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all_functions.sh

Last change on this file was 14981, checked in by acc, 3 years ago
#2673 . Reintegrate sette developments back onto main sette branch. This action closes #2673
Property svn:executable set to ``* Property svn:keywords set to `Id`
File size: 22.8 KB

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1	######################################################
2	# Author : Simona Flavoni for NEMO
3	# Contact : sflod@locean-ipsl.upmc.fr
4	#
5	# ----------------------------------------------------------------------
6	# NEMO/SETTE , NEMO Consortium (2010)
7	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
8	# ----------------------------------------------------------------------
9	#
10	# Some scripts called by sette.sh
11	# all_functions.sh : all functions used by sette.sh
12	######################################################
13	#set -x
14	#set -o posix
15	#set -u
16	#set -e
17	#+
18	#
19	# ================
20	# all_functions.sh
21	# ================
22	#
23	# ----------------------------------------------
24	# Set of functions used by sette.sh (NEMO tests)
25	# ----------------------------------------------
26	#
27	# SYNOPSIS
28	# ========
29	#
30	# ::
31	#
32	# $ ./set_namelist INPUT_NAMELIST VARIABLE VALUE
33	# $ post_test_tidyup
34	#
35	#
36	# DESCRIPTION
37	# ===========
38	#
39	# function superegrep
40	# input variable value
41	#
42	# function set_namelist
43	# input namelist_name variable value
44	# output namelist
45	#
46	# function post_test_tidyup
47	# creates nemo_validation tree, and save output & debug files
48	# this function creates tree of validation in NEMO_VALIDATION_DIR as follows :
49	#
50	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/REVISION_NUMBER(or DATE)/TEST_NAME
51	#
52	# NEMO_VALIDATION_DIR : is choosen in param.cfg
53	#
54	# WCONFIG_NAME : set by makenemo at the moment of compilation
55	#
56	# WCOMPILER_NAME : set by makenemo at the moment of compilation
57	#
58	# REVISION_NUMBER(or DATE) : revision number by svn info, if problems with svn date is taken
59	#
60	# TEST_NAME : set in sette.sh for each configuration to be tested (directory TEST_NAME is created under ${NEW_CONF} directory )
61	#
62	# EXAMPLES
63	# ========
64	#
65	# ::
66	#
67	# $ ./set_namelist namelist nn_itend 75
68	# $ ./set_namelist namelist_ice cn_icerst_in \"00101231_restart_ice\"
69	# $ post_test_tidyup
70	#
71	#
72	# TODO
73	# ====
74	#
75	# option debug
76	#
77	#
78	# EVOLUTIONS
79	# ==========
80	#
81	# $Id$
82	#
83	# * creation
84	#-
85	# function to find namelists parameters
86	supergrep () {
87	grep "^ $1 =" $2 \| sed -e "s% \!.%%"
88	}
89
90	usage=" Usage : set_namelist input_namelist variable_name value"
91	usage=" if value is a string ths is neede syntax : ./set_namelist namelist_name var_name \"new_value\" "
92
93	# sync MYSRC files (input CFG and CFG_STg; where g is an optional, single, alphanumeric character)
94	sync_config() {
95	if [ ${SYNC_CONFIGS} == "yes" ]; then
96
97	lREF=$3/$1 # reference
98	lCFG=$3/$2 # target
99
100	echo '-------------------------------------------------------------------------------'
101	echo ' SOURCE AND CONFIG FILES SYNCHRONISATION '
102	echo ''
103	echo "configuration $lCFG/MY_SRC will be synchronised with $lREF/MY_SRC"
104	echo ''
105	# synchronise MY_SRC if $lCFG directory exist
106	if [ -d $lREF/MY_SRC ] && [ -d $lCFG ] ; then
107
108	if [ -d $lCFG/MY_SRC ] ; then
109
110	# Manage case number of file in MY_SRC changes
111	# find number of file only in $lCFG/MY_SRC
112	FCFG=`diff -r $lREF/MY_SRC $lCFG/MY_SRC \| grep "Only in $lCFG/MY_SRC" \| awk '{print $4}'`
113
114	# if more than 0, trigger a cleaning as Makenemo do not properly manage this case.
