[3443] | 1 | MODULE p4zsed |
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| 2 | !!====================================================================== |
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| 3 | !! *** MODULE p4sed *** |
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| 4 | !! TOP : PISCES Compute loss of organic matter in the sediments |
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| 5 | !!====================================================================== |
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| 6 | !! History : 1.0 ! 2004-03 (O. Aumont) Original code |
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| 7 | !! 2.0 ! 2007-12 (C. Ethe, G. Madec) F90 |
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| 8 | !! 3.4 ! 2011-06 (C. Ethe) USE of fldread |
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| 9 | !! 3.5 ! 2012-07 (O. Aumont) improvment of river input of nutrients |
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| 10 | !!---------------------------------------------------------------------- |
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| 11 | #if defined key_pisces |
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| 12 | !!---------------------------------------------------------------------- |
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| 13 | !! 'key_pisces' PISCES bio-model |
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| 14 | !!---------------------------------------------------------------------- |
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| 15 | !! p4z_sed : Compute loss of organic matter in the sediments |
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| 16 | !!---------------------------------------------------------------------- |
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| 17 | USE oce_trc ! shared variables between ocean and passive tracers |
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| 18 | USE trc ! passive tracers common variables |
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| 19 | USE sms_pisces ! PISCES Source Minus Sink variables |
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| 20 | USE p4zsink ! vertical flux of particulate matter due to sinking |
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| 21 | USE p4zopt ! optical model |
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| 22 | USE p4zlim ! Co-limitations of differents nutrients |
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| 23 | USE p4zsbc ! External source of nutrients |
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| 24 | USE p4zint ! interpolation and computation of various fields |
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| 25 | USE iom ! I/O manager |
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| 26 | USE prtctl_trc ! print control for debugging |
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| 27 | |
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| 28 | IMPLICIT NONE |
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| 29 | PRIVATE |
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| 30 | |
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[5385] | 31 | PUBLIC p4z_sed |
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| 32 | PUBLIC p4z_sed_alloc |
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| 33 | |
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| 34 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: nitrpot !: Nitrogen fixation |
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| 35 | REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,: ) :: sdenit !: Nitrate reduction in the sediments |
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[3443] | 36 | REAL(wp) :: r1_rday !: inverse of rday |
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| 37 | |
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| 38 | !!---------------------------------------------------------------------- |
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| 39 | !! NEMO/TOP 3.3 , NEMO Consortium (2010) |
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[5215] | 40 | !! $Id$ |
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[3443] | 41 | !! Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 42 | !!---------------------------------------------------------------------- |
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| 43 | CONTAINS |
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| 44 | |
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[5385] | 45 | SUBROUTINE p4z_sed( kt, knt ) |
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[3443] | 46 | !!--------------------------------------------------------------------- |
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| 47 | !! *** ROUTINE p4z_sed *** |
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| 48 | !! |
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| 49 | !! ** Purpose : Compute loss of organic matter in the sediments. This |
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| 50 | !! is by no way a sediment model. The loss is simply |
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| 51 | !! computed to balance the inout from rivers and dust |
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| 52 | !! |
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| 53 | !! ** Method : - ??? |
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| 54 | !!--------------------------------------------------------------------- |
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| 55 | ! |
