[2354] | 1 | ###################################################### |
---|
| 2 | # Author : Simona Flavoni for NEMO |
---|
| 3 | # Contact : sflod@locean-ipsl.upmc.fr |
---|
| 4 | # |
---|
[2359] | 5 | # Some scripts called by sette.sh |
---|
| 6 | # fcm_job.sh : simple job to run NEMO with fcm |
---|
[2354] | 7 | ###################################################### |
---|
| 8 | #set -x |
---|
| 9 | set -o posix |
---|
| 10 | #set -u |
---|
| 11 | #set -e |
---|
| 12 | #+ |
---|
| 13 | # |
---|
| 14 | # ================ |
---|
| 15 | # fcm_job.sh |
---|
| 16 | # ================ |
---|
| 17 | # |
---|
| 18 | # -------------------------- |
---|
| 19 | # Simple job for NEMO tests |
---|
| 20 | # -------------------------- |
---|
| 21 | # |
---|
| 22 | # SYNOPSIS |
---|
| 23 | # ======== |
---|
| 24 | # |
---|
| 25 | # :: |
---|
| 26 | # |
---|
| 27 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
---|
| 28 | # |
---|
| 29 | # |
---|
| 30 | # DESCRIPTION |
---|
| 31 | # =========== |
---|
| 32 | # |
---|
| 33 | # |
---|
| 34 | # Simple job for SET TESTS for NEMO (SETTE) |
---|
| 35 | # |
---|
| 36 | # |
---|
| 37 | # EXAMPLES |
---|
| 38 | # ======== |
---|
| 39 | # |
---|
| 40 | # :: |
---|
| 41 | # |
---|
[2507] | 42 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
---|
[2354] | 43 | # |
---|
[2507] | 44 | # run a job of config GYRE with 1 processor |
---|
| 45 | # $ ./fcm_job.sh input_GYRE.cfg 1 |
---|
[2354] | 46 | # |
---|
[2507] | 47 | # run a job of config ORCA2_LIM_PISCES with 8 processors |
---|
| 48 | # $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 |
---|
| 49 | # |
---|
| 50 | # |
---|
[2354] | 51 | # TODO |
---|
| 52 | # ==== |
---|
| 53 | # |
---|
| 54 | # option debug |
---|
| 55 | # |
---|
| 56 | # |
---|
| 57 | # EVOLUTIONS |
---|
| 58 | # ========== |
---|
| 59 | # |
---|
[2507] | 60 | # $Id$ |
---|
[2354] | 61 | # |
---|
| 62 | # |
---|
| 63 | # |
---|
| 64 | # * creation |
---|
| 65 | # |
---|
| 66 | #- |
---|
| 67 | # |
---|
[2545] | 68 | |
---|
| 69 | usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg NUMBER_OF_PROCS" |
---|
| 70 | usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8" |
---|
| 71 | |
---|
| 72 | |
---|
| 73 | minargcount=2 |
---|
| 74 | if [ ${#} -lt ${minargcount} ] |
---|
| 75 | then |
---|
| 76 | echo "not enought arguments for fcm_job.sh script" |
---|
| 77 | echo "control number of argument of fcm_job.sh in sette.sh" |
---|
| 78 | echo "${usage}" |
---|
| 79 | exit 1 |
---|
| 80 | fi |
---|
| 81 | unset minargcount |
---|
| 82 | if [ -f ${SETTE_DIR}/output.sette ] ; then |
---|
| 83 | echo "file output already present. Append comments" |
---|
| 84 | echo "`ls ${SETTE_DIR}/output.sette`" |
---|
| 85 | else |
---|
| 86 | echo "file output not present" |
---|
| 87 | touch ${SETTE_DIR}/output.sette |
---|
| 88 | echo "`ls ${SETTE_DIR}/output.sette`" |
---|
| 89 | fi |
---|
| 90 | echo "executing script : fcm_job $@" >> ${SETTE_DIR}/output.sette |
---|
| 91 | echo " " >> ${SETTE_DIR}/output.sette |
---|
| 92 | |
---|
[2354] | 93 | # SET INPUT |
---|
[2507] | 94 | # get the input tarfile if needed |
---|
[2354] | 95 | tar_file=$(sed -ne "1,1p" $1) |
---|
| 96 | if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then |
---|
[2545] | 97 | echo "looking for tar file" >> ${SETTE_DIR}/output.sette |
---|
| 98 | echo " " >> ${SETTE_DIR}/output.sette |
---|
[2354] | 99 | cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. |
---|
[2494] | 100 | cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz |
---|
