIMSI3%dgsave ) THEN |
|---|
| 1813 | pdlimsi3(ji,jj,jk) = fsld2(ji,jj) |
|---|
| 1814 | ENDIF |
|---|
| 1815 | !! |
|---|
| 1816 | !! ** Without using iom_use |
|---|
| 1817 | ELSE IF( ln_diatrc ) THEN |
|---|
| 1818 | # if defined key_debug_medusa |
|---|
| 1819 | IF (lwp) write (numout,*) 'trc_bio_medusa: diag in ij-jj-jk ln_diatrc' |
|---|
| 1820 | CALL flush(numout) |
|---|
| 1821 | # endif |
|---|
| 1822 | !!---------------------------------------------------------------------- |
|---|
| 1823 | !! Prepare 2D diagnostics |
|---|
| 1824 | !!---------------------------------------------------------------------- |
|---|
| 1825 | !! |
|---|
| 1826 | !! if ((kt / 240*240).eq.kt) then |
|---|
| 1827 | !! IF (lwp) write (*,*) '*******!MEDUSA DIAADD!*******',kt |
|---|
| 1828 | !! endif |
|---|
| 1829 | trc2d(ji,jj,1) = ftot_n(ji,jj) !! nitrogen inventory |
|---|
| 1830 | trc2d(ji,jj,2) = ftot_si(ji,jj) !! silicon inventory |
|---|
| 1831 | trc2d(ji,jj,3) = ftot_fe(ji,jj) !! iron inventory |
|---|
| 1832 | trc2d(ji,jj,4) = trc2d(ji,jj,4) + (fprn(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) !! non-diatom production |
|---|
| 1833 | trc2d(ji,jj,5) = trc2d(ji,jj,5) + (fdpn(ji,jj) * fse3t(ji,jj,jk)) !! non-diatom non-grazing losses |
|---|
| 1834 | trc2d(ji,jj,6) = trc2d(ji,jj,6) + (fprd(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) !! diatom production |
|---|
| 1835 | trc2d(ji,jj,7) = trc2d(ji,jj,7) + (fdpd(ji,jj) * fse3t(ji,jj,jk)) !! diatom non-grazing losses |
|---|
| 1836 | !! diagnostic field 8 is (ostensibly) supplied by trcsed.F |
|---|
| 1837 | trc2d(ji,jj,9) = trc2d(ji,jj,9) + (fprds(ji,jj) * zpds(ji,jj) * fse3t(ji,jj,jk)) !! diatom silicon production |
|---|
| 1838 | trc2d(ji,jj,10) = trc2d(ji,jj,10) + (fsdiss(ji,jj) * fse3t(ji,jj,jk)) !! diatom silicon dissolution |
|---|
| 1839 | trc2d(ji,jj,11) = trc2d(ji,jj,11) + (fgmipn(ji,jj) * fse3t(ji,jj,jk)) !! microzoo grazing on non-diatoms |
|---|
| 1840 | trc2d(ji,jj,12) = trc2d(ji,jj,12) + (fgmid(ji,jj) * fse3t(ji,jj,jk)) !! microzoo grazing on detrital nitrogen |
|---|
| 1841 | trc2d(ji,jj,13) = trc2d(ji,jj,13) + (fdzmi(ji,jj) * fse3t(ji,jj,jk)) !! microzoo non-grazing losses |
|---|
| 1842 | trc2d(ji,jj,14) = trc2d(ji,jj,14) + (fgmepn(ji,jj) * fse3t(ji,jj,jk)) !! mesozoo grazing on non-diatoms |
|---|
| 1843 | trc2d(ji,jj,15) = trc2d(ji,jj,15) + (fgmepd(ji,jj) * fse3t(ji,jj,jk)) !! mesozoo grazing on diatoms |
|---|
| 1844 | trc2d(ji,jj,16) = trc2d(ji,jj,16) + (fgmezmi(ji,jj) * fse3t(ji,jj,jk)) !! mesozoo grazing on microzoo |
|---|
| 1845 | trc2d(ji,jj,17) = trc2d(ji,jj,17) + (fgmed(ji,jj) * fse3t(ji,jj,jk)) !! mesozoo grazing on detrital nitrogen |
|---|
| 1846 | trc2d(ji,jj,18) = trc2d(ji,jj,18) + (fdzme(ji,jj) * fse3t(ji,jj,jk)) !! mesozoo non-grazing losses |
|---|
| 1847 | !! diagnostic field 19 is (ostensibly) supplied by trcexp.F |
|---|
| 1848 | trc2d(ji,jj,20) = trc2d(ji,jj,20) + (fslown(ji,jj) * fse3t(ji,jj,jk)) !! slow sinking detritus N production |
|---|
| 1849 | trc2d(ji,jj,21) = trc2d(ji,jj,21) + (fdd(ji,jj) * fse3t(ji,jj,jk)) !! detrital remineralisation |
|---|
| 1850 | trc2d(ji,jj,22) = trc2d(ji,jj,22) + (ffetop(ji,jj) * fse3t(ji,jj,jk)) !! aeolian iron addition |
|---|
| 1851 | trc2d(ji,jj,23) = trc2d(ji,jj,23) + (ffebot(ji,jj) * fse3t(ji,jj,jk)) !! seafloor iron addition |
|---|
| 1852 | trc2d(ji,jj,24) = trc2d(ji,jj,24) + (ffescav(ji,jj) * fse3t(ji,jj,jk)) !! "free" iron scavenging |