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[5385] | 56 | INTEGER, INTENT(in) :: kt, knt ! ocean time step |
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[3443] | 57 | INTEGER :: ji, jj, jk, ikt |
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| 58 | #if ! defined key_sed |
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| 59 | REAL(wp) :: zsumsedsi, zsumsedpo4, zsumsedcal |
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| 60 | REAL(wp) :: zrivalk, zrivsil, zrivno3 |
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| 61 | #endif |
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| 62 | REAL(wp) :: zwflux, zfminus, zfplus |
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| 63 | REAL(wp) :: zlim, zfact, zfactcal |
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[4148] | 64 | REAL(wp) :: zo2, zno3, zflx, zpdenit, z1pdenit, zdenitt, zolimit |
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[4521] | 65 | REAL(wp) :: zsiloss, zcaloss, zws3, zws4, zwsc, zdep, zwstpoc |
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[4529] | 66 | REAL(wp) :: ztrfer, ztrpo4, zwdust, zlight |
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[3531] | 67 | ! |
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[3443] | 68 | CHARACTER (len=25) :: charout |
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[5385] | 69 | REAL(wp), POINTER, DIMENSION(:,: ) :: zpdep, zsidep, zwork1, zwork2, zwork3 |
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[4529] | 70 | REAL(wp), POINTER, DIMENSION(:,: ) :: zdenit2d, zironice, zbureff |
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[4521] | 71 | REAL(wp), POINTER, DIMENSION(:,: ) :: zwsbio3, zwsbio4, zwscal |
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[5385] | 72 | REAL(wp), POINTER, DIMENSION(:,:,:) :: zirondep, zsoufer |
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[3443] | 73 | !!--------------------------------------------------------------------- |
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| 74 | ! |
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| 75 | IF( nn_timing == 1 ) CALL timing_start('p4z_sed') |
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| 76 | ! |
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[5385] | 77 | IF( kt == nittrc000 .AND. knt == 1 ) r1_rday = 1. / rday |
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[3443] | 78 | ! |
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| 79 | ! Allocate temporary workspace |
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[5385] | 80 | CALL wrk_alloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, zbureff ) |
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[4521] | 81 | CALL wrk_alloc( jpi, jpj, zwsbio3, zwsbio4, zwscal ) |
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[5385] | 82 | CALL wrk_alloc( jpi, jpj, jpk, zsoufer ) |
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[4521] | 83 | |
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[3443] | 84 | zdenit2d(:,:) = 0.e0 |
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[4529] | 85 | zbureff (:,:) = 0.e0 |
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[4800] | 86 | zwork1 (:,:) = 0.e0 |
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| 87 | zwork2 (:,:) = 0.e0 |
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| 88 | zwork3 (:,:) = 0.e0 |
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[3443] | 89 | |
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| 90 | ! Iron input/uptake due to sea ice : Crude parameterization based on Lancelot et al. |
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| 91 | ! ---------------------------------------------------- |
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| 92 | IF( ln_ironice ) THEN |
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| 93 | ! |
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| 94 | CALL wrk_alloc( jpi, jpj, zironice ) |
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| 95 | ! |
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| 96 | DO jj = 1, jpj |
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| 97 | DO ji = 1, jpi |
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[6140] | 98 | zdep = rfact2 / e3t_n(ji,jj,1) |
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[4148] | 99 | zwflux = fmmflx(ji,jj) / 1000._wp |
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[5385] | 100 | zfminus = MIN( 0._wp, -zwflux ) * trb(ji,jj,1,jpfer) * zdep |
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[4148] | 101 | zfplus = MAX( 0._wp, -zwflux ) * icefeinput * zdep |
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[3443] | 102 | zironice(ji,jj) = zfplus + zfminus |
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| 103 | END DO |
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| 104 | END DO |
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| 105 | ! |
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[5385] | 106 | tra(:,:,1,jpfer) = tra(:,:,1,jpfer) + zironice(:,:) |
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[4996] | 107 | ! |
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[5385] | 108 | IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "Ironice" ) ) & |
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[6140] | 109 | & CALL iom_put( "Ironice", zironice(:,:) * 1.e+3 * rfact2r * e3t_n(:,:,1) * tmask(:,:,1) ) ! iron flux from ice |
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[4996] | 110 | ! |
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[3443] | 111 | CALL wrk_dealloc( jpi, jpj, zironice ) |