[2354] | 101 | fi |
---|
| 102 | |
---|
| 103 | if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then |
---|
[2545] | 104 | echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette |
---|
| 105 | echo " " >> ${SETTE_DIR}/output.sette |
---|
[2354] | 106 | cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice |
---|
| 107 | elif [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then |
---|
| 108 | cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice |
---|
| 109 | fi |
---|
| 110 | |
---|
| 111 | |
---|
| 112 | if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then |
---|
| 113 | #- Namelist for ocean and ice (agrif fine grid) |
---|
[2545] | 114 | echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette |
---|
| 115 | echo " " >> ${SETTE_DIR}/output.sette |
---|
[2354] | 116 | cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice |
---|
| 117 | fi |
---|
| 118 | ################################################################ |
---|
| 119 | |
---|
| 120 | ################################################################ |
---|
| 121 | # RUN OPA |
---|
| 122 | cd ${INPUT_DIR} |
---|
| 123 | NB_PROC=$2 |
---|
| 124 | if [ ${NB_PROC} == 1 ] ; then |
---|
[2545] | 125 | opa_command='./opa' # !! to test if executable is created |
---|
| 126 | type ${opa_command} |
---|
| 127 | status_type=${?} |
---|
| 128 | if [ ${status_type} -ne 0 ] |
---|
| 129 | then |
---|
| 130 | echo "opa not found" |
---|
| 131 | exit 1 |
---|
| 132 | fi |
---|
| 133 | echo "running opa" >> ${SETTE_DIR}/output.sette |
---|
| 134 | echo " " >> ${SETTE_DIR}/output.sette |
---|
[2354] | 135 | ./opa |
---|
| 136 | else |
---|
[2545] | 137 | opa_command='mpirun' # !! to test if executable is created |
---|
| 138 | type ${opa_command} |
---|
| 139 | status_type=${?} |
---|
| 140 | if [ ${status_type} -ne 0 ] |
---|
| 141 | then |
---|
| 142 | echo "mpi opa not found" |
---|
| 143 | exit 1 |
---|
| 144 | fi |
---|
[2494] | 145 | # example for brodie (NEC SX8) machine |
---|
[2545] | 146 | echo "running opa in MPI" >> ${SETTE_DIR}/output.sette |
---|
| 147 | echo " " >> ${SETTE_DIR}/output.sette |
---|
[2354] | 148 | mpirun -np ${NB_PROC} opa |
---|
| 149 | # example for dedale machine |
---|
| 150 | # mpirun --mca btl self,tcp -np ${NB_PROC} opa |
---|
[2494] | 151 | # example for vargas (IBM Power6) machine |
---|
[2354] | 152 | # mpiexec -n ${NB_PROC} opa |
---|
| 153 | fi |
---|
| 154 | ################################################################ |
---|
| 155 | |
---|
| 156 | ################################################################ |
---|
| 157 | ## -- Save output files |
---|
| 158 | |
---|
| 159 | #- Save ocean output files |
---|
[2545] | 160 | echo "saving ocean & ice output, debug & restarts files" >> ${SETTE_DIR}/output.sette |
---|
| 161 | echo " " >> ${SETTE_DIR}/output.sette |
---|
[2354] | 162 | [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR} |
---|
| 163 | [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/. |
---|
| 164 | [ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/. |
---|
| 165 | [ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/. |
---|
| 166 | [ -f restart* ] && cp restart* ${OUTPUT_DIR}/. |
---|
| 167 | [ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/. |
---|
| 168 | [ -n "$(ls *icemod*)" ] && mv *icemod* ${OUTPUT_DIR}/. |
---|
| 169 | #- Save ftrace file |
---|
| 170 | [ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/. |
---|
| 171 | ################################################################ |
---|
| 172 | |
---|