115	if [ ! -z "$FCFG" ]; then
116	echo ''
117	echo "$lCFG contains a different file list than $lREF :"
118	diff -r $lREF/MY_SRC $lCFG/MY_SRC \| grep "Only in $lCFG/MY_SRC" \| awk '{print $4}'
119	echo "Synchronisation is not enough because Makenemo does not handle well case where a file in MY_SRC is removed"
120	echo "Therefore, we need to clean $lCFG before starting runing it"
121	echo ''
122	CLEAN_CONFIGS="yes"
123	fi
124	fi
125
126	# synchronisation $lREF/MY_SRC directory (and delete file in target location if needed)
127	rsync -a --delete $lREF/MY_SRC/ $lCFG/MY_SRC
128
129	# rsync keep preserve the modification time stamp.
130	# To avoid case where a file in MY_SRC is replace by an older file, we touch the file
131	touch --no-create $lCFG/MY_SRC/*
132	fi
133
134	echo ''
135	echo "configuration $lCFG/EXP00 will be synchronised with $lREF/EXPREF"
136	echo "(links are skipped)"
137	echo ''
138	# synchronize EXPREF
139	if [ -d $lREF/EXPREF ] && [ -d $lCFG/EXP00 ] ; then
140	rsync -a --no-links $lREF/EXPREF/ $lCFG/EXP00/.
141	fi
142	echo '-------------------------------------------------------------------------------'
143	fi
144	}
145
146	# clean _STg config (input CFG CFG_STg TYPE (test or ref))
147	clean_config() {
148	if [ ${CLEAN_CONFIGS} == "yes" ]; then
149	lREF=$1
150	lCFG=$2
151	lTYP=$3
152	echo ''
153	echo '-------------------------------------------------------------------------------'
154	echo ' CLEANING CONFIGURATION '
155	echo ''
156	echo "./makenemo -n $lCFG -a/-r $lREF clean"
157	echo ''
158	if [ ${lTYP} == 'tests' ]; then
159	./makenemo -n $lCFG -a $lREF clean
160	elif [ ${lTYP} == 'cfgs' ]; then
161	./makenemo -n $lCFG -r $lREF clean
162	else
163	echo 'ERROR in the cleaning process'; exit 42
164	fi
165	echo ''
166	echo "$lCFG configuration has been cleaned"
167	echo ''
168	echo '-------------------------------------------------------------------------------'
169	fi
170	}
171
172	# define validation dir
173	set_valid_dir () {
174	REVISION_NB=`${SVN_CMD} info ${SETTE_DIR}/.. \| grep "Last Changed Rev" \| awk '{print $NF}'`
175	if [ ${#REVISION_NB} -eq 0 ]
176	then
177	echo "some problems with ${SVN_CMD} info command"
178	echo "some problems with ${SVN_CMD} info command" >> ${SETTE_DIR}/output.sette
179	REVISION_NB=`date +%Y%m%d`
180	echo "put in ${REVISION_NB} date"
181	echo "put in ${REVISION_NB} date" >> ${SETTE_DIR}/output.sette
182	else
183	echo "value of revision number of NEMOGCM: ${REVISION_NB}"
184	fi
185	[ `${SVN_CMD} status -q ${SETTE_DIR}/../{cfgs,tests,src} \| wc -l` -ge 1 ] && REVISION_NB=${REVISION_NB}+
186	# remove last _ST followed by zero or more alphanumeric characters
187	NEW_CONF1=$( echo $NEW_CONF \| sed -e 's/_ST$[0-9a-zA-Z]*$$//' )
188	export NEMO_VALID=${NEMO_VALIDATION_DIR}/${CMP_NAM}/${REVISION_NB}/${NEW_CONF1}/${TEST_NAME}
189	}
190
191	# clean valid dir (move old ocean_output/run.stat and tracer to avoid checking them in case something wrong happen.