|---|
| 1853 | trc2d(ji,jj,25) = trc2d(ji,jj,25) + (fjlim_pn(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) !! non-diatom J limitation term |
|---|
| 1854 | trc2d(ji,jj,26) = trc2d(ji,jj,26) + (fnln(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) !! non-diatom N limitation term |
|---|
| 1855 | trc2d(ji,jj,27) = trc2d(ji,jj,27) + (ffln2(ji,jj) * zphn(ji,jj) * fse3t(ji,jj,jk)) !! non-diatom Fe limitation term |
|---|
| 1856 | trc2d(ji,jj,28) = trc2d(ji,jj,28) + (fjlim_pd(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) !! diatom J limitation term |
|---|
| 1857 | trc2d(ji,jj,29) = trc2d(ji,jj,29) + (fnld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) !! diatom N limitation term |
|---|
| 1858 | trc2d(ji,jj,30) = trc2d(ji,jj,30) + (ffld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) !! diatom Fe limitation term |
|---|
| 1859 | trc2d(ji,jj,31) = trc2d(ji,jj,31) + (fsld2(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) !! diatom Si limitation term |
|---|
| 1860 | trc2d(ji,jj,32) = trc2d(ji,jj,32) + (fsld(ji,jj) * zphd(ji,jj) * fse3t(ji,jj,jk)) !! diatom Si uptake limitation term |
|---|
| 1861 | if (jk.eq.i0100) trc2d(ji,jj,33) = fslownflux(ji,jj) !! slow detritus flux at 100 m |
|---|
| 1862 | if (jk.eq.i0200) trc2d(ji,jj,34) = fslownflux(ji,jj) !! slow detritus flux at 200 m |
|---|
| 1863 | if (jk.eq.i0500) trc2d(ji,jj,35) = fslownflux(ji,jj) !! slow detritus flux at 500 m |
|---|
| 1864 | if (jk.eq.i1000) trc2d(ji,jj,36) = fslownflux(ji,jj) !! slow detritus flux at 1000 m |
|---|
| 1865 | trc2d(ji,jj,37) = trc2d(ji,jj,37) + fregen(ji,jj) !! non-fast N full column regeneration |
|---|
| 1866 | trc2d(ji,jj,38) = trc2d(ji,jj,38) + fregensi(ji,jj) !! non-fast Si full column regeneration |
|---|
| 1867 | if (jk.eq.i0100) trc2d(ji,jj,39) = trc2d(ji,jj,37) !! non-fast N regeneration to 100 m |
|---|
| 1868 | if (jk.eq.i0200) trc2d(ji,jj,40) = trc2d(ji,jj,37) !! non-fast N regeneration to 200 m |
|---|
| 1869 | if (jk.eq.i0500) trc2d(ji,jj,41) = trc2d(ji,jj,37) !! non-fast N regeneration to 500 m |
|---|
| 1870 | if (jk.eq.i1000) trc2d(ji,jj,42) = trc2d(ji,jj,37) !! non-fast N regeneration to 1000 m |
|---|
| 1871 | trc2d(ji,jj,43) = trc2d(ji,jj,43) + (ftempn(ji,jj) * fse3t(ji,jj,jk)) !! fast sinking detritus N production |
|---|
| 1872 | trc2d(ji,jj,44) = trc2d(ji,jj,44) + (ftempsi(ji,jj) * fse3t(ji,jj,jk)) !! fast sinking detritus Si production |
|---|
| 1873 | trc2d(ji,jj,45) = trc2d(ji,jj,45) + (ftempfe(ji,jj) * fse3t(ji,jj,jk)) !! fast sinking detritus Fe production |
|---|
| 1874 | trc2d(ji,jj,46) = trc2d(ji,jj,46) + (ftempc(ji,jj) * fse3t(ji,jj,jk)) !! fast sinking detritus C production |
|---|
| 1875 | trc2d(ji,jj,47) = trc2d(ji,jj,47) + (ftempca(ji,jj) * fse3t(ji,jj,jk)) !! fast sinking detritus CaCO3 production |
|---|
| 1876 | if (jk.eq.i0100) trc2d(ji,jj,48) = ffastn(ji,jj) !! fast detritus N flux at 100 m |
|---|
| 1877 | if (jk.eq.i0200) trc2d(ji,jj,49) = ffastn(ji,jj) !! fast detritus N flux at 200 m |
|---|
| 1878 | if (jk.eq.i0500) trc2d(ji,jj,50) = ffastn(ji,jj) !! fast detritus N flux at 500 m |
|---|
| 1879 | if (jk.eq.i1000) trc2d(ji,jj,51) = ffastn(ji,jj) !! fast detritus N flux at 1000 m |
|---|
| 1880 | if (jk.eq.i0100) trc2d(ji,jj,52) = fregenfast(ji,jj) !! N regeneration to 100 m |
|---|
| 1881 | if (jk.eq.i0200) trc2d(ji,jj,53) = fregenfast(ji,jj) !! N regeneration to 200 m |
|---|
