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job_ORCA2_LIM.ksh in trunk/VALID/2INSTALL/JOBS – NEMO

source: trunk/VALID/2INSTALL/JOBS/job_ORCA2_LIM.ksh @ 1115

Last change on this file since 1115 was 1115, checked in by ctlod, 16 years ago

trunk: adapt NVTK jobs to the namelists re-organization, see ticket: #125

File size: 8.6 KB
Line 
1set -xv
2
3CONF=ORCA2_LIM
4# Variables changed by lance_batch.ksh script
5RUN=xxx
6NB_PROCS=xxx
7LAUNCH=xxx
8LEXE=xxx
9CPERF=xxx
10D_INPUT=xxx
11D_GET=xxx
12REF_TAG=xxx
13TSYMB=xxx
14
15# Variables changed by ins_valid.ksh script
16MAINDIR=/Users/ctlod/WORK/AZE
17WORK=/Users/ctlod/WORK/AZE/modipsl/config
18REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO
19
20# Arguments
21# type = 'long' or '1_short' or '2_short'
22type=$1
23
24case ${type} in
25        'long' ) 
26             DIROUT='LONG'
27             ITERATIONS=210 ;;
28             
29        '1_short' ) 
30             DIROUT='1_SHORT'
31             ITERATIONS=105 ;;
32             
33        '2_short' ) 
34             DIROUT='2_SHORT'
35             ITERATIONS=105 ;;
36
37        'gtime' ) 
38             DIROUT='GTIME'
39             ITERATIONS=5475 ;;
40esac
41
42# Working directory
43cd ${TMPDIR}
44#-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN
45#-T- osxxlf zback=$?
46#-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi
47
48##############################################################
49##############################################################
50##############################################################
51###             Input files
52##############################################################
53##############################################################
54##############################################################
55# Ocean namelist
56cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist .
57
58# Sea-Ice namelist
59cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_ice_lim2 namelist_ice
60
61# namelist modifications
62PAT_NIT000=$( grep 'nit000      =' namelist )
63PAT_NITEND=$( grep 'nitend      =' namelist )
64PAT_NSTOCK=$( grep 'nstock      =' namelist )
65PAT_NWRITE=$( grep 'nwrite      =' namelist )
66PAT_NRSTDT=$( grep 'nrstdt      =' namelist )
67PAT_NBITCM=$( grep 'nbit_cmp   ='   namelist )
68PAT_TRACEN=$( grep 'ln_traadv_cen2   =' namelist )
69PAT_TRATVD=$( grep 'ln_traadv_tvd    =' namelist )
70PAT_N_CLAA=$( grep 'n_cla       =' namelist )
71PAT_NSOLVV=$( grep 'nsolv       =' namelist )
72PAT_RESTAR=$( grep 'ln_rstart   =' namelist )
73PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
74
75sed    -e "s%$PAT_RESTAR%   ln_rstart  =  .false.%" \
76-e "s%$PAT_NIT000%   nit000     =     1%" \
77-e "s%$PAT_NITEND%   nitend     =     ${ITERATIONS}%" \
78-e "s%$PAT_NSTOCK%   nstock     =     ${ITERATIONS}%" \
79-e "s%$PAT_NWRITE%   nwrite     =     75%" \
80-e "s%$PAT_NRSTDT%   nrstdt     =     0%" \
81-e "s%$PAT_NBITCM%   nbit_cmp =     1%" \
82-e "s%$PAT_TRACEN%   ln_traadv_cen2   =  .false.%" \
83-e "s%$PAT_TRATVD%   ln_traadv_tvd    =  .true.%" \
84-e "s%$PAT_N_CLAA%   n_cla   = 0%" \
85-e "s%$PAT_NSOLVV%   nsolv     =      2%" \
86-e "s%$PAT_RESMLD%   ln_trdmld_restart  =  .false.%" \
87namelist > nam.tmp
88
89mv nam.tmp namelist
90
91# Get forcing files
92${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v3.tar ORCA2_LIM_nemo_v3.tar
93tar xvf ORCA2_LIM_nemo_v3.tar
94rm -rf ORCA2_LIM_nemo_v3.tar
95
96# Get restarts files if needed
97if [ $type = '2_short' ]
98then
99    if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then
100        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc
101        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*restart_ice.nc restart_ice_in.nc
102        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc
103    fi
104
105    if [ ${RUN} = 'mpi' ] ; then
106        typeset -Z4 i=0
107        while [ $i -lt $NB_PROCS ]
108        do
109           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc
110           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*restart_ice_${i}.nc restart_ice_in_${i}.nc
111           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc
112           let i=$i+1
113        done
114    fi
115
116    # namelist modifications
117    PAT_NIT000=$( grep 'nit000     =' namelist )
118    PAT_NITEND=$( grep 'nitend     =' namelist )
119    PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
120    PAT_RESTAR=$( grep 'ln_rstart  =' namelist )
121    PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
122    ORCA_NIT000=$(( $ITERATIONS + 1 ))
123    ORCA_NITEND=$(( $ITERATIONS*2 ))
124   
125    sed    -e "s/$PAT_RESTAR/   ln_rstart  =  .true./" \
126    -e "s/$PAT_NIT000/   nit000     =     $ORCA_NIT000/" \
127    -e "s/$PAT_NITEND/   nitend     =     $ORCA_NITEND/" \