192	clean_valid_dir () {
193	# set_valid_dir # already done in sette_ref/sette_test
194	echo "validation directory is : $NEMO_VALID"
195	if [ -d $NEMO_VALID ] ; then
196	[ -f ${NEMO_VALID}/ocean.output ] && mv ${NEMO_VALID}/ocean.output ${NEMO_VALID}/ocean.output_old
197	[ -f ${NEMO_VALID}/run.stat ] && mv ${NEMO_VALID}/run.stat ${NEMO_VALID}/run.stat_old
198	[ -f ${NEMO_VALID}/tracer.stat ] && mv ${NEMO_VALID}/tracer.stat ${NEMO_VALID}/tracer.stat_old
199	fi
200	}
201
202	# set_namelist_opt: function to set namelists parameters based on a yes/no selection
203	# Mandatory arguments are, in order:
204	# 1. namelist to be edited
205	# 2. variable to be set
206	# 3. yes or no switch setting
207	# 4. value to set variable to if switch is yes
208	# 5. value to set variable to if switch is no
209	set_namelist_opt () {
210	minargcount=5
211	if [ ${#} -lt ${minargcount} ]
212	then
213	echo "not enough arguments for set_namelist_opt" >> ${SETTE_DIR}/output.sette
214	echo "Usage: set_namelist_opt namelist varname yes_or_no value_if_yes value_if_no" >> ${SETTE_DIR}/output.sette
215	exit 1
216	fi
217	unset minargcount
218	if [ $3 != 'yes' ] && [ $3 != 'no' ] ; then
219	echo 'option switch must be "yes" or "no"' >> ${SETTE_DIR}/output.sette
220	echo "${usage}" >> ${SETTE_DIR}/output.sette
221	exit 1
222	fi
223	if [ $3 == 'yes' ] ; then
224	set_namelist $1 $2 $4
225	else
226	set_namelist $1 $2 $5
227	fi
228	}
229
230	# set_namelist: function to set namelists parameters
231	set_namelist () {
232	minargcount=3
233	if [ ${#} -lt ${minargcount} ]
234	then
235	echo "not enough arguments for set_namelist"
236	echo "${usage}"
237	exit 1
238	fi
239	unset minargcount
240	if [ ! -f ${SETTE_DIR}/output.sette ] ; then
241	touch ${SETTE_DIR}/output.sette
242	fi
243
244	echo "executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette
245	echo "################" >> ${SETTE_DIR}/output.sette
246
247	VAR_NAME=$( supergrep $2 ${EXE_DIR}/$1 )
248	if [ ${#VAR_NAME} -eq 0 ]
249	then
250	echo "doing \"set_namelist $@\". " >> ${SETTE_DIR}/output.sette
251	echo "variable: \"$2\" not found in \"${EXE_DIR}/$1\" " >> ${SETTE_DIR}/output.sette
252	NAMREF=$( basename $1 _cfg )_ref
253	echo "doing more : search in ${EXE_DIR}/$NAMREF " >> ${SETTE_DIR}/output.sette
254	VAR_NAME=$( supergrep $2 ${EXE_DIR}/$NAMREF )
255	if [ ${#VAR_NAME} -eq 0 ]
256	then
257	echo " variable $VAR_NAME not found in ${EXE_DIR}/$1 nor in ${EXE_DIR}/$NAMREF "
258	echo " check your variable name "
259	echo "exit"
260	echo "error in executing script : set_namelist $@" >> ${SETTE_DIR}/output.sette
261	echo "....." >> ${SETTE_DIR}/output.sette
262	exit 1
263	fi
264	LINEVAR=$( grep -s -n "$VAR_NAME" ${EXE_DIR}/$NAMREF \| awk -F: '{ { print $1} }' )
265	echo " $VAR_NAME found in ${EXE_DIR}/$NAMREF at line $LINEVAR " >> ${SETTE_DIR}/output.sette
266
267	# search for namelist group name
268	NAMGRP=$( head -n$LINEVAR ${EXE_DIR}/$NAMREF \| grep --line-buffered "^&nam" \| tail -1 \| awk -F" " '{ { print $1} }' )
269	echo " variable $VAR_NAME will be added in $NAMGRP namelist-group of namelist file ${EXE_DIR}/$1 " >> ${SETTE_DIR}/output.sette
270
271	# check if namelist group present in namelist_cfg
272	# if missing group is added at the end of namelist_cfg
273	NGRP=$(grep ${NAMGRP} ${EXE_DIR}/$1 \| wc -l )
274	if [ ${NGRP} -eq 0 ]; then
275	echo '' >> ${SETTE_DIR}/output.sette
276	echo "+++++ Group ${NAMGRP} containing ${2} is missing in ${EXE_DIR}/$1 +++++ " >> ${SETTE_DIR}/output.sette
277	echo "+++++ Group ${NAMGRP} is added in ${EXE_DIR}/$1 +++++ " >> ${SETTE_DIR}/output.sette
