New URL for NEMO forge!   http://forge.nemo-ocean.eu

Since March 2022 along with NEMO 4.2 release, the code development moved to a self-hosted GitLab.
This present forge is now archived and remained online for history.
Changeset 10279 for NEMO/trunk/cfgs/SHARED – NEMO

Ignore:
Timestamp:
2018-11-07T12:04:15+01:00 (5 years ago)
Author:
nicolasmartin
Message:

Various improvments for quick start guide

  • implementation of Rtd theme (Read the Docs) with custom layout and style file
  • add reviewed BibTeX entries for NEMO references with DOI (manuals, guide, development strategy)
  • enhancement of bibliography management and configuration file for guide building
  • standardisation of headings markup
  • numerous edits
File:
1 edited

Legend:

Unmodified
Added
Removed

  • NEMO/trunk/cfgs/SHARED/README.rst

    r10201 r10279  
    1 Inputs-Outputs with XIOS 
    2 ======================== 
    3  
    4 .. include:: .global.rst 
     1****************** 
     2Diagnostics (XIOS) 
     3****************** 
    54 
    65.. contents:: 
     6   :local: 
    77 
    88| Output of diagnostics in NEMO is usually done using XIOS. 
    … …  
    1010  some simple arithmetic or regridding is carried out in parallel to the NEMO model run. 
    1111| This page gives a basic introduction to using XIOS with NEMO. 
    12   Much more information is available from the XIOS homepage above and from the `Reference Manual`_. 
     12  Much more information is available from the XIOS homepage above and from the `NEMO manual`_. 
    1313 
    1414Use of XIOS for diagnostics is activated using the pre-compiler key ``key_iomput``. 
    1515The default version of XIOS is the 2.0 release.  
    1616 
    17 ------------------------------ 
    1817Extracting and installing XIOS 
    19 ------------------------------ 
     18============================== 
    2019 
    21201. Install the NetCDF4 library. 
    … …  
    2827      $ svn co ​http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.0 xios-2.0 
    2928 
    30    and follow the instructions in `XIOS documentation`_ to compile it. 
    31    If you find problems at this stage, support can be found by subscribing to the `XIOS users mailing list`_ and 
    32    sending a mail message to it.  
     29   and follow the instructions in :xios:`XIOS documentation <wiki/documentation>` to compile it. 
     30   If you find problems at this stage, support can be found by subscribing to the `XIOS mailing list 
     31   <http://forge.ipsl.jussieu.fr/mailman/listinfo.cgi/xios-users>`_ 
     32   and sending a mail message to it.  
    3333 
    34 --------- 
    3534Namelists 
    36 --------- 
     35========= 
    3736 
    3837XIOS is controlled using xml input files that should be copied to your model run directory before 
    … …  
    4746Note that the ``domain_def.xml`` file is also different for XIOS 2.0. 
    4847 
    49 ----- 
    5048Modes 
    51 ----- 
     49===== 
    5250 
    5351Detached Mode 
    … …  
    8179the total number of cores is larger than the number of grid points in the j direction then the model run will fail. 
    8280 
    83 ------------------------------ 
    84 Adding new diagnostics to NEMO 
    85 ------------------------------ 
     81Adding new diagnostics 
     82====================== 
    8683 
    8784If you want to add a NEMO diagnostic to the NEMO code you will need to do the following: 
Note: See TracChangeset for help on using the changeset viewer.