| 1 | !!---------------------------------------------------------------------- |
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| 2 | !! *** trclsm.pisces.h90 *** |
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| 3 | !! TOP : Definition some run parameter for PISCES biological model |
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| 4 | !!---------------------------------------------------------------------- |
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| 5 | !! History : - ! 1999-10 (M.A. Foujols, M. Levy) original code |
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| 6 | !! - ! 2000-01 (L. Bopp) hamocc3, p3zd |
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| 7 | !! 1.0 ! 2003-08 (C. Ethe) module F90 |
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| 8 | !!---------------------------------------------------------------------- |
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| 9 | |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | !! NEMO/TOP 1.0 , LOCEAN-IPSL (2005) |
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| 12 | !! $Id $ |
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| 13 | !! Software governed by the CeCILL licence (modipsl/doc/NEMO_CeCILL.txt) |
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| 14 | !!---------------------------------------------------------------------- |
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| 15 | |
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| 16 | CONTAINS |
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| 17 | |
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| 18 | SUBROUTINE trc_lsm |
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| 19 | !!---------------------------------------------------------------------- |
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| 20 | !! *** trc_lsm *** |
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| 21 | !! |
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| 22 | !! ** Purpose : read PISCES namelist |
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| 23 | !! |
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| 24 | !! ** input : file 'namelist.trc.sms' containing the following |
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| 25 | !! namelist: natext, natbio, natsms |
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| 26 | !! natkriest ("key_trc_kriest") |
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| 27 | !!---------------------------------------------------------------------- |
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| 28 | CHARACTER (len=32) :: clname |
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| 29 | !! |
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| 30 | NAMELIST/natext/ atcco2 |
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| 31 | NAMELIST/natbio/ caco3r, kdca, nca, part, & |
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| 32 | & dispo0,conc0,oxymin,grosip, nrdttrc, & |
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| 33 | & pislope, excret,wsbio,wchl,wchld,resrat,mprat,mzrat, & |
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| 34 | & grazrat,xprefc,xprefp,unass,xkgraz,xkmort,xksi1, & |
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| 35 | & xksi2,xremip,xremik,xsirem,xkdoc1,xkdoc2, & |
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| 36 | & excret2,resrat2,mprat2,mpratm,mzrat2,grazrat2, & |
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| 37 | & xprefz, xprefpoc, unass2, xkgraz2, xlam1, & |
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| 38 | & ferat3,conc1,conc2,conc3,concnnh4,concdnh4, & |
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| 39 | & nitrif,epsher,epsher2,pislope2,wsbio2,sigma1, & |
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| 40 | & sigma2, zprefc, zprefp, zprefd,fecnm,fecdm, & |
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| 41 | & chlcnm,chlcdm, sedfeinput |
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| 42 | NAMELIST/natsms/bdustfer, briver, bndepo, bsedinput |
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| 43 | #if defined key_trc_kriest |
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| 44 | NAMELIST/natkriest/ xkr_eta , xkr_zeta , xkr_sfact, xkr_mass_min, xkr_mass_max, & |
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| 45 | & xkr_dnano, xkr_ddiat, xkr_dmeso, xkr_daggr , xkr_stick |
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| 46 | #endif |
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| 47 | !!---------------------------------------------------------------------- |
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| 48 | |
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| 49 | |
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| 50 | IF(lwp) WRITE(numout,*) |
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| 51 | IF(lwp) WRITE(numout,*) ' trc_lsm : read PISCES namelists' |
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| 52 | IF(lwp) WRITE(numout,*) ' ~~~~~~~' |
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| 53 | |
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| 54 | |
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| 55 | ! ! Open the namelist file |
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| 56 | ! ! ---------------------- |