278	echo '' >> ${SETTE_DIR}/output.sette
279	echo "${NAMGRP}" >> ${EXE_DIR}/$1
280	echo "/" >> ${EXE_DIR}/$1
281	fi
282
283	# Add $VARNAME in namelist file ${EXE_DIR}/$1 in namelist group $NAMGRP
284	# on mac osx, replace sed --posix by gsed (available with mac port)
285	sed --posix "/${NAMGRP} /a\ ${VAR_NAME} " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp \|\| gsed --posix "/${NAMGRP} /a\ ${VAR_NAME} " ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
286
287	# if file not empty replace ${EXE_DIR}/$1
288	if [ -s ${EXE_DIR}/$1.tmp ] ; then
289	mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
290	else
291	echo "file ${EXE_DIR}/$1.tmp is empty. sed command went wrong "; exit 200
292	fi
293	fi
294
295	ARGS_LST="${@:3}"
296	sed -e "s;${VAR_NAME}.*;${VAR_NAME};" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
297	mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
298	sed -e "s;${VAR_NAME};$2=${ARGS_LST};" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
299	mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
300
301	echo "finished script : set_namelist $@" >> ${SETTE_DIR}/output.sette
302	echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette
303	echo " " >> ${SETTE_DIR}/output.sette
304	}
305
306
307	# function to tidy up after each test and populate the NEMO_VALIDATION store
308	post_test_tidyup () {
309	# Save current exit status of caller script
310	RUN_STATUS=$?
311	echo "Exit status: ${RUN_STATUS}"
312	#
313	# requires the following variables defined and exported from the calling script:
314	# SETTE_DIR
315	# INPUT_DIR
316	# EXE_DIR
317	# CONFIG_DIR
318	# NEMO_VALIDATION_DIR
319	# NEW_CONF
320	# CMP_NAM
321	# TEST_NAME
322	echo "SETTE directory is : ${SETTE_DIR}"
323	echo "INPUT directory is : ${INPUT_DIR}"
324	echo "EXECUTION directory is : ${EXE_DIR}"
325	echo "CONFIG directory is : ${CONFIG_DIR}"
326	echo "VALIDATION directory is : ${NEMO_VALID}"
327	echo "NEW CONFIGURATION is : ${NEW_CONF}"
328	echo "COMPILER is : ${CMP_NAM}"
329	echo "TEST is : ${TEST_NAME}"
330	echo "TOOLS directory is : ${TOOLS_DIR}"
331	################################################################
332	# SMALL DEBUG
333	EXIT_STATUS=${RUN_STATUS}
334	if [ ! -r ${EXE_DIR}/ocean.output ]
335	then
336	grep "E R R O R" ${EXE_DIR}/ocean.output && echo "Some ERRORS at execution time, see ${EXE_DIR}/ocean.output"
337	EXIT_STATUS=2
338	# exit 2 Error now catch in the report
339	fi
340
341	if [ ! -r ${EXE_DIR}/time.step ]
342	then
343	echo "file time.step does not exist" >> ${SETTE_DIR}/output.sette
344	echo "some problems during execution of model" >> ${SETTE_DIR}/output.sette
345	EXIT_STATUS=1
346	# exit 1 Error now catch in the report
347	else
348	echo "file time.step exists" >> ${SETTE_DIR}/output.sette
349	echo "execution of model time step loop started" >> ${SETTE_DIR}/output.sette
350	fi
351
352	################################################################
353
354	################################################################
355	#
356	# Creation of NEMO_VALIDATION tree
357	# set_valid_dir already done in sette_reference_config
358	mkdir -p ${NEMO_VALIDATION_DIR}
359	if [ -d ${NEMO_VALIDATION_DIR} ] ; then
360	echo "created ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
361	else
362	echo "problems in creating ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
363	echo "EXIT,"
364	exit 1
365	fi
366	#
367	# Exit before populating validation directory if the model run has
368	# returned a non-zero exit status
369	# On CRAY NEMO exit is not the expected 999 or 123456 (let this bloc in case useful later on).
