source: utils/CI/sette/BATCH_TEMPLATE/batch-ifort_beaufix_sette @ 12798

#!/usr/bin/env bash

#SBATCH -J sette
#SBATCH -o sette.%j.out
#SBATCH -e sette.%j.err
#SBATCH --export=ALL
#SBATCH --parsable
#SBATCH --exclusive
#SBATCH --nodes=NODES
#SBATCH --time=00:15:00

##SBATCH -p debug64
##SBATCH -A smer
##SBATCH --qos=debug

#SBATCH -p normal64
##SBATCH -A cmems
##SBATCH --qos=coper


# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file). 
#
  export XIO_HOME="/home/ext/mr/smer/samsong/SRC/XIOS/xios-2.5/MET_INTEL16_r1859"
  export SETTE_DIR="DEF_SETTE_DIR"

  # DEFAULT NEMO/XIOS PROC NUMBER PER NODE
  O_PER_NODE=38
  X_PER_NODE=2

  # REQUESTED TOTAL NEMO/XIOS PROC NUMBER
  OCORES=NPROCS
  XCORES=NXIOPROCS

  # AVAILABLE PER NODE & TOTAL PROC NUMBER
  A_PER_NODE=$((SLURM_CPUS_ON_NODE/2))
  ACORES=$((SLURM_CPUS_ON_NODE/2*SLURM_JOB_NUM_NODES))

  # ADJUST PROC PER NODE
  if [ $OCORES -le $O_PER_NODE ]; then O_PER_NODE=$OCORES; fi
  if [ $XCORES -gt $X_PER_NODE ]; then X_PER_NODE=$((A_PER_NODE-O_PER_NODE)); fi

  # TOTAL NEMO/XIOS PROC NUMBER
  OCORES=$(( O_PER_NODE * SLURM_JOB_NUM_NODES ))
  XCORES=$(( X_PER_NODE * SLURM_JOB_NUM_NODES ))
  TCORES=$(( OCORES + XCORES ))

  # CHECK PROC PER NODE + CHECK TOTAL PROC
  if [[ $((O_PER_NODE+X_PER_NODE)) -gt $((SLURM_CPUS_ON_NODE/2)) ]] || [[ ${TCORES} -gt ${ACORES} ]]; then
    exit 1
  else
    echo "OCORES: $OCORES"
    echo "XCORES: $XCORES"
  fi


###############################################################
#
#
# load sette functions (only post_test_tidyup needed)
#
  . ${SETTE_DIR}/all_functions.sh
###############################################################
#
# modules to load
#module purge
#module load intel/16.1.150
#module load intelmpi/5.1.2.150
#module load netcdf/4.4.0
#module load hdf5/1.8.16
#module load zlib/1.2.8 szip/2.1

# Don't remove neither change the following line
# BODY
#
# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file). Note that the number of compute nodes required
# is also set by the fcm_job.sh on the PBS select header line above.
#
# These variables are needed by post_test_tidyup function in all_functions.sh
#
  export INPUT_DIR=DEF_INPUT_DIR
  export CONFIG_DIR=DEF_CONFIG_DIR
  export TOOLS_DIR=DEF_TOOLS_DIR
  export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION
  export NEW_CONF=DEF_NEW_CONF
  export CMP_NAM=DEF_CMP_NAM
  export TEST_NAME=DEF_TEST_NAME
  export EXE_DIR=DEF_EXE_DIR
  ulimit -a
  ulimit -s unlimited
#
# end of set up
###############################################################
#
# change to the working directory 
#
  cd $EXE_DIR

  echo Running on host `hostname`
  echo Time is `date`
  echo Directory is `pwd`
# 
#  Run the parallel MPI executable 
#
  if [ $XCORES -gt 0 ]; then
#
#  Run MPMD case
#
     #XIOS will run on a separate node so will run in parallel queue
     if [ ! -f ./xios_server.exe ] && [ -f ${XIO_HOME}/bin/xios_server.exe ]; then
        cp ${XIO_HOME}/bin/xios_server.exe .
     fi
     if [ ! -f ./xios_server.exe ]; then
        echo "./xios_server.exe not found"
        echo "run aborted"
        exit
     fi

    cat > mpmd.conf <<EOF
0-$((OCORES-1)) ./nemo
${OCORES}-$((TCORES-1)) ./xios_server.exe
EOF
     echo time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${TCORES} --multi-prog ./mpmd.conf
          time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${TCORES} --multi-prog ./mpmd.conf
#
  else
#
# Run SPMD case
#
    echo time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${OCORES} ./nemo
         time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${OCORES} ./nemo
  fi
#

#
  post_test_tidyup
# END_BODY
# Don't remove neither change the previous line
  exit