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sette_reference-configurations.sh in utils/CI/sette – NEMO

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source: utils/CI/sette/sette_reference-configurations.sh @ 13507

Last change on this file since 13507 was 13507, checked in by smasson, 4 years ago
sette: add missing in ORCA2_ICE_OBS and AGRIF_DEMO_NOAGRIF
Property svn:executable set to ``*
File size: 55.9 KB

Rev	Line
[3520]	1	#!/bin/bash
[3708]	2	############################################################
[3520]	3	# Author : Simona Flavoni for NEMO
[4245]	4	# Contact: sflod@locean-ipsl.upmc.fr
	5	# 2013 : A.C. Coward added options for testing with XIOS in dettached mode
[3520]	6	#
	7	# sette.sh : principal script of SET TEsts for NEMO (SETTE)
	8	# ----------------------------------------------------------------------
	9	# NEMO/SETTE , NEMO Consortium (2010)
	10	# Software governed by the CeCILL licence (NEMOGCM/NEMO_CeCILL.txt)
	11	# ----------------------------------------------------------------------
	12	#
	13	#############################################################
[7744]	14	#set -vx
[3520]	15	set -o posix
	16	#set -u
	17	#set -e
[4245]	18	# ===========
[3520]	19	# DESCRIPTION
	20	# ===========
	21	#
	22	# Variables to be checked by user:
	23	#
[4245]	24	# COMPILER : name of compiler as defined in NEMOGCM/ARCH directory
	25	# BATCH_COMMAND_PAR : name of the command for submitting parallel batch jobs
	26	# BATCH_COMMAND_SEQ : name of the command for submitting sequential batch jobs
	27	# INTERACT_FLAG : flag to run in interactive mode "yes"
	28	# to run in batch mode "no"
	29	# MPIRUN_FLAG : flag to run in parallel (MPI) "yes"
	30	# to run in sequential mode (NB_PROC = 1) "no"
	31	# USING_XIOS : flag to control the activation of key_iomput
	32	# "yes" to compile using key_iomput and link to the external XIOS library
	33	# "no" to compile without key_iomput and link to the old IOIPSL library
	34	# USING_MPMD : flag to control the use of stand-alone IO servers
	35	# requires USING_XIOS="yes"
	36	# "yes" to run in MPMD (detached) mode with stand-alone IO servers
	37	# "no" to run in SPMD (attached) mode without separate IO servers
	38	# NUM_XIOSERVERS : number of stand-alone IO servers to employ
	39	# set to zero if USING_MPMD="no"
[3520]	40	#
	41	# Principal script is sette.sh, that calls
	42	#
[4245]	43	# makenemo : to create successive exectuables in ${CONFIG_NAME}/BLD/bin/nemo.exe
[9576]	44	# and links to nemo in ${CONFIG_NAME}/EXP00)
[3520]	45	#
	46	# param.cfg : sets and loads following directories:
	47	#
[4245]	48	# FORCING_DIR : is the directory for forcing files (tarfile)
	49	# INPUT_DIR : is the directory for input files storing
	50	# TMPDIR : is the temporary directory (if needed)
[3520]	51	# NEMO_VALIDATION_DIR : is the validation directory
	52	#
	53	# (NOTE: this file is the same for all configrations to be tested with sette)
	54	#
[4245]	55	# all_functions.sh : loads functions used by sette (note: new functions can be added here)
	56	# set_namelist : function declared in all_functions that sets namelist parameters
	57	# post_test_tidyup : creates validation storage directory and copies required output files
[9019]	58	# (run.stat and ocean.output) in it after execution of test.
[3520]	59	#
[4245]	60	# VALIDATION tree is:
[3520]	61	#
	62	# NEMO_VALIDATION_DIR/WCONFIG_NAME/WCOMPILER_NAME/TEST_NAME/REVISION_NUMBER(or DATE)
	63	#
	64	# prepare_exe_dir.sh : defines and creates directory where the test is executed
[4245]	65	# execution directory takes name of TEST_NAME defined for every test
	66	# in sette.sh. (each test in executed in its own directory)
[3520]	67	#
[10755]	68	# set_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	69	#
[10698]	70	# clean_valid_dir : rename ocean.output/run.stat and tracer.stat to avoid checking them in the report
	71	# ( not doing it could lead to false positive )
	72	#
[4245]	73	# prepare_job.sh : to generate the script run_job.sh
[3520]	74	#
[4245]	75	# fcm_job.sh : run in batch (INTERACT_FLAG="no") or interactive (INTERACT_FLAG="yes")
	76	# see sette.sh and BATCH_TEMPLATE directory
[3520]	77	#
[4245]	78	# NOTE: jobs requiring initial or forcing data need to have an input_CONFIG.cfg in which
	79	# can be found paths to the input tar file)
	80	# NOTE: if job is not launched for any reason you have the executable ready in ${EXE_DIR}
	81	# directory
	82	# NOTE: the changed namelists are left in ${EXE_DIR} directory whereas original namelists
	83	# remain in ${NEW_CONF}/EXP00
[3520]	84	#
[4245]	85	# NOTE: a log file, output.sette, is created in ${SETTE_DIR} with the echoes of
	86	# executed commands
[3520]	87	#
[4245]	88	# NOTE: if sette.sh is stopped in output.sette there is written the last command
	89	# executed by sette.sh
[3520]	90	#
[4245]	91	# example use: ./sette.sh
	92	#########################################################################################
[3520]	93	#
[10687]	94	# LOAD param value
[10717]	95	SETTE_DIR=$(cd $(dirname "$0"); pwd)
	96	MAIN_DIR=$(dirname $SETTE_DIR)
[10687]	97	. ./param.cfg
[7743]	98
[10687]	99	export BATCH_COMMAND_PAR=${BATCH_CMD}
	100	export BATCH_COMMAND_SEQ=${BATCH_CMD}
[4990]	101	export INTERACT_FLAG="no"
[4245]	102	export MPIRUN_FLAG="yes"
[9941]	103	export USING_ICEBERGS="yes"
[3520]	104	#
[4245]	105	export DEL_KEYS="key_iomput"
	106	if [ ${USING_XIOS} == "yes" ]
	107	then
	108	export DEL_KEYS=""
	109	fi
[3520]	110	#
[10687]	111	export ADD_KEYS=""
	112	if [ ${ADD_NOSIGNEDZERO} == "yes" ]
	113	then
	114	export ADD_KEYS="key_nosignedzero"
	115	fi
	116	#
[4245]	117	# Settings which control the use of stand alone servers (only relevant if using xios)
[3520]	118	#
[10632]	119	export NUM_XIOSERVERS=4
[11140]	120	export JOB_PREFIX=${JOB_PREFIX_MPMD}
[3520]	121	#
[4245]	122	if [ ${USING_MPMD} == "no" ]
	123	then
	124	export NUM_XIOSERVERS=0
[11140]	125	export JOB_PREFIX=${JOB_PREFIX_NOMPMD}
[4245]	126	fi
[3520]	127	#
	128	#
[10573]	129	if [ ${USING_MPMD} == "yes" ] && [ ${USING_XIOS} == "no" ]
[4245]	130	then
	131	echo "Incompatible choices. MPMD mode requires the XIOS server"
	132	exit
	133	fi
[3520]	134
	135	# Directory to run the tests
[9602]	136	CONFIG_DIR0=${MAIN_DIR}/cfgs
	137	TOOLS_DIR=${MAIN_DIR}/tools
[3520]	138
	139	CMP_NAM=${1:-$COMPILER}
	140	# Copy job_batch_COMPILER file for specific compiler into job_batch_template
	141	cd ${SETTE_DIR}
[4245]	142	cp BATCH_TEMPLATE/${JOB_PREFIX}-${COMPILER} job_batch_template \|\| exit
[10747]	143	# Description of available configurations:
	144	# GYRE_PISCES :
	145	# ORCA2_ICE_PISCES :
	146	# ORCA2_OFF_PISCES :
	147	# AMM12 :
	148	# SAS :
	149	# ORCA2_ICE_OBS :
	150	# AGRIF : test AGRIF in a double zoom configuration in the nordic seas + 1 zoom in the eq. Pacific (AGRIF_DEMO)
	151	# and check that key_agrif without zoom = no key_agrif
[13382]	152	# WED025 : regional configuration including sea-ice and tides (Spitzbergen)
[4147]	153
[10747]	154	for config in ${TEST_CONFIGS}
[3520]	155	do
	156
[9518]	157	# -----------
	158	# GYRE_PISCES
	159	# -----------
[10747]	160	if [ ${config} == "GYRE_PISCES" ] ; then
[9518]	161	## Restartability tests for GYRE_PISCES
[3520]	162	export TEST_NAME="LONG"
[9658]	163	cd ${MAIN_DIR}
[12569]	164	#
	165	# syncronisation if target directory/file exist (not done by makenemo)
	166	. ${SETTE_DIR}/all_functions.sh
	167	sync_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	168	clean_config GYRE_PISCES GYRE_PISCES_ST 'cfgs'
	169	#
[11497]	170	. ./makenemo -m ${CMP_NAM} -n GYRE_PISCES_ST -r GYRE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	171	cd ${SETTE_DIR}
[4252]	172	. ./param.cfg
	173	. ./all_functions.sh
	174	. ./prepare_exe_dir.sh
[10755]	175	set_valid_dir
[10698]	176	clean_valid_dir
[3520]	177	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	178	NPROC=8
[4245]	179	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	180	cd ${EXE_DIR}
[7715]	181	set_namelist namelist_cfg cn_exp \"GYREPIS_LONG\"
[4147]	182	set_namelist namelist_cfg nn_it000 1
[9560]	183	set_namelist namelist_cfg nn_itend 1080
	184	set_namelist namelist_cfg nn_stock 540
[7646]	185	set_namelist namelist_cfg ln_linssh .true.