370	# case ${EXIT_STATUS} in
371	# 0\|123456\|999) echo " NEMO finished with exit code $EXIT_STATUS " ; post_test_tidyup ;;
372	# *) echo " NEMO abort on an unexpected error (segmentation fault or whatever) $EXIT_STATUS "
373	# esac
374
375	[ ${EXIT_STATUS} -ne 0 ] && exit ${EXIT_STATUS}
376	#
377	# Save output & debug files in NEMO_VALIDATION tree
378	echo "saving ocean & ice output, run.stat, tracer.stat files ...." >> ${SETTE_DIR}/output.sette
379	echo " " >> ${SETTE_DIR}/output.sette
380	[ -f ${EXE_DIR}/ocean.output ] && cp ${EXE_DIR}/*ocean.output ${NEMO_VALIDATION_DIR}/.
381	[ -f ${EXE_DIR}/run.stat ] && cp ${EXE_DIR}/*run.stat ${NEMO_VALIDATION_DIR}/.
382	[ -f ${EXE_DIR}/output.namelist.dyn ] && cp ${EXE_DIR}/output.nam ${NEMO_VALIDATION_DIR}/.
383	[ -f ${EXE_DIR}/namelist_cfg ] && cp ${EXE_DIR}/nam_cfg ${NEMO_VALIDATION_DIR}/.
384	[ -f ${EXE_DIR}/tracer.stat ] && cp ${EXE_DIR}/*tracer.stat ${NEMO_VALIDATION_DIR}/.
385	[ -f ${EXE_DIR}/timing.output ] && cp ${EXE_DIR}/*timing.output ${NEMO_VALIDATION_DIR}/.
386	[ -f ${EXE_DIR}/sette_config ] && cp ${EXE_DIR}/sette_config ${NEMO_VALIDATION_DIR}/.