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| 57 | clname ='namelist.trc.sms' |
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| 58 | CALL ctlopn( numnat, clname, 'OLD', 'FORMATTED', 'SEQUENTIAL', & |
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| 59 | & 1, numout, .FALSE., 1 ) |
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| 60 | |
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| 61 | ! ! natext : Atmospheric parameters |
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| 62 | ! ! -------------------- ---------- |
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| 63 | REWIND( numnat ) ! read natext |
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| 64 | READ ( numnat, natext ) |
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| 65 | |
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| 66 | IF(lwp) THEN ! control print |
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| 67 | WRITE(numout,*) |
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| 68 | WRITE(numout,*) ' Namelist : natext' |
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| 69 | WRITE(numout,*) ' atmospheric pCO2 atcco2 = ',atcco2 |
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| 70 | ENDIF |
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| 71 | |
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| 72 | |
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| 73 | ! ! natbio : biological parameters |
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| 74 | ! ! ------------------------------ |
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| 75 | REWIND( numnat ) ! read natbio |
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| 76 | READ ( numnat, natbio ) |
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| 77 | |
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| 78 | IF(lwp) THEN ! control print |
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| 79 | WRITE(numout,*) ' Namelist : natbio' |
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| 80 | WRITE(numout,*) ' mean rainratio caco3r =', caco3r |
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| 81 | WRITE(numout,*) ' diss. rate constant calcite (per month) kdca =', kdca |
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| 82 | WRITE(numout,*) ' order of reaction for calcite dissolution nca =', nca |
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| 83 | WRITE(numout,*) ' part of calcite not dissolved in guts part =', part |
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| 84 | WRITE(numout,*) ' mean Si/C ratio grosip =', grosip |
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| 85 | WRITE(numout,*) ' Calcite dissolution half saturation dispo0 =', dispo0 |
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| 86 | WRITE(numout,*) ' Phosphate half saturation conc0 =', conc0 |
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| 87 | WRITE(numout,*) ' frequence pour la biologie nrdttrc =', nrdttrc |
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| 88 | WRITE(numout,*) ' P-I slope pislope =', pislope |
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| 89 | WRITE(numout,*) ' excretion ratio of phytoplankton excret =', excret |
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| 90 | WRITE(numout,*) ' POC sinking speed wsbio =', wsbio |
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| 91 | WRITE(numout,*) ' quadratic mortality of phytoplankton wchl =', wchl |
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| 92 | WRITE(numout,*) ' maximum quadratic mortality of diatoms wchld =', wchld |
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| 93 | WRITE(numout,*) ' exsudation rate of zooplankton resrat =', resrat |
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| 94 | WRITE(numout,*) ' phytoplankton mortality rate mprat =', mprat |
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| 95 | WRITE(numout,*) ' zooplankton mortality rate mzrat =', mzrat |
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| 96 | WRITE(numout,*) ' zoo preference for phyto xprefc =', xprefc |
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| 97 | WRITE(numout,*) ' zoo preference for POC xprefp =', xprefp |
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| 98 | WRITE(numout,*) ' maximal zoo grazing rate grazrat =', grazrat |
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| 99 | WRITE(numout,*) ' non assimilated fraction of phyto by zoo unass =', unass |
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| 100 | WRITE(numout,*) ' half sturation constant for grazing xkgraz =', xkgraz |
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| 101 | WRITE(numout,*) ' half saturation constant for mortality xkmort =', xkmort |
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| 102 | WRITE(numout,*) ' half saturation constant for Si uptake xksi1 =', xksi1 |
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| 103 | WRITE(numout,*) ' half saturation constant for Si/C xksi2 =', xksi2 |
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| 104 | WRITE(numout,*) ' remineralisation rate of POC xremip =', xremip |
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| 105 | WRITE(numout,*) ' remineralization rate of DOC xremik =', xremik |
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| 106 | WRITE(numout,*) ' remineralization rate of Si xsirem =', xsirem |