[9525]	186	set_namelist namelist_cfg jpni 2
	187	set_namelist namelist_cfg jpnj 4
[10573]	188	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	189	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	190	if [ ${USING_MPMD} == "yes" ] ; then
	191	set_xio_using_server iodef.xml true
	192	else
	193	set_xio_using_server iodef.xml false
	194	fi
	195	cd ${SETTE_DIR}
[10755]	196	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	197
	198	cd ${SETTE_DIR}
	199	export TEST_NAME="SHORT"
[4252]	200	. ./prepare_exe_dir.sh
[10755]	201	set_valid_dir
[10698]	202	clean_valid_dir
[3520]	203	cd ${EXE_DIR}
[7715]	204	set_namelist namelist_cfg cn_exp \"GYREPIS_SHORT\"
[9560]	205	set_namelist namelist_cfg nn_it000 541
	206	set_namelist namelist_cfg nn_itend 1080
	207	set_namelist namelist_cfg nn_stock 540
[4147]	208	set_namelist namelist_cfg ln_rstart .true.
	209	set_namelist namelist_cfg nn_rstctl 2
[7646]	210	set_namelist namelist_cfg ln_linssh .true.
[9525]	211	set_namelist namelist_cfg jpni 2
	212	set_namelist namelist_cfg jpnj 4
[10573]	213	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	214	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[7744]	215	set_namelist namelist_top_cfg ln_rsttr .true.
	216	set_namelist namelist_top_cfg nn_rsttr 2
[9560]	217	set_namelist namelist_cfg cn_ocerst_in \"GYREPIS_LONG_00000540_restart\"
	218	set_namelist namelist_top_cfg cn_trcrst_in \"GYREPIS_LONG_00000540_restart_trc\"
[4245]	219	if [ ${USING_MPMD} == "yes" ] ; then
	220	set_xio_using_server iodef.xml true
	221	else
	222	set_xio_using_server iodef.xml false
	223	fi
[3537]	224	for (( i=1; i<=$NPROC; i++)) ; do
	225	L_NPROC=$(( $i - 1 ))
	226	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9560]	227	ln -sf ../LONG/GYREPIS_LONG_00000540_restart_${L_NPROC}.nc .
	228	ln -sf ../LONG/GYREPIS_LONG_00000540_restart_trc_${L_NPROC}.nc .
[3537]	229	done
[3520]	230	cd ${SETTE_DIR}
[10755]	231	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	232	cd ${SETTE_DIR}
[3532]	233	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	234
[9518]	235	## Reproducibility tests for GYRE_PISCES
[9525]	236	export TEST_NAME="REPRO_2_4"
[9658]	237	cd ${MAIN_DIR}
[3520]	238	cd ${SETTE_DIR}
[4252]	239	. ./param.cfg
	240	. ./all_functions.sh
	241	. ./prepare_exe_dir.sh
[10755]	242	set_valid_dir
[10698]	243	clean_valid_dir
[3520]	244	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	245	NPROC=8
[4245]	246	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	247	cd ${EXE_DIR}
[7715]	248	set_namelist namelist_cfg cn_exp \"GYREPIS_48\"
[4147]	249	set_namelist namelist_cfg nn_it000 1
[9560]	250	set_namelist namelist_cfg nn_itend 1080
[7646]	251	set_namelist namelist_cfg ln_linssh .true.
[9525]	252	set_namelist namelist_cfg jpni 2
	253	set_namelist namelist_cfg jpnj 4
[10573]	254	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	255	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	256	if [ ${USING_MPMD} == "yes" ] ; then
	257	set_xio_using_server iodef.xml true
	258	else
	259	set_xio_using_server iodef.xml false
	260	fi
[3520]	261	cd ${SETTE_DIR}
[10755]	262	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	263	cd ${SETTE_DIR}
	264	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	265
	266	cd ${SETTE_DIR}
[9525]	267	export TEST_NAME="REPRO_4_2"
[4252]	268	. ./prepare_exe_dir.sh
[10755]	269	set_valid_dir
[10698]	270	clean_valid_dir
[3680]	271	JOB_FILE=${EXE_DIR}/run_job.sh
[9525]	272	NPROC=8
[4245]	273	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	274	cd ${EXE_DIR}
[7715]	275	set_namelist namelist_cfg cn_exp \"GYREPIS_84\"
[4147]	276	set_namelist namelist_cfg nn_it000 1
[9560]	277	set_namelist namelist_cfg nn_itend 1080
[7646]	278	set_namelist namelist_cfg ln_linssh .true.
[9525]	279	set_namelist namelist_cfg jpni 4
	280	set_namelist namelist_cfg jpnj 2
[10573]	281	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	282	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[4245]	283	if [ ${USING_MPMD} == "yes" ] ; then
	284	set_xio_using_server iodef.xml true
	285	else
	286	set_xio_using_server iodef.xml false
	287	fi
[3520]	288	cd ${SETTE_DIR}
[10755]	289	. ./prepare_job.sh input_GYRE.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	290	cd ${SETTE_DIR}
	291	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3532]	292
[3520]	293	fi
	294
[9518]	295	# -----------------
[9663]	296	# ORCA2_ICE_PISCES
[9518]	297	# -----------------
[10747]	298	if [ ${config} == "ORCA2_ICE_PISCES" ] ; then
[9663]	299	## Restartability tests for ORCA2_ICE_PISCES
[7646]	300	export TEST_NAME="LONG"
[9658]	301	cd ${MAIN_DIR}
[12569]	302	#
	303	# syncronisation if target directory/file exist (not done by makenemo)
	304	. ${SETTE_DIR}/all_functions.sh
	305	sync_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	306	clean_config ORCA2_ICE_PISCES ORCA2_ICE_PISCES_ST 'cfgs'
	307	#
[11497]	308	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_PISCES_ST -r ORCA2_ICE_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[7646]	309	cd ${SETTE_DIR}
	310	. ./param.cfg
	311	. ./all_functions.sh
	312	. ./prepare_exe_dir.sh
[10755]	313	set_valid_dir
[10698]	314	clean_valid_dir
[7646]	315	JOB_FILE=${EXE_DIR}/run_job.sh
	316	NPROC=32
	317	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	318	cd ${EXE_DIR}
	319	set_namelist namelist_cfg cn_exp \"O2L3P_LONG\"
	320	set_namelist namelist_cfg nn_it000 1
[10750]	321	set_namelist namelist_cfg nn_itend 992
	322	set_namelist namelist_cfg nn_stock 496
[7646]	323	set_namelist namelist_cfg jpni 4
	324	set_namelist namelist_cfg jpnj 8
[10573]	325	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	326	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9933]	327	set_namelist namelist_cfg ln_use_calving .true.
[10189]	328	set_namelist namelist_cfg ln_wave .true.
	329	set_namelist namelist_cfg ln_cdgw .true.
	330	set_namelist namelist_cfg ln_sdw .true.
	331	set_namelist namelist_cfg nn_sdrift 1
	332	set_namelist namelist_cfg ln_stcor .true.
	333	set_namelist namelist_cfg ln_tauwoc .true.
[9904]	334	#
	335	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	336	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	337	#
[9019]	338	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	339	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	340	set_namelist namelist_top_cfg ln_trcbc .false.
	341	# put ln_ironsed, ln_hydrofe to false
[3520]	342	# if not you need input files, and for tests is not necessary
[4147]	343	set_namelist namelist_pisces_cfg ln_varpar .false.
	344	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	345	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	346	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[9203]	347	# put ln_pisdmp to false : no restoring to global mean value
	348	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	349	if [ ${USING_MPMD} == "yes" ] ; then
	350	set_xio_using_server iodef.xml true
	351	else
	352	set_xio_using_server iodef.xml false
	353	fi
[3520]	354	cd ${SETTE_DIR}
[10755]	355	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3532]	356
	357	cd ${SETTE_DIR}
[3520]	358	export TEST_NAME="SHORT"
[4252]	359	. ./prepare_exe_dir.sh
[10755]	360	set_valid_dir
[10698]	361	clean_valid_dir
[3520]	362	cd ${EXE_DIR}
[7646]	363	set_namelist namelist_cfg cn_exp \"O2L3P_SHORT\"
[10750]	364	set_namelist namelist_cfg nn_it000 497
	365	set_namelist namelist_cfg nn_itend 992
	366	set_namelist namelist_cfg nn_stock 496
[4147]	367	set_namelist namelist_cfg ln_rstart .true.
