1 | set -xv |
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2 | |
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3 | CONF=ZAGRIF |
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4 | # Variables changed by lance_batch.ksh script |
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5 | RUN=xxx |
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6 | NB_PROCS=xxx |
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7 | LAUNCH=xxx |
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8 | LEXE=xxx |
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9 | CPERF=xxx |
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10 | D_INPUT=xxx |
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11 | D_GET=xxx |
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12 | REF_TAG=xxx |
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13 | TSYMB=xxx |
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14 | |
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15 | # Variables changed by ins_valid.ksh script |
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16 | MAINDIR=/Users/ctlod/WORK/AZE |
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17 | WORK=/Users/ctlod/WORK/AZE/modipsl/config |
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18 | REF_OD=/Volumes/FENUA/ORCA2_LIM_nemo_v2_IO |
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19 | |
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20 | # Arguments |
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21 | # type = 'long' or '1_short' or '2_short' |
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22 | type=$1 |
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23 | |
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24 | case ${type} in |
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25 | 'long' ) |
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26 | DIROUT='LONG' |
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27 | ITERATIONS=210 |
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28 | NOUTPUT=75 ;; |
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29 | |
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30 | '1_short' ) |
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31 | DIROUT='1_SHORT' |
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32 | ITERATIONS=105 |
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33 | NOUTPUT=75 ;; |
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34 | |
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35 | '2_short' ) |
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36 | DIROUT='2_SHORT' |
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37 | ITERATIONS=105 |
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38 | NOUTPUT=75 ;; |
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39 | |
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40 | 'gtime' ) |
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41 | DIROUT='GTIME' |
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42 | ITERATIONS=5475 |
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43 | NOUTPUT=75 ;; |
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44 | esac |
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45 | |
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46 | # Working directory |
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47 | cd ${TMPDIR} |
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48 | |
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49 | ############################################################## |
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50 | ############################################################## |
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51 | ############################################################## |
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52 | ### Input files |
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53 | ############################################################## |
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54 | ############################################################## |
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55 | ############################################################## |
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56 | # Ocean namelist |
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57 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist namelist_f90 |
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58 | sed -e /!/d namelist_f90 > namelist |
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59 | |
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60 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/1_namelist 1_namelist_f90 |
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61 | sed -e /!/d 1_namelist_f90 > 1_namelist |
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62 | |
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63 | # Sea-Ice namelist |
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64 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/namelist_ice namelist_ice_f90 |
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65 | sed -e /!/d namelist_ice_f90 > namelist_ice |
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66 | |
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67 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/1_namelist_ice 1_namelist_ice_f90 |
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68 | sed -e /!/d 1_namelist_ice_f90 > 1_namelist_ice |
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69 | |
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70 | # AGRIF file |
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71 | cp ${MAINDIR}/modipsl/config/${CONF}/EXP00/AGRIF_FixedGrids.in AGRIF_FixedGrids.in |
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72 | |
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73 | for CHGFILE in `ls *namelist` |
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74 | do |
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75 | # namelist modifications |
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76 | PAT_NAMECF=$( grep 'cexper =' ${CHGFILE} ) |
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77 | PAT_NIT000=$( grep 'nit000 =' ${CHGFILE} ) |
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78 | PAT_NITEND=$( grep 'nitend =' ${CHGFILE} ) |
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79 | PAT_NSTOCK=$( grep 'nstock =' ${CHGFILE} ) |
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80 | PAT_NWRITE=$( grep 'nwrite =' ${CHGFILE} ) |
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81 | PAT_NRSTDT=$( grep 'nrstdt =' ${CHGFILE} ) |
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82 | PAT_NBITCM=$( grep 'nbit_cmp =' ${CHGFILE} ) |
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83 | PAT_TRACEN=$( grep 'ln_traadv_cen2 =' ${CHGFILE} ) |
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84 | PAT_TRATVD=$( grep 'ln_traadv_tvd =' ${CHGFILE} ) |
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85 | PAT_N_CLAA=$( grep 'n_cla =' ${CHGFILE} ) |
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86 | PAT_NSOLVV=$( grep 'nsolv =' ${CHGFILE} ) |
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87 | PAT_RESTAR=$( grep 'ln_rstart =' ${CHGFILE} ) |
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88 | PAT_RESMLD=$( grep 'ln_trdmld_restart =' ${CHGFILE} ) |
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89 | |
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90 | if [ ${CHGFILE} = 'namelist' ] ; then |
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91 | ORCA_NITEND=$(( $ITERATIONS )) |
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92 | ORCA_NSTOCK=$(( $NOUTPUT )) |
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93 | PAT_NAMECF_tmp=" cexper = \"${CONF}\"" |
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94 | else |
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95 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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96 | ORCA_NSTOCK=$(( $NOUTPUT*2 )) |
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97 | PAT_NAMECF_tmp="$PAT_NAMECF" |
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98 | fi |
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99 | |
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100 | sed -e "s/$PAT_RESTAR/ ln_rstart = .false./" \ |
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101 | -e "s/$PAT_NAMECF/$PAT_NAMECF_tmp/" \ |