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| 112 | ! |
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| 113 | ENDIF |
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| 114 | |
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| 115 | ! Add the external input of nutrients from dust deposition |
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| 116 | ! ---------------------------------------------------------- |
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| 117 | IF( ln_dust ) THEN |
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| 118 | ! |
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| 119 | CALL wrk_alloc( jpi, jpj, zpdep, zsidep ) |
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| 120 | CALL wrk_alloc( jpi, jpj, jpk, zirondep ) |
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| 121 | ! ! Iron and Si deposition at the surface |
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| 122 | IF( ln_solub ) THEN |
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[6140] | 123 | zirondep(:,:,1) = solub(:,:) * dust(:,:) * mfrac * rfact2 / e3t_n(:,:,1) / 55.85 + 3.e-10 * r1_ryyss |
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[3443] | 124 | ELSE |
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[6140] | 125 | zirondep(:,:,1) = dustsolub * dust(:,:) * mfrac * rfact2 / e3t_n(:,:,1) / 55.85 + 3.e-10 * r1_ryyss |
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[3443] | 126 | ENDIF |
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[6140] | 127 | zsidep(:,:) = 8.8 * 0.075 * dust(:,:) * mfrac * rfact2 / e3t_n(:,:,1) / 28.1 |
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| 128 | zpdep (:,:) = 0.1 * 0.021 * dust(:,:) * mfrac * rfact2 / e3t_n(:,:,1) / 31. / po4r |
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[3443] | 129 | ! ! Iron solubilization of particles in the water column |
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[4529] | 130 | ! ! dust in kg/m2/s ---> 1/55.85 to put in mol/Fe ; wdust in m/j |
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| 131 | zwdust = 0.03 * rday / ( wdust * 55.85 ) / ( 270. * rday ) |
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[3443] | 132 | DO jk = 2, jpkm1 |
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[6140] | 133 | zirondep(:,:,jk) = dust(:,:) * mfrac * zwdust * rfact2 * EXP( -gdept_n(:,:,jk) / 540. ) |
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[3443] | 134 | END DO |
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| 135 | ! ! Iron solubilization of particles in the water column |
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[5385] | 136 | tra(:,:,1,jppo4) = tra(:,:,1,jppo4) + zpdep (:,:) |
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| 137 | tra(:,:,1,jpsil) = tra(:,:,1,jpsil) + zsidep (:,:) |
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| 138 | tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + zirondep(:,:,:) |
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[4996] | 139 | ! |
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| 140 | IF( lk_iomput ) THEN |
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[5385] | 141 | IF( knt == nrdttrc ) THEN |
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[4996] | 142 | IF( iom_use( "Irondep" ) ) & |
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[6140] | 143 | & CALL iom_put( "Irondep", zirondep(:,:,1) * 1.e+3 * rfact2r * e3t_n(:,:,1) * tmask(:,:,1) ) ! surface downward dust depo of iron |
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[4996] | 144 | IF( iom_use( "pdust" ) ) & |
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| 145 | & CALL iom_put( "pdust" , dust(:,:) / ( wdust * rday ) * tmask(:,:,1) ) ! dust concentration at surface |
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[3443] | 146 | ENDIF |
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[4996] | 147 | ELSE |
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| 148 | IF( ln_diatrc ) & |
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[6140] | 149 | & trc2d(:,:,jp_pcs0_2d + 11) = zirondep(:,:,1) * 1.e+3 * rfact2r * e3t_n(:,:,1) * tmask(:,:,1) |
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[3443] | 150 | ENDIF |
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| 151 | CALL wrk_dealloc( jpi, jpj, zpdep, zsidep ) |
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| 152 | CALL wrk_dealloc( jpi, jpj, jpk, zirondep ) |
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| 153 | ! |
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| 154 | ENDIF |
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| 155 | |
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| 156 | ! Add the external input of nutrients from river |
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| 157 | ! ---------------------------------------------------------- |
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| 158 | IF( ln_river ) THEN |
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[5385] | 159 | DO jj = 1, jpj |
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| 160 | DO ji = 1, jpi |
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| 161 | DO jk = 1, nk_rnf(ji,jj) |
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| 162 | tra(ji,jj,jk,jppo4) = tra(ji,jj,jk,jppo4) + rivdip(ji,jj) * rfact2 |
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| 163 | tra(ji,jj,jk,jpno3) = tra(ji,jj,jk,jpno3) + rivdin(ji,jj) * rfact2 |
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| 164 | tra(ji,jj,jk,jpfer) = tra(ji,jj,jk,jpfer) + rivdic(ji,jj) * 5.e-5 * rfact2 |