	368	set_namelist namelist_cfg nn_rstctl 2
[7646]	369	set_namelist namelist_cfg jpni 4
	370	set_namelist namelist_cfg jpnj 8
[10573]	371	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	372	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9920]	373	set_namelist namelist_cfg nn_test_icebergs -1
[10189]	374	set_namelist namelist_cfg ln_wave .true.
	375	set_namelist namelist_cfg ln_cdgw .true.
	376	set_namelist namelist_cfg ln_sdw .true.
	377	set_namelist namelist_cfg nn_sdrift 1
	378	set_namelist namelist_cfg ln_stcor .true.
	379	set_namelist namelist_cfg ln_tauwoc .true.
[9904]	380	#
	381	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10732]	382	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
[9904]	383	#
[9933]	384	set_namelist namelist_ice_cfg ln_icediachk .true.
[4147]	385	set_namelist namelist_top_cfg ln_rsttr .true.
	386	set_namelist namelist_top_cfg nn_rsttr 2
[10750]	387	set_namelist namelist_cfg cn_ocerst_in \"O2L3P_LONG_00000496_restart\"
[12474]	388	set_namelist namelist_cfg cn_icbrst_in \"O2L3P_LONG_00000496_restart_icb\"
[10750]	389	set_namelist namelist_top_cfg cn_trcrst_in \"O2L3P_LONG_00000496_restart_trc\"
	390	set_namelist namelist_ice_cfg cn_icerst_in \"O2L3P_LONG_00000496_restart_ice\"
[12428]	391	set_namelist namelist_top_cfg ln_trcbc .false.
	392	# put ln_ironsed, ln_hydrofe to false
[3520]	393	# if not you need input files, and for tests is not necessary
[4147]	394	set_namelist namelist_pisces_cfg ln_varpar .false.
	395	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	396	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	397	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	398	# put ln_pisdmp to false : no restoring to global mean value
[4147]	399	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[3537]	400	for (( i=1; i<=$NPROC; i++)) ; do
	401	L_NPROC=$(( $i - 1 ))
	402	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[10750]	403	ln -sf ../LONG/O2L3P_LONG_00000496_restart_${L_NPROC}.nc .
	404	ln -sf ../LONG/O2L3P_LONG_00000496_restart_trc_${L_NPROC}.nc .
	405	ln -sf ../LONG/O2L3P_LONG_00000496_restart_ice_${L_NPROC}.nc .
[9904]	406	if [ ${USING_ICEBERGS} == "yes" ]
	407	then
[12474]	408	ln -sf ../LONG/O2L3P_LONG_00000496_restart_icb_${L_NPROC}.nc O2L3P_LONG_00000496_restart_icb_${L_NPROC}.nc
[9904]	409	fi
[3537]	410	done
[4245]	411	if [ ${USING_MPMD} == "yes" ] ; then
	412	set_xio_using_server iodef.xml true
	413	else
	414	set_xio_using_server iodef.xml false
	415	fi
[3520]	416	cd ${SETTE_DIR}
[10755]	417	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	418	cd ${SETTE_DIR}
[3532]	419	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	420
[9663]	421	## Reproducibility tests for ORCA2_ICE_PISCES
[7646]	422	export TEST_NAME="REPRO_4_8"
[9658]	423	cd ${MAIN_DIR}
[3520]	424	cd ${SETTE_DIR}
[4252]	425	. ./param.cfg
	426	. ./all_functions.sh
	427	. ./prepare_exe_dir.sh
[10755]	428	set_valid_dir
[10698]	429	clean_valid_dir
[3520]	430	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	431	NPROC=32
[4245]	432	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	433	cd ${EXE_DIR}
[9019]	434	set_namelist namelist_cfg cn_exp \"O2L3P_48\"
[4147]	435	set_namelist namelist_cfg nn_it000 1
[10750]	436	set_namelist namelist_cfg nn_itend 992
[4147]	437	set_namelist namelist_cfg jpni 4
[7646]	438	set_namelist namelist_cfg jpnj 8
[10573]	439	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	440	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[10189]	441	set_namelist namelist_cfg ln_wave .true.
	442	set_namelist namelist_cfg ln_cdgw .true.
	443	set_namelist namelist_cfg ln_sdw .true.
	444	set_namelist namelist_cfg nn_sdrift 1
	445	set_namelist namelist_cfg ln_stcor .true.
	446	set_namelist namelist_cfg ln_tauwoc .true.
	447
[9904]	448	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	449	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	450
[4147]	451	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	452	set_namelist namelist_top_cfg ln_trcbc .false.
	453	# put ln_ironsed, ln_hydrofe to false
[3520]	454	# if not you need input files, and for tests is not necessary
[4147]	455	set_namelist namelist_pisces_cfg ln_varpar .false.
	456	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	457	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	458	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	459	# put ln_pisdmp to false : no restoring to global mean value
[4147]	460	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	461	if [ ${USING_MPMD} == "yes" ] ; then
	462	set_xio_using_server iodef.xml true
	463	else
	464	set_xio_using_server iodef.xml false
	465	fi
[3520]	466	cd ${SETTE_DIR}
[10755]	467	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	468	cd ${SETTE_DIR}
[3532]	469	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	470
	471	cd ${SETTE_DIR}
[7646]	472	export TEST_NAME="REPRO_8_4"
[4252]	473	. ./prepare_exe_dir.sh
[10755]	474	set_valid_dir
[10698]	475	clean_valid_dir
[3680]	476	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	477	NPROC=32
[4245]	478	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	479	cd ${EXE_DIR}
[9019]	480	set_namelist namelist_cfg cn_exp \"O2L3P_84\"
[4147]	481	set_namelist namelist_cfg nn_it000 1
[10750]	482	set_namelist namelist_cfg nn_itend 992
[7646]	483	set_namelist namelist_cfg jpni 8
	484	set_namelist namelist_cfg jpnj 4
[10573]	485	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	486	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[10189]	487	set_namelist namelist_cfg ln_wave .true.
	488	set_namelist namelist_cfg ln_cdgw .true.
	489	set_namelist namelist_cfg ln_sdw .true.
	490	set_namelist namelist_cfg nn_sdrift 1
	491	set_namelist namelist_cfg ln_stcor .true.
	492	set_namelist namelist_cfg ln_tauwoc .true.
[10687]	493
[9904]	494	if [ ${USING_ICEBERGS} == "no" ] ; then set_namelist namelist_cfg ln_icebergs .false. ; fi
[10687]	495	# for debugging purposes set_namelist namelist_cfg rn_test_box -180.0, 180.0, -90.0, -55.0
	496
[4147]	497	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	498	set_namelist namelist_top_cfg ln_trcbc .false.
	499	# put ln_ironsed, ln_hydrofe to false
[3520]	500	# if not you need input files, and for tests is not necessary
[4147]	501	set_namelist namelist_pisces_cfg ln_varpar .false.
	502	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	503	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	504	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	505	# put ln_pisdmp to false : no restoring to global mean value
[4147]	506	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	507	if [ ${USING_MPMD} == "yes" ] ; then
	508	set_xio_using_server iodef.xml true
	509	else
	510	set_xio_using_server iodef.xml false
	511	fi
[3520]	512	cd ${SETTE_DIR}
[10755]	513	. ./prepare_job.sh input_ORCA2_ICE_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	514	cd ${SETTE_DIR}
	515	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	516	fi
	517
[9518]	518	# ----------------
	519	# ORCA2_OFF_PISCES
	520	# ----------------
[10747]	521	if [ ${config} == "ORCA2_OFF_PISCES" ] ; then
[9518]	522	## Restartability tests for ORCA2_OFF_PISCES
[3520]	523	export TEST_NAME="LONG"
[9658]	524	cd ${MAIN_DIR}
[12569]	525	#
	526	# syncronisation if target directory/file exist (not done by makenemo)
	527	. ${SETTE_DIR}/all_functions.sh
	528	sync_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	529	clean_config ORCA2_OFF_PISCES ORCA2_OFF_PISCES_ST 'cfgs'
	530	#
[11497]	531	. ./makenemo -m ${CMP_NAM} -n ORCA2_OFF_PISCES_ST -r ORCA2_OFF_PISCES -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	532	cd ${SETTE_DIR}
[4252]	533	. ./param.cfg
	534	. ./all_functions.sh
	535	. ./prepare_exe_dir.sh
[10755]	536	set_valid_dir
[10698]	537	clean_valid_dir
[3520]	538	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	539	NPROC=32
[4245]	540	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	541	cd ${EXE_DIR}
[4147]	542	set_namelist namelist_cfg cn_exp \"OFFP_LONG\"
	543	set_namelist namelist_cfg nn_it000 1
[9560]	544	set_namelist namelist_cfg nn_itend 380
	545	set_namelist namelist_cfg nn_stock 190
[7646]	546	set_namelist namelist_cfg jpni 4
	547	set_namelist namelist_cfg jpnj 8
[10573]	548	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	549	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	550	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	551	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	552	set_namelist namelist_top_cfg ln_trcbc .false.
	553	# put ln_ironsed, ln_hydrofe to false
[3520]	554	# if not you need input files, and for tests is not necessary
[4147]	555	set_namelist namelist_pisces_cfg ln_varpar .false.
