| 1 | MODULE trclsm_lobster |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE trclsm_lobster *** |
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| 4 | !! TOP : initialisation of some run parameters for LOBSTER bio-model |
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| 5 | !!====================================================================== |
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| 6 | !! History : 2.0 ! 2007-12 (C. Ethe, G. Madec) from trclsm.lobster1.h90 |
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| 7 | !!---------------------------------------------------------------------- |
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| 8 | #if defined key_lobster |
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| 9 | !!---------------------------------------------------------------------- |
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| 10 | !! 'key_lobster' : LOBSTER bio-model |
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| 11 | !!---------------------------------------------------------------------- |
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| 12 | !! trc_lsm_lobster : LOBSTER model namelist read |
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| 13 | !!---------------------------------------------------------------------- |
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| 14 | USE oce_trc ! Ocean variables |
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| 15 | USE par_trc ! TOP parameters |
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| 16 | USE trc ! TOP variables |
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| 17 | USE sms ! sms trends |
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| 18 | |
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| 19 | IMPLICIT NONE |
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| 20 | PRIVATE |
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| 21 | |
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| 22 | PUBLIC trc_lsm_lobster ! called by trclsm.F90 module |
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| 23 | |
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| 24 | !!---------------------------------------------------------------------- |
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| 25 | !! NEMO/TOP 2.0 , LOCEAN-IPSL (2007) |
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| 26 | !! $Id$ |
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| 27 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
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| 28 | !!---------------------------------------------------------------------- |
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| 29 | |
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| 30 | CONTAINS |
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| 31 | |
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| 32 | SUBROUTINE trc_lsm_lobster |
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| 33 | !!---------------------------------------------------------------------- |
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| 34 | !! *** trc_lsm_lobster *** |
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| 35 | !! |
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| 36 | !! ** Purpose : read LOBSTER namelist |
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| 37 | !! |
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| 38 | !! ** input : file 'namelist.trc.sms' containing the following |
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| 39 | !! namelist: natbio, natopt, and natdbi ("key_trc_diabio") |
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| 40 | !!---------------------------------------------------------------------- |
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| 41 | CHARACTER (len=32) :: clname |
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| 42 | !! |
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| 43 | NAMELIST/natbio/ apmin, azmin, anmin, admin, & |
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| 44 | & redf, reddom, slopet, toptp, psinut, akno3, aknh4, rcchl, & |
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| 45 | & rgamma, toptgz, tmaxgz, rgz, & |
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| 46 | & rppz, taus, aks, filmax, rpnaz, rdnaz, eggzoo, tauzn, & |
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| 47 | & tmmaxp, tmminp, tmmaxz, tmminz, anumin, afdmin, taudn, & |
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| 48 | & vsed, tmumax, aki, tmaxr, tminr, taunn, taudomn, xhr, & |
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| 49 | & sedlam, sedlostpoc, & |
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| 50 | & fphylab, fzoolab, fdetlab, fdbod |
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| 51 | NAMELIST/natopt/ xkg0, xkr0, xkgp, xkrp, xlg, xlr, rpig |
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| 52 | #if defined key_trc_diabio |
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| 53 | INTEGER :: ji |
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| 54 | NAMELIST/natdbi/ctrbio,ctrbil,ctrbiu,nwritebio |
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| 55 | #endif |
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| 56 | !!---------------------------------------------------------------------- |
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| 57 | |
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| 58 | IF(lwp) WRITE(numout,*) |
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| 59 | IF(lwp) WRITE(numout,*) ' trc_lsm_lobster : read LOBSTER namelists' |
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| 60 | IF(lwp) WRITE(numout,*) ' ~~~~~~~~~~~~~~~' |
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| 61 | |
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| 62 | ! ! Open the namelist file |
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| 63 | ! ! ---------------------- |
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| 64 | clname ='namelist.trc.sms' |
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| 65 | CALL ctlopn( numnat, clname, 'OLD', 'FORMATTED', 'SEQUENTIAL', & |
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| 66 | & 1, numout, .FALSE., 1 ) |
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| 67 | |
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| 68 | ! ! natbio : biological parameters |
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| 69 | ! ! ------------------------------ |
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| 70 | apmin = 0. ! default values |
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| 71 | azmin = 0. |
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| 72 | anmin = 0. |
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| 73 | admin = 0. |
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| 74 | redf = 0. |
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| 75 | reddom = 0. |
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| 76 | slopet = 0. |
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| 77 | toptp = 0. |
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| 78 | psinut = 0. |
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| 79 | akno3 = 0. |
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| 80 | aknh4 = 0. |