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| 165 | tra(ji,jj,jk,jpsil) = tra(ji,jj,jk,jpsil) + rivdsi(ji,jj) * rfact2 |
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| 166 | tra(ji,jj,jk,jpdic) = tra(ji,jj,jk,jpdic) + rivdic(ji,jj) * rfact2 |
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| 167 | tra(ji,jj,jk,jptal) = tra(ji,jj,jk,jptal) + ( rivalk(ji,jj) - rno3 * rivdin(ji,jj) ) * rfact2 |
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| 168 | ENDDO |
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| 169 | ENDDO |
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| 170 | ENDDO |
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[3443] | 171 | ENDIF |
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| 172 | |
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| 173 | ! Add the external input of nutrients from nitrogen deposition |
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| 174 | ! ---------------------------------------------------------- |
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| 175 | IF( ln_ndepo ) THEN |
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[5385] | 176 | tra(:,:,1,jpno3) = tra(:,:,1,jpno3) + nitdep(:,:) * rfact2 |
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| 177 | tra(:,:,1,jptal) = tra(:,:,1,jptal) - rno3 * nitdep(:,:) * rfact2 |
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[3443] | 178 | ENDIF |
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| 179 | |
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| 180 | ! Add the external input of iron from sediment mobilization |
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| 181 | ! ------------------------------------------------------ |
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| 182 | IF( ln_ironsed ) THEN |
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[5385] | 183 | tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + ironsed(:,:,:) * rfact2 |
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[3443] | 184 | ! |
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[5385] | 185 | IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "Ironsed" ) ) & |
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[3446] | 186 | & CALL iom_put( "Ironsed", ironsed(:,:,:) * 1.e+3 * tmask(:,:,:) ) ! iron inputs from sediments |
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[3443] | 187 | ENDIF |
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| 188 | |
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| 189 | ! Add the external input of iron from hydrothermal vents |
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| 190 | ! ------------------------------------------------------ |
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| 191 | IF( ln_hydrofe ) THEN |
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[5385] | 192 | tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + hydrofe(:,:,:) * rfact2 |
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[3443] | 193 | ! |
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[5385] | 194 | IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "HYDR" ) ) & |
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[3446] | 195 | & CALL iom_put( "HYDR", hydrofe(:,:,:) * 1.e+3 * tmask(:,:,:) ) ! hydrothermal iron input |
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[3443] | 196 | ENDIF |
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| 197 | |
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[4521] | 198 | ! OA: Warning, the following part is necessary, especially with Kriest |
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| 199 | ! to avoid CFL problems above the sediments |
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| 200 | ! -------------------------------------------------------------------- |
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| 201 | DO jj = 1, jpj |
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| 202 | DO ji = 1, jpi |
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| 203 | ikt = mbkt(ji,jj) |
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[6140] | 204 | zdep = e3t_n(ji,jj,ikt) / xstep |
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[4521] | 205 | zwsbio4(ji,jj) = MIN( 0.99 * zdep, wsbio4(ji,jj,ikt) ) |
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| 206 | zwscal (ji,jj) = MIN( 0.99 * zdep, wscal (ji,jj,ikt) ) |
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| 207 | zwsbio3(ji,jj) = MIN( 0.99 * zdep, wsbio3(ji,jj,ikt) ) |
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| 208 | END DO |
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| 209 | END DO |
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| 210 | |
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[3443] | 211 | #if ! defined key_sed |
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[3475] | 212 | ! Computation of the sediment denitrification proportion: The metamodel from midlleburg (2006) is being used |
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[4529] | 213 | ! Computation of the fraction of organic matter that is permanently buried from Dunne's model |
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[3443] | 214 | ! ------------------------------------------------------- |
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| 215 | DO jj = 1, jpj |
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| 216 | DO ji = 1, jpi |
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| 217 | IF( tmask(ji,jj,1) == 1 ) THEN |
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| 218 | ikt = mbkt(ji,jj) |
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| 219 | # if defined key_kriest |
