Ignore:
Timestamp:
2018-11-07T12:04:15+01:00 (2 years ago)
Author:
nicolasmartin
Message:

Various improvments for quick start guide

  • implementation of Rtd theme (Read the Docs) with custom layout and style file
  • add reviewed BibTeX entries for NEMO references with DOI (manuals, guide, development strategy)
  • enhancement of bibliography management and configuration file for guide building
  • standardisation of headings markup
  • numerous edits
Location:
NEMO/trunk/cfgs/AGRIF_DEMO
Files:
2 edited

Legend:

Unmodified
Added
Removed
  • NEMO/trunk/cfgs/AGRIF_DEMO/README.rst

    r10201 r10279  
    1 Embedded zooms with AGRIF 
    2 ========================= 
    3  
    4 .. include:: .global.rst 
     1********************** 
     2Embedded zooms (AGRIF) 
     3********************** 
    54 
    65.. contents:: 
    76   :local: 
    87 
    9 -------- 
    108Overview 
    11 -------- 
     9======== 
    1210 
    1311AGRIF (Adaptive Grid Refinement In Fortran) is a library that allows the seamless space and time refinement over 
     
    1917For a more technical description of the library itself, please refer to http://agrif.imag.fr. 
    2018 
    21 ----------- 
    2219Compilation 
    23 ----------- 
     20=========== 
    2421 
    2522Activating AGRIF requires to append the cpp key ``key_agrif`` at compilation time:  
     
    3431saved arrays may be switched in memory space from one domain to an other. 
    3532 
    36 -------------------------------- 
    3733Definition of the grid hierarchy 
    38 -------------------------------- 
     34================================ 
    3935 
    4036An additional text file ``AGRIF_FixedGrids.in`` is required at run time. 
     
    6864Defining for instance a circumpolar zoom in a global model is therefore not possible.  
    6965 
    70 ------------- 
    7166Preprocessing 
    72 ------------- 
     67============= 
    7368 
    7469Knowing the refinement factors and area, a ``NESTING`` pre-processing tool may help to create needed input files 
     
    7974These correspond to the namelists used to create ``AGRIF_DEMO`` inputs. 
    8075 
    81 ---------------- 
    8276Namelist options 
    83 ---------------- 
     77================ 
    8478 
    8579Each child grid expects to read its own namelist so that different numerical choices can be made 
     
    104982 x refinement factor (from i=1+nbghostcells+1 to i=1+nbghostcells+sponge_area)  
    10599 
    106 ---------- 
    107100References 
    108 ---------- 
     101========== 
    109102 
    110103.. bibliography:: zooms.bib 
    111104   :all: 
    112105   :style: unsrt 
     106   :labelprefix: A 
     107   :keyprefix: a- 
  • NEMO/trunk/cfgs/AGRIF_DEMO/zooms.bib

    r10201 r10279  
    1 @article{DEBREU20121, 
     1@article{DEBREU2012, 
    22   title = "Two-way nesting in split-explicit ocean models: Algorithms, implementation and validation", 
    33   journal = "Ocean Modelling", 
     
    1111} 
    1212 
    13 @article{PENVEN2006157, 
     13@article{PENVEN2006, 
    1414   title = "Evaluation and application of the {ROMS} 1-way embedding procedure to the central california upwelling system", 
    1515   journal = "Ocean Modelling", 
     
    2424} 
    2525 
    26 @article{doi:10.1175/1520-0485(1991)021<0205:ANPEMF>2.0.CO;2, 
     26@article{SPALL1991, 
    2727   author = {Spall, Michael A. and Holland, William R.}, 
    2828   title = {A Nested Primitive Equation Model for Oceanic Applications}, 
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