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| 107 | WRITE(numout,*) ' 1st half-sat. of DOC remineralization xkdoc1 =', xkdoc1 |
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| 108 | WRITE(numout,*) ' 2nd half-sat. of DOC remineralization xkdoc2 =', xkdoc2 |
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| 109 | WRITE(numout,*) ' excretion ratio of diatoms excret2 =', excret2 |
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| 110 | WRITE(numout,*) ' exsudation rate of mesozooplankton resrat2 =', resrat2 |
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| 111 | WRITE(numout,*) ' Diatoms mortality rate mprat2 =', mprat2 |
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| 112 | WRITE(numout,*) ' Phytoplankton minimum mortality rate mpratm =', mpratm |
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| 113 | WRITE(numout,*) ' mesozooplankton mortality rate mzrat2 =', mzrat2 |
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| 114 | WRITE(numout,*) ' zoo preference for zoo xprefz =', xprefz |
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| 115 | WRITE(numout,*) ' zoo preference for poc xprefpoc =', xprefpoc |
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| 116 | WRITE(numout,*) ' maximal mesozoo grazing rate grazrat2 =', grazrat2 |
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| 117 | WRITE(numout,*) ' non assimilated fraction of P by mesozoo unass2 =', unass2 |
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| 118 | WRITE(numout,*) ' Efficicency of Mesozoo growth epsher2 =', epsher2 |
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| 119 | WRITE(numout,*) ' Efficiency of microzoo growth epsher =', epsher |
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| 120 | WRITE(numout,*) ' half sturation constant for grazing 2 xkgraz2 =', xkgraz2 |
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| 121 | WRITE(numout,*) ' Maximum aggregation rate for diatoms wchld =', wchld |
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| 122 | WRITE(numout,*) ' scavenging rate of Iron xlam1 =', xlam1 |
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| 123 | WRITE(numout,*) ' Fe/C in zooplankton ferat3 =', ferat3 |
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| 124 | WRITE(numout,*) ' Phosphate half saturation for diatoms conc1 =', conc1 |
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| 125 | WRITE(numout,*) ' Iron half saturation for phyto conc2 =', conc2 |
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| 126 | WRITE(numout,*) ' Iron half saturation for diatoms conc3 =', conc3 |
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| 127 | WRITE(numout,*) ' NH4 half saturation for phyto concnnh4 =', concnnh4 |
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| 128 | WRITE(numout,*) ' NH4 half saturation for diatoms concdnh4 =', concdnh4 |
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| 129 | WRITE(numout,*) ' NH4 nitrification rate nitrif =', nitrif |
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| 130 | WRITE(numout,*) ' P-I slope for diatoms pislope2 =', pislope2 |
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| 131 | WRITE(numout,*) ' Big particles sinking speed wsbio2 =', wsbio2 |
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| 132 | WRITE(numout,*) ' Fraction of microzoo excretion as DOM sigma1 =', sigma1 |
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| 133 | WRITE(numout,*) ' Fraction of mesozoo excretion as DOM sigma2 =', sigma2 |
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| 134 | WRITE(numout,*) ' Microzoo preference for POM zprefc =', zprefc |
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| 135 | WRITE(numout,*) ' Microzoo preference for Nanophyto zprefp =', zprefp |
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| 136 | WRITE(numout,*) ' Microzoo preference for Diatoms zprefd =', zprefd |
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| 137 | WRITE(numout,*) ' Minimum Chl/C in nanophytoplankton chlcnm =', chlcnm |
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| 138 | WRITE(numout,*) ' Minimum Chl/C in diatoms chlcdm =', chlcdm |
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| 139 | WRITE(numout,*) ' Maximum Fe/C in nanophytoplankton fecnm =', fecnm |
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| 140 | WRITE(numout,*) ' Minimum Fe/C in diatoms fecdm =', fecdm |
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| 141 | WRITE(numout,*) ' Coastal release of Iron sedfeinput=', sedfeinput |
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| 142 | ENDIF |
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| 143 | |
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| 144 | ! ! natsms : SMS parameters |
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| 145 | ! ! ----------------------- |
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| 146 | REWIND( numnat ) ! read natsms |
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| 147 | READ ( numnat, natsms ) |
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| 148 | IF(lwp) THEN |
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| 149 | WRITE(numout,*) ' ' |
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| 150 | WRITE(numout,*) ' Namelist : natsms' |
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| 151 | WRITE(numout,*) ' Dust input from the atmosphere bdustfer = ', bdustfer |