	556	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	557	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	558	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	559	# put ln_pisdmp to false : no restoring to global mean value
[4147]	560	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	561	if [ ${USING_MPMD} == "yes" ] ; then
	562	set_xio_using_server iodef.xml true
	563	else
	564	set_xio_using_server iodef.xml false
	565	fi
[3520]	566	cd ${SETTE_DIR}
[10755]	567	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	568
	569	cd ${SETTE_DIR}
	570	export TEST_NAME="SHORT"
[4252]	571	. ./prepare_exe_dir.sh
[10755]	572	set_valid_dir
[10698]	573	clean_valid_dir
[3520]	574	cd ${EXE_DIR}
[4147]	575	set_namelist namelist_cfg cn_exp \"OFFP_SHORT\"
[9560]	576	set_namelist namelist_cfg nn_it000 191
	577	set_namelist namelist_cfg nn_itend 380
	578	set_namelist namelist_cfg nn_stock 190
[7646]	579	set_namelist namelist_cfg jpni 4
	580	set_namelist namelist_cfg jpnj 8
[10573]	581	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	582	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	583	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	584	set_namelist namelist_top_cfg ln_rsttr .true.
	585	set_namelist namelist_top_cfg nn_rsttr 2
[9560]	586	set_namelist namelist_top_cfg cn_trcrst_in \"OFFP_LONG_00000190_restart_trc\"
[3537]	587	for (( i=1; i<=$NPROC; i++)) ; do
	588	L_NPROC=$(( $i - 1 ))
	589	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9560]	590	ln -sf ../LONG/OFFP_LONG_00000190_restart_trc_${L_NPROC}.nc .
[3537]	591	done
[12428]	592	set_namelist namelist_top_cfg ln_trcbc .false.
	593	# put ln_ironsed, ln_hydrofe to false
[3520]	594	# if not you need input files, and for tests is not necessary
[4147]	595	set_namelist namelist_pisces_cfg ln_varpar .false.
	596	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	597	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	598	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	599	# put ln_pisdmp to false : no restoring to global mean value
[4147]	600	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	601	if [ ${USING_MPMD} == "yes" ] ; then
	602	set_xio_using_server iodef.xml true
	603	else
	604	set_xio_using_server iodef.xml false
	605	fi
[3520]	606	cd ${SETTE_DIR}
[10755]	607	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	608	cd ${SETTE_DIR}
	609	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	610
[9518]	611	## Reproducibility tests for ORCA2_OFF_PISCES
[7646]	612	export TEST_NAME="REPRO_4_8"
[9658]	613	cd ${MAIN_DIR}
[3520]	614	cd ${SETTE_DIR}
[4252]	615	. ./param.cfg
	616	. ./all_functions.sh
	617	. ./prepare_exe_dir.sh
[10755]	618	set_valid_dir
[10698]	619	clean_valid_dir
[3520]	620	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	621	NPROC=32
[4245]	622	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	623	cd ${EXE_DIR}
[9019]	624	set_namelist namelist_cfg cn_exp \"OFFP_48\"
[4147]	625	set_namelist namelist_cfg nn_it000 1
[9560]	626	set_namelist namelist_cfg nn_itend 380
[4147]	627	set_namelist namelist_cfg jpni 4
[7646]	628	set_namelist namelist_cfg jpnj 8
[10573]	629	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	630	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	631	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	632	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	633	set_namelist namelist_top_cfg ln_trcbc .false.
	634	# put ln_ironsed, ln_hydrofe to false
[3520]	635	# if not you need input files, and for tests is not necessary
[4147]	636	set_namelist namelist_pisces_cfg ln_varpar .false.
	637	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	638	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	639	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	640	# put ln_pisdmp to false : no restoring to global mean value
[4147]	641	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	642	if [ ${USING_MPMD} == "yes" ] ; then
	643	set_xio_using_server iodef.xml true
	644	else
	645	set_xio_using_server iodef.xml false
	646	fi
[3520]	647	cd ${SETTE_DIR}
[10755]	648	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	649	cd ${SETTE_DIR}
[3532]	650	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	651
	652	cd ${SETTE_DIR}
[7646]	653	export TEST_NAME="REPRO_8_4"
[4252]	654	. ./prepare_exe_dir.sh
[10755]	655	set_valid_dir
[10698]	656	clean_valid_dir
[3680]	657	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	658	NPROC=32
[4245]	659	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	660	cd ${EXE_DIR}
[9019]	661	set_namelist namelist_cfg cn_exp \"OFFP_84\"
[4147]	662	set_namelist namelist_cfg nn_it000 1
[9560]	663	set_namelist namelist_cfg nn_itend 380
[7646]	664	set_namelist namelist_cfg jpni 8
	665	set_namelist namelist_cfg jpnj 4
[10573]	666	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	667	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[9904]	668	set_namelist namelist_cfg ln_qsr_rgb .true.
[4147]	669	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	670	set_namelist namelist_top_cfg ln_trcbc .false.
	671	# put ln_ironsed, ln_hydrofe to false
[3520]	672	# if not you need input files, and for tests is not necessary
[4147]	673	set_namelist namelist_pisces_cfg ln_varpar .false.
	674	set_namelist namelist_pisces_cfg ln_ironsed .false.
[7646]	675	set_namelist namelist_pisces_cfg ln_ironice .false.
[4147]	676	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[3680]	677	# put ln_pisdmp to false : no restoring to global mean value
[4147]	678	set_namelist namelist_pisces_cfg ln_pisdmp .false.
[4245]	679	if [ ${USING_MPMD} == "yes" ] ; then
	680	set_xio_using_server iodef.xml true
	681	else
	682	set_xio_using_server iodef.xml false
	683	fi
[3520]	684	cd ${SETTE_DIR}
[10755]	685	. ./prepare_job.sh input_ORCA2_OFF_PISCES.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	686	cd ${SETTE_DIR}
	687	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	688	fi
	689
[9518]	690	# -----
	691	# AMM12
	692	# -----
[10747]	693	if [ ${config} == "AMM12" ] ; then
[3532]	694	## Restartability tests for AMM12
	695	export TEST_NAME="LONG"
[9658]	696	cd ${MAIN_DIR}
[12569]	697	#
	698	# syncronisation if target directory/file exist (not done by makenemo)
	699	. ${SETTE_DIR}/all_functions.sh
	700	sync_config AMM12 AMM12_ST 'cfgs'
	701	clean_config AMM12 AMM12_ST 'cfgs'
	702	#
[11497]	703	. ./makenemo -m ${CMP_NAM} -n AMM12_ST -r AMM12 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[3520]	704	cd ${SETTE_DIR}
[4252]	705	. ./param.cfg
	706	. ./all_functions.sh
	707	. ./prepare_exe_dir.sh
[10755]	708	set_valid_dir
[10698]	709	clean_valid_dir
[3520]	710	JOB_FILE=${EXE_DIR}/run_job.sh
	711	NPROC=32
[4245]	712	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	713	cd ${EXE_DIR}
[9019]	714	set_namelist namelist_cfg cn_exp \"AMM12_LONG\"
[4147]	715	set_namelist namelist_cfg nn_it000 1
[4252]	716	set_namelist namelist_cfg nn_itend 576
	717	set_namelist namelist_cfg nn_stock 288
[7646]	718	set_namelist namelist_cfg jpni 4
	719	set_namelist namelist_cfg jpnj 8
[10573]	720	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	721	if [ ${USING_MPMD} == "yes" ] ; then
	722	set_xio_using_server iodef.xml true
	723	else
	724	set_xio_using_server iodef.xml false
	725	fi
[3520]	726	cd ${SETTE_DIR}
[10755]	727	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	728
	729	cd ${SETTE_DIR}
[3532]	730	export TEST_NAME="SHORT"
[4379]	731	. ./prepare_exe_dir.sh
[10755]	732	set_valid_dir
[10698]	733	clean_valid_dir
[3520]	734	cd ${EXE_DIR}
[9019]	735	set_namelist namelist_cfg cn_exp \"AMM12_SHORT\"
[4252]	736	set_namelist namelist_cfg nn_it000 289
	737	set_namelist namelist_cfg nn_itend 576
[7646]	738	set_namelist namelist_cfg jpni 4
	739	set_namelist namelist_cfg jpnj 8
[10573]	740	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4147]	741	set_namelist namelist_cfg ln_rstart .true.
	742	set_namelist namelist_cfg nn_rstctl 2
[9019]	743	set_namelist namelist_cfg cn_ocerst_in \"AMM12_LONG_00000288_restart\"
[4252]	744	set_namelist namelist_cfg nn_date0 20120102
[3537]	745	for (( i=1; i<=$NPROC; i++)) ; do
	746	L_NPROC=$(( $i - 1 ))
	747	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[9019]	748	ln -sf ../LONG/AMM12_LONG_00000288_restart_${L_NPROC}.nc .
