- Timestamp:
- 2018-11-21T11:25:53+01:00 (5 years ago)
- Location:
- NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z
- Files:
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- 2 deleted
- 12 edited
- 2 copied
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p4zbio.F90 (modified) (1 diff)
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p4zche.F90 (modified) (3 diffs)
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p4zice.F90 (deleted)
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p4zlim.F90 (copied) (copied from NEMO/trunk/src/TOP/PISCES/P4Z/p4zlim.F90)
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p4zmeso.F90 (modified) (1 diff)
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p4zmicro.F90 (modified) (1 diff)
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p4zmort.F90 (modified) (1 diff)
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p4zprod.F90 (modified) (1 diff)
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p4zrem.F90 (modified) (3 diffs)
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p4zsed.F90 (modified) (5 diffs)
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p4zsms.F90 (modified) (4 diffs)
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p5zice.F90 (deleted)
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p5zlim.F90 (copied) (copied from NEMO/trunk/src/TOP/PISCES/P4Z/p5zlim.F90)
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p5zmicro.F90 (modified) (1 diff)
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p5zmort.F90 (modified) (1 diff)
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p5zprod.F90 (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zbio.F90
r10069 r10345 15 15 USE p4zsink ! vertical flux of particulate matter due to sinking 16 16 USE p4zopt ! optical model 17 USE p4z ice! Co-limitations of differents nutrients17 USE p4zlim ! Co-limitations of differents nutrients 18 18 USE p4zprod ! Growth rate of the 2 phyto groups 19 19 USE p4zmort ! Mortality terms for phytoplankton 20 20 USE p4zmicro ! Sources and sinks of microzooplankton 21 21 USE p4zmeso ! Sources and sinks of mesozooplankton 22 USE p5z ice! Co-limitations of differents nutrients22 USE p5zlim ! Co-limitations of differents nutrients 23 23 USE p5zprod ! Growth rate of the 2 phyto groups 24 24 USE p5zmort ! Mortality terms for phytoplankton -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zche.F90
r10068 r10345 37 37 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: tempis ! In situ temperature 38 38 39 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: akb3 !: ???40 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: akw3 !: ???41 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: akf3 !: ???42 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aks3 !: ???43 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak1p3 !: ???44 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak2p3 !: ???45 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak3p3 !: ???46 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aksi3 !: ???47 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: borat !: ???48 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fluorid !: ???49 REAL(wp), ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: sulfat !: ???39 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: akb3 !: ??? 40 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: akw3 !: ??? 41 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: akf3 !: ??? 42 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aks3 !: ??? 43 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak1p3 !: ??? 44 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak2p3 !: ??? 45 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: ak3p3 !: ??? 46 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: aksi3 !: ??? 47 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: borat !: ??? 48 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: fluorid !: ??? 49 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,:,:) :: sulfat !: ??? 50 50 51 51 !!* Variable for chemistry of the CO2 cycle … … 233 233 END DO 234 234 235 236 237 235 ! CHEMICAL CONSTANTS - DEEP OCEAN 238 236 ! ------------------------------- … … 449 447 ! 450 448 END SUBROUTINE p4z_che 451 452 449 453 450 SUBROUTINE ahini_for_at(p_hini) -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zmeso.F90