128    -e "s/$PAT_NRSTDT/   nrstdt     =     2/" \
129    -e "s/$PAT_RESMLD/   ln_trdmld_restart  =  .true./" \
130    namelist > nam.tmp
131   
132    mv nam.tmp namelist
133
134fi
135
136##############################################################
137##############################################################
138##############################################################
139###             Launch run
140##############################################################
141##############################################################
142##############################################################
143
144cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN}
145cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo
146chmod 777 opa_${CONF}_${RUN}
147chmod 777 opa_${CONF}_memo
148
149#
150# Profiling & Executable memory size
151####################################
152touch memory_size.txt
153
154case ${RUN} in
155        'mon' ) 
156#-T- sx8brodie export F_PROGINF=detail
157#-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )"    >> memory_size.txt
158#-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )"   >> memory_size.txt  ;;
159#-T- aix     ;;
160#-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
161#-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
162#-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
163#-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
164        'mpi' ) 
165#-T- sx8brodie export MPIPROGINF=detail ;;
166#-T- aix     ;;
167#-T- ax_mono ;;
168#-T- osxxlf  ;;
169        'omp' ) 
170#-T- sx8brodie export F_PROGINF=detail
171#-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;;
172#-T- aix     ;;
173#-T- ax_mono ;;
174#-T- osxxlf  ;;
175esac
176#
177# >>>>>> EXECUTION < < < <
178##########################
179
180case ${RUN} in
181        'mon' | 'omp' ) 
182              ${CPERF} ./opa_${CONF}_${RUN} ;;
183        'mpi' ) 
184#-T- sx8brodie              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
185#-T- aix              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
186#-T- osxxlf   mpd&
187#-T- osxxlf   sleep 5
188#-T- osxxlf   ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}
189#-T- osxxlf   mpdallexit ;;
190esac
191
192ls -l
193#
194
195##############################################################
196##############################################################
197##############################################################
198###             Save output files
199##############################################################
200##############################################################
201##############################################################
202case ${RUN} in
203   'mon' | 'omp' )
204               liste_files='*abort* memory* namelist* perfs* solver.stat ocean.output layout* ORCA2* restart* mono*' ;;
205   'mpi' )
206               liste_files='*abort* namelist* solver.stat perfs* ocean.output* layout* ORCA2* restart* mpp*' ;;
207esac
208
209# Ensure that all files saved are coming from the current run
210ind=1
211for k in $liste_files
212do
213   echo $k > temp
214   var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) )
215   if [ ${ind} = 1 -a ${var} = 'perf' ] ; then
216       kc='perf*'
217       rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc}
218       ind=0
219   fi
220   cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k
221done
222
223##############################################################
224##############################################################
225##############################################################
226###             Retrieve some reference run files
227##############################################################
228##############################################################
229##############################################################
230if [ ${REF_TAG} ]
231then
232   STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT}
233   LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err"
234   for ref_file in ${LFILES}
235   do
236       ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file}
237   done
238fi
239
240##############################################################
241##############################################################
242##############################################################
243###             Launch restart job
244##############################################################
245##############################################################
246##############################################################
247if [ $type = '1_short' ] ; then
248    cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT
249    ${LAUNCH}job_${RUN}_2_short.ksh
250fi
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