[3537]	749	done
[4245]	750	if [ ${USING_MPMD} == "yes" ] ; then
	751	set_xio_using_server iodef.xml true
	752	else
	753	set_xio_using_server iodef.xml false
	754	fi
[3520]	755	cd ${SETTE_DIR}
[10755]	756	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	757	cd ${SETTE_DIR}
[3532]	758	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	759
[3680]	760	## Reproducibility tests for AMM12
	761	export TEST_NAME="REPRO_8_4"
[9658]	762	cd ${MAIN_DIR}
[3520]	763	cd ${SETTE_DIR}
[4252]	764	. ./param.cfg
	765	. ./all_functions.sh
	766	. ./prepare_exe_dir.sh
[10755]	767	set_valid_dir
[10698]	768	clean_valid_dir
[3520]	769	JOB_FILE=${EXE_DIR}/run_job.sh
	770	NPROC=32
[4245]	771	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	772	cd ${EXE_DIR}
[9019]	773	set_namelist namelist_cfg cn_exp \"AMM12_84\"
[4147]	774	set_namelist namelist_cfg nn_it000 1
	775	set_namelist namelist_cfg nn_itend 576
	776	set_namelist namelist_cfg jpni 8
	777	set_namelist namelist_cfg jpnj 4
[10573]	778	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	779	if [ ${USING_MPMD} == "yes" ] ; then
	780	set_xio_using_server iodef.xml true
	781	else
	782	set_xio_using_server iodef.xml false
	783	fi
[3520]	784	cd ${SETTE_DIR}
[10755]	785	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	786	cd ${SETTE_DIR}
	787	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	788
	789	cd ${SETTE_DIR}
[3680]	790	export TEST_NAME="REPRO_4_8"
[4252]	791	. ./prepare_exe_dir.sh
[10755]	792	set_valid_dir
[10698]	793	clean_valid_dir
[5478]	794	JOB_FILE=${EXE_DIR}/run_job.sh
	795	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[3520]	796	cd ${EXE_DIR}
[9019]	797	set_namelist namelist_cfg cn_exp \"AMM12_48\"
[4147]	798	set_namelist namelist_cfg nn_it000 1
	799	set_namelist namelist_cfg nn_itend 576
	800	set_namelist namelist_cfg jpni 4
	801	set_namelist namelist_cfg jpnj 8
[10573]	802	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4245]	803	if [ ${USING_MPMD} == "yes" ] ; then
	804	set_xio_using_server iodef.xml true
	805	else
	806	set_xio_using_server iodef.xml false
	807	fi
[3520]	808	cd ${SETTE_DIR}
[10755]	809	. ./prepare_job.sh input_AMM12.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[3520]	810	cd ${SETTE_DIR}
[3532]	811	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[3520]	812	fi
	813
	814
[9518]	815	# ---------
	816	# ORCA2_SAS
	817	# ---------
[10747]	818	if [ ${config} == "SAS" ] ; then
[9518]	819	## Restartability tests
[4147]	820	export TEST_NAME="LONG"
[9658]	821	cd ${MAIN_DIR}
[12569]	822	#
	823	# syncronisation if target directory/file exist (not done by makenemo)
	824	. ${SETTE_DIR}/all_functions.sh
	825	sync_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	826	clean_config ORCA2_SAS_ICE ORCA2_SAS_ICE_ST 'cfgs'
	827	#
[11497]	828	. ./makenemo -m ${CMP_NAM} -n ORCA2_SAS_ICE_ST -r ORCA2_SAS_ICE -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[4147]	829	cd ${SETTE_DIR}
[4252]	830	. ./param.cfg
	831	. ./all_functions.sh
	832	. ./prepare_exe_dir.sh
[10755]	833	set_valid_dir
[10698]	834	clean_valid_dir
[4147]	835	JOB_FILE=${EXE_DIR}/run_job.sh
	836	NPROC=32
[7646]	837	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
[4147]	838	cd ${EXE_DIR}
	839	set_namelist namelist_cfg cn_exp \"SAS\"
	840	set_namelist namelist_cfg nn_it000 1
[10750]	841	set_namelist namelist_cfg nn_itend 256
	842	set_namelist namelist_cfg nn_stock 128
[7646]	843	set_namelist namelist_cfg jpni 4
	844	set_namelist namelist_cfg jpnj 8
[10573]	845	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9019]	846	set_namelist namelist_ice_cfg ln_icediachk .true.
[4245]	847	if [ ${USING_MPMD} == "yes" ] ; then
	848	set_xio_using_server iodef.xml true
	849	else
	850	set_xio_using_server iodef.xml false
	851	fi
[4147]	852	cd ${SETTE_DIR}
[10755]	853	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	854
	855	cd ${SETTE_DIR}
	856	export TEST_NAME="SHORT"
[4252]	857	. ./prepare_exe_dir.sh
[10755]	858	set_valid_dir
[10698]	859	clean_valid_dir
[4147]	860	cd ${EXE_DIR}
	861	set_namelist namelist_cfg cn_exp \"SAS\"
[10750]	862	set_namelist namelist_cfg nn_it000 129
	863	set_namelist namelist_cfg nn_itend 256
[7646]	864	set_namelist namelist_cfg jpni 4
	865	set_namelist namelist_cfg jpnj 8
[10573]	866	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[7646]	867	set_namelist namelist_cfg ln_rstart .true.
[4147]	868	set_namelist namelist_cfg nn_rstctl 2
[9019]	869	set_namelist namelist_cfg nn_date0 010109
[10750]	870	set_namelist namelist_cfg cn_ocerst_in \"SAS_00000128_restart\"
	871	set_namelist namelist_ice_cfg cn_icerst_in \"SAS_00000128_restart_ice\"
[4245]	872	if [ ${USING_MPMD} == "yes" ] ; then
	873	set_xio_using_server iodef.xml true
	874	else
	875	set_xio_using_server iodef.xml false
	876	fi
[7646]	877	for (( i=1; i<=$NPROC; i++)) ; do
	878	L_NPROC=$(( $i - 1 ))
	879	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[10750]	880	ln -sf ../LONG/SAS_00000128_restart_${L_NPROC}.nc .
	881	ln -sf ../LONG/SAS_00000128_restart_ice_${L_NPROC}.nc .
[7646]	882	done
[4147]	883	cd ${SETTE_DIR}
[10755]	884	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4147]	885	cd ${SETTE_DIR}
	886	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	887
[9518]	888	## Reproducibility tests
	889	export TEST_NAME="REPRO_4_8"
[9658]	890	cd ${MAIN_DIR}
[4990]	891	cd ${SETTE_DIR}
	892	. ./param.cfg
	893	. ./all_functions.sh
	894	. ./prepare_exe_dir.sh
[10755]	895	set_valid_dir
[10698]	896	clean_valid_dir
[4990]	897	JOB_FILE=${EXE_DIR}/run_job.sh
[9518]	898	NPROC=32
[4990]	899	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	900	cd ${EXE_DIR}
[9518]	901	set_namelist namelist_cfg cn_exp \"SAS_48\"
[4990]	902	set_namelist namelist_cfg nn_it000 1
[10750]	903	set_namelist namelist_cfg nn_itend 80
[9518]	904	set_namelist namelist_cfg jpni 4
	905	set_namelist namelist_cfg jpnj 8
[10573]	906	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]	907	if [ ${USING_MPMD} == "yes" ] ; then
	908	set_xio_using_server iodef.xml true
	909	else
	910	set_xio_using_server iodef.xml false
	911	fi
	912	cd ${SETTE_DIR}
[10755]	913	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	914	cd ${SETTE_DIR}
	915	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
[9019]	916
[4990]	917	cd ${SETTE_DIR}
[7646]	918	export TEST_NAME="REPRO_8_4"
[4990]	919	. ./prepare_exe_dir.sh
[10755]	920	set_valid_dir
[10698]	921	clean_valid_dir
[4990]	922	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	923	NPROC=32
[4990]	924	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	925	cd ${EXE_DIR}
[9518]	926	set_namelist namelist_cfg cn_exp \"SAS_84\"
[4990]	927	set_namelist namelist_cfg nn_it000 1
[10750]	928	set_namelist namelist_cfg nn_itend 80
[7646]	929	set_namelist namelist_cfg jpni 8
	930	set_namelist namelist_cfg jpnj 4
[10573]	931	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[4990]	932	if [ ${USING_MPMD} == "yes" ] ; then
	933	set_xio_using_server iodef.xml true
	934	else
	935	set_xio_using_server iodef.xml false
	936	fi
	937	cd ${SETTE_DIR}
[10755]	938	. ./prepare_job.sh input_SAS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	939	cd ${SETTE_DIR}
	940	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	941
	942	fi
	943
[9518]	944
	945	# --------------
[9663]	946	# ORCA2_ICE_OBS
[9518]	947	# --------------
[4990]	948	## Test assimilation interface code, OBS and ASM for reproducibility
	949	## Restartability not tested (ASM code not restartable while increments are being applied)
[10747]	950	if [ ${config} == "ORCA2_ICE_OBS" ] ; then
[9518]	951	## Reproducibility tests
[7646]	952	export TEST_NAME="REPRO_4_8"
[9658]	953	cd ${MAIN_DIR}
[12569]	954	#
	955	# syncronisation if target directory/file exist (not done by makenemo)
	956	. ${SETTE_DIR}/all_functions.sh
	957	sync_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	958	clean_config ORCA2_ICE_PISCES ORCA2_ICE_OBS_ST 'cfgs'
	959	#
[13507]	960	. ./makenemo -m ${CMP_NAM} -n ORCA2_ICE_OBS_ST -r ORCA2_ICE_PISCES -d "OCE ICE" -j 8 add_key "key_asminc ${ADD_KEYS}" del_key "key_top ${DEL_KEYS}"
[4990]	961	cd ${SETTE_DIR}
	962	. ./param.cfg
	963	. ./all_functions.sh
	964	. ./prepare_exe_dir.sh
[10755]	965	set_valid_dir
[10698]	966	clean_valid_dir
[4990]	967	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	968	NPROC=32
[4990]	969	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	970	cd ${EXE_DIR}
[9019]	971	set_namelist namelist_cfg cn_exp \"O2L3OBS_48\"
[4990]	972	set_namelist namelist_cfg nn_it000 1
[10750]	973	set_namelist namelist_cfg nn_itend 80
[7646]	974	set_namelist namelist_cfg ln_read_cfg .true.
