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job_GYRE.ksh in trunk/VALID/2INSTALL/JOBS – NEMO

source: trunk/VALID/2INSTALL/JOBS/job_GYRE.ksh @ 1128

Last change on this file since 1128 was 1128, checked in by ctlod, 16 years ago

trunk: adapt NVTK jobs to changes related to namelists, see tickets: #174, #184, #204
File size: 7.9 KB
Line 
1set -xv
2
3CONF=GYRE
4# Variables changed by lance_batch.ksh script
5RUN=xxx
6NB_PROCS=xxx
7LAUNCH=xxx
8LEXE=xxx
9CPERF=xxx
10D_INPUT=xxx
11D_GET=xxx
12REF_TAG=xxx
13TSYMB=xxx
14
15# Variables changed by ins_valid.ksh script
16MAINDIR=/Users/ctlod/WORK/AZE
17WORK=/Users/ctlod/WORK/AZE/modipsl/config
18REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO
19
20# Arguments
21# type = 'long' or '1_short' or '2_short'
22type=$1
23
24case ${type} in
25        'long' ) 
26             DIROUT='LONG'
27             ITERATIONS=360 ;;
28             
29        '1_short' ) 
30             DIROUT='1_SHORT'
31             ITERATIONS=180 ;;
32             
33        '2_short' ) 
34             DIROUT='2_SHORT'
35             ITERATIONS=180 ;;
36
37        'gtime' ) 
38             DIROUT='GTIME'
39             ITERATIONS=4320 ;;
40esac
41
42# Working directory
43cd ${TMPDIR}
44#-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN
45#-T- osxxlf zback=$?
46#-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi
47
48##############################################################
49##############################################################
50##############################################################
51###             Input files
52##############################################################
53##############################################################
54##############################################################
55# Ocean namelist
56cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist .
57
58# namelist modifications
59PAT_NIT000=$( grep 'nit000      =' namelist )
60PAT_NITEND=$( grep 'nitend      =' namelist )
61PAT_NSTOCK=$( grep 'nstock      =' namelist )
62PAT_NWRITE=$( grep 'nwrite      =' namelist )
63PAT_NRSTDT=$( grep 'nrstdt      =' namelist )
64PAT_NBITCM=$( grep 'nbit_cmp   ='   namelist )
65PAT_NSOLVV=$( grep 'nsolv       =' namelist )
66PAT_RESTAR=$( grep 'ln_rstart   =' namelist )
67PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
68
69sed    -e "s%$PAT_RESTAR%   ln_rstart   =  .false.%" \
70-e "s%$PAT_NIT000%   nit000     =     1%" \
71-e "s%$PAT_NITEND%   nitend     =     ${ITERATIONS}%" \
72-e "s%$PAT_NSTOCK%   nstock     =     ${ITERATIONS}%" \
73-e "s%$PAT_NWRITE%   nwrite     =     75%" \
74-e "s%$PAT_NRSTDT%   nrstdt     =     0%" \
75-e "s%$PAT_NBITCM%   nbit_cmp =     1%" \
76-e "s%$PAT_NSOLVV%   nsolv     =      2%" \
77-e "s%$PAT_RESMLD%   ln_trdmld_restart =  .false.%" \
78namelist > nam.tmp
79
80mv nam.tmp namelist
81
82# Analytical forcing
83
84# Get restarts files if needed
85if [ $type = '2_short' ]
86then
87    if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then
88        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc
89        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc
90    fi
91
92    if [ ${RUN} = 'mpi' ] ; then
93        typeset -Z4 i=0
94        while [ $i -lt $NB_PROCS ]
95        do
96           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc
97           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc
98           let i=$i+1
99        done
100    fi
101
102    # namelist modifications
103    PAT_NIT000=$( grep 'nit000     =' namelist )
104    PAT_NITEND=$( grep 'nitend     =' namelist )
105    PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
106    PAT_RESTAR=$( grep 'ln_rstart   =' namelist )
107    PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
108    ORCA_NIT000=$(( $ITERATIONS + 1 ))
109    ORCA_NITEND=$(( $ITERATIONS*2 ))
110   
111    sed    -e "s/$PAT_RESTAR/   ln_rstart   =  .true./" \
112    -e "s/$PAT_NIT000/   nit000     =     $ORCA_NIT000/" \
113    -e "s/$PAT_NITEND/   nitend     =     $ORCA_NITEND/" \
114    -e "s/$PAT_NRSTDT/   nrstdt     =     2/" \
115    -e "s/$PAT_RESMLD/   ln_trdmld_restart =  .true./" \
116    namelist > nam.tmp
117   
118    mv nam.tmp namelist
119
120fi
121
122##############################################################
123##############################################################
124##############################################################
125###             Launch run
126##############################################################
127##############################################################
128##############################################################
129
130cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN}
131cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo
132chmod 777 opa_${CONF}_${RUN}
133chmod 777 opa_${CONF}_memo
134
135#
136# Profiling & Executable memory size
137####################################
138touch memory_size.txt
139
140case ${RUN} in
141        'mon' ) 
142#-T- sx8brodie export F_PROGINF=detail
143#-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )"    >> memory_size.txt
144#-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )"   >> memory_size.txt  ;;
145#-T- aix     ;;
146#-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
147#-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
148#-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
149#-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
150        'mpi' ) 
151#-T- sx8brodie export MPIPROGINF=detail ;;
152#-T- aix     ;;
153#-T- ax_mono ;;
154#-T- osxxlf  ;;
155        'omp' ) 
156#-T- sx8brodie export F_PROGINF=detail
157#-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;;
158#-T- aix     ;;
159#-T- ax_mono ;;
160#-T- osxxlf  ;;
161esac
162#
163# >>>>>> EXECUTION < < < <
164##########################
165
166case ${RUN} in
167        'mon' | 'omp' ) 
168              ${CPERF} ./opa_${CONF}_${RUN} ;;
169        'mpi' ) 
170#-T- sx8brodie              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
171#-T- aix              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
172#-T- osxxlf   mpd&
173#-T- osxxlf   sleep 5
174#-T- osxxlf   ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}
175#-T- osxxlf   mpdallexit ;;
176esac
177
178ls -l
179#
180
181##############################################################
182##############################################################
183##############################################################
184###             Save output files
185##############################################################
186##############################################################
187##############################################################
188case ${RUN} in
189   'mon' | 'omp' )
190               liste_files=' *abort* memory* namelist* perfs* solver.stat ocean.output layout* GYRE* restart* mono*' ;;
191   'mpi' )
192               liste_files=' *abort* namelist* solver.stat perfs* ocean.output* layout* GYRE* restart* mpp*' ;;
193esac
194
195# Ensure that all files saved are coming from the current run
196ind=1
197for k in $liste_files
198do
199   echo $k > temp
200   var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) )
201   if [ ${ind} = 1 -a ${var} = 'perf' ] ; then
202       kc='perf*'
203       rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc}
204       ind=0
205   fi
206   cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k
207done
208
209##############################################################
210##############################################################
211##############################################################
212###             Retrieve some reference run files
213##############################################################
214##############################################################
215##############################################################
216if [ ${REF_TAG} ]
217then
218   STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT}
219   LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err"
220   for ref_file in ${LFILES}
221   do
222       ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file}
223   done
224fi
225
226##############################################################
227##############################################################
228##############################################################
229###             Launch restart job
230##############################################################
231##############################################################
232##############################################################
233if [ $type = '1_short' ] ; then
234    cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT
235    ${LAUNCH}job_${RUN}_2_short.ksh
236fi
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