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| 81 | rcchl = 0. |
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| 82 | rgamma= 0. |
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| 83 | toptgz= 0. |
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| 84 | tmaxgz= 0. |
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| 85 | rgz = 0. |
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| 86 | rppz = 0. |
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| 87 | taus = 0. |
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| 88 | aks = 0. |
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| 89 | filmax= 0. |
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| 90 | rpnaz = 0. |
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| 91 | rdnaz = 0. |
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| 92 | eggzoo= 0. |
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| 93 | tauzn = 0. |
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| 94 | tmmaxp= 0. |
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| 95 | tmminp= 0. |
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| 96 | tmmaxz= 0. |
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| 97 | tmminz= 0. |
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| 98 | anumin= 0. |
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| 99 | afdmin= 0. |
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| 100 | taudn = 0. |
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| 101 | vsed = 0. |
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| 102 | tmumax= 0. |
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| 103 | aki = 0. |
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| 104 | tmaxr = 1./( 4.*rday)*0. |
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| 105 | tminr = 1./(24.*30.*rday)*0. |
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| 106 | xhr=0. |
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| 107 | sedlam=0. |
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| 108 | sedlostpoc=0. |
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| 109 | taudomn = 0. |
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| 110 | taunn = 0. |
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| 111 | fphylab = 0. |
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| 112 | fzoolab = 0. |
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| 113 | fdetlab = 0. |
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| 114 | fdbod = 0. |
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| 115 | |
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| 116 | REWIND( numnat ) ! read natbio |
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| 117 | READ ( numnat, natbio ) |
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| 118 | |
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| 119 | IF(lwp) THEN |
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| 120 | WRITE(numout,*) ' Namelist natbio' |
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| 121 | WRITE(numout,*) ' minimum phytoplancton concentration apmin =', apmin |
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| 122 | WRITE(numout,*) ' minimum zooplancton concentration azmin =', azmin |
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| 123 | WRITE(numout,*) ' minimum nutrients concentration anmin =', anmin |
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| 124 | WRITE(numout,*) ' minimum detritus concentration admin =', admin |
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| 125 | WRITE(numout,*) ' redfield ratio c:n redf =', redf |
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| 126 | WRITE(numout,*) ' van t hoff coefficient slopet =', slopet |
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| 127 | WRITE(numout,*) ' optimal photosynthesis temperature toptp =', toptp |
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| 128 | WRITE(numout,*) ' inhibition of no3 uptake by nh4 psinut =', psinut |
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| 129 | WRITE(numout,*) ' half-saturation nutrient for no3 uptake akno3 =', akno3 |
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| 130 | WRITE(numout,*) ' half-saturation nutrient for nh4 uptake aknh4 =', aknh4 |
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| 131 | WRITE(numout,*) ' carbone/chlorophyl ratio rcchl =', rcchl |
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| 132 | WRITE(numout,*) ' phytoplankton exudation fraction rgamma =', rgamma |
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| 133 | WRITE(numout,*) ' optimal temperature for zoo growth toptgz =', toptgz |
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| 134 | WRITE(numout,*) ' maximal temperature for zoo growth tmaxgz =', tmaxgz |
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| 135 | WRITE(numout,*) ' widtht of zoo temperature FUNCTION rgz =', rgz |
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| 136 | WRITE(numout,*) ' zoo preference for phyto rppz =', rppz |
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| 137 | WRITE(numout,*) ' maximal zoo grazing rate taus =', 86400 * taus, ' d' |
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| 138 | WRITE(numout,*) ' half saturation constant for zoo food aks =', aks |
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| 139 | WRITE(numout,*) ' maximal mass clearance rate for zoo filmax =', filmax |
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| 140 | WRITE(numout,*) ' non-assimilated phyto by zoo rpnaz =', rpnaz |
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| 141 | WRITE(numout,*) ' non-assimilated detritus by zoo rdnaz =', rdnaz |
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| 142 | WRITE(numout,*) ' minimum for zoo concentration eggzoo =', eggzoo |
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| 143 | WRITE(numout,*) ' zoo specific excretion rate tauzn =', 86400 * tauzn |
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| 144 | WRITE(numout,*) ' maximal phyto mortality rate tmmaxp =', 86400 * tmmaxp |
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| 145 | WRITE(numout,*) ' minimal phyto mortality rate tmminp =', 86400 * tmminp |
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| 146 | WRITE(numout,*) ' maximal zoo mortality rate tmmaxz =', 86400 * tmmaxz |
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| 147 | WRITE(numout,*) ' minimal zoo mortality rate tmminz =', 86400 * tmminz |
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| 148 | WRITE(numout,*) ' nutrient threshold for phyto mort anumin =', anumin |
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| 149 | WRITE(numout,*) ' food threshold for zoo mort afdmin =', afdmin |
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| 150 | WRITE(numout,*) ' detrital breakdown rate taudn =', 86400 * taudn , ' d' |
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| 151 | WRITE(numout,*) ' detritus sedimentation speed vsed =', 86400 * vsed , ' d' |
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| 152 | WRITE(numout,*) ' phyto max growth rate tmumax =', 86400 * tmumax, ' d' |
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| 153 | WRITE(numout,*) ' light hlaf saturation constant aki =', aki |
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| 154 | WRITE(numout,*) ' maximum damping for d z or p tmaxr =', tmaxr |