[4990]	975	set_namelist namelist_cfg jpni 4
[7646]	976	set_namelist namelist_cfg jpnj 8
[10573]	977	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	978	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	979	set_namelist namelist_cfg ln_diaobs .true.
[4990]	980	set_namelist namelist_cfg ln_t3d .true.
	981	set_namelist namelist_cfg ln_s3d .true.
	982	set_namelist namelist_cfg ln_sst .true.
	983	set_namelist namelist_cfg ln_sla .true.
[6140]	984	set_namelist namelist_cfg ln_sic .true.
	985	set_namelist namelist_cfg ln_vel3d .true.
[4990]	986	set_namelist namelist_cfg ln_bkgwri .true.
	987	set_namelist namelist_cfg ln_trainc .true.
	988	set_namelist namelist_cfg ln_dyninc .true.
	989	set_namelist namelist_cfg ln_sshinc .true.
	990	set_namelist namelist_cfg ln_asmiau .true.
[9663]	991	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	992	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	993	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	994	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	995	# if not you need input files, and for tests is not necessary
	996	set_namelist namelist_pisces_cfg ln_varpar .false.
	997	set_namelist namelist_pisces_cfg ln_ironsed .false.
	998	set_namelist namelist_pisces_cfg ln_ironice .false.
	999	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]	1000	if [ ${USING_MPMD} == "yes" ] ; then
	1001	set_xio_using_server iodef.xml true
	1002	else
	1003	set_xio_using_server iodef.xml false
	1004	fi
	1005	cd ${SETTE_DIR}
[10755]	1006	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1007	cd ${SETTE_DIR}
	1008	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1009
	1010	cd ${SETTE_DIR}
[7646]	1011	export TEST_NAME="REPRO_8_4"
[4990]	1012	. ./prepare_exe_dir.sh
[10755]	1013	set_valid_dir
[10698]	1014	clean_valid_dir
[4990]	1015	JOB_FILE=${EXE_DIR}/run_job.sh
[7646]	1016	NPROC=32
[4990]	1017	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1018	cd ${EXE_DIR}
[9019]	1019	set_namelist namelist_cfg cn_exp \"O2L3OBS_84\"
[4990]	1020	set_namelist namelist_cfg nn_it000 1
[10750]	1021	set_namelist namelist_cfg nn_itend 80
[7646]	1022	set_namelist namelist_cfg ln_read_cfg .true.
	1023	set_namelist namelist_cfg jpni 8
	1024	set_namelist namelist_cfg jpnj 4
[10573]	1025	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
	1026	set_namelist namelist_cfg sn_cfctl%l_trcstat .true.
[6140]	1027	set_namelist namelist_cfg ln_diaobs .true.
[4990]	1028	set_namelist namelist_cfg ln_t3d .true.
	1029	set_namelist namelist_cfg ln_s3d .true.
	1030	set_namelist namelist_cfg ln_sst .true.
	1031	set_namelist namelist_cfg ln_sla .true.
[6140]	1032	set_namelist namelist_cfg ln_sic .true.
	1033	set_namelist namelist_cfg ln_vel3d .true.
[4990]	1034	set_namelist namelist_cfg ln_bkgwri .true.
	1035	set_namelist namelist_cfg ln_trainc .true.
	1036	set_namelist namelist_cfg ln_dyninc .true.
	1037	set_namelist namelist_cfg ln_sshinc .true.
	1038	set_namelist namelist_cfg ln_asmiau .true.
[9663]	1039	#remove all useless options for pisces (due to ORCA2_ICE_PISCES reference configuration)
[7722]	1040	set_namelist namelist_top_cfg ln_trcdta .false.
[12428]	1041	set_namelist namelist_top_cfg ln_trcbc .false.
[7722]	1042	# put ln_ironsed, ln_river, ln_ndepo, ln_dust to false
	1043	# if not you need input files, and for tests is not necessary
	1044	set_namelist namelist_pisces_cfg ln_varpar .false.
	1045	set_namelist namelist_pisces_cfg ln_ironsed .false.
	1046	set_namelist namelist_pisces_cfg ln_ironice .false.
	1047	set_namelist namelist_pisces_cfg ln_hydrofe .false.
[4990]	1048	if [ ${USING_MPMD} == "yes" ] ; then
	1049	set_xio_using_server iodef.xml true
	1050	else
	1051	set_xio_using_server iodef.xml false
	1052	fi
	1053	cd ${SETTE_DIR}
[10755]	1054	. ./prepare_job.sh input_ORCA2_ICE_OBS.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[4990]	1055	cd ${SETTE_DIR}
	1056	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1057	fi
[5589]	1058
[9483]	1059	# ------------
[9663]	1060	# AGRIF ICE
[9483]	1061	# -----------
[10747]	1062	if [ ${config} == "AGRIF" ] ; then
[9518]	1063	## Restartability tests
[9483]	1064	export TEST_NAME="LONG"
[9658]	1065	cd ${MAIN_DIR}
[12569]	1066	#
	1067	# syncronisation if target directory/file exist (not done by makenemo)
	1068	. ${SETTE_DIR}/all_functions.sh
	1069	sync_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1070	clean_config AGRIF_DEMO AGRIF_DEMO_ST 'cfgs'
	1071	#
[11497]	1072	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9483]	1073	cd ${SETTE_DIR}
	1074	. ./param.cfg
	1075	. ./all_functions.sh
	1076	. ./prepare_exe_dir.sh
[10755]	1077	set_valid_dir
[10698]	1078	clean_valid_dir
[9483]	1079	JOB_FILE=${EXE_DIR}/run_job.sh
[9776]	1080	NPROC=16
[9483]	1081	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1082	cd ${EXE_DIR}
	1083	set_namelist namelist_cfg cn_exp \"AGRIF_LONG\"
	1084	set_namelist namelist_cfg nn_it000 1
	1085	set_namelist namelist_cfg nn_itend 20
	1086	set_namelist namelist_cfg nn_stock 10
[10573]	1087	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1088	set_namelist 1_namelist_cfg cn_exp \"AGRIF_LONG\"
	1089	set_namelist 1_namelist_cfg nn_it000 1
[9776]	1090	set_namelist 1_namelist_cfg nn_itend 20
	1091	set_namelist 1_namelist_cfg nn_stock 10
[10573]	1092	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1093	set_namelist 2_namelist_cfg cn_exp \"AGRIF_LONG\"
	1094	set_namelist 2_namelist_cfg nn_it000 1
[9776]	1095	set_namelist 2_namelist_cfg nn_itend 80
	1096	set_namelist 2_namelist_cfg nn_stock 40
[10573]	1097	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1098	set_namelist 3_namelist_cfg cn_exp \"AGRIF_LONG\"
	1099	set_namelist 3_namelist_cfg nn_it000 1
	1100	set_namelist 3_namelist_cfg nn_itend 240
	1101	set_namelist 3_namelist_cfg nn_stock 120
[10573]	1102	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1103
[9483]	1104	if [ ${USING_MPMD} == "yes" ] ; then
	1105	set_xio_using_server iodef.xml true
	1106	else
	1107	set_xio_using_server iodef.xml false
	1108	fi
	1109	cd ${SETTE_DIR}
[10755]	1110	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1111
	1112	cd ${SETTE_DIR}
	1113	export TEST_NAME="SHORT"
	1114	. ./prepare_exe_dir.sh
[10755]	1115	set_valid_dir
[10698]	1116	clean_valid_dir
[9483]	1117	cd ${EXE_DIR}
	1118	set_namelist namelist_cfg cn_exp \"AGRIF_SHORT\"
	1119	set_namelist namelist_cfg nn_it000 11
	1120	set_namelist namelist_cfg nn_itend 20
	1121	set_namelist namelist_cfg nn_stock 10
[10573]	1122	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1123	set_namelist namelist_cfg ln_rstart .true.
	1124	set_namelist namelist_cfg nn_rstctl 2
	1125	set_namelist 1_namelist_cfg cn_exp \"AGRIF_SHORT\"
[9776]	1126	set_namelist 1_namelist_cfg nn_it000 11
	1127	set_namelist 1_namelist_cfg nn_itend 20
	1128	set_namelist 1_namelist_cfg nn_stock 10
[10573]	1129	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1130	set_namelist 1_namelist_cfg ln_rstart .true.
