source: utils/CI/sette/BATCH_TEMPLATE/batch-X64_MOBILIS @ 10631

Last change on this file since 10631 was 10631, checked in by smueller, 2 years ago

Slight SETTE enhancement to improve the reliability of restartability and reproducibility tests; see ticket #2226

File size: 3.4 KB
Line 
1#!/bin/bash
2#SBATCH -N NODES
3#SBATCH --time=03:59:00
4
5module purge
6module load shared
7module load gcc
8module load noc/intel/17.0.4
9module load openmpi/intel/64/1.6.5
10module load slurm/16.05.8
11module load noc/subversion/1.7.16
12
13#
14  export OMP_NUM_THREADS=1
15  export OCORES=NPROCS
16  export XCORES=NXIOPROCS
17  export SETTE_DIR=DEF_SETTE_DIR
18  export XIO_HOME=/hpcdata/working/smueller/xios-2.5
19#
20# load sette functions (only post_test_tidyup needed)
21#
22  . ${SETTE_DIR}/all_functions.sh
23###############################################################
24#
25# set up mpp computing environment
26#
27#
28# Local settings. These settings are for a particular machine (the MOBILIS ClusterVision
29# system at NOCS) at a particular stage of that machine's evolution. This template file
30# is provided for illustration purposes only and will not work on any other machine. There
31# should, however, be sufficient similarity with other MPP platforms and batch systems
32# for this example to provide a useful guide for experienced users
33#
34# Don't remove neither change the following line
35# BODY
36#
37# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
38# (via sed operating on this template job file). Note that the number of compute nodes required
39# is also set by the fcm_job.sh on the PBS select header line above.
40#
41# These variables are needed by post_test_tidyup function in all_functions.sh
42#
43  export INPUT_DIR=DEF_INPUT_DIR
44  export CONFIG_DIR=DEF_CONFIG_DIR
45  export TOOLS_DIR=DEF_TOOLS_DIR
46  export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION
47  export NEW_CONF=DEF_NEW_CONF
48  export CMP_NAM=DEF_CMP_NAM
49  export TEST_NAME=DEF_TEST_NAME
50  export EXE_DIR=DEF_EXE_DIR
51#
52# end of set up
53###############################################################
54#
55# change to the working directory
56#
57  cd $EXE_DIR
58  echo Directory is `pwd`
59  if [ $XCORES -eq 0 ]; then
60#
61# Run SPMD case
62#
63       echo time `which mpirun` --report-bindings -x MALLOC_MMAP_MAX_=-1                 \
64                                -x MALLOC_TRIM_THRESHOLD_=33554432 -np $OCORES --bynode  \
65                                --mca mpi_paffinity_alone 1 ./nemo
66            time `which mpirun` --report-bindings -x MALLOC_MMAP_MAX_=-1                 \
67                                -x MALLOC_TRIM_THRESHOLD_=33554432 -np $OCORES --bynode  \
68                                --mca mpi_paffinity_alone 1 ./nemo
69  else
70       if [ ! -f ./xios_server.exe ] && [ -f ${XIO_HOME}/bin/xios_server.exe ]; then
71          cp ${XIO_HOME}/bin/xios_server.exe .
72       fi
73       if [ ! -f ./xios_server.exe ]; then
74          echo "./xios_server.exe not found"
75          echo "run aborted"
76          exit
77       fi
78#
79#  Run MPMD case
80#
81       echo time `which mpirun` --report-bindings -x MALLOC_MMAP_MAX_=-1 \
82                                -x MALLOC_TRIM_THRESHOLD_=33554432       \
83                                -np $XCORES ./xios_server.exe            \
84                              : -np $OCORES --bynode  --mca mpi_paffinity_alone 1 ./nemo
85#
86            time `which mpirun` --report-bindings -x MALLOC_MMAP_MAX_=-1 \
87                                -x MALLOC_TRIM_THRESHOLD_=33554432       \
88                                -np $XCORES ./xios_server.exe            \
89                              : -np $OCORES --bynode  --mca mpi_paffinity_alone 1 ./nemo
90#
91  fi
92#
93  post_test_tidyup
94# END_BODY
95# Don't remove neither change the previous line
96  exit
Note: See TracBrowser for help on using the repository browser.