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[5385] | 220 | zflx = trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) * 1E3 * 1E6 / 1E4 |
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[3443] | 221 | # else |
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[5385] | 222 | zflx = ( trb(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) & |
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| 223 | & + trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) ) * 1E3 * 1E6 / 1E4 |
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[3443] | 224 | #endif |
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| 225 | zflx = LOG10( MAX( 1E-3, zflx ) ) |
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[5385] | 226 | zo2 = LOG10( MAX( 10. , trb(ji,jj,ikt,jpoxy) * 1E6 ) ) |
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| 227 | zno3 = LOG10( MAX( 1. , trb(ji,jj,ikt,jpno3) * 1E6 * rno3 ) ) |
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[6140] | 228 | zdep = LOG10( gdepw_n(ji,jj,ikt+1) ) |
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[3443] | 229 | zdenit2d(ji,jj) = -2.2567 - 1.185 * zflx - 0.221 * zflx**2 - 0.3995 * zno3 * zo2 + 1.25 * zno3 & |
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| 230 | & + 0.4721 * zo2 - 0.0996 * zdep + 0.4256 * zflx * zo2 |
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| 231 | zdenit2d(ji,jj) = 10.0**( zdenit2d(ji,jj) ) |
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[4529] | 232 | ! |
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[5385] | 233 | zflx = ( trb(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) & |
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| 234 | & + trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) ) * 1E6 |
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[4529] | 235 | zbureff(ji,jj) = 0.013 + 0.53 * zflx**2 / ( 7.0 + zflx )**2 |
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[3443] | 236 | ENDIF |
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| 237 | END DO |
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| 238 | END DO |
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[4529] | 239 | |
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[3443] | 240 | ! Loss of biogenic silicon, Caco3 organic carbon in the sediments. |
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| 241 | ! First, the total loss is computed. |
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| 242 | ! The factor for calcite comes from the alkalinity effect |
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| 243 | ! ------------------------------------------------------------- |
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| 244 | DO jj = 1, jpj |
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| 245 | DO ji = 1, jpi |
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[4800] | 246 | IF( tmask(ji,jj,1) == 1 ) THEN |
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| 247 | ikt = mbkt(ji,jj) |
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[3443] | 248 | # if defined key_kriest |
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[5385] | 249 | zwork1(ji,jj) = trb(ji,jj,ikt,jpgsi) * zwscal (ji,jj) |
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| 250 | zwork2(ji,jj) = trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) |
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[3443] | 251 | # else |
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[5385] | 252 | zwork1(ji,jj) = trb(ji,jj,ikt,jpgsi) * zwsbio4(ji,jj) |
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| 253 | zwork2(ji,jj) = trb(ji,jj,ikt,jpgoc) * zwsbio4(ji,jj) + trb(ji,jj,ikt,jppoc) * zwsbio3(ji,jj) |
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[3443] | 254 | # endif |
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[4800] | 255 | ! For calcite, burial efficiency is made a function of saturation |
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| 256 | zfactcal = MIN( excess(ji,jj,ikt), 0.2 ) |
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| 257 | zfactcal = MIN( 1., 1.3 * ( 0.2 - zfactcal ) / ( 0.4 - zfactcal ) ) |
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[5385] | 258 | zwork3(ji,jj) = trb(ji,jj,ikt,jpcal) * zwscal(ji,jj) * 2.e0 * zfactcal |
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[4800] | 259 | ENDIF |
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[3443] | 260 | END DO |
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| 261 | END DO |
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| 262 | zsumsedsi = glob_sum( zwork1(:,:) * e1e2t(:,:) ) * r1_rday |
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| 263 | zsumsedpo4 = glob_sum( zwork2(:,:) * e1e2t(:,:) ) * r1_rday |
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| 264 | zsumsedcal = glob_sum( zwork3(:,:) * e1e2t(:,:) ) * r1_rday |
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| 265 | #endif |
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| 266 | |
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[4148] | 267 | ! This loss is scaled at each bottom grid cell for equilibrating the total budget of silica in the ocean. |
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| 268 | ! Thus, the amount of silica lost in the sediments equal the supply at the surface (dust+rivers) |
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[3443] | 269 | ! ------------------------------------------------------ |
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| 270 | #if ! defined key_sed |