387
388	if [ -n "$(ls ${NEMO_VALIDATION_DIR}/run)" ] ; then
389	echo "moved run.stat in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
390	echo "moved run.stat in ${NEMO_VALIDATION_DIR} directory"
391	else
392	echo "problem in looking for run.stat file in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
393	echo "run.stat IS NOT in ${NEMO_VALIDATION_DIR} directory"
394	fi
395	if [ -n "$(ls ${NEMO_VALIDATION_DIR}/ocean.output)" ] ; then
396	echo "moved ocean.output in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
397	echo "moved ocean.output in ${NEMO_VALIDATION_DIR} directory"
398	else
399	echo "problem in looking for ocean.output file in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
400	echo "ocean.output IS NOT in ${NEMO_VALIDATION_DIR} directory"
401	fi
402	if [ -n "$(ls ${NEMO_VALIDATION_DIR}/tracer.stat)" ] ; then
403	echo "moved tracer.stat in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
404	echo "moved tracer.stat in ${NEMO_VALIDATION_DIR} directory"
405	else
406	echo "problem in looking for tracer.stat file in ${NEMO_VALIDATION_DIR} directory" >> ${SETTE_DIR}/output.sette
407	echo "tracer.stat IS NOT in ${NEMO_VALIDATION_DIR} directory"
408	fi
409	}
410
411	#############################################################
412	# extra functions to manipulate settings in the iodef.xml file
413	#
414	# Examples:
415	# set_xio_file_type iodef.xml one_file
416	# set_xio_using_server iodef.xml true
417	# set_xio_buffer_size iodef.xml 50000000
418	# set_xio_field_defs iodef.xml
419	#
420	#############################################################
421
422	usage2=" Usage : set_xio_file_type input_iodef.xml one_file\|\|multiple_file"
423	usage3=" Usage : set_xio_using_server input_iodef.xml true\|\|false"
424	usage4=" Usage : set_xio_buffer_size input_iodef.xml int_buffer_size"
425	usage5=" Usage : set_xio_field_defs input_iodef.xml"
426
427	set_xio_file_type () {
428	minargcount=2
429	if [ ${#} -lt ${minargcount} ]
430	then
431	echo "not enough arguments for set_xio_file_type"
432	echo "${usage2}"
433	exit 1
434	fi
435	if [ $2 != "one_file" ] && [ $2 != "multiple_file" ]
436	then
437	echo "unrecognised argument for set_xio_file_type"
438	echo "${usage2}"
439	echo $2
440	exit 1
441	fi
442	unset minargcount
443	if [ ! -f ${SETTE_DIR}/output.sette ] ; then
444	touch ${SETTE_DIR}/output.sette
445	fi
446
447	echo "executing script : set_xio_file_type $@" >> ${SETTE_DIR}/output.sette
448	echo "################" >> ${SETTE_DIR}/output.sette
449
450	VAR_NAME=$( grep "^.<.file_definition.type.=" ${EXE_DIR}/$1 \| sed -e "s% \!.%%" )
451	if [ ${#VAR_NAME} -eq 0 ]
452	then
453	echo "doing \"set_xio_file_type $@\". "
454	echo "xml_tag: file_definition with variable: type is empty"
455	echo "confirm that an appropriate file_definition is in \"${EXE_DIR}/$1\" "
456	echo "exit"
457	echo "error in executing script : set_xio_file_type $@" >> ${SETTE_DIR}/output.sette
458	echo "....." >> ${SETTE_DIR}/output.sette
459	exit 1
460	fi
461	if [ $2 == "one_file" ]
462	then
463	sed -e "s:multiple_file:one_file:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
464	else
465	sed -e "s:one_file:multiple_file:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
466	fi
467	mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
468
469	echo "finished script : set_xio_file_type $@" >> ${SETTE_DIR}/output.sette
470	echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette
471	echo " " >> ${SETTE_DIR}/output.sette
472	}
473
474	set_xio_using_server () {
475	minargcount=2
476	if [ ${#} -lt ${minargcount} ]
477	then
478	echo "not enough arguments for set_xio_using_server"
479	echo "${usage2}"
480	exit 1
481	fi
482	inarg=$2
483	if [ ${inarg} == "yes" ] ; then inarg="true" ; fi
484	if [ ${inarg} == "no" ] ; then inarg="false" ; fi