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102 | -e "s/$PAT_NIT000/ nit000 = 1/" \ |
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103 | -e "s/$PAT_NITEND/ nitend = ${ORCA_NITEND}/" \ |
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104 | -e "s/$PAT_NSTOCK/ nstock = ${ORCA_NITEND}/" \ |
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105 | -e "s/$PAT_NWRITE/ nwrite = ${ORCA_NSTOCK}/" \ |
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106 | -e "s/$PAT_NRSTDT/ nrstdt = 0/" \ |
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107 | -e "s/$PAT_NBITCM/ nbit_cmp = 1/" \ |
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108 | -e "s/$PAT_TRACEN/ ln_traadv_cen2 = .false./" \ |
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109 | -e "s/$PAT_TRATVD/ ln_traadv_tvd = .true./" \ |
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110 | -e "s/$PAT_N_CLAA/ n_cla = 0/" \ |
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111 | -e "s/$PAT_NSOLVV/ nsolv = 2/" \ |
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112 | -e "s/$PAT_RESMLD/ ln_trdmld_restart = .false./" \ |
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113 | ${CHGFILE} > nam.$$ |
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114 | |
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115 | mv nam.$$ ${CHGFILE} && rm -f nam.$$ |
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116 | done |
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117 | |
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118 | # Get forcing files |
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119 | ${D_GET} ${D_INPUT}/ORCA2_LIM_nemo_v3.tar ORCA2_LIM_nemo_v3.tar |
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120 | tar xvf ORCA2_LIM_nemo_v3.tar |
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121 | rm -rf ORCA2_LIM_nemo_v3.tar |
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122 | |
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123 | # Get restarts files if needed |
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124 | if [ $type = '2_short' ] |
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125 | then |
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126 | if [ ${RUN} = 'mon' -o ${RUN} = 'omp' ] ; then |
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127 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*_restart.nc restart.nc |
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128 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart.nc 1_restart.nc |
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129 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*restart_ice.nc restart_ice_in.nc |
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130 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart_ice.nc 1_restart_ice_in.nc |
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131 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld.nc restart_mld.nc |
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132 | fi |
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133 | |
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134 | if [ ${RUN} = 'mpi' ] ; then |
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135 | typeset -Z4 i=0 |
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136 | while [ $i -lt $NB_PROCS ] |
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137 | do |
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138 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*_restart_${i}.nc restart_${i}.nc |
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139 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart_${i}.nc 1_restart_${i}.nc |
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140 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/ZAGRI*_restart_ice_${i}.nc restart_ice_in_${i}.nc |
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141 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/1_*restart_ice_${i}.nc 1_restart_ice_in_${i}.nc |
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142 | cp ${WORK}/NEMO_VALID/W${CONF}/${RUN}/1_SHORT/*_restart_mld_${i}.nc restart_mld_${i}.nc |
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143 | let i=$i+1 |
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144 | done |
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145 | fi |
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146 | |
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147 | for CHGFILE in `ls *namelist` |
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148 | do |
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149 | # namelist modifications |
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150 | PAT_NIT000=$( grep 'nit000 =' ${CHGFILE} ) |
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151 | PAT_NITEND=$( grep 'nitend =' ${CHGFILE} ) |
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152 | PAT_NRSTDT=$( grep 'nrstdt =' ${CHGFILE} ) |
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153 | PAT_RESTAR=$( grep 'ln_rstart =' ${CHGFILE} ) |
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154 | PAT_RESMLD=$( grep 'ln_trdmld_restart =' ${CHGFILE} ) |
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155 | |
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156 | if [ ${CHGFILE} = 'namelist' ] ; then |
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157 | ORCA_NIT000=$(( $ITERATIONS + 1 )) |
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158 | ORCA_NITEND=$(( $ITERATIONS*2 )) |
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159 | else |
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160 | ORCA_NIT000=$(( $ITERATIONS*2 + 1 )) |
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161 | ORCA_NITEND=$(( $ITERATIONS*4 )) |
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162 | fi |
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163 | |
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164 | sed -e "s/$PAT_RESTAR/ ln_rstart = .true./" \ |
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165 | -e "s/$PAT_NIT000/ nit000 = $ORCA_NIT000/" \ |
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166 | -e "s/$PAT_NITEND/ nitend = $ORCA_NITEND/" \ |
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167 | -e "s/$PAT_NRSTDT/ nrstdt = 2/" \ |
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168 | -e "s/$PAT_RESMLD/ ln_trdmld_restart = .true./" \ |
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169 | ${CHGFILE} > nam.$$ |
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170 | |
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171 | mv nam.$$ ${CHGFILE} && rm -f nam.$$ |
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172 | done |
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173 | |
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174 | fi |
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175 | |
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176 | ############################################################## |
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177 | ############################################################## |
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178 | ############################################################## |
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179 | ### Launch run |
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180 | ############################################################## |
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181 | ############################################################## |
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182 | ############################################################## |
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183 | |
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184 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_${RUN} opa_${CONF}_${RUN} |
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185 | cp ${WORK}/NEMO_VALID/W${CONF}/opa_${CONF}_memo opa_${CONF}_memo |
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186 | chmod 777 opa_${CONF}_${RUN} |
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187 | chmod 777 opa_${CONF}_memo |
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188 | |
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189 | # |
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190 | # Profiling & Executable memory size |
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191 | #################################### |