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[4641] | 271 | zrivsil = 1._wp - ( sumdepsi + rivdsiinput * r1_ryyss ) / ( zsumsedsi + rtrn ) |
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[3443] | 272 | #endif |
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| 273 | |
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| 274 | DO jj = 1, jpj |
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| 275 | DO ji = 1, jpi |
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| 276 | ikt = mbkt(ji,jj) |
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[6140] | 277 | zdep = xstep / e3t_n(ji,jj,ikt) |
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[4521] | 278 | zws4 = zwsbio4(ji,jj) * zdep |
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| 279 | zwsc = zwscal (ji,jj) * zdep |
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[3443] | 280 | # if defined key_kriest |
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[5385] | 281 | zsiloss = trb(ji,jj,ikt,jpgsi) * zws4 |
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[3443] | 282 | # else |
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[5385] | 283 | zsiloss = trb(ji,jj,ikt,jpgsi) * zwsc |
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[3443] | 284 | # endif |
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[5385] | 285 | zcaloss = trb(ji,jj,ikt,jpcal) * zwsc |
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[3443] | 286 | ! |
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[5385] | 287 | tra(ji,jj,ikt,jpgsi) = tra(ji,jj,ikt,jpgsi) - zsiloss |
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| 288 | tra(ji,jj,ikt,jpcal) = tra(ji,jj,ikt,jpcal) - zcaloss |
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[3443] | 289 | #if ! defined key_sed |
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[5385] | 290 | tra(ji,jj,ikt,jpsil) = tra(ji,jj,ikt,jpsil) + zsiloss * zrivsil |
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[3443] | 291 | zfactcal = MIN( excess(ji,jj,ikt), 0.2 ) |
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| 292 | zfactcal = MIN( 1., 1.3 * ( 0.2 - zfactcal ) / ( 0.4 - zfactcal ) ) |
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[4641] | 293 | zrivalk = 1._wp - ( rivalkinput * r1_ryyss ) * zfactcal / ( zsumsedcal + rtrn ) |
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[5385] | 294 | tra(ji,jj,ikt,jptal) = tra(ji,jj,ikt,jptal) + zcaloss * zrivalk * 2.0 |
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| 295 | tra(ji,jj,ikt,jpdic) = tra(ji,jj,ikt,jpdic) + zcaloss * zrivalk |
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[3443] | 296 | #endif |
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| 297 | END DO |
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| 298 | END DO |
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| 299 | |
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| 300 | DO jj = 1, jpj |
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| 301 | DO ji = 1, jpi |
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[5385] | 302 | ikt = mbkt(ji,jj) |
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[6140] | 303 | zdep = xstep / e3t_n(ji,jj,ikt) |
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[4521] | 304 | zws4 = zwsbio4(ji,jj) * zdep |
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| 305 | zws3 = zwsbio3(ji,jj) * zdep |
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[4529] | 306 | zrivno3 = 1. - zbureff(ji,jj) |
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[3443] | 307 | # if ! defined key_kriest |
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[5385] | 308 | tra(ji,jj,ikt,jpgoc) = tra(ji,jj,ikt,jpgoc) - trb(ji,jj,ikt,jpgoc) * zws4 |
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| 309 | tra(ji,jj,ikt,jppoc) = tra(ji,jj,ikt,jppoc) - trb(ji,jj,ikt,jppoc) * zws3 |
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| 310 | tra(ji,jj,ikt,jpbfe) = tra(ji,jj,ikt,jpbfe) - trb(ji,jj,ikt,jpbfe) * zws4 |
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| 311 | tra(ji,jj,ikt,jpsfe) = tra(ji,jj,ikt,jpsfe) - trb(ji,jj,ikt,jpsfe) * zws3 |
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| 312 | zwstpoc = trb(ji,jj,ikt,jpgoc) * zws4 + trb(ji,jj,ikt,jppoc) * zws3 |
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[3443] | 313 | # else |
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[5385] | 314 | tra(ji,jj,ikt,jpnum) = tra(ji,jj,ikt,jpnum) - trb(ji,jj,ikt,jpnum) * zws4 |
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| 315 | tra(ji,jj,ikt,jppoc) = tra(ji,jj,ikt,jppoc) - trb(ji,jj,ikt,jppoc) * zws3 |
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| 316 | tra(ji,jj,ikt,jpsfe) = tra(ji,jj,ikt,jpsfe) - trb(ji,jj,ikt,jpsfe) * zws3 |
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| 317 | zwstpoc = trb(ji,jj,ikt,jppoc) * zws3 |
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[3443] | 318 | # endif |
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| 319 | |
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| 320 | #if ! defined key_sed |
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[4148] | 321 | ! The 0.5 factor in zpdenit and zdenitt is to avoid negative NO3 concentration after both denitrification |
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| 322 | ! in the sediments and just above the sediments. Not very clever, but simpliest option. |
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[5385] | 323 | zpdenit = MIN( 0.5 * ( trb(ji,jj,ikt,jpno3) - rtrn ) / rdenit, zdenit2d(ji,jj) * zwstpoc * zrivno3 ) |
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[3443] | 324 | z1pdenit = zwstpoc * zrivno3 - zpdenit |