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| 155 | WRITE(numout,*) ' damping-remineralisation rate tminr =', tminr |
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| 156 | WRITE(numout,*) ' nitrification rate taunn =', taunn |
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| 157 | WRITE(numout,*) ' dom remineralisation rate taudomn =', taudomn |
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| 158 | WRITE(numout,*) ' coeff for martin''s remineralistion xhr =', xhr |
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| 159 | WRITE(numout,*) ' time coeff of POC in sediments sedlam =', sedlam |
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| 160 | WRITE(numout,*) ' Sediment geol loss for POC sedlostpoc=', sedlostpoc |
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| 161 | WRITE(numout,*) ' NH4 fraction of phytoplankton exsudation fphylab =', fphylab |
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| 162 | WRITE(numout,*) ' NH4 fraction of zooplankton excretion fzoolab =', fzoolab |
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| 163 | WRITE(numout,*) ' NH4 fraction of detritus dissolution fdetlab =', fdetlab |
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| 164 | WRITE(numout,*) ' Zooplankton mortality fraction that goes to detritus fdbod =', fdbod |
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| 165 | ENDIF |
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| 166 | |
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| 167 | ! ! natopt : optical parameters |
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| 168 | ! ! --------------------------- |
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| 169 | xkg0 = 0. ! default values |
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| 170 | xkr0 = 0. |
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| 171 | xkgp = 0. |
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| 172 | xkrp = 0. |
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| 173 | xlg = 0. |
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| 174 | xlr = 0. |
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| 175 | rpig = 0. |
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| 176 | |
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| 177 | REWIND( numnat ) ! read natopt |
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| 178 | READ ( numnat, natopt ) |
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| 179 | |
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| 180 | IF(lwp) THEN ! control print |
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| 181 | WRITE(numout,*) |
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| 182 | WRITE(numout,*) ' Namelist natopt' |
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| 183 | WRITE(numout,*) ' green water absorption coeff xkg0 = ', xkg0 |
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| 184 | WRITE(numout,*) ' red water absorption coeff xkr0 = ', xkr0 |
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| 185 | WRITE(numout,*) ' pigment red absorption coeff xkrp = ', xkrp |
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| 186 | WRITE(numout,*) ' pigment green absorption coeff xkgp = ', xkgp |
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| 187 | WRITE(numout,*) ' green chl exposant xlg = ', xlg |
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| 188 | WRITE(numout,*) ' red chl exposant xlr = ', xlr |
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| 189 | WRITE(numout,*) ' chla/chla+phea ratio rpig = ', rpig |
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| 190 | ENDIF |
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| 191 | |
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| 192 | #if defined key_trc_diabio |
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| 193 | |
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| 194 | ! ! natdbi : bio diagnostics |
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| 195 | ! ! ------------------------ |
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| 196 | nwritebio = 10 ! default values |
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| 197 | DO ji = 1, jpdiabio |
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| 198 | IF( ji < 10 ) THEN ; WRITE (ctrbio(ji),'("BIO_",I1)') ji ! short name |
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| 199 | ELSEIF (ji < 100 ) THEN ; WRITE (ctrbio(ji),'("BIO_",I2)') ji |
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| 200 | ELSE ; WRITE (ctrbio(ji),'("BIO_",I3)') ji |
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| 201 | ENDIF |
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| 202 | WRITE(ctrbil(ji),'("BIOLOGICAL TREND NUMBER ",I2)') ji ! long name |
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| 203 | ctrbiu(ji) = 'mmoleN/m3/s ' ! units |
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| 204 | END DO |
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| 205 | |
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| 206 | REWIND( numnat ) ! read natdbi |
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| 207 | READ ( numnat, natdbi ) |
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| 208 | |
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| 209 | IF(lwp) THEN |
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| 210 | WRITE(numout,*) |
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| 211 | WRITE(numout,*) ' Namelist natdbi' |
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| 212 | WRITE(numout,*) ' frequency of outputs for biological outputs nwritebio = ', nwritebio |
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| 213 | DO ji = 1, jpdiabio |
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| 214 | WRITE(numout,*) ' name of biological trend No :',ji,' : ',ctrbio(ji), ctrbil(ji), ' in ', ctrbiu(ji) |
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| 215 | END DO |
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| 216 | END IF |
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| 217 | #endif |
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| 218 | ! |
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| 219 | END SUBROUTINE trc_lsm_lobster |
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| 220 | |
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| 221 | #else |
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| 222 | !!---------------------------------------------------------------------- |
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| 223 | !! Dummy module : No LOBSTER |
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| 224 | !!---------------------------------------------------------------------- |
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| 225 | CONTAINS |
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| 226 | SUBROUTINE trc_lsm_lobster ! Empty routine |
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| 227 | END SUBROUTINE trc_lsm_lobster |
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| 228 | #endif |
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| 229 | |
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| 230 | !!====================================================================== |
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| 231 | END MODULE trclsm_lobster |
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