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192 | touch memory_size.txt |
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193 | |
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194 | case ${RUN} in |
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195 | 'mon' ) |
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196 | #-T- sx8brodie export F_PROGINF=detail |
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197 | #-T- sx8brodie echo "Stack memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt |
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198 | #-T- sx8brodie echo "Static memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt ;; |
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199 | #-T- aix ;; |
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200 | #-T- ax_mono echo "Stack memory: $( (size opa_${CONF}_memo) )" >> memory_size.txt |
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201 | #-T- ax_mono echo "Static memory: $( (size opa_${CONF}_${RUN}) )" >> memory_size.txt ;; |
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202 | 'mpi' ) |
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203 | #-T- sx8brodie export MPIPROGINF=detail ;; |
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204 | #-T- aix ;; |
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205 | #-T- ax_mono ;; |
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206 | 'omp' ) |
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207 | #-T- sx8brodie export F_PROGINF=detail |
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208 | #-T- sx8brodie export OMP_NUM_THREADS=${NB_PROCS} |
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209 | #-T- aix ;; |
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210 | #-T- ax_mono ;; |
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211 | esac |
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212 | # |
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213 | # >>>>>> EXECUTION < < < < |
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214 | ########################## |
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215 | |
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216 | case ${RUN} in |
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217 | 'mon' | 'omp' ) |
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218 | ${CPERF} ./opa_${CONF}_${RUN} ;; |
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219 | 'mpi' ) |
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220 | ${CPERF} ${LEXE} ./opa_${CONF}_${RUN} ;; |
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221 | esac |
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222 | |
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223 | ls -l |
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224 | # |
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225 | |
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226 | ############################################################## |
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227 | ############################################################## |
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228 | ############################################################## |
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229 | ### Save output files |
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230 | ############################################################## |
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231 | ############################################################## |
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232 | ############################################################## |
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233 | case ${RUN} in |
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234 | 'mon' | 'omp' ) |
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235 | liste_files=' *abort* memory* *namelist* perfs* solver.stat ocean.output 1_Agulhas* layout* ZAGRIF* restart* mono*' ;; |
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236 | 'mpi' ) |
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237 | liste_files=' *abort* *namelist* solver.stat perfs* ocean.output* layout* 1_Agulhas* ZAGRIF* restart* mpp*' ;; |
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238 | esac |
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239 | |
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240 | # Ensure that all files saved are coming from the current run |
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241 | ind=1 |
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242 | for k in $liste_files |
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243 | do |
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244 | echo $k > temp |
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245 | var=$( ( awk '{printf("%-.4s", varin ) } ' varin=$k temp ) ) |
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246 | if [ ${ind} = 1 -a ${var} = 'perf' ] ; then |
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247 | kc='perf*' |
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248 | rm -f ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/${kc} |
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249 | ind=0 |
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250 | fi |
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251 | cp $k ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/$k |
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252 | done |
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253 | |
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254 | ############################################################## |
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255 | ############################################################## |
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256 | ############################################################## |
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257 | ### Retrieve some reference run files |
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258 | ############################################################## |
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259 | ############################################################## |
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260 | ############################################################## |
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261 | if [ ${REF_TAG} ] |
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262 | then |
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263 | STORE_DATA=${REF_OD}/${CONF}/${REF_TAG}/${RUN}/${DIROUT} |
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264 | LFILES="solver.stat memory_size.txt ocean.output ${RUN}${CONF}_err" |
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265 | for ref_file in ${LFILES} |
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266 | do |
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267 | ${D_GET} ${STORE_DATA}/${TSYMB}${ref_file} ${WORK}/NEMO_VALID/W${CONF}/${RUN}/${DIROUT}/REF/${ref_file} |
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268 | done |
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269 | fi |
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270 | |
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271 | ############################################################## |
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272 | ############################################################## |
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273 | ############################################################## |
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274 | ### Launch restart job |
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275 | ############################################################## |
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276 | ############################################################## |
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277 | ############################################################## |
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278 | if [ $type = '1_short' ] ; then |
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279 | cd ${WORK}/NEMO_VALID/W${CONF}/${RUN}/2_SHORT |
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280 | ${LAUNCH}job_${RUN}_2_short.ksh |
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281 | fi |
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