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[5385] | 325 | zolimit = MIN( ( trb(ji,jj,ikt,jpoxy) - rtrn ) / o2ut, z1pdenit * ( 1.- nitrfac(ji,jj,ikt) ) ) |
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| 326 | zdenitt = MIN( 0.5 * ( trb(ji,jj,ikt,jpno3) - rtrn ) / rdenit, z1pdenit * nitrfac(ji,jj,ikt) ) |
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| 327 | tra(ji,jj,ikt,jpdoc) = tra(ji,jj,ikt,jpdoc) + z1pdenit - zolimit - zdenitt |
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| 328 | tra(ji,jj,ikt,jppo4) = tra(ji,jj,ikt,jppo4) + zpdenit + zolimit + zdenitt |
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| 329 | tra(ji,jj,ikt,jpnh4) = tra(ji,jj,ikt,jpnh4) + zpdenit + zolimit + zdenitt |
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| 330 | tra(ji,jj,ikt,jpno3) = tra(ji,jj,ikt,jpno3) - rdenit * (zpdenit + zdenitt) |
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| 331 | tra(ji,jj,ikt,jpoxy) = tra(ji,jj,ikt,jpoxy) - zolimit * o2ut |
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| 332 | tra(ji,jj,ikt,jptal) = tra(ji,jj,ikt,jptal) + rno3 * (zolimit + (1.+rdenit) * (zpdenit + zdenitt) ) |
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| 333 | tra(ji,jj,ikt,jpdic) = tra(ji,jj,ikt,jpdic) + zpdenit + zolimit + zdenitt |
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[6140] | 334 | sdenit(ji,jj) = rdenit * zpdenit * e3t_n(ji,jj,ikt) |
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[3443] | 335 | #endif |
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| 336 | END DO |
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| 337 | END DO |
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| 338 | |
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| 339 | ! Nitrogen fixation process |
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[4529] | 340 | ! Small source iron from particulate inorganic iron |
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[3443] | 341 | !----------------------------------- |
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| 342 | DO jk = 1, jpkm1 |
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| 343 | DO jj = 1, jpj |
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| 344 | DO ji = 1, jpi |
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[4529] | 345 | ! ! Potential nitrogen fixation dependant on temperature and iron |
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[3443] | 346 | zlim = ( 1.- xnanono3(ji,jj,jk) - xnanonh4(ji,jj,jk) ) |
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| 347 | IF( zlim <= 0.2 ) zlim = 0.01 |
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| 348 | #if defined key_degrad |
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| 349 | zfact = zlim * rfact2 * facvol(ji,jj,jk) |
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| 350 | #else |
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| 351 | zfact = zlim * rfact2 |
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| 352 | #endif |
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[3446] | 353 | ztrfer = biron(ji,jj,jk) / ( concfediaz + biron(ji,jj,jk) ) |
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[5385] | 354 | ztrpo4 = trb (ji,jj,jk,jppo4) / ( concnnh4 + trb (ji,jj,jk,jppo4) ) |
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| 355 | zlight = ( 1.- EXP( -etot_ndcy(ji,jj,jk) / diazolight ) ) |
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| 356 | nitrpot(ji,jj,jk) = MAX( 0.e0, ( 0.6 * tgfunc(ji,jj,jk) - 2.15 ) * r1_rday ) & |
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[4529] | 357 | & * zfact * MIN( ztrfer, ztrpo4 ) * zlight |
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| 358 | zsoufer(ji,jj,jk) = zlight * 2E-11 / (2E-11 + biron(ji,jj,jk)) |
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[3443] | 359 | END DO |
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| 360 | END DO |
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| 361 | END DO |
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[3496] | 362 | |
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[3443] | 363 | ! Nitrogen change due to nitrogen fixation |
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| 364 | ! ---------------------------------------- |
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| 365 | DO jk = 1, jpkm1 |
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| 366 | DO jj = 1, jpj |
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| 367 | DO ji = 1, jpi |
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[5385] | 368 | zfact = nitrpot(ji,jj,jk) * nitrfix |
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| 369 | tra(ji,jj,jk,jpnh4) = tra(ji,jj,jk,jpnh4) + zfact |
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| 370 | tra(ji,jj,jk,jptal) = tra(ji,jj,jk,jptal) + rno3 * zfact |
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| 371 | tra(ji,jj,jk,jpoxy) = tra(ji,jj,jk,jpoxy) + o2nit * zfact |
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| 372 | tra(ji,jj,jk,jppo4) = tra(ji,jj,jk,jppo4) + concdnh4 / ( concdnh4 + trb(ji,jj,jk,jppo4) ) & |
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| 373 | & * 0.002 * trb(ji,jj,jk,jpdoc) * xstep |
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| 374 | tra(ji,jj,jk,jpfer) = tra(ji,jj,jk,jpfer) + 0.002 * 4E-10 * zsoufer(ji,jj,jk) * xstep |
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[3443] | 375 | END DO |
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| 376 | END DO |
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| 377 | END DO |
