1 | ###################################################### |
---|
2 | # Author : Simona Flavoni for NEMO |
---|
3 | # Contact : sflod@locean-ipsl.upmc.fr |
---|
4 | # |
---|
5 | # Some scripts called by sette.sh |
---|
6 | # fcm_job.sh : simple job to run NEMO with fcm |
---|
7 | ###################################################### |
---|
8 | #set -x |
---|
9 | set -o posix |
---|
10 | #set -u |
---|
11 | #set -e |
---|
12 | #+ |
---|
13 | # |
---|
14 | # ================ |
---|
15 | # fcm_job.sh |
---|
16 | # ================ |
---|
17 | # |
---|
18 | # -------------------------- |
---|
19 | # Simple job for NEMO tests |
---|
20 | # -------------------------- |
---|
21 | # |
---|
22 | # SYNOPSIS |
---|
23 | # ======== |
---|
24 | # |
---|
25 | # :: |
---|
26 | # |
---|
27 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
---|
28 | # |
---|
29 | # |
---|
30 | # DESCRIPTION |
---|
31 | # =========== |
---|
32 | # |
---|
33 | # |
---|
34 | # Simple job for SET TESTS for NEMO (SETTE) |
---|
35 | # |
---|
36 | # |
---|
37 | # EXAMPLES |
---|
38 | # ======== |
---|
39 | # |
---|
40 | # :: |
---|
41 | # |
---|
42 | # $ ./fcm_job.sh INPUT_FILE_CONFIG_NAME NUMBER_PROC |
---|
43 | # |
---|
44 | # run a job of config GYRE with 1 processor |
---|
45 | # $ ./fcm_job.sh input_GYRE.cfg 1 |
---|
46 | # |
---|
47 | # run a job of config ORCA2_LIM_PISCES with 8 processors |
---|
48 | # $ ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8 |
---|
49 | # |
---|
50 | # |
---|
51 | # TODO |
---|
52 | # ==== |
---|
53 | # |
---|
54 | # option debug |
---|
55 | # |
---|
56 | # |
---|
57 | # EVOLUTIONS |
---|
58 | # ========== |
---|
59 | # |
---|
60 | # $Id$ |
---|
61 | # |
---|
62 | # |
---|
63 | # |
---|
64 | # * creation |
---|
65 | # |
---|
66 | #- |
---|
67 | # |
---|
68 | |
---|
69 | usage=" Usage : ./fcm_job.sh input_CONFIG_NAME.cfg NUMBER_OF_PROCS" |
---|
70 | usage=" example : ./fcm_job.sh input_ORCA2_LIM_PISCES.cfg 8" |
---|
71 | |
---|
72 | |
---|
73 | minargcount=2 |
---|
74 | if [ ${#} -lt ${minargcount} ] |
---|
75 | then |
---|
76 | echo "not enought arguments for fcm_job.sh script" |
---|
77 | echo "control number of argument of fcm_job.sh in sette.sh" |
---|
78 | echo "${usage}" |
---|
79 | exit 1 |
---|
80 | fi |
---|
81 | unset minargcount |
---|
82 | if [ -f ${SETTE_DIR}/output.sette ] ; then |
---|
83 | echo "file output already present. Append comments" |
---|
84 | echo "`ls ${SETTE_DIR}/output.sette`" |
---|
85 | else |
---|
86 | echo "file output not present" |
---|
87 | touch ${SETTE_DIR}/output.sette |
---|
88 | echo "`ls ${SETTE_DIR}/output.sette`" |
---|
89 | fi |
---|
90 | echo "executing script : fcm_job $@" >> ${SETTE_DIR}/output.sette |
---|
91 | echo " " >> ${SETTE_DIR}/output.sette |
---|
92 | |
---|
93 | # SET INPUT |
---|
94 | # get the input tarfile if needed |
---|
95 | tar_file=$(sed -ne "1,1p" $1) |
---|
96 | if [ "$(cat $1 | grep -c ".tar" )" -ne 0 ] ; then |
---|
97 | echo "looking for tar file" >> ${SETTE_DIR}/output.sette |
---|
98 | echo " " >> ${SETTE_DIR}/output.sette |