485	if [ ${inarg} != "true" ] && [ ${inarg} != "false" ]
486	then
487	echo "unrecognised argument for set_xio_using_server"
488	echo "${usage2}"
489	echo ${inarg}
490	exit 1
491	fi
492	unset minargcount
493	if [ ! -f ${SETTE_DIR}/output.sette ] ; then
494	touch ${SETTE_DIR}/output.sette
495	fi
496
497	echo "executing script : set_xio_using_server $@" >> ${SETTE_DIR}/output.sette
498	echo "################" >> ${SETTE_DIR}/output.sette
499
500	VAR_NAME=$( grep "^.<.variable id.=.using_server.=.bool" ${EXE_DIR}/$1 \| sed -e "s% \!.%%" )
501	if [ ${#VAR_NAME} -eq 0 ]
502	then
503	echo "doing \"set_xio_using_server $@\". "
504	echo "xml_tag: "variable id=using_server" with variable: bool is empty"
505	echo "confirm that an appropriate variable id is in \"${EXE_DIR}/$1\" "
506	echo "exit"
507	echo "error in executing script : set_xio_using_server $@" >> ${SETTE_DIR}/output.sette
508	echo "....." >> ${SETTE_DIR}/output.sette
509	exit 1
510	fi
511	if [ ${inarg} == "false" ]
512	then
513	sed -e "/using_server/s:true:false:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
514	export USING_MPMD=no
515	else
516	sed -e "/using_server/s:false:true:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
517	export USING_MPMD=yes
518	fi
519	mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
520
521	echo "finished script : set_xio_using_server $@" >> ${SETTE_DIR}/output.sette
522	echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette
523	echo " " >> ${SETTE_DIR}/output.sette
524	}
525
526	set_xio_buffer_size () {
527	minargcount=2
528	if [ ${#} -lt ${minargcount} ]
529	then
530	echo "not enough arguments for set_xio_buffer_size"
531	echo "${usage4}"
532	exit 1
533	fi
534	unset minargcount
535	if [ ! -f ${SETTE_DIR}/output.sette ] ; then
536	touch ${SETTE_DIR}/output.sette
537	fi
538
539	echo "executing script : set_xio_buffer_size $@" >> ${SETTE_DIR}/output.sette
540	echo "################" >> ${SETTE_DIR}/output.sette
541
542	VAR_NAME=$( grep "^.<.variable id.=.buffer_size.=.integer" ${EXE_DIR}/$1 \| sed -e "s% \!.%%" )
543	if [ ${#VAR_NAME} -eq 0 ]
544	then
545	echo "doing \"set_xio_buffer_size $@\". "
546	echo "xml_tag: "variable id=buffer_size" with variable: integer is empty"
547	echo "confirm that an appropriate variable id is in \"${EXE_DIR}/$1\" "
548	echo "exit"
549	echo "error in executing script : set_xio_buffer_size $@" >> ${SETTE_DIR}/output.sette
550	echo "....." >> ${SETTE_DIR}/output.sette
551	exit 1
552	fi
553	sed -e "/buffer_size/s:>.*<:>$2<:" ${EXE_DIR}/$1 > ${EXE_DIR}/$1.tmp
554	mv ${EXE_DIR}/$1.tmp ${EXE_DIR}/$1
555
556	echo "finished script : set_xio_buffer_size $@" >> ${SETTE_DIR}/output.sette
557	echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette
558	echo " " >> ${SETTE_DIR}/output.sette
559	}
560
561	set_xio_field_defs () {
562	minargcount=1
563	if [ ${#} -lt ${minargcount} ]
564	then
565	echo "not enough arguments for set_xio_field_defs"
566	echo "${usage5}"
567	exit 1
568	fi
569	unset minargcount
570	if [ ! -f ${SETTE_DIR}/output.sette ] ; then
571	touch ${SETTE_DIR}/output.sette
572	fi
573
574	echo "executing script : set_xio_field_defs $@" >> ${SETTE_DIR}/output.sette
575	echo "################" >> ${SETTE_DIR}/output.sette
576
577
578	[ -f ${EXE_DIR}/field_def_nemo-oce.xml ] \|\| sed -i '/field_def_nemo-oce/d' $1
579	[ -f ${EXE_DIR}/field_def_nemo-ice.xml ] \|\| sed -i '/field_def_nemo-ice/d' $1
580	[ -f ${EXE_DIR}/field_def_nemo-pisces.xml ] \|\| sed -i '/field_def_nemo-pisces/d' $1
581
582	echo "finished script : set_xio_field_defs $@" >> ${SETTE_DIR}/output.sette
583	echo "++++++++++++++++" >> ${SETTE_DIR}/output.sette
584	echo " " >> ${SETTE_DIR}/output.sette
585	}

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source: utils/CI/sette/all_functions.sh

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