Changeset 10244 for NEMO

Timestamp:

2018-10-26T20:33:49+02:00 (5 years ago)

Author:

mathiot

Message:

add README.rst + add param_XC40_METO + mv MetO hardcoded value into param_XC40_METO + adjust rebuild_nemo script

Location:

NEMO/branches/UKMO/dev_rebuild_nemo_compression/REBUILD_NEMO

Files:

• BATCH_TEMPLATES/param_XC40_METO (added)
• README.rst (added)
• rebuild_nemo (modified) (5 diffs)

NEMO/branches/UKMO/dev_rebuild_nemo_compression/REBUILD_NEMO/rebuild_nemo

@@ -12 +12 @@
    echo "  usage: ${0##*/} [-l -p -s -m -n -r -d -x -y -z -t -c] filebase ndomain [rebuild dimensions]"
    echo
-   echo "  flags:    -l                 submit to compute node"
+   echo "  flags:    -l arch            submit to compute node"
    echo "            -p num             use num threads"
    echo "            -s num             split 4D vars into time slice of size num"
@@ -30 +30 @@
 }
 
-while getopts p:s:n:r:d:x:y:z:t:c:lm opt
+while getopts l:p:s:n:r:d:x:y:z:t:c:m opt
 do
   case ${opt} in
       l) 
          BATCH="yes"
-         BATCH_CMD="qsub" 
-         ARCH="XC40_METO"
-         echo "Submitting job to compute node"
+         ARCH=${OPTARG}
       ;;
       p)
@@ -47 +45 @@
       m) 
          NMASK="TRUE"
-         echo "mask"
+         echo ""
+         echo "output is mask using netcdf missing value (_Fillvalue attribute) or 0 if missing value not in the netcdf."
+         echo ""
       ;;
       d)
@@ -142 +142 @@
 
 if [[ ${BATCH} == "yes" ]] ; then
+
+   template_dir=${script_dir}/BATCH_TEMPLATES/
+   archfile=${template_dir}/param_${ARCH}
+   if [ ! -f $archfile ]; then 
+      echo "$archfile is missing, stop 42"
+      echo "check your arch name or add one $archfile file in BATCH_TEMPLATES"
+      exit 42
+   fi
+   . $archfile
+
    batch_file=rebuild_nemo_batch_${ARCH}
+   if [ ! -f ${template_dir}/${batch_file} ]; then 
+      echo "$batch_file is missing, stop 42"
+      echo "check your arch name or add one $batch_file file in BATCH_TEMPLATES"
+      exit 42
+   fi
 
    #Create a modified local copy of the batch submission file
    #The process ID is appended to the end of the file name so it is unique
-   cat ${script_dir}/BATCH_TEMPLATES/${batch_file} | sed -e"s/NTHREADS/${OMP_NUM_THREADS}/" \
+   cat ${template_dir}/${batch_file} | sed -e"s/NTHREADS/${OMP_NUM_THREADS}/" \
       -e"s/MEMORY/${MEMORY}/" \
       -e"s:INDIR:${script_dir}:" \
@@ -153 +168 @@
    
    #Submit the job
+   echo "Submitting job to compute node"
    $BATCH_CMD ${batch_file}_$$.sh