r10069 r10345 108 108 zdenom = zfoodlim / ( xkgraz2 + zfoodlim ) 109 109 zdenom2 = zdenom / ( zfood + rtrn ) 110 zgraze2 = grazrat2 * xstep * tgfunc2(ji,jj,jk) * trb(ji,jj,jk,jpmes) 110 zgraze2 = grazrat2 * xstep * tgfunc2(ji,jj,jk) * trb(ji,jj,jk,jpmes) * (1. - nitrfac(ji,jj,jk)) 111 111 112 112 zgrazd = zgraze2 * xprefc * zcompadi * zdenom2 -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zmicro.F90
r10069 r10345 14 14 USE trc ! passive tracers common variables 15 15 USE sms_pisces ! PISCES Source Minus Sink variables 16 USE p4z ice! Co-limitations16 USE p4zlim ! Co-limitations 17 17 USE p4zprod ! production 18 18 USE iom ! I/O manager -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zmort.F90
r10068 r10345 14 14 USE sms_pisces ! PISCES Source Minus Sink variables 15 15 USE p4zprod ! Primary productivity 16 USE p4z ice! Phytoplankton limitation terms16 USE p4zlim ! Phytoplankton limitation terms 17 17 USE prtctl_trc ! print control for debugging 18 18 -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zprod.F90
r10314 r10345 15 15 USE trc ! passive tracers common variables 16 16 USE sms_pisces ! PISCES Source Minus Sink variables 17 USE p4z ice! Co-limitations of differents nutrients17 USE p4zlim ! Co-limitations of differents nutrients 18 18 USE prtctl_trc ! print control for debugging 19 19 USE iom ! I/O manager -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zrem.F90
r10069 r10345 17 17 USE p4zche ! chemical model 18 18 USE p4zprod ! Growth rate of the 2 phyto groups 19 USE p4z ice19 USE p4zlim 20 20 USE prtctl_trc ! print control for debugging 21 21 USE iom ! I/O manager … … 116 116 zammonic = zremik * nitrfac(ji,jj,jk) * trb(ji,jj,jk,jpdoc) 117 117 denitr(ji,jj,jk) = zammonic * ( 1. - nitrfac2(ji,jj,jk) ) 118 zoxyrem = zammonic * nitrfac2(ji,jj,jk) 118 denitr(ji,jj,jk) = MIN( ( trb(ji,jj,jk,jpno3) - rtrn ) / rdenit, denitr(ji,jj,jk) ) 119 zoxyrem = zammonic - denitr(ji,jj,jk) 119 120 ! 120 121 zolimi (ji,jj,jk) = MAX( 0.e0, zolimi (ji,jj,jk) ) … … 189 190 & / ( 1.+ emoy(ji,jj,jk) ) * ( 1. + fr_i(ji,jj) * emoy(ji,jj,jk) ) 190 191 zdenitnh4 = nitrif * xstep * trb(ji,jj,jk,jpnh4) * nitrfac(ji,jj,jk) 192 zdenitnh4 = MIN( ( trb(ji,jj,jk,jpno3) - rtrn ) / rdenita, zdenitnh4 ) 191 193 ! Update of the tracers trends 192 194 ! ---------------------------- -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zsed.F90
r10127 r10345 14 14 USE trc ! passive tracers common variables 15 15 USE sms_pisces ! PISCES Source Minus Sink variables 16 USE p4z ice! Co-limitations of differents nutrients16 USE p4zlim ! Co-limitations of differents nutrients 17 17 USE p4zsbc ! External source of nutrients 18 18 USE p4zint ! interpolation and computation of various fields 19 USE sed ! Sediment module 19 20 USE iom ! I/O manager 20 21 USE prtctl_trc ! print control for debugging … … 29 30 REAL(wp), PUBLIC, ALLOCATABLE, SAVE, DIMENSION(:,: ) :: sdenit !: Nitrate reduction in the sediments 30 31 REAL(wp) :: r1_rday !: inverse of rday 32 LOGICAL, SAVE :: lk_sed 31 33 32 34 !!---------------------------------------------------------------------- … … 70 72 ! 71 73 IF( ln_timing ) CALL timing_start('p4z_sed') 74 ! 75 IF( kt == nittrc000 .AND. knt == 1 ) THEN 76 r1_rday = 1. / rday 77 IF (ln_sediment .AND. ln_sed_2way) THEN 78 lk_sed = .TRUE. 79 ELSE 80 lk_sed = .FALSE. 81 ENDIF 82 ENDIF 72 83 ! 