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job_ORCA2_LIM.ksh in trunk/VALID/2INSTALL/JOBS – NEMO

source: trunk/VALID/2INSTALL/JOBS/job_ORCA2_LIM.ksh @ 744

Last change on this file since 744 was 744, checked in by ctlod, 16 years ago

ensure interactive jobs to work properly
File size: 8.8 KB
Line 
1set -xv
2
3CONF=ORCA2_LIM
4# Variables changed by lance_batch.ksh script
5RUN=xxx
6NB_PROCS=xxx
7LAUNCH=xxx
8LEXE=xxx
9CPERF=xxx
10D_INPUT=xxx
11D_GET=xxx
12REF_TAG=xxx
13TSYMB=xxx
14
15# Variables changed by ins_valid.ksh script
16MAINDIR=/Users/ctlod/WORK/AZE
17WORK=/Users/ctlod/WORK/AZE/modipsl/config
18REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO
19
20# Arguments
21# type = 'long' or '1_short' or '2_short'
22type=$1
23
24case ${type} in
25        'long' ) 
26             DIROUT='LONG'
27             ITERATIONS=210 ;;
28             
29        '1_short' ) 
30             DIROUT='1_SHORT'
31             ITERATIONS=105 ;;
32             
33        '2_short' ) 
34             DIROUT='2_SHORT'
35             ITERATIONS=105 ;;
36
37        'gtime' ) 
38             DIROUT='GTIME'
39             ITERATIONS=5475 ;;
40esac
41
42# Working directory
43cd ${TMPDIR}
44#-T- osxxlf cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/RUN
45#-T- osxxlf zback=$?
46#-T- osxxlf if [ ${zback} = 0 ] ; then rm -rf namelist* *.nc memory* solver.stat ocean.output* mpp.output* mono.output* ; fi
47
48##############################################################
49##############################################################
50##############################################################
51###             Input files
52##############################################################
53##############################################################
54##############################################################
55# Ocean namelist
56cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist namelist_f90
57sed -e /!/d  namelist_f90 > namelist
58
59# Sea-Ice namelist
60cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_ice namelist_ice_f90
61sed -e /!/d  namelist_ice_f90 > namelist_ice
62
63# namelist modifications
64PAT_NIT000=$( grep 'nit000     =' namelist )
65PAT_NITEND=$( grep 'nitend     =' namelist )
66PAT_NSTOCK=$( grep 'nstock     =' namelist )
67PAT_NWRITE=$( grep 'nwrite     =' namelist )
68PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
69PAT_NBITCM=$( grep 'nbit_cmp ='   namelist )
70PAT_TRACEN=$( grep 'ln_traadv_cen2   =' namelist )
71PAT_TRATVD=$( grep 'ln_traadv_tvd    =' namelist )
72PAT_LN_FWB=$( grep 'ln_fwb    =' namelist )
73PAT_N_CLAA=$( grep 'n_cla   =' namelist )
74PAT_NSOLVV=$( grep 'nsolv     =' namelist )
75PAT_RESTAR=$( grep 'ln_rstart  =' namelist )
76PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
77
78sed    -e "s/$PAT_RESTAR/   ln_rstart  =  .false./" \
79-e "s/$PAT_NIT000/   nit000     =     1/" \
80-e "s/$PAT_NITEND/   nitend     =     ${ITERATIONS}/" \
81-e "s/$PAT_NSTOCK/   nstock     =     ${ITERATIONS}/" \
82-e "s/$PAT_NWRITE/   nwrite     =     75/" \
83-e "s/$PAT_NRSTDT/   nrstdt     =     0/" \
84-e "s/$PAT_NBITCM/   nbit_cmp =     1/" \
85-e "s/$PAT_TRACEN/   ln_traadv_cen2   =  .false./" \
86-e "s/$PAT_TRATVD/   ln_traadv_tvd    =  .true./" \
87-e "s/$PAT_LN_FWB/   ln_fwb    =  .false./" \
88-e "s/$PAT_N_CLAA/   n_cla   = 0/" \
89-e "s/$PAT_NSOLVV/   nsolv     =      2/" \
90-e "s/$PAT_RESMLD/   ln_trdmld_restart  =  .false./" \
91namelist > nam.tmp
92
93mv nam.tmp namelist
94
95# Get forcing files
96${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v2.tar ORCA2_LIM_nemo_v2.tar
97tar xvf ORCA2_LIM_nemo_v2.tar
98rm -rf ORCA2_LIM_nemo_v2.tar
99
100# Get restarts files if needed
101if [ $type = '2_short' ]
102then
103    if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then
104        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart.nc restart.nc
105        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*restart_ice.nc restart_ice_in.nc
106        cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc
107    fi
108
109    if [ ${RUN} = 'mpi' ] ; then
110        typeset -Z4 i=0
111        while [ $i -lt $NB_PROCS ]
112        do
113           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_${i}.nc restart_${i}.nc
114           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*restart_ice_${i}.nc restart_ice_in_${i}.nc
115           cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc
116           let i=$i+1
117        done
118    fi
119
120    # namelist modifications
121    PAT_NIT000=$( grep 'nit000     =' namelist )
122    PAT_NITEND=$( grep 'nitend     =' namelist )
123    PAT_NRSTDT=$( grep 'nrstdt     =' namelist )
124    PAT_RESTAR=$( grep 'ln_rstart  =' namelist )
125    PAT_RESMLD=$( grep 'ln_trdmld_restart =' namelist )
126    ORCA_NIT000=$(( $ITERATIONS + 1 ))
127    ORCA_NITEND=$(( $ITERATIONS*2 ))
128   
129    sed    -e "s/$PAT_RESTAR/   ln_rstart  =  .true./" \