| 1882 | if (jk.eq.i0500) trc2d(ji,jj,54) = fregenfast(ji,jj) !! N regeneration to 500 m |
|---|
| 1883 | if (jk.eq.i1000) trc2d(ji,jj,55) = fregenfast(ji,jj) !! N regeneration to 1000 m |
|---|
| 1884 | if (jk.eq.i0100) trc2d(ji,jj,56) = ffastsi(ji,jj) !! fast detritus Si flux at 100 m |
|---|
| 1885 | if (jk.eq.i0200) trc2d(ji,jj,57) = ffastsi(ji,jj) !! fast detritus Si flux at 200 m |
|---|
| 1886 | if (jk.eq.i0500) trc2d(ji,jj,58) = ffastsi(ji,jj) !! fast detritus Si flux at 500 m |
|---|
| 1887 | if (jk.eq.i1000) trc2d(ji,jj,59) = ffastsi(ji,jj) !! fast detritus Si flux at 1000 m |
|---|
| 1888 | if (jk.eq.i0100) trc2d(ji,jj,60) = fregenfastsi(ji,jj) !! Si regeneration to 100 m |
|---|
| 1889 | if (jk.eq.i0200) trc2d(ji,jj,61) = fregenfastsi(ji,jj) !! Si regeneration to 200 m |
|---|
| 1890 | if (jk.eq.i0500) trc2d(ji,jj,62) = fregenfastsi(ji,jj) !! Si regeneration to 500 m |
|---|
| 1891 | if (jk.eq.i1000) trc2d(ji,jj,63) = fregenfastsi(ji,jj) !! Si regeneration to 1000 m |
|---|
| 1892 | trc2d(ji,jj,64) = trc2d(ji,jj,64) + (freminn(ji,jj) * fse3t(ji,jj,jk)) !! sum of fast-sinking N fluxes |
|---|
| 1893 | trc2d(ji,jj,65) = trc2d(ji,jj,65) + (freminsi(ji,jj) * fse3t(ji,jj,jk)) !! sum of fast-sinking Si fluxes |
|---|
| 1894 | trc2d(ji,jj,66) = trc2d(ji,jj,66) + (freminfe(ji,jj) * fse3t(ji,jj,jk)) !! sum of fast-sinking Fe fluxes |
|---|
| 1895 | trc2d(ji,jj,67) = trc2d(ji,jj,67) + (freminc(ji,jj) * fse3t(ji,jj,jk)) !! sum of fast-sinking C fluxes |
|---|
| 1896 | trc2d(ji,jj,68) = trc2d(ji,jj,68) + (freminca(ji,jj) * fse3t(ji,jj,jk)) !! sum of fast-sinking Ca fluxes |
|---|
| 1897 | if (jk.eq.mbathy(ji,jj)) then |
|---|
| 1898 | trc2d(ji,jj,69) = fsedn(ji,jj) !! N sedimentation flux |
|---|
| 1899 | trc2d(ji,jj,70) = fsedsi(ji,jj) !! Si sedimentation flux |
|---|
| 1900 | trc2d(ji,jj,71) = fsedfe(ji,jj) !! Fe sedimentation flux |
|---|
| 1901 | trc2d(ji,jj,72) = fsedc(ji,jj) !! C sedimentation flux |
|---|
| 1902 | trc2d(ji,jj,73) = fsedca(ji,jj) !! Ca sedimentation flux |
|---|
| 1903 | endif |
|---|
| 1904 | if (jk.eq.1) trc2d(ji,jj,74) = qsr(ji,jj) |
|---|
| 1905 | if (jk.eq.1) trc2d(ji,jj,75) = xpar(ji,jj,jk) |
|---|
| 1906 | !! if (jk.eq.1) trc2d(ji,jj,75) = real(iters(ji,jj)) |
|---|
| 1907 | !! diagnostic fields 76 to 80 calculated below |
|---|
| 1908 | trc2d(ji,jj,81) = trc2d(ji,jj,81) + fprn_ml(ji,jj) !! mixed layer non-diatom production |
|---|
| 1909 | trc2d(ji,jj,82) = trc2d(ji,jj,82) + fprd_ml(ji,jj) !! mixed layer diatom production |
|---|
| 1910 | # if defined key_gulf_finland |
|---|
| 1911 | if (jk.eq.1) trc2d(ji,jj,83) = real(ibio_switch) !! Gulf of Finland check |
|---|
| 1912 | # else |
|---|
| 1913 | trc2d(ji,jj,83) = ocal_ccd(ji,jj) !! calcite CCD depth |
|---|
| 1914 | # endif |
|---|
| 1915 | trc2d(ji,jj,84) = fccd(ji,jj) !! last model level above calcite CCD depth |
|---|
| 1916 | if (jk.eq.1) trc2d(ji,jj,85) = xFree(ji,jj) !! surface "free" iron |
|---|
| 1917 | if (jk.eq.i0200) trc2d(ji,jj,86) = xFree(ji,jj) !! "free" iron at 100 m |
|---|
| 1918 | if (jk.eq.i0200) trc2d(ji,jj,87) = xFree(ji,jj) !! "free" iron at 200 m |
|---|
| 1919 | if (jk.eq.i0500) trc2d(ji,jj,88) = xFree(ji,jj) !! "free" iron at 500 m |
|---|
| 1920 | if (jk.eq.i1000) trc2d(ji,jj,89) = xFree(ji,jj) !! "free" iron at 1000 m |
|---|
| 1921 | !! AXY (27/06/12): extract "euphotic depth" |
|---|
| 1922 | if (jk.eq.1) trc2d(ji,jj,90) = xze(ji,jj) |
|---|
| 1923 | !! |
|---|