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[4529] | 378 | |
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[4996] | 379 | IF( lk_iomput ) THEN |
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[5385] | 380 | IF( knt == nrdttrc ) THEN |
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[4996] | 381 | zfact = 1.e+3 * rfact2r * rno3 ! conversion from molC/l/kt to molN/m3/s |
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[5385] | 382 | IF( iom_use("Nfix" ) ) CALL iom_put( "Nfix", nitrpot(:,:,:) * nitrfix * zfact * tmask(:,:,:) ) ! nitrogen fixation |
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[4996] | 383 | IF( iom_use("INTNFIX") ) THEN ! nitrogen fixation rate in ocean ( vertically integrated ) |
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| 384 | zwork1(:,:) = 0. |
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| 385 | DO jk = 1, jpkm1 |
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[6140] | 386 | zwork1(:,:) = zwork1(:,:) + nitrpot(:,:,jk) * nitrfix * zfact * e3t_n(:,:,jk) * tmask(:,:,jk) |
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[4996] | 387 | ENDDO |
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| 388 | CALL iom_put( "INTNFIX" , zwork1 ) |
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[3751] | 389 | ENDIF |
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[3443] | 390 | ENDIF |
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[4996] | 391 | ELSE |
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| 392 | IF( ln_diatrc ) & |
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[6140] | 393 | & trc2d(:,:,jp_pcs0_2d + 12) = nitrpot(:,:,1) * nitrfix * rno3 * 1.e+3 * rfact2r * e3t_n(:,:,1) * tmask(:,:,1) |
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[3443] | 394 | ENDIF |
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| 395 | ! |
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| 396 | IF(ln_ctl) THEN ! print mean trends (USEd for debugging) |
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| 397 | WRITE(charout, fmt="('sed ')") |
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| 398 | CALL prt_ctl_trc_info(charout) |
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[5385] | 399 | CALL prt_ctl_trc(tab4d=tra, mask=tmask, clinfo=ctrcnm) |
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[3443] | 400 | ENDIF |
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| 401 | ! |
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[5385] | 402 | CALL wrk_dealloc( jpi, jpj, zdenit2d, zwork1, zwork2, zwork3, zbureff ) |
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[4521] | 403 | CALL wrk_dealloc( jpi, jpj, zwsbio3, zwsbio4, zwscal ) |
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[5385] | 404 | CALL wrk_dealloc( jpi, jpj, jpk, zsoufer ) |
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[3443] | 405 | ! |
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| 406 | IF( nn_timing == 1 ) CALL timing_stop('p4z_sed') |
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| 407 | ! |
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[3496] | 408 | 9100 FORMAT(i8,3f10.5) |
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| 409 | ! |
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[3443] | 410 | END SUBROUTINE p4z_sed |
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| 411 | |
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[5385] | 412 | |
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| 413 | INTEGER FUNCTION p4z_sed_alloc() |
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| 414 | !!---------------------------------------------------------------------- |
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| 415 | !! *** ROUTINE p4z_sed_alloc *** |
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| 416 | !!---------------------------------------------------------------------- |
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| 417 | ALLOCATE( nitrpot(jpi,jpj,jpk), sdenit(jpi,jpj), STAT=p4z_sed_alloc ) |
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| 418 | ! |
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| 419 | IF( p4z_sed_alloc /= 0 ) CALL ctl_warn('p4z_sed_alloc: failed to allocate arrays') |
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| 420 | ! |
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| 421 | END FUNCTION p4z_sed_alloc |
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| 422 | |
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| 423 | |
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[3443] | 424 | #else |
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| 425 | !!====================================================================== |
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| 426 | !! Dummy module : No PISCES bio-model |
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| 427 | !!====================================================================== |
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| 428 | CONTAINS |
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| 429 | SUBROUTINE p4z_sed ! Empty routine |
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| 430 | END SUBROUTINE p4z_sed |
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| 431 | #endif |
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| 432 | |
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| 433 | !!====================================================================== |
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[5656] | 434 | END MODULE p4zsed |
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