[2354] | 1 | ###################################################### |
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| 2 | # Author : Simona Flavoni for NEMO |
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| 3 | # Contact : sflod@locean-ipsl.upmc.fr |
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| 4 | # |
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[2546] | 5 | # ---------------------------------------------------------------------- |
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| 6 | # NEMO/SETTE , NEMO Consortium (2010) |
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| 7 | # Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt) |
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| 8 | # ---------------------------------------------------------------------- |
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| 9 | # |
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[2359] | 10 | # Some scripts called by sette.sh |
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| 11 | # fcm_job.sh : simple job to run NEMO with fcm |
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[2354] | 12 | ###################################################### |
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| 13 | #set -x |
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| 14 | set -o posix |
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| 15 | #set -u |
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| 16 | #set -e |
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| 17 | #+ |
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| 18 | # |
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| 19 | # ================ |
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| 20 | # fcm_job.sh |
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| 21 | # ================ |
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| 22 | # |
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| 23 | # -------------------------- |
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| 24 | # Simple job for NEMO tests |
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| 25 | # -------------------------- |
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| 26 | # |
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| 27 | # SYNOPSIS |
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| 28 | # ======== |
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| 29 | # |
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| 30 | # :: |
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| 31 | # |
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| 32 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
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| 33 | # |
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| 34 | # |
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| 35 | # DESCRIPTION |
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| 36 | # =========== |
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| 37 | # |
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| 38 | # |
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| 39 | # Simple job for SET TESTS for NEMO (SETTE) |
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| 40 | # |
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| 41 | # |
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| 42 | # EXAMPLES |
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| 43 | # ======== |
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| 44 | # |
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| 45 | # :: |
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| 46 | # |
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[2507] | 47 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
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[2354] | 48 | # |
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[2507] | 49 | # run a job of config GYRE with 1 processor |
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| 50 | # $ ./fcm_job.sh input_GYRE.cfg 1 |
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[2354] | 51 | # |
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[2507] | 52 | # run a job of config ORCA2_LIM_PISCES with 8 processors |
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| 53 | # $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 |
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| 54 | # |
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| 55 | # |
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[2354] | 56 | # TODO |
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| 57 | # ==== |
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| 58 | # |
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| 59 | # option debug |
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| 60 | # |
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| 61 | # |
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| 62 | # EVOLUTIONS |
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| 63 | # ========== |
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| 64 | # |
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[2507] | 65 | # $Id$ |
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[2354] | 66 | # |
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| 67 | # |
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| 68 | # |
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| 69 | # * creation |
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| 70 | # |
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| 71 | #- |
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| 72 | # |
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[2545] | 73 | |
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| 74 | usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg NUMBER_OF_PROCS" |
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| 75 | usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8" |
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| 76 | |
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| 77 | |
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| 78 | minargcount=2 |
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| 79 | if [ ${#} -lt ${minargcount} ] |
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| 80 | then |
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| 81 | echo "not enought arguments for fcm_job.sh script" |
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| 82 | echo "control number of argument of fcm_job.sh in sette.sh" |
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| 83 | echo "${usage}" |
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| 84 | exit 1 |
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| 85 | fi |
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| 86 | unset minargcount |
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| 87 | if [ -f ${SETTE_DIR}/output.sette ] ; then |
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| 88 | echo "file output already present. Append comments" |
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| 89 | echo "`ls ${SETTE_DIR}/output.sette`" |
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| 90 | else |
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| 91 | echo "file output not present" |
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| 92 | touch ${SETTE_DIR}/output.sette |
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| 93 | echo "`ls ${SETTE_DIR}/output.sette`" |
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| 94 | fi |
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| 95 | echo "executing script : fcm_job $@" >> ${SETTE_DIR}/output.sette |
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| 96 | echo " " >> ${SETTE_DIR}/output.sette |
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| 97 | |
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[2354] | 98 | # SET INPUT |
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[2507] | 99 | # get the input tarfile if needed |
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[2354] | 100 | tar_file=$(sed -ne "1,1p" $1) |
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| 101 | if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then |
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[2545] | 102 | echo "looking for tar file" >> ${SETTE_DIR}/output.sette |
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| 103 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 104 | cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. |
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[2494] | 105 | cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz |
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[2354] | 106 | fi |
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| 107 | |
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| 108 | if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then |
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[2545] | 109 | echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette |
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| 110 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 111 | cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice |
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| 112 | elif [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then |
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| 113 | cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice |
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| 114 | fi |
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| 115 | |
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| 116 | |
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| 117 | if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then |
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| 118 | #- Namelist for ocean and ice (agrif fine grid) |
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[2545] | 119 | echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette |
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| 120 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 121 | cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice |
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| 122 | fi |
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| 123 | ################################################################ |
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| 124 | |
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| 125 | ################################################################ |
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| 126 | # RUN OPA |
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| 127 | cd ${INPUT_DIR} |
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| 128 | NB_PROC=$2 |
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[2546] | 129 | if [! -r ${INPUT_DIR}/opa ] |
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| 130 | then |
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| 131 | echo "executable opa does not exist" |
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| 132 | exit 1 |
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| 133 | fi |
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| 134 | if [ ${NB_PROC} == 1 ] ; then |
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[2545] | 135 | opa_command='./opa' # !! to test if executable is created |
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| 136 | type ${opa_command} |
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| 137 | status_type=${?} |
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| 138 | if [ ${status_type} -ne 0 ] |
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| 139 | then |
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| 140 | echo "opa not found" |
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| 141 | exit 1 |
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| 142 | fi |
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| 143 | echo "running opa" >> ${SETTE_DIR}/output.sette |
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| 144 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 145 | ./opa |
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| 146 | else |
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[2545] | 147 | opa_command='mpirun' # !! to test if executable is created |
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| 148 | type ${opa_command} |
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| 149 | status_type=${?} |
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| 150 | if [ ${status_type} -ne 0 ] |
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| 151 | then |
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| 152 | echo "mpi opa not found" |
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| 153 | exit 1 |
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| 154 | fi |
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[2494] | 155 | # example for brodie (NEC SX8) machine |
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[2545] | 156 | echo "running opa in MPI" >> ${SETTE_DIR}/output.sette |
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| 157 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 158 | mpirun -np ${NB_PROC} opa |
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| 159 | # example for dedale machine |
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| 160 | # mpirun --mca btl self,tcp -np ${NB_PROC} opa |
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[2494] | 161 | # example for vargas (IBM Power6) machine |
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[2354] | 162 | # mpiexec -n ${NB_PROC} opa |
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| 163 | fi |
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| 164 | ################################################################ |
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| 165 | |
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| 166 | ################################################################ |
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| 167 | ## -- Save output files |
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| 168 | |
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| 169 | #- Save ocean output files |
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[2545] | 170 | echo "saving ocean & ice output, debug & restarts files" >> ${SETTE_DIR}/output.sette |
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| 171 | echo " " >> ${SETTE_DIR}/output.sette |
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[2354] | 172 | [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR} |
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| 173 | [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/. |
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| 174 | [ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/. |
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| 175 | [ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/. |
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| 176 | [ -f restart* ] && cp restart* ${OUTPUT_DIR}/. |
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| 177 | [ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/. |
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| 178 | [ -n "$(ls *icemod*)" ] && mv *icemod* ${OUTPUT_DIR}/. |
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| 179 | #- Save ftrace file |
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| 180 | [ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/. |
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| 181 | ################################################################ |
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| 182 | |
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