| 1924 | # if defined key_roam |
|---|
| 1925 | !! ROAM provisionally has access to a further 20 2D diagnostics |
|---|
| 1926 | if (jk .eq. 1) then |
|---|
| 1927 | trc2d(ji,jj,91) = trc2d(ji,jj,91) + wndm(ji,jj) !! surface wind |
|---|
| 1928 | trc2d(ji,jj,92) = trc2d(ji,jj,92) + f_pco2atm(ji,jj) !! atmospheric pCO2 |
|---|
| 1929 | trc2d(ji,jj,93) = trc2d(ji,jj,93) + f_ph(ji,jj) !! ocean pH |
|---|
| 1930 | trc2d(ji,jj,94) = trc2d(ji,jj,94) + f_pco2w(ji,jj) !! ocean pCO2 |
|---|
| 1931 | trc2d(ji,jj,95) = trc2d(ji,jj,95) + f_h2co3(ji,jj) !! ocean H2CO3 conc. |
|---|
| 1932 | trc2d(ji,jj,96) = trc2d(ji,jj,96) + f_hco3(ji,jj) !! ocean HCO3 conc. |
|---|
| 1933 | trc2d(ji,jj,97) = trc2d(ji,jj,97) + f_co3(ji,jj) !! ocean CO3 conc. |
|---|
| 1934 | trc2d(ji,jj,98) = trc2d(ji,jj,98) + f_co2flux(ji,jj) !! air-sea CO2 flux |
|---|
| 1935 | trc2d(ji,jj,99) = trc2d(ji,jj,99) + f_omcal(ji,jj) !! ocean omega calcite |
|---|
| 1936 | trc2d(ji,jj,100) = trc2d(ji,jj,100) + f_omarg(ji,jj) !! ocean omega aragonite |
|---|
| 1937 | trc2d(ji,jj,101) = trc2d(ji,jj,101) + f_TDIC(ji,jj) !! ocean TDIC |
|---|
| 1938 | trc2d(ji,jj,102) = trc2d(ji,jj,102) + f_TALK(ji,jj) !! ocean TALK |
|---|
| 1939 | trc2d(ji,jj,103) = trc2d(ji,jj,103) + f_kw660(ji,jj) !! surface kw660 |
|---|
| 1940 | trc2d(ji,jj,104) = trc2d(ji,jj,104) + f_pp0(ji,jj) !! surface pressure |
|---|
| 1941 | trc2d(ji,jj,105) = trc2d(ji,jj,105) + f_o2flux(ji,jj) !! air-sea O2 flux |
|---|
| 1942 | trc2d(ji,jj,106) = trc2d(ji,jj,106) + f_o2sat(ji,jj) !! ocean O2 saturation |
|---|
| 1943 | trc2d(ji,jj,107) = f2_ccd_cal(ji,jj) !! depth calcite CCD |
|---|
| 1944 | trc2d(ji,jj,108) = f2_ccd_arg(ji,jj) !! depth aragonite CCD |
|---|
| 1945 | endif |
|---|
| 1946 | if (jk .eq. mbathy(ji,jj)) then |
|---|
| 1947 | trc2d(ji,jj,109) = f3_omcal(ji,jj,jk) !! seafloor omega calcite |
|---|
| 1948 | trc2d(ji,jj,110) = f3_omarg(ji,jj,jk) !! seafloor omega aragonite |
|---|
| 1949 | endif |
|---|
| 1950 | !! diagnostic fields 111 to 117 calculated below |
|---|
| 1951 | if (jk.eq.i0100) trc2d(ji,jj,118) = ffastca(ji,jj)/MAX(ffastc(ji,jj), rsmall) !! rain ratio at 100 m |
|---|
| 1952 | if (jk.eq.i0500) trc2d(ji,jj,119) = ffastca(ji,jj)/MAX(ffastc(ji,jj), rsmall) !! rain ratio at 500 m |
|---|
| 1953 | if (jk.eq.i1000) trc2d(ji,jj,120) = ffastca(ji,jj)/MAX(ffastc(ji,jj), rsmall) !! rain ratio at 1000 m |
|---|
| 1954 | !! AXY (18/01/12): benthic flux diagnostics |
|---|
| 1955 | if (jk.eq.mbathy(ji,jj)) then |
|---|
| 1956 | trc2d(ji,jj,121) = f_sbenin_n(ji,jj) + f_fbenin_n(ji,jj) |
|---|
| 1957 | trc2d(ji,jj,122) = f_sbenin_fe(ji,jj) + f_fbenin_fe(ji,jj) |
|---|
| 1958 | trc2d(ji,jj,123) = f_sbenin_c(ji,jj) + f_fbenin_c(ji,jj) |
|---|
| 1959 | trc2d(ji,jj,124) = f_fbenin_si(ji,jj) |
|---|
| 1960 | trc2d(ji,jj,125) = f_fbenin_ca(ji,jj) |
|---|
| 1961 | trc2d(ji,jj,126) = f_benout_n(ji,jj) |
|---|
| 1962 | trc2d(ji,jj,127) = f_benout_fe(ji,jj) |
|---|
| 1963 | trc2d(ji,jj,128) = f_benout_c(ji,jj) |
|---|
| 1964 | trc2d(ji,jj,129) = f_benout_si(ji,jj) |
|---|
| 1965 | trc2d(ji,jj,130) = f_benout_ca(ji,jj) |
|---|
| 1966 | endif |
|---|
| 1967 | !! diagnostics fields 131 to 135 calculated below |
|---|
| 1968 | trc2d(ji,jj,136) = f_runoff(ji,jj) |
|---|
| 1969 | !! AXY (19/07/12): amended to allow for riverine nutrient addition below surface |
|---|
| 1970 | trc2d(ji,jj,137) = trc2d(ji,jj,137) + (f_riv_loc_n(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1971 | trc2d(ji,jj,138) = trc2d(ji,jj,138) + (f_riv_loc_si(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1972 | trc2d(ji,jj,139) = trc2d(ji,jj,139) + (f_riv_loc_c(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1973 | trc2d(ji,jj,140) = trc2d(ji,jj,140) + (f_riv_loc_alk(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1974 | trc2d(ji,jj,141) = trc2d(ji,jj,141) + (fslowc(ji,jj) * fse3t(ji,jj,jk)) !! slow sinking detritus C production |
|---|
| 1975 | if (jk.eq.i0100) trc2d(ji,jj,142) = fslowcflux(ji,jj) !! slow detritus flux at 100 m |
|---|
| 1976 | if (jk.eq.i0200) trc2d(ji,jj,143) = fslowcflux(ji,jj) !! slow detritus flux at 200 m |
|---|
| 1977 | if (jk.eq.i0500) trc2d(ji,jj,144) = fslowcflux(ji,jj) !! slow detritus flux at 500 m |
|---|
| 1978 | if (jk.eq.i1000) trc2d(ji,jj,145) = fslowcflux(ji,jj) !! slow detritus flux at 1000 m |
|---|
| 1979 | trc2d(ji,jj,146) = trc2d(ji,jj,146) + ftot_c(ji,jj) !! carbon inventory |
|---|
| 1980 | trc2d(ji,jj,147) = trc2d(ji,jj,147) + ftot_a(ji,jj) !! alkalinity inventory |
|---|
| 1981 | trc2d(ji,jj,148) = trc2d(ji,jj,148) + ftot_o2(ji,jj) !! oxygen inventory |
|---|
| 1982 | if (jk.eq.mbathy(ji,jj)) then |
|---|
| 1983 | trc2d(ji,jj,149) = f_benout_lyso_ca(ji,jj) |
|---|
| 1984 | endif |
|---|
| 1985 | trc2d(ji,jj,150) = fcomm_resp(ji,jj) * fse3t(ji,jj,jk) !! community respiration |
|---|
| 1986 | !! |
|---|
| 1987 | !! AXY (14/02/14): a Valentines Day gift to BASIN - a shedload of new |
|---|
| 1988 | !! diagnostics that they'll most likely never need! |
|---|
| 1989 | !! (actually, as with all such gifts, I'm giving them |
|---|
| 1990 | !! some things I'd like myself!) |
|---|
| 1991 | !! |
|---|
| 1992 | !! ---------------------------------------------------------------------- |
|---|
| 1993 | !! linear losses |
|---|
| 1994 | !! non-diatom |
|---|
| 1995 | trc2d(ji,jj,151) = trc2d(ji,jj,151) + (fdpn2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1996 | !! diatom |
|---|
| 1997 | trc2d(ji,jj,152) = trc2d(ji,jj,152) + (fdpd2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 1998 | !! microzooplankton |
|---|
| 1999 | trc2d(ji,jj,153) = trc2d(ji,jj,153) + (fdzmi2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2000 | !! mesozooplankton |
|---|
| 2001 | trc2d(ji,jj,154) = trc2d(ji,jj,154) + (fdzme2(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2002 | !! ---------------------------------------------------------------------- |
|---|
| 2003 | !! microzooplankton grazing |
|---|
| 2004 | !! microzooplankton messy -> N |
|---|
| 2005 | trc2d(ji,jj,155) = trc2d(ji,jj,155) + (xphi * (fgmipn(ji,jj) + fgmid(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 2006 | !! microzooplankton messy -> D |
|---|
| 2007 | trc2d(ji,jj,156) = trc2d(ji,jj,156) + ((1. - xbetan) * finmi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2008 | !! microzooplankton messy -> DIC |
|---|
| 2009 | trc2d(ji,jj,157) = trc2d(ji,jj,157) + (xphi * ((xthetapn * fgmipn(ji,jj)) + fgmidc(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 2010 | !! microzooplankton messy -> Dc |
|---|
| 2011 | trc2d(ji,jj,158) = trc2d(ji,jj,158) + ((1. - xbetac) * ficmi(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2012 | !! microzooplankton excretion |
|---|
| 2013 | trc2d(ji,jj,159) = trc2d(ji,jj,159) + (fmiexcr(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2014 | !! microzooplankton respiration |
|---|
| 2015 | trc2d(ji,jj,160) = trc2d(ji,jj,160) + (fmiresp(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2016 | !! microzooplankton growth |
|---|
| 2017 | trc2d(ji,jj,161) = trc2d(ji,jj,161) + (fmigrow(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2018 | !! ---------------------------------------------------------------------- |
|---|
| 2019 | !! mesozooplankton grazing |
|---|
| 2020 | !! mesozooplankton messy -> N |
|---|
| 2021 | trc2d(ji,jj,162) = trc2d(ji,jj,162) + (xphi * (fgmepn(ji,jj) + fgmepd(ji,jj) + fgmezmi(ji,jj) + fgmed(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 2022 | !! mesozooplankton messy -> D |
|---|
| 2023 | trc2d(ji,jj,163) = trc2d(ji,jj,163) + ((1. - xbetan) * finme(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2024 | !! mesozooplankton messy -> DIC |
|---|
| 2025 | trc2d(ji,jj,164) = trc2d(ji,jj,164) + (xphi * ((xthetapn * fgmepn(ji,jj)) + (xthetapd * fgmepd(ji,jj)) + & |
|---|
| 2026 | & (xthetazmi * fgmezmi(ji,jj)) + fgmedc(ji,jj)) * fse3t(ji,jj,jk)) |
|---|
| 2027 | !! mesozooplankton messy -> Dc |
|---|
| 2028 | trc2d(ji,jj,165) = trc2d(ji,jj,165) + ((1. - xbetac) * ficme(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2029 | !! mesozooplankton excretion |
|---|
| 2030 | trc2d(ji,jj,166) = trc2d(ji,jj,166) + (fmeexcr(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2031 | !! mesozooplankton respiration |
|---|
| 2032 | trc2d(ji,jj,167) = trc2d(ji,jj,167) + (fmeresp(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2033 | !! mesozooplankton growth |
|---|
| 2034 | trc2d(ji,jj,168) = trc2d(ji,jj,168) + (fmegrow(ji,jj) * fse3t(ji,jj,jk)) |
|---|
| 2035 | !! ---------------------------------------------------------------------- |
|---|
| 2036 | !! miscellaneous |
|---|
| 2037 | trc2d(ji,jj,169) = trc2d(ji,jj,169) + (fddc(ji,jj) * fse3t(ji,jj,jk)) !! detrital C remineralisation |
|---|
| 2038 | trc2d(ji,jj,170) = trc2d(ji,jj,170) + (fgmidc(ji,jj) * fse3t(ji,jj,jk)) !! microzoo grazing on detrital carbon |
|---|
| 2039 | trc2d(ji,jj,171) = trc2d(ji,jj,171) + (fgmedc(ji,jj) * fse3t(ji,jj,jk)) !! mesozoo grazing on detrital carbon |
|---|
| 2040 | !! |
|---|
| 2041 | !! ---------------------------------------------------------------------- |
|---|
| 2042 | !! |
|---|
| 2043 | !! AXY (23/10/14): extract primary production related surface fields to |
|---|
| 2044 | !! deal with diel cycle issues; hijacking BASIN 150m |
|---|
| 2045 | !! diagnostics to do so (see commented out diagnostics |
|---|
| 2046 | !! below this section) |
|---|
| 2047 | !! |
|---|
| 2048 | !! extract relevant BASIN fields at 150m |
|---|
| 2049 | if (jk .eq. i0150) then |
|---|
| 2050 | trc2d(ji,jj,172) = trc2d(ji,jj,4) !! Pn PP |
|---|
| 2051 | trc2d(ji,jj,173) = trc2d(ji,jj,151) !! Pn linear loss |
|---|
| 2052 | trc2d(ji,jj,174) = trc2d(ji,jj,5) !! Pn non-linear loss |
|---|
| 2053 | trc2d(ji,jj,175) = trc2d(ji,jj,11) !! Pn grazing to Zmi |
|---|
| 2054 | trc2d(ji,jj,176) = trc2d(ji,jj,14) !! Pn grazing to Zme |
|---|
| 2055 | trc2d(ji,jj,177) = trc2d(ji,jj,6) !! Pd PP |
|---|
| 2056 | trc2d(ji,jj,178) = trc2d(ji,jj,152) !! Pd linear loss |
|---|
| 2057 | trc2d(ji,jj,179) = trc2d(ji,jj,7) !! Pd non-linear loss |
|---|
| 2058 | trc2d(ji,jj,180) = trc2d(ji,jj,15) !! Pd grazing to Zme |
|---|
| 2059 | trc2d(ji,jj,181) = trc2d(ji,jj,12) !! Zmi grazing on D |
|---|
| 2060 | trc2d(ji,jj,182) = trc2d(ji,jj,170) !! Zmi grazing on Dc |
|---|
| 2061 | trc2d(ji,jj,183) = trc2d(ji,jj,155) !! Zmi messy feeding loss to N |
|---|
| 2062 | trc2d(ji,jj,184) = trc2d(ji,jj,156) !! Zmi messy feeding loss to D |
|---|
| 2063 | trc2d(ji,jj,185) = trc2d(ji,jj,157) !! Zmi messy feeding loss to DIC |
|---|
| 2064 | trc2d(ji,jj,186) = trc2d(ji,jj,158) !! Zmi messy feeding loss to Dc |
|---|
| 2065 | trc2d(ji,jj,187) = trc2d(ji,jj,159) !! Zmi excretion |
|---|
| 2066 | trc2d(ji,jj,188) = trc2d(ji,jj,160) !! Zmi respiration |
|---|
| 2067 | trc2d(ji,jj,189) = trc2d(ji,jj,161) !! Zmi growth |
|---|
| 2068 | trc2d(ji,jj,190) = trc2d(ji,jj,153) !! Zmi linear loss |
|---|
| 2069 | trc2d(ji,jj,191) = trc2d(ji,jj,13) !! Zmi non-linear loss |
|---|
| 2070 | trc2d(ji,jj,192) = trc2d(ji,jj,16) !! Zmi grazing to Zme |
|---|
| 2071 | trc2d(ji,jj,193) = trc2d(ji,jj,17) !! Zme grazing on D |
|---|
| 2072 | trc2d(ji,jj,194) = trc2d(ji,jj,171) !! Zme grazing on Dc |
|---|
| 2073 | trc2d(ji,jj,195) = trc2d(ji,jj,162) !! Zme messy feeding loss to N |
|---|
| 2074 | trc2d(ji,jj,196) = trc2d(ji,jj,163) !! Zme messy feeding loss to D |
|---|
| 2075 | trc2d(ji,jj,197) = trc2d(ji,jj,164) !! Zme messy feeding loss to DIC |
|---|
| 2076 | trc2d(ji,jj,198) = trc2d(ji,jj,165) !! Zme messy feeding loss to Dc |
|---|
| 2077 | trc2d(ji,jj,199) = trc2d(ji,jj,166) !! Zme excretion |
|---|
| 2078 | trc2d(ji,jj,200) = trc2d(ji,jj,167) !! Zme respiration |
|---|
| 2079 | trc2d(ji,jj,201) = trc2d(ji,jj,168) !! Zme growth |
|---|
| 2080 | trc2d(ji,jj,202) = trc2d(ji,jj,154) !! Zme linear loss |
|---|
| 2081 | trc2d(ji,jj,203) = trc2d(ji,jj,18) !! Zme non-linear loss |
|---|
| 2082 | trc2d(ji,jj,204) = trc2d(ji,jj,20) !! Slow detritus production, N |
|---|
| 2083 | trc2d(ji,jj,205) = trc2d(ji,jj,21) !! Slow detritus remineralisation, N |
|---|
| 2084 | trc2d(ji,jj,206) = trc2d(ji,jj,141) !! Slow detritus production, C |
|---|
| 2085 | trc2d(ji,jj,207) = trc2d(ji,jj,169) !! Slow detritus remineralisation, C |
|---|
| 2086 | trc2d(ji,jj,208) = trc2d(ji,jj,43) !! Fast detritus production, N |
|---|
| 2087 | trc2d(ji,jj,209) = trc2d(ji,jj,21) !! Fast detritus remineralisation, N |
|---|
| 2088 | trc2d(ji,jj,210) = trc2d(ji,jj,64) !! Fast detritus production, C |
|---|
| 2089 | trc2d(ji,jj,211) = trc2d(ji,jj,67) !! Fast detritus remineralisation, C |
|---|
| 2090 | trc2d(ji,jj,212) = trc2d(ji,jj,150) !! Community respiration |
|---|
| 2091 | trc2d(ji,jj,213) = fslownflux(ji,jj) !! Slow detritus N flux at 150 m |
|---|
| 2092 | trc2d(ji,jj,214) = fslowcflux(ji,jj) !! Slow detritus C flux at 150 m |
|---|
| 2093 | trc2d(ji,jj,215) = ffastn(ji,jj) !! Fast detritus N flux at 150 m |
|---|
| 2094 | trc2d(ji,jj,216) = ffastc(ji,jj) !! Fast detritus C flux at 150 m |
|---|
| 2095 | endif |
|---|
| 2096 | !! |
|---|
| 2097 | !! Jpalm (11-08-2014) |
|---|
| 2098 | !! Add UKESM1 diagnoatics |
|---|
| 2099 | !!^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ |
|---|
| 2100 | if ((jk .eq. 1) .and.( jdms.eq.1)) then |
|---|
| 2101 | trc2d(ji,jj,221) = dms_surf(ji,jj) !! DMS surface concentration |
|---|
| 2102 | !! AXY (13/03/15): add in other DMS estimates |
|---|
| 2103 | trc2d(ji,jj,222) = dms_andr(ji,jj) !! DMS surface concentration |
|---|
| 2104 | trc2d(ji,jj,223) = dms_simo(ji,jj) !! DMS surface concentration |
|---|
| 2105 | trc2d(ji,jj,224) = dms_aran(ji,jj) !! DMS surface concentration |
|---|
| 2106 | trc2d(ji,jj,225) = dms_hall(ji,jj) !! DMS surface concentration |
|---|
| 2107 | endif |
|---|
| 2108 | # endif |
|---|
| 2109 | !! other possible future diagnostics include: |
|---|
| 2110 | !! - integrated tracer values (esp. biological) |
|---|
| 2111 | !! - mixed layer tracer values |
|---|
| 2112 | !! - sub-surface chlorophyll maxima (plus depth) |
|---|
| 2113 | !! - different mixed layer depth criteria (T, sigma, var. sigma) |
|---|
| 2114 | |
|---|
| 2115 | !!---------------------------------------------------------------------- |
|---|
| 2116 | !! Prepare 3D diagnostics |
|---|
| 2117 | !!---------------------------------------------------------------------- |
|---|
| 2118 | !! |
|---|
| 2119 | trc3d(ji,jj,jk,1) = ((fprn(ji,jj) + fprd(ji,jj)) * zphn(ji,jj)) !! primary production |
|---|
| 2120 | trc3d(ji,jj,jk,2) = fslownflux(ji,jj) + ffastn(ji,jj) !! detrital flux |
|---|
| 2121 | trc3d(ji,jj,jk,3) = fregen(ji,jj) + (freminn(ji,jj) * fse3t(ji,jj,jk)) !! remineralisation |
|---|
| 2122 | # if defined key_roam |
|---|
| 2123 | trc3d(ji,jj,jk,4) = f3_pH(ji,jj,jk) !! pH |
|---|
| 2124 | trc3d(ji,jj,jk,5) = f3_omcal(ji,jj,jk) !! omega calcite |
|---|
| 2125 | # else |
|---|
| 2126 | trc3d(ji,jj,jk,4) = ffastsi(ji,jj) !! fast Si flux |
|---|
| 2127 | # endif |
|---|
| 2128 | ENDIF ! end of ln_diatrc option |
|---|
| 2129 | !! CLOSE wet point IF..THEN loop |
|---|
| 2130 | endif |
|---|
| 2131 | !! CLOSE horizontal loops |
|---|
| 2132 | ENDDO |
|---|
| 2133 | ENDDO |
|---|
| 2134 | !! |
|---|
| 2135 | IF( lk_iomput .AND. .NOT. ln_diatrc ) THEN |
|---|
| 2136 | |
|---|
| 2137 | !!------------------------------------------------------- |
|---|
| 2138 | !! 2d specific k level diags |
|---|
| 2139 | !!------------------------------------------------------- |
|---|
| 2140 | CALL bio_medusa_diag_slice( jk ) |
|---|
| 2141 | |
|---|
| 2142 | ENDIF |
|---|
| 2143 | !! CLOSE vertical loop |
|---|
| 2144 | ENDDO |
|---|
| 2145 | |
|---|
| 2146 | !!---------------------------------------------------------------------- |
|---|
| 2147 | !! Final calculations for diagnostics |
|---|
| 2148 | !!---------------------------------------------------------------------- |
|---|
| 2149 | CALL bio_medusa_fin( kt ) |
|---|
| 2150 | |
|---|
| 2151 | # if defined key_trc_diabio |
|---|
| 2152 | !! Lateral boundary conditions on trcbio |
|---|
| 2153 | DO jn=1,jp_medusa_trd |
|---|
| 2154 | CALL lbc_lnk(trbio(:,:,1,jn),'T',1. ) |
|---|
| 2155 | ENDDO |
|---|
| 2156 | # endif |
|---|
| 2157 | |
|---|
| 2158 | # if defined key_debug_medusa |
|---|
| 2159 | IF(lwp) WRITE(numout,*) ' MEDUSA exiting trc_bio_medusa at kt =', kt |
|---|
| 2160 | CALL flush(numout) |
|---|
| 2161 | # endif |
|---|
| 2162 | |
|---|
| 2163 | END SUBROUTINE trc_bio_medusa |
|---|
| 2164 | |
|---|
| 2165 | #else |
|---|
| 2166 | !!====================================================================== |
|---|
| 2167 | !! Dummy module : No MEDUSA bio-model |
|---|
| 2168 | !!====================================================================== |
|---|
| 2169 | CONTAINS |
|---|
| 2170 | SUBROUTINE trc_bio_medusa( kt ) ! Empty routine |
|---|
| 2171 | INTEGER, INTENT( in ) :: kt |
|---|
| 2172 | WRITE(*,*) 'trc_bio_medusa: You should not have seen this print! error?', kt |
|---|
| 2173 | END SUBROUTINE trc_bio_medusa |
|---|
| 2174 | #endif |
|---|
| 2175 | |
|---|
| 2176 | !!====================================================================== |
|---|
| 2177 | END MODULE trcbio_medusa |
|---|