130    -e "s/$PAT_NIT000/   nit000     =     $ORCA_NIT000/" \
131    -e "s/$PAT_NITEND/   nitend     =     $ORCA_NITEND/" \
132    -e "s/$PAT_NRSTDT/   nrstdt     =     2/" \
133    -e "s/$PAT_RESMLD/   ln_trdmld_restart  =  .true./" \
134    namelist > nam.tmp
135   
136    mv nam.tmp namelist
137
138fi
139
140##############################################################
141##############################################################
142##############################################################
143###             Launch run
144##############################################################
145##############################################################
146##############################################################
147
148cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN}
149cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo
150chmod 777 opa_${CONF}_${RUN}
151chmod 777 opa_${CONF}_memo
152
153#
154# Profiling & Executable memory size
155####################################
156touch memory_size.txt
157
158case ${RUN} in
159        'mon' ) 
160#-T- sx8brodie export F_PROGINF=detail
161#-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )"    >> memory_size.txt
162#-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )"   >> memory_size.txt  ;;
163#-T- aix     ;;
164#-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
165#-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
166#-T- osxxlf echo "Stack memory: $( (size opa_${CONF}_memo) )"    >> memory_size.txt
167#-T- osxxlf echo "Static memory: $( (size opa_${CONF}_${RUN}) )"   >> memory_size.txt ;;
168        'mpi' ) 
169#-T- sx8brodie export MPIPROGINF=detail ;;
170#-T- aix     ;;
171#-T- ax_mono ;;
172#-T- osxxlf  ;;
173        'omp' ) 
174#-T- sx8brodie export F_PROGINF=detail
175#-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} ;;
176#-T- aix     ;;
177#-T- ax_mono ;;
178#-T- osxxlf  ;;
179esac
180#
181# >>>>>> EXECUTION < < < <
182##########################
183
184case ${RUN} in
185        'mon' | 'omp' ) 
186              ${CPERF} ./opa_${CONF}_${RUN} ;;
187        'mpi' ) 
188#-T- sx8brodie              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
189#-T- aix              ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;;
190#-T- osxxlf   mpd&
191#-T- osxxlf   sleep 5
192#-T- osxxlf   ${CPERF} ${LEXE} ./opa_${CONF}_${RUN}
193#-T- osxxlf   mpdallexit ;;
194esac
195
196ls -l
197#
198
199##############################################################
200##############################################################
201##############################################################
202###             Save output files
203##############################################################
204##############################################################
205##############################################################
206case ${RUN} in
207   'mon' | 'omp' )
208               liste_files='*abort* memory* namelist* perfs* solver.stat ocean.output layout* ORCA2* restart* mono*' ;;
209   'mpi' )
210               liste_files='*abort* namelist* solver.stat perfs* ocean.output* layout* ORCA2* restart* mpp*' ;;
211esac
212
213# Ensure that all files saved are coming from the current run
214ind=1
215for k in $liste_files
216do
217   echo $k > temp
218   var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) )
219   if [ ${ind} = 1 -a ${var} == 'perf' ] ; then
220       kc='perf*'
221       rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc}
222       ind=0
223   fi
224   cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k
225done
226
227##############################################################
228##############################################################
229##############################################################
230###             Retrieve some reference run files
231##############################################################
232##############################################################
233##############################################################
234if [ ${REF_TAG} ]
235then
236   STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT}
237   LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err"
238   for ref_file in ${LFILES}
239   do
240       ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file}
241   done
242fi
243
244##############################################################
245##############################################################
246##############################################################
247###             Launch restart job
248##############################################################
249##############################################################
250##############################################################
251if [ $type = '1_short' ] ; then
252    cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT
253    ${LAUNCH}job_${RUN}_2_short.ksh
254fi
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