73 84 IF( kt == nittrc000 .AND. knt == 1 ) r1_rday = 1. / rday … … 185 196 ENDIF 186 197 187 ! Add the external input of iron from sediment mobilization188 ! ------------------------------------------------------189 IF( ln_ironsed ) THEN190 tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + ironsed(:,:,:) * rfact2191 IF( ln_ligand ) tra(:,:,:,jpfep) = tra(:,:,:,jpfep) + ( ironsed(:,:,:) * fep_rats ) * rfact2192 !193 IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "Ironsed" ) ) &194 & CALL iom_put( "Ironsed", ironsed(:,:,:) * 1.e+3 * tmask(:,:,:) ) ! iron inputs from sediments195 ENDIF196 197 198 ! Add the external input of iron from hydrothermal vents 198 199 ! ------------------------------------------------------ … … 231 232 232 233 IF( .NOT.lk_sed ) THEN 234 ! 235 ! Add the external input of iron from sediment mobilization 236 ! ------------------------------------------------------ 237 IF( ln_ironsed ) THEN 238 tra(:,:,:,jpfer) = tra(:,:,:,jpfer) + ironsed(:,:,:) * rfact2 239 IF( ln_ligand ) tra(:,:,:,jpfep) = tra(:,:,:,jpfep) + ( ironsed(:,:,:) * fep_rats ) * rfact2 240 ! 241 IF( lk_iomput .AND. knt == nrdttrc .AND. iom_use( "Ironsed" ) ) & 242 & CALL iom_put( "Ironsed", ironsed(:,:,:) * 1.e+3 * tmask(:,:,:) ) ! iron inputs from sediments 243 ENDIF 244 233 245 ! Computation of the sediment denitrification proportion: The metamodel from midlleburg (2006) is being used 234 246 ! Computation of the fraction of organic matter that is permanently buried from Dunne's model -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p4zsms.F90
r10314 r10345 74 74 CALL p4z_che ! initialize the chemical constants 75 75 CALL ahini_for_at(hi) ! set PH at kt=nit000 76 t_oce_co2_flx_cum = 0._wp 76 77 ELSE 77 78 CALL p4z_rst( nittrc000, 'READ' ) !* read or initialize all required fields … … 101 102 ENDIF 102 103 ! 104 IF( ll_sbc ) CALL p4z_sbc( kt ) ! external sources of nutrients 105 ! 106 #if ! defined key_sed_off 103 107 CALL p4z_che ! computation of chemical constants 104 108 CALL p4z_int( kt ) ! computation of various rates for biogeochemistry 105 109 ! 106 IF( ll_sbc ) CALL p4z_sbc( kt ) ! external sources of nutrients107 108 110 DO jnt = 1, nrdttrc ! Potential time splitting if requested 109 111 ! … … 149 151 END DO 150 152 END IF 151 ! 152 IF( lk_sed ) THEN 153 #endif 154 ! 155 IF( ln_sediment ) THEN 153 156 ! 154 157 CALL sed_model( kt ) ! Main program of Sediment model 158 ! 159 IF( ln_top_euler ) THEN 160 DO jn = jp_pcs0, jp_pcs1 161 trn(:,:,:,jn) = trb(:,:,:,jn) 162 END DO 163 ENDIF 155 164 ! 156 165 ENDIF … … 352 361 IF(lwp) WRITE(numout,*) 353 362 354 IF( cn_cfg == "orca" .AND. .NOT. lk_c1d ) THEN ! ORCA configuration (not 1D) ! 355 ! ! --------------------------- ! 356 ! set total alkalinity, phosphate, nitrate & silicate 357 zarea = 1._wp / glob_sum( 'p4zsms', cvol(:,:,:) ) * 1e6 358 359 zalksumn = glob_sum( 'p4zsms', trn(:,:,:,jptal) * cvol(:,:,:) ) * zarea 360 zpo4sumn = glob_sum( 'p4zsms', trn(:,:,:,jppo4) * cvol(:,:,:) ) * zarea * po4r 361 zno3sumn = glob_sum( 'p4zsms', trn(:,:,:,jpno3) * cvol(:,:,:) ) * zarea * rno3 362 zsilsumn = glob_sum( 'p4zsms', trn(:,:,:,jpsil) * cvol(:,:,:) ) * zarea 363 IF( cn_cfg == "ORCA" .OR. cn_cfg == "orca") THEN 364 IF( .NOT. lk_c1d ) THEN ! ORCA configuration (not 1D) ! 365 ! ! --------------------------- ! 366 ! set total alkalinity, phosphate, nitrate & silicate 367 zarea = 1._wp / glob_sum( 'p4zsms', cvol(:,:,:) ) * 1e6 368 369 zalksumn = glob_sum( 'p4zsms', trn(:,:,:,jptal) * cvol(:,:,:) ) * zarea 370 zpo4sumn = glob_sum( 'p4zsms', trn(:,:,:,jppo4) * cvol(:,:,:) ) * zarea * po4r 371 zno3sumn = glob_sum( 'p4zsms', trn(:,:,:,jpno3) * cvol(:,:,:) ) * zarea * rno3 372 zsilsumn = glob_sum( 'p4zsms', trn(:,:,:,jpsil) * cvol(:,:,:) ) * zarea 363 373 364 IF(lwp) WRITE(numout,*) ' TALKN mean : ', zalksumn365 trn(:,:,:,jptal) = trn(:,:,:,jptal) * alkmean / zalksumn366 367 IF(lwp) WRITE(numout,*) ' PO4N mean : ', zpo4sumn368 trn(:,:,:,jppo4) = trn(:,:,:,jppo4) * po4mean / zpo4sumn369 370 IF(lwp) WRITE(numout,*) ' NO3N mean : ', zno3sumn371 trn(:,:,:,jpno3) = trn(:,:,:,jpno3) * no3mean / zno3sumn372 373 IF(lwp) WRITE(numout,*) ' SiO3N mean : ', zsilsumn374 trn(:,:,:,jpsil) = MIN( 400.e-6,trn(:,:,:,jpsil) * silmean / zsilsumn )375 !376 !377 IF( .NOT. ln_top_euler ) THEN378 zalksumb = glob_sum( 'p4zsms', trb(:,:,:,jptal) * cvol(:,:,:) ) