| 1 | !!---------------------------------------------------------------------- |
|---|
| 2 | !! *** trclsm.lobster1.h90 *** |
|---|
| 3 | !! TOP : Definition some run parameter for LOBSTER biological model |
|---|
| 4 | !!---------------------------------------------------------------------- |
|---|
| 5 | !! History : - ! 1999-10 (M.A. Foujols, M. Levy) original code |
|---|
| 6 | !! - ! 2000-12 (O. Aumont, E. Kestenare) add sediments |
|---|
| 7 | !! 1.0 ! 2003-08 (C. Ethe) Original code |
|---|
| 8 | !!---------------------------------------------------------------------- |
|---|
| 9 | |
|---|
| 10 | !!---------------------------------------------------------------------- |
|---|
| 11 | !! NEMO/TOP 1.0 , LOCEAN-IPSL (2005) |
|---|
| 12 | !! $Id $ |
|---|
| 13 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
|---|
| 14 | !!---------------------------------------------------------------------- |
|---|
| 15 | |
|---|
| 16 | CONTAINS |
|---|
| 17 | |
|---|
| 18 | SUBROUTINE trc_lsm |
|---|
| 19 | !!---------------------------------------------------------------------- |
|---|
| 20 | !! *** trc_lsm *** |
|---|
| 21 | !! |
|---|
| 22 | !! ** Purpose : read LOBSTER namelist |
|---|
| 23 | !! |
|---|
| 24 | !! ** input : file 'namelist.trc.sms' containing the following |
|---|
| 25 | !! namelist: natbio, natopt, and natdbi ("key_trc_diabio") |
|---|
| 26 | !!---------------------------------------------------------------------- |
|---|
| 27 | CHARACTER (len=32) :: clname |
|---|
| 28 | !! |
|---|
| 29 | NAMELIST/natbio/ apmin, azmin, anmin, admin, & |
|---|
| 30 | & redf, reddom, slopet, toptp, psinut, akno3, aknh4, rcchl, & |
|---|
| 31 | & rgamma, toptgz, tmaxgz, rgz, & |
|---|
| 32 | & rppz, taus, aks, filmax, rpnaz, rdnaz, eggzoo, tauzn, & |
|---|
| 33 | & tmmaxp, tmminp, tmmaxz, tmminz, anumin, afdmin, taudn, & |
|---|
| 34 | & vsed, tmumax, aki, tmaxr, tminr, taunn, taudomn, xhr, & |
|---|
| 35 | & sedlam, sedlostpoc, & |
|---|
| 36 | & fphylab, fzoolab, fdetlab, fdbod |
|---|
| 37 | NAMELIST/natopt/ xkg0, xkr0, xkgp, xkrp, xlg, xlr, rpig |
|---|
| 38 | #if defined key_trc_diabio |
|---|
| 39 | INTEGER :: ji |
|---|
| 40 | NAMELIST/natdbi/ctrbio,ctrbil,ctrbiu,nwritebio |
|---|
| 41 | #endif |
|---|
| 42 | !!---------------------------------------------------------------------- |
|---|
| 43 | |
|---|
| 44 | IF(lwp) WRITE(numout,*) |
|---|
| 45 | IF(lwp) WRITE(numout,*) ' trc_lsm : read LOBSTER 1 namelists' |
|---|
| 46 | IF(lwp) WRITE(numout,*) ' ~~~~~~~' |
|---|
| 47 | |
|---|
| 48 | ! ! Open the namelist file |
|---|
| 49 | ! ! ---------------------- |
|---|
| 50 | clname ='namelist.trc.sms' |
|---|
| 51 | CALL ctlopn( numnat, clname, 'OLD', 'FORMATTED', 'SEQUENTIAL', & |
|---|
| 52 | & 1, numout, .FALSE., 1 ) |
|---|
| 53 | |
|---|
| 54 | ! ! natbio : biological parameters |
|---|
| 55 | ! ! ------------------------------ |
|---|
| 56 | apmin = 0. ! default values |
|---|
| 57 | azmin = 0. |
|---|
| 58 | anmin = 0. |
|---|
| 59 | admin = 0. |
|---|
| 60 | redf = 0. |
|---|
| 61 | reddom = 0. |
|---|
| 62 | slopet = 0. |
|---|
| 63 | toptp = 0. |
|---|
| 64 | psinut = 0. |
|---|
| 65 | akno3 = 0. |
|---|
| 66 | aknh4 = 0. |
|---|
| 67 | rcchl = 0. |
|---|
| 68 | rgamma= 0. |
|---|
| 69 | toptgz= 0. |
|---|
| 70 | tmaxgz= 0. |
|---|
| 71 | rgz = 0. |
|---|
| 72 | rppz = 0. |
|---|
| 73 | taus = 0. |
|---|
| 74 | aks = 0. |
|---|
| 75 | filmax= 0. |
|---|
| 76 | rpnaz = 0. |
|---|
| 77 | rdnaz = 0. |
|---|
| 78 | eggzoo= 0. |
|---|
| 79 | tauzn = 0. |
|---|
| 80 | tmmaxp= 0. |
|---|
| 81 | tmminp= 0. |
|---|
| 82 | tmmaxz= 0. |
|---|
| 83 | tmminz= 0. |
|---|
| 84 | anumin= 0. |
|---|
| 85 | afdmin= 0. |
|---|
| 86 | taudn = 0. |
|---|
| 87 | vsed = 0. |
|---|
| 88 | tmumax= 0. |
|---|
| 89 | aki = 0. |
|---|
| 90 | tmaxr = 1./( 4.*rday)*0. |
|---|
| 91 | tminr = 1./(24.*30.*rday)*0. |
|---|
| 92 | xhr=0. |
|---|
| 93 | sedlam=0. |
|---|
| 94 | sedlostpoc=0. |
|---|
| 95 | taudomn = 0. |
|---|
| 96 | taunn = 0. |
|---|
| 97 | fphylab = 0. |
|---|
| 98 | fzoolab = 0. |
|---|
| 99 | fdetlab = 0. |
|---|
| 100 | fdbod = 0. |
|---|
| 101 | |
|---|
| 102 | REWIND( numnat ) ! read natbio |
|---|
| 103 | READ ( numnat, natbio ) |
|---|
| 104 | |
|---|
| 105 | IF(lwp) THEN |
|---|
| 106 | WRITE(numout,*) ' Namelist natbio' |
|---|
| 107 | WRITE(numout,*) ' minimum phytoplancton concentration apmin =', apmin |
|---|
| 108 | WRITE(numout,*) ' minimum zooplancton concentration azmin =', azmin |
|---|
| 109 | WRITE(numout,*) ' minimum nutrients concentration anmin =', anmin |
|---|
| 110 | WRITE(numout,*) ' minimum detritus concentration admin =', admin |
|---|
| 111 | WRITE(numout,*) ' redfield ratio c:n redf =', redf |
|---|
| 112 | WRITE(numout,*) ' van t hoff coefficient slopet =', slopet |
|---|
| 113 | WRITE(numout,*) ' optimal photosynthesis temperature toptp =', toptp |
|---|
| 114 | WRITE(numout,*) ' inhibition of no3 uptake by nh4 psinut =', psinut |
|---|
| 115 | WRITE(numout,*) ' half-saturation nutrient for no3 uptake akno3 =', akno3 |
|---|
| 116 | WRITE(numout,*) ' half-saturation nutrient for nh4 uptake aknh4 =', aknh4 |
|---|
| 117 | WRITE(numout,*) ' carbone/chlorophyl ratio rcchl =', rcchl |
|---|
| 118 | WRITE(numout,*) ' phytoplankton exudation fraction rgamma =', rgamma |
|---|
| 119 | WRITE(numout,*) ' optimal temperature for zoo growth toptgz =', toptgz |
|---|
| 120 | WRITE(numout,*) ' maximal temperature for zoo growth tmaxgz =', tmaxgz |
|---|
| 121 | WRITE(numout,*) ' widtht of zoo temperature FUNCTION rgz =', rgz |
|---|
| 122 | WRITE(numout,*) ' zoo preference for phyto rppz =', rppz |
|---|
| 123 | WRITE(numout,*) ' maximal zoo grazing rate taus =', 86400 * taus, ' d' |
|---|
| 124 | WRITE(numout,*) ' half saturation constant for zoo food aks =', aks |
|---|
| 125 | WRITE(numout,*) ' maximal mass clearance rate for zoo filmax =', filmax |
|---|
| 126 | WRITE(numout,*) ' non-assimilated phyto by zoo rpnaz =', rpnaz |
|---|
| 127 | WRITE(numout,*) ' non-assimilated detritus by zoo rdnaz =', rdnaz |
|---|
| 128 | WRITE(numout,*) ' minimum for zoo concentration eggzoo =', eggzoo |
|---|
| 129 | WRITE(numout,*) ' zoo specific excretion rate tauzn =', 86400 * tauzn |
|---|
| 130 | WRITE(numout,*) ' maximal phyto mortality rate tmmaxp =', 86400 * tmmaxp |
|---|
| 131 | WRITE(numout,*) ' minimal phyto mortality rate tmminp =', 86400 * tmminp |
|---|
| 132 | WRITE(numout,*) ' maximal zoo mortality rate tmmaxz =', 86400 * tmmaxz |
|---|
| 133 | WRITE(numout,*) ' minimal zoo mortality rate tmminz =', 86400 * tmminz |
|---|
| 134 | WRITE(numout,*) ' nutrient threshold for phyto mort anumin =', anumin |
|---|
| 135 | WRITE(numout,*) ' food threshold for zoo mort afdmin =', afdmin |
|---|
| 136 | WRITE(numout,*) ' detrital breakdown rate taudn =', 86400 * taudn , ' d' |
|---|
| 137 | WRITE(numout,*) ' detritus sedimentation speed vsed =', 86400 * vsed , ' d' |
|---|
| 138 | WRITE(numout,*) ' phyto max growth rate tmumax =', 86400 * tmumax, ' d' |
|---|
| 139 | WRITE(numout,*) ' light hlaf saturation constant aki =', aki |
|---|
| 140 | WRITE(numout,*) ' maximum damping for d z or p tmaxr =', tmaxr |
|---|
| 141 | WRITE(numout,*) ' damping-remineralisation rate tminr =', tminr |
|---|
| 142 | WRITE(numout,*) ' nitrification rate taunn =', taunn |
|---|
| 143 | WRITE(numout,*) ' dom remineralisation rate taudomn =', taudomn |
|---|
| 144 | WRITE(numout,*) ' coeff for martin''s remineralistion xhr =', xhr |
|---|
| 145 | WRITE(numout,*) ' time coeff of POC in sediments sedlam =', sedlam |
|---|
| 146 | WRITE(numout,*) ' Sediment geol loss for POC sedlostpoc=', sedlostpoc |
|---|
| 147 | WRITE(numout,*) ' NH4 fraction of phytoplankton exsudation fphylab =', fphylab |
|---|
| 148 | WRITE(numout,*) ' NH4 fraction of zooplankton excretion fzoolab =', fzoolab |
|---|
| 149 | WRITE(numout,*) ' NH4 fraction of detritus dissolution fdetlab =', fdetlab |
|---|
| 150 | WRITE(numout,*) ' Zooplankton mortality fraction that goes to detritus fdbod =', fdbod |
|---|
| 151 | ENDIF |
|---|
| 152 | |
|---|
| 153 | ! ! natopt : optical parameters |
|---|
| 154 | ! ! --------------------------- |
|---|
| 155 | xkg0 = 0. ! default values |
|---|
| 156 | xkr0 = 0. |
|---|
| 157 | xkgp = 0. |
|---|
| 158 | xkrp = 0. |
|---|
| 159 | xlg = 0. |
|---|
| 160 | xlr = 0. |
|---|
| 161 | rpig = 0. |
|---|
| 162 | |
|---|
| 163 | REWIND( numnat ) ! read natopt |
|---|
| 164 | READ ( numnat, natopt ) |
|---|
| 165 | |
|---|
| 166 | IF(lwp) THEN ! control print |
|---|
| 167 | WRITE(numout,*) |
|---|
| 168 | WRITE(numout,*) ' Namelist natopt' |
|---|
| 169 | WRITE(numout,*) ' green water absorption coeff xkg0 = ', xkg0 |
|---|
| 170 | WRITE(numout,*) ' red water absorption coeff xkr0 = ', xkr0 |
|---|
| 171 | WRITE(numout,*) ' pigment red absorption coeff xkrp = ', xkrp |
|---|
| 172 | WRITE(numout,*) ' pigment green absorption coeff xkgp = ', xkgp |
|---|
| 173 | WRITE(numout,*) ' green chl exposant xlg = ', xlg |
|---|
| 174 | WRITE(numout,*) ' red chl exposant xlr = ', xlr |
|---|
| 175 | WRITE(numout,*) ' chla/chla+phea ratio rpig = ', rpig |
|---|
| 176 | ENDIF |
|---|
| 177 | |
|---|
| 178 | #if defined key_trc_diabio |
|---|
| 179 | |
|---|
| 180 | ! ! natdbi : bio diagnostics |
|---|
| 181 | ! ! ------------------------ |
|---|
| 182 | nwritebio = 10 ! default values |
|---|
| 183 | DO ji = 1, jpdiabio |
|---|
| 184 | IF( ji < 10 ) THEN ; WRITE (ctrbio(ji),'("BIO_",I1)') ji ! short name |
|---|
| 185 | ELSEIF (ji < 100 ) THEN ; WRITE (ctrbio(ji),'("BIO_",I2)') ji |
|---|
| 186 | ELSE ; WRITE (ctrbio(ji),'("BIO_",I3)') ji |
|---|
| 187 | ENDIF |
|---|
| 188 | WRITE(ctrbil(ji),'("BIOLOGICAL TREND NUMBER ",I2)') ji ! long name |
|---|
| 189 | ctrbiu(ji) = 'mmoleN/m3/s ' ! units |
|---|
| 190 | END DO |
|---|
| 191 | |
|---|
| 192 | REWIND( numnat ) ! read natdbi |
|---|
| 193 | READ ( numnat, natdbi ) |
|---|
| 194 | |
|---|
| 195 | IF(lwp) THEN |
|---|
| 196 | WRITE(numout,*) |
|---|
| 197 | WRITE(numout,*) ' Namelist natdbi' |
|---|
| 198 | WRITE(numout,*) ' frequency of outputs for biological outputs nwritebio = ', nwritebio |
|---|
| 199 | DO ji = 1, jpdiabio |
|---|
| 200 | WRITE(numout,*) ' name of biological trend No :',ji,' : ',ctrbio(ji), ctrbil(ji), ' in ', ctrbiu(ji) |
|---|
| 201 | END DO |
|---|
| 202 | END IF |
|---|
| 203 | #endif |
|---|
| 204 | ! |
|---|
| 205 | END SUBROUTINE trc_lsm |
|---|
