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job_GYRE.ksh in trunk/VALID/2INSTALL/JOBS – NEMO

source: trunk/VALID/2INSTALL/JOBS/job_GYRE.ksh @ 744

Last change on this file since 744 was 744, checked in by ctlod, 16 years ago

ensure interactive jobs to work properly
File size: 8.0 KB
Line 
1set -xv
2
3CONF=GYRE
4# Variables changed by lance_batch.ksh script
5RUN=xxx
6NB_PROCS=xxx
7LAUNCH=xxx
8LEXE=xxx
9CPERF=xxx
10D_INPUT=xxx
11D_GET=xxx
12REF_TAG=xxx
13TSYMB=xxx
14
15# Variables changed by ins_valid.ksh script
16MAINDIR=/Users/ctlod/WORK/AZE
17WORK=/Users/ctlod/WORK/AZE/modipsl/config
18REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO
19
20# Arguments
21# type = 'long' or '1_short' or '2_short'
22type=$1
23
24case ${type} in
25        'long' ) 
26             DIROUT='LONG'
27             ITERATIONS=360 ;;
28             
29        '1_short' ) 
30             DIROUT='1_SHORT'
31             ITERATIONS=180 ;;
32             
33        '2_short' ) 
34             DIROUT='2_SHORT'
35             ITERATIONS=180 ;;
36
37        'gtime' ) 
38             DIROUT='GTIME'
39             ITERATIONS=4320 ;;
40esac
41
42# Working directory
43cd ${TMPDIR}
44#-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN
45#-T- osxxlf zback=$?
46#-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi
47
48##############################################################
49##############################################################
50##############################################################
51###             Input files
52##############################################################
53##############################################################
54##############################################################
55# Ocean namelist
56cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist namelist_f90
57sed -e /!/d  namelist_f90 > namelist
58
59# namelist modifications
60PAT_NIT000=$( grep 'nit000     =' namelist )
61PAT_NITEND=$( grep 'nitend     =' namelist )
62PAT_NSTOCK=$( grep 'nstock     =' namelist )
63PAT_NWRITE=$( grep 'nwrite     =' namelist )
64PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
65PAT_NBITCM=$( grep 'nbit_cmp ='   namelist )
66PAT_NSOLVV=$( grep 'nsolv     =' namelist )
67PAT_RESTAR=$( grep 'ln_rstart  =' namelist )
68PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
69
70sed    -e "s/$PAT_RESTAR/   ln_rstart  =  .false./" \
71-e "s/$PAT_NIT000/   nit000     =     1/" \
72-e "s/$PAT_NITEND/   nitend     =     ${ITERATIONS}/" \
73-e "s/$PAT_NSTOCK/   nstock     =     ${ITERATIONS}/" \
74-e "s/$PAT_NWRITE/   nwrite     =     60/" \
75-e "s/$PAT_NRSTDT/   nrstdt     =     0/" \
76-e "s/$PAT_NBITCM/   nbit_cmp =     1/" \
77-e "s/$PAT_NSOLVV/   nsolv     =      2/" \
78-e "s/$PAT_RESMLD/   ln_trdmld_restart  =  .false./" \
79namelist > nam.tmp
80
81mv nam.tmp namelist
82
83# Analytical forcing
84
85# Get restarts files if needed
86if [ $type = '2_short' ]
87then
88    if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then
89        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc
90        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc
91    fi
92
93    if [ ${RUN} = 'mpi' ] ; then
94        typeset -Z4 i=0
95        while [ $i -lt $NB_PROCS ]
96        do
97           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc
98           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc
99           let i=$i+1
100        done
101    fi
102
103    # namelist modifications
104    PAT_NIT000=$( grep 'nit000     =' namelist )
105    PAT_NITEND=$( grep 'nitend     =' namelist )
106    PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
107    PAT_RESTAR=$( grep 'ln_rstart  =' namelist )
108    PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
109    ORCA_NIT000=$(( $ITERATIONS + 1 ))
110    ORCA_NITEND=$(( $ITERATIONS*2 ))
111   
112    sed    -e "s/$PAT_RESTAR/   ln_rstart  =  .true./" \
113    -e "s/$PAT_NIT000/   nit000     =     $ORCA_NIT000/" \
114    -e "s/$PAT_NITEND/   nitend     =     $ORCA_NITEND/" \
115    -e "s/$PAT_NRSTDT/   nrstdt     =     2/" \
116    -e "s/$PAT_RESMLD/   ln_trdmld_restart  =  .true./" \
117    namelist > nam.tmp
118   
119    mv nam.tmp namelist
120
121fi
122
123##############################################################
124##############################################################
125##############################################################
126###             Launch run
127##############################################################
128##############################################################
129##############################################################
130
131cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN}
132cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo
133chmod 777 opa_${CONF}_${RUN}
134chmod 777 opa_${CONF}_memo
135
136#
137# Profiling & Executable memory size
138####################################
139touch memory_size.txt
140
141case ${RUN} in
142        'mon' ) 
143#-T- sx8brodie export F_PROGINF=detail
144#-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )"    >> memory_size.txt
145#-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )"   >> memory_size.txt  ;;
146#-T- aix     ;;
147#-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
148#-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
149#-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
150#-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
151        'mpi' ) 
152#-T- sx8brodie export MPIPROGINF=detail ;;
153#-T- aix     ;;
154#-T- ax_mono ;;
155#-T- osxxlf  ;;
156        'omp' ) 
157#-T- sx8brodie export F_PROGINF=detail
158#-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;;
159#-T- aix     ;;
160#-T- ax_mono ;;
161#-T- osxxlf  ;;
162esac
163#
164# >>>>>> EXECUTION < < < <
165##########################
166
167case ${RUN} in
168        'mon' | 'omp' ) 
169              ${CPERF} ./opa_${CONF}_${RUN} ;;
170        'mpi' ) 
171#-T- sx8brodie              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
172#-T- aix              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
173#-T- osxxlf   mpd&
174#-T- osxxlf   sleep 5
175#-T- osxxlf   ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}
176#-T- osxxlf   mpdallexit ;;
177esac
178
179ls -l
180#
181
182##############################################################
183##############################################################
184##############################################################
185###             Save output files
186##############################################################
187##############################################################
188##############################################################
189case ${RUN} in
190   'mon' | 'omp' )
191               liste_files=' *abort* memory* namelist* perfs* solver.stat ocean.output layout* GYRE* restart* mono*' ;;
192   'mpi' )
193               liste_files=' *abort* namelist* solver.stat perfs* ocean.output* layout* GYRE* restart* mpp*' ;;
194esac
195
196# Ensure that all files saved are coming from the current run
197ind=1
198for k in $liste_files
199do
200   echo $k > temp
201   var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) )
202   if [ ${ind} = 1 -a ${var} == 'perf' ] ; then
203       kc='perf*'
204       rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc}
205       ind=0
206   fi
207   cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k
208done
209
210##############################################################
211##############################################################
212##############################################################
213###             Retrieve some reference run files
214##############################################################
215##############################################################
216##############################################################
217if [ ${REF_TAG} ]
218then
219   STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT}
220   LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err"
221   for ref_file in ${LFILES}
222   do
223       ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file}
224   done
225fi
226
227##############################################################
228##############################################################
229##############################################################
230###             Launch restart job
231##############################################################
232##############################################################
233##############################################################
234if [ $type = '1_short' ] ; then
235    cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT
236    ${LAUNCH}job_${RUN}_2_short.ksh
237fi
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