	1131	set_namelist 1_namelist_cfg nn_rstctl 2
	1132	set_namelist 2_namelist_cfg cn_exp \"AGRIF_SHORT\"
[9776]	1133	set_namelist 2_namelist_cfg nn_it000 41
	1134	set_namelist 2_namelist_cfg nn_itend 80
	1135	set_namelist 2_namelist_cfg nn_stock 40
[10573]	1136	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1137	set_namelist 2_namelist_cfg ln_rstart .true.
	1138	set_namelist 2_namelist_cfg nn_rstctl 2
[9776]	1139	set_namelist 3_namelist_cfg cn_exp \"AGRIF_SHORT\"
	1140	set_namelist 3_namelist_cfg nn_it000 121
	1141	set_namelist 3_namelist_cfg nn_itend 240
	1142	set_namelist 3_namelist_cfg nn_stock 120
[10573]	1143	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9776]	1144	set_namelist 3_namelist_cfg ln_rstart .true.
	1145	set_namelist 3_namelist_cfg nn_rstctl 2
[9483]	1146	set_namelist namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000010_restart\"
	1147	set_namelist namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000010_restart_ice\"
[9776]	1148	set_namelist 1_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000010_restart\"
	1149	set_namelist 1_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000010_restart_ice\"
	1150	set_namelist 2_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000040_restart\"
	1151	set_namelist 2_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000040_restart_ice\"
	1152	set_namelist 3_namelist_cfg cn_ocerst_in \"AGRIF_LONG_00000120_restart\"
	1153	set_namelist 3_namelist_ice_cfg cn_icerst_in \"AGRIF_LONG_00000120_restart_ice\"
[9483]	1154
	1155	for (( i=1; i<=$NPROC; i++)) ; do
	1156	L_NPROC=$(( $i - 1 ))
	1157	L_NPROC=`printf "%04d\n" ${L_NPROC}`
	1158	ln -sf ../LONG/AGRIF_LONG_00000010_restart_${L_NPROC}.nc .
	1159	ln -sf ../LONG/AGRIF_LONG_00000010_restart_ice_${L_NPROC}.nc .
[9776]	1160	ln -sf ../LONG/1_AGRIF_LONG_00000010_restart_${L_NPROC}.nc .
	1161	ln -sf ../LONG/1_AGRIF_LONG_00000010_restart_ice_${L_NPROC}.nc .
	1162	ln -sf ../LONG/2_AGRIF_LONG_00000040_restart_${L_NPROC}.nc .
	1163	ln -sf ../LONG/2_AGRIF_LONG_00000040_restart_ice_${L_NPROC}.nc .
	1164	ln -sf ../LONG/3_AGRIF_LONG_00000120_restart_${L_NPROC}.nc .
	1165	ln -sf ../LONG/3_AGRIF_LONG_00000120_restart_ice_${L_NPROC}.nc .
[9483]	1166	done
	1167	if [ ${USING_MPMD} == "yes" ] ; then
	1168	set_xio_using_server iodef.xml true
	1169	else
	1170	set_xio_using_server iodef.xml false
	1171	fi
	1172	cd ${SETTE_DIR}
[10755]	1173	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1174	cd ${SETTE_DIR}
	1175	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1176
[9518]	1177	## Reproducibility tests
[11800]	1178	export TEST_NAME="REPRO_2_8"
[9658]	1179	cd ${MAIN_DIR}
[9483]	1180	cd ${SETTE_DIR}
	1181	. ./param.cfg
	1182	. ./all_functions.sh
	1183	. ./prepare_exe_dir.sh
[10755]	1184	set_valid_dir
[10698]	1185	clean_valid_dir
[9483]	1186	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1187	NPROC=16
[9483]	1188	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1189	cd ${EXE_DIR}
[11800]	1190	set_namelist namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1191	set_namelist namelist_cfg nn_it000 1
	1192	set_namelist namelist_cfg nn_itend 20
[11800]	1193	set_namelist namelist_cfg jpni 2
[9483]	1194	set_namelist namelist_cfg jpnj 8
[10573]	1195	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1196	set_namelist 1_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1197	set_namelist 1_namelist_cfg nn_it000 1
[9776]	1198	set_namelist 1_namelist_cfg nn_itend 20
[11800]	1199	set_namelist 1_namelist_cfg jpni 2
[9483]	1200	set_namelist 1_namelist_cfg jpnj 8
[10573]	1201	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1202	set_namelist 2_namelist_cfg cn_exp \"AGRIF_28\"
[9483]	1203	set_namelist 2_namelist_cfg nn_it000 1
[9776]	1204	set_namelist 2_namelist_cfg nn_itend 80
[11800]	1205	set_namelist 2_namelist_cfg jpni 2
[9483]	1206	set_namelist 2_namelist_cfg jpnj 8
[10573]	1207	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1208	set_namelist 3_namelist_cfg cn_exp \"AGRIF_28\"
[9776]	1209	set_namelist 3_namelist_cfg nn_it000 1
	1210	set_namelist 3_namelist_cfg nn_itend 240
[11800]	1211	set_namelist 3_namelist_cfg jpni 2
[9776]	1212	set_namelist 3_namelist_cfg jpnj 8
[10573]	1213	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1214
	1215	if [ ${USING_MPMD} == "yes" ] ; then
	1216	set_xio_using_server iodef.xml true
	1217	else
	1218	set_xio_using_server iodef.xml false
	1219	fi
	1220	cd ${SETTE_DIR}
[10755]	1221	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1222	cd ${SETTE_DIR}
	1223	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1224
	1225	cd ${SETTE_DIR}
[11800]	1226	export TEST_NAME="REPRO_4_4"
[9483]	1227	. ./prepare_exe_dir.sh
[10755]	1228	set_valid_dir
[10698]	1229	clean_valid_dir
[9483]	1230	JOB_FILE=${EXE_DIR}/run_job.sh
[11800]	1231	NPROC=16
[9483]	1232	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1233	cd ${EXE_DIR}
[11800]	1234	set_namelist namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1235	set_namelist namelist_cfg nn_it000 1
	1236	set_namelist namelist_cfg nn_itend 20
[11800]	1237	set_namelist namelist_cfg jpni 4
[9483]	1238	set_namelist namelist_cfg jpnj 4
[10573]	1239	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1240	set_namelist 1_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1241	set_namelist 1_namelist_cfg nn_it000 1
[9776]	1242	set_namelist 1_namelist_cfg nn_itend 20
[11800]	1243	set_namelist 1_namelist_cfg jpni 4
[9483]	1244	set_namelist 1_namelist_cfg jpnj 4
[10573]	1245	set_namelist 1_namelist_cfg sn_cfctl%l_runstat .true.
[11800]	1246	set_namelist 2_namelist_cfg cn_exp \"AGRIF_44\"
[9483]	1247	set_namelist 2_namelist_cfg nn_it000 1
[9776]	1248	set_namelist 2_namelist_cfg nn_itend 80
[11800]	1249	set_namelist 2_namelist_cfg jpni 4
[9483]	1250	set_namelist 2_namelist_cfg jpnj 4
[10573]	1251	set_namelist 2_namelist_cfg sn_cfctl%l_runstat .true.