---|
99 | cp ${FORCING_DIR}/${tar_file} ${INPUT_DIR}/. |
---|
100 | cd ${INPUT_DIR} ; tar xvf ${INPUT_DIR}/*.tar ; gunzip *gz |
---|
101 | fi |
---|
102 | |
---|
103 | if [ -f ${INPUT_DIR}/namelist_ice_lim2 ] ; then |
---|
104 | echo "choosing for namelist ice " >> ${SETTE_DIR}/output.sette |
---|
105 | echo " " >> ${SETTE_DIR}/output.sette |
---|
106 | cp ${INPUT_DIR}/namelist_ice_lim2 ${INPUT_DIR}/namelist_ice |
---|
107 | elif [ -f ${INPUT_DIR}/namelist_ice_lim3 ] ; then |
---|
108 | cp ${INPUT_DIR}/namelist_ice_lim3 ${INPUT_DIR}/namelist_ice |
---|
109 | fi |
---|
110 | |
---|
111 | |
---|
112 | if [ "$(cat ${CONFIG_DIR}/${NEW_CONF}/cpp_${NEW_CONF}.fcm | grep -c "agrif" )" -ne 0 ] ; then |
---|
113 | #- Namelist for ocean and ice (agrif fine grid) |
---|
114 | echo "choosing for namelist for AGRIF" >> ${SETTE_DIR}/output.sette |
---|
115 | echo " " >> ${SETTE_DIR}/output.sette |
---|
116 | cp ${INPUT_DIR}/1_namelist_ice_lim2 ${INPUT_DIR}/1_namelist_ice |
---|
117 | fi |
---|
118 | ################################################################ |
---|
119 | |
---|
120 | ################################################################ |
---|
121 | # RUN OPA |
---|
122 | cd ${INPUT_DIR} |
---|
123 | NB_PROC=$2 |
---|
124 | if [ ! -r ${INPUT_DIR}/opa ] |
---|
125 | then |
---|
126 | echo "executable opa does not exist" |
---|
127 | exit 1 |
---|
128 | fi |
---|
129 | if [ ${NB_PROC} == 1 ] ; then |
---|
130 | echo "running opa" >> ${SETTE_DIR}/output.sette |
---|
131 | echo " " >> ${SETTE_DIR}/output.sette |
---|
132 | ./opa |
---|
133 | else |
---|
134 | echo "running opa in MPI" >> ${SETTE_DIR}/output.sette |
---|
135 | echo " " >> ${SETTE_DIR}/output.sette |
---|
136 | # example for brodie (NEC SX8) machine |
---|
137 | # mpirun -np ${NB_PROC} opa |
---|
138 | # example for dedale machine |
---|
139 | # mpirun --mca btl self,tcp -np ${NB_PROC} opa |
---|
140 | # example for vargas (IBM Power6) machine |
---|
141 | mpiexec -n ${NB_PROC} opa |
---|
142 | fi |
---|
143 | ################################################################ |
---|
144 | |
---|
145 | ################################################################ |
---|
146 | ## -- Save output files |
---|
147 | |
---|
148 | #- Save ocean output files |
---|
149 | echo "saving ocean & ice output, debug & restarts files" >> ${SETTE_DIR}/output.sette |
---|
150 | echo " " >> ${SETTE_DIR}/output.sette |
---|
151 | [ ! -d ${OUTPUT_DIR} ] && mkdir ${OUTPUT_DIR} |
---|
152 | [ -f *ocean.output ] && mv *ocean.output ${OUTPUT_DIR}/. |
---|
153 | [ -f *solver.stat ] && mv *solver.stat ${OUTPUT_DIR}/. |
---|
154 | [ -n "$(ls *_grid_*)" ] && mv *_grid_*.nc ${OUTPUT_DIR}/. |
---|
155 | [ -f restart* ] && cp restart* ${OUTPUT_DIR}/. |
---|
156 | [ -f ice_evolu ] && mv ice_evolu ${OUTPUT_DIR}/. |
---|
157 | [ -n "$(ls *icemod*)" ] && mv *icemod* ${OUTPUT_DIR}/. |
---|
158 | #- Save ftrace file |
---|
159 | [ -f ftrace.out* ] && cp ftrace.out* ${OUTPUT_DIR}/. |
---|
160 | ################################################################ |
---|
161 | |
---|