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| 152 | WRITE(numout,*) ' River input of nutrients briver = ', briver |
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| 153 | WRITE(numout,*) ' Atmospheric deposition of N bndepo = ', bndepo |
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| 154 | WRITE(numout,*) ' Fe input from sediments bsedinput = ', bsedinput |
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| 155 | ENDIF |
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| 156 | |
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| 157 | #if defined key_trc_kriest |
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| 158 | |
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| 159 | ! ! natkriest : kriest parameters |
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| 160 | ! ! ----------------------------- |
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| 161 | REWIND( numnat ) ! read natkriest |
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| 162 | READ ( numnat, natkriest ) |
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| 163 | |
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| 164 | IF(lwp) THEN |
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| 165 | WRITE(numout,*) |
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| 166 | WRITE(numout,*) ' Namelist : natkriest' |
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| 167 | WRITE(numout,*) ' Sinking exponent xkr_eta = ', xkr_eta |
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| 168 | WRITE(numout,*) ' N content exponent xkr_zeta = ', xkr_zeta |
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| 169 | WRITE(numout,*) ' Sinking factor xkr_sfact = ', xkr_sfact |
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| 170 | WRITE(numout,*) ' Stickiness xkr_stick = ', xkr_stick |
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| 171 | WRITE(numout,*) ' Minimum mass for Aggregates xkr_mass_min = ', xkr_mass_min |
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| 172 | WRITE(numout,*) ' Maximum mass for Aggregates xkr_mass_max = ', xkr_mass_max |
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| 173 | WRITE(numout,*) ' Size of particles in nano pool xkr_dnano = ', xkr_dnano |
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| 174 | WRITE(numout,*) ' Size of particles in diatoms pool xkr_ddiat = ', xkr_ddiat |
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| 175 | WRITE(numout,*) ' Size of particles in mesozoo pool xkr_dmeso = ', xkr_dmeso |
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| 176 | WRITE(numout,*) ' Size of particles in aggregates pool xkr_daggr = ', xkr_daggr |
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| 177 | ENDIF |
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| 178 | |
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| 179 | |
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| 180 | ! Computation of some variables |
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| 181 | xkr_massp = 5.7E-6 * 7.6 * xkr_mass_min**xkr_zeta |
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| 182 | |
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| 183 | ! max and min vertical particle speed |
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| 184 | xkr_wsbio_min = xkr_sfact * xkr_mass_min**xkr_eta |
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| 185 | xkr_wsbio_max = xkr_sfact * xkr_mass_max**xkr_eta |
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| 186 | WRITE(numout,*) ' max and min vertical particle speed ', xkr_wsbio_min, xkr_wsbio_max |
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| 187 | |
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| 188 | ! |
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| 189 | ! effect of the sizes of the different living pools on particle numbers |
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| 190 | ! nano = 2um-20um -> mean size=6.32 um -> ws=2.596 -> xnum=xnnano=2.337 |
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| 191 | ! diat and microzoo = 10um-200um -> 44.7 -> 8.732 -> xnum=xndiat=3.718 |
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| 192 | ! mesozoo = 200um-2mm -> 632.45 -> 45.14 -> xnum=xnmeso=7.147 |
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| 193 | ! aggregates = 200um-10mm -> 1414 -> 74.34 -> xnum=xnaggr=9.877 |
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| 194 | ! doc aggregates = 1um |
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| 195 | ! ---------------------------------------------------------- |
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| 196 | |
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| 197 | xkr_nnano = 1. / ( xkr_massp * xkr_dnano ) |
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| 198 | xkr_ndiat = 1. / ( xkr_massp * xkr_ddiat ) |
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| 199 | xkr_nmeso = 1. / ( xkr_massp * xkr_dmeso ) |
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| 200 | xkr_naggr = 1. / ( xkr_massp * xkr_daggr ) |
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| 201 | |
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| 202 | #endif |
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| 203 | ! |
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| 204 | END SUBROUTINE trc_lsm |
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