[12428]	1252	set_namelist 3_namelist_cfg cn_exp \"AGRIF_44\"
[9776]	1253	set_namelist 3_namelist_cfg nn_it000 1
	1254	set_namelist 3_namelist_cfg nn_itend 240
[11800]	1255	set_namelist 3_namelist_cfg jpni 4
[9776]	1256	set_namelist 3_namelist_cfg jpnj 4
[10573]	1257	set_namelist 3_namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1258
	1259	if [ ${USING_MPMD} == "yes" ] ; then
	1260	set_xio_using_server iodef.xml true
	1261	else
	1262	set_xio_using_server iodef.xml false
	1263	fi
	1264	cd ${SETTE_DIR}
[10755]	1265	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1266	cd ${SETTE_DIR}
	1267	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1268
[9507]	1269	## test code corruption with AGRIF (phase 1) ==> Compile with key_agrif but run with no zoom
	1270	export TEST_NAME="ORCA2"
[9658]	1271	cd ${MAIN_DIR}
[9483]	1272	cd ${SETTE_DIR}
	1273	. ./param.cfg
	1274	. ./all_functions.sh
	1275	. ./prepare_exe_dir.sh
[10755]	1276	set_valid_dir
[10698]	1277	clean_valid_dir
[9483]	1278	JOB_FILE=${EXE_DIR}/run_job.sh
	1279	NPROC=32
	1280	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1281	cd ${EXE_DIR}
[9507]	1282	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1283	set_namelist namelist_cfg nn_it000 1
	1284	set_namelist namelist_cfg nn_itend 150
[10573]	1285	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9507]	1286
[9483]	1287	# Set the number of fine grids to zero:
	1288	sed -i "1s/.*/0/" ${EXE_DIR}/AGRIF_FixedGrids.in
	1289
	1290	if [ ${USING_MPMD} == "yes" ] ; then
	1291	set_xio_using_server iodef.xml true
	1292	else
	1293	set_xio_using_server iodef.xml false
	1294	fi
	1295	cd ${SETTE_DIR}
[10755]	1296	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1297	cd ${SETTE_DIR}
	1298	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1299
	1300	fi
	1301
[9525]	1302
[9776]	1303	## test code corruption with AGRIF (phase 2) ==> Compile without key_agrif (to be compared with AGRIF_DEMO_ST/ORCA2)
[10747]	1304	if [ ${config} == "AGRIF" ] ; then
[9507]	1305	export TEST_NAME="ORCA2"
[9658]	1306	cd ${MAIN_DIR}
[12569]	1307	#
	1308	# syncronisation if target directory/file exist (not done by makenemo)
	1309	. ${SETTE_DIR}/all_functions.sh
	1310	sync_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1311	clean_config AGRIF_DEMO AGRIF_DEMO_NOAGRIF_ST 'cfgs'
	1312	#
[13507]	1313	. ./makenemo -m ${CMP_NAM} -n AGRIF_DEMO_NOAGRIF_ST -r AGRIF_DEMO -j 8 add_key "${ADD_KEYS}" del_key "key_agrif ${DEL_KEYS}"
[9483]	1314	cd ${SETTE_DIR}
	1315	. ./param.cfg
	1316	. ./all_functions.sh
	1317	. ./prepare_exe_dir.sh
[10755]	1318	set_valid_dir
[10698]	1319	clean_valid_dir
[9483]	1320	JOB_FILE=${EXE_DIR}/run_job.sh
	1321	NPROC=32
	1322	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1323	cd ${EXE_DIR}
[9507]	1324	set_namelist namelist_cfg cn_exp \"ORCA2\"
[9483]	1325	set_namelist namelist_cfg nn_it000 1
	1326	set_namelist namelist_cfg nn_itend 150
[10573]	1327	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9483]	1328	#
	1329	if [ ${USING_MPMD} == "yes" ] ; then
	1330	set_xio_using_server iodef.xml true
	1331	else
	1332	set_xio_using_server iodef.xml false
	1333	fi
	1334	cd ${SETTE_DIR}
[10755]	1335	. ./prepare_job.sh input_AGRIF.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9483]	1336	cd ${SETTE_DIR}
	1337	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1338
	1339	fi
	1340
[9553]	1341	# -------
[13382]	1342	# WED025
[9553]	1343	# -------
[13382]	1344	if [ ${config} == "WED025" ] ; then
[9553]	1345	## Restartability tests
	1346	export TEST_NAME="LONG"
[9658]	1347	cd ${MAIN_DIR}
[12569]	1348	#
	1349	# syncronisation if target directory/file exist (not done by makenemo)
	1350	. ${SETTE_DIR}/all_functions.sh
[13382]	1351	sync_config WED025 WED025_ST 'cfgs'
	1352	clean_config WED025 WED025_ST 'cfgs'
[12569]	1353	#
[13382]	1354	. ./makenemo -m ${CMP_NAM} -n WED025_ST -r WED025 -j 8 add_key "${ADD_KEYS}" del_key "${DEL_KEYS}"
[9553]	1355	cd ${SETTE_DIR}
	1356	. ./param.cfg
	1357	. ./all_functions.sh
	1358	. ./prepare_exe_dir.sh
[10755]	1359	set_valid_dir
[10698]	1360	clean_valid_dir
[9553]	1361	JOB_FILE=${EXE_DIR}/run_job.sh
	1362	NPROC=32
	1363	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1364	cd ${EXE_DIR}
[13382]	1365	set_namelist namelist_cfg cn_exp \"WED025_LONG\"
[9553]	1366	set_namelist namelist_cfg nn_it000 1
[13382]	1367	set_namelist namelist_cfg nn_itend 720
	1368	set_namelist namelist_cfg nn_stock 360
	1369	set_namelist namelist_cfg nn_date0 20000115
[9553]	1370	set_namelist namelist_cfg jpni 4
	1371	set_namelist namelist_cfg jpnj 8
[10573]	1372	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9744]	1373	#set_namelist namelist_ice_cfg ln_icediachk .true.
[9553]	1374	if [ ${USING_MPMD} == "yes" ] ; then
	1375	set_xio_using_server iodef.xml true
	1376	else
	1377	set_xio_using_server iodef.xml false
	1378	fi
	1379	cd ${SETTE_DIR}
[13382]	1380	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1381
	1382	cd ${SETTE_DIR}
	1383	export TEST_NAME="SHORT"
	1384	. ./prepare_exe_dir.sh
[10755]	1385	set_valid_dir
[10698]	1386	clean_valid_dir
[9553]	1387	cd ${EXE_DIR}
[13382]	1388	set_namelist namelist_cfg cn_exp \"WED025_SHORT\"
	1389	set_namelist namelist_cfg nn_it000 361
	1390	set_namelist namelist_cfg nn_itend 720
	1391	set_namelist namelist_cfg nn_stock 360
[9553]	1392	set_namelist namelist_cfg ln_rstart .true.
	1393	set_namelist namelist_cfg nn_rstctl 2
	1394	set_namelist namelist_cfg jpni 4
	1395	set_namelist namelist_cfg jpnj 8
[10573]	1396	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[13382]	1397	set_namelist namelist_cfg cn_ocerst_in \"WED025_LONG_00000360_restart\"
	1398	set_namelist namelist_ice_cfg cn_icerst_in \"WED025_LONG_00000360_restart_ice\"
[9553]	1399	for (( i=1; i<=$NPROC; i++)) ; do
	1400	L_NPROC=$(( $i - 1 ))
	1401	L_NPROC=`printf "%04d\n" ${L_NPROC}`
[13382]	1402	ln -sf ../LONG/WED025_LONG_00000360_restart_${L_NPROC}.nc .
	1403	ln -sf ../LONG/WED025_LONG_00000360_restart_ice_${L_NPROC}.nc .
[9553]	1404	done
	1405	if [ ${USING_MPMD} == "yes" ] ; then
	1406	set_xio_using_server iodef.xml true
	1407	else
	1408	set_xio_using_server iodef.xml false
	1409	fi
	1410	cd ${SETTE_DIR}
[13382]	1411	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1412	cd ${SETTE_DIR}
	1413	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1414
	1415	## Reproducibility tests
[13382]	1416	export TEST_NAME="REPRO_5_6"
[9658]	1417	cd ${MAIN_DIR}
[9553]	1418	cd ${SETTE_DIR}
	1419	. ./param.cfg
	1420	. ./all_functions.sh
	1421	. ./prepare_exe_dir.sh
[10755]	1422	set_valid_dir
[10698]	1423	clean_valid_dir
[9553]	1424	JOB_FILE=${EXE_DIR}/run_job.sh
	1425	NPROC=32
	1426	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1427	cd ${EXE_DIR}
[13382]	1428	set_namelist namelist_cfg cn_exp \"WED025_56\"
[9553]	1429	set_namelist namelist_cfg nn_it000 1
[13382]	1430	set_namelist namelist_cfg nn_itend 720
	1431	set_namelist namelist_cfg nn_date0 20000115
	1432	set_namelist namelist_cfg jpni 6
	1433	set_namelist namelist_cfg jpnj 7
[10573]	1434	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]	1435	if [ ${USING_MPMD} == "yes" ] ; then
	1436	set_xio_using_server iodef.xml true
	1437	else
	1438	set_xio_using_server iodef.xml false
	1439	fi
	1440	cd ${SETTE_DIR}
[13382]	1441	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1442	cd ${SETTE_DIR}
	1443	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1444
	1445	cd ${SETTE_DIR}
	1446	export TEST_NAME="REPRO_8_4"
	1447	. ./prepare_exe_dir.sh
[10755]	1448	set_valid_dir
[10698]	1449	clean_valid_dir
[9553]	1450	JOB_FILE=${EXE_DIR}/run_job.sh
	1451	NPROC=32
	1452	if [ -f ${JOB_FILE} ] ; then \rm ${JOB_FILE} ; fi
	1453	cd ${EXE_DIR}
[13382]	1454	set_namelist namelist_cfg cn_exp \"WED025_84\"
[9553]	1455	set_namelist namelist_cfg nn_it000 1
[13382]	1456	set_namelist namelist_cfg nn_itend 720
	1457	set_namelist namelist_cfg nn_date0 20000115
[9553]	1458	set_namelist namelist_cfg jpni 8
	1459	set_namelist namelist_cfg jpnj 4
[10573]	1460	set_namelist namelist_cfg sn_cfctl%l_runstat .true.
[9553]	1461	if [ ${USING_MPMD} == "yes" ] ; then
	1462	set_xio_using_server iodef.xml true
	1463	else
	1464	set_xio_using_server iodef.xml false
	1465	fi
	1466	cd ${SETTE_DIR}
[13382]	1467	. ./prepare_job.sh input_WED025.cfg $NPROC ${TEST_NAME} ${MPIRUN_FLAG} ${JOB_FILE} ${NUM_XIOSERVERS} ${NEMO_VALID}
[9553]	1468	cd ${SETTE_DIR}
	1469	. ./fcm_job.sh $NPROC ${JOB_FILE} ${INTERACT_FLAG} ${MPIRUN_FLAG}
	1470	fi
	1471
	1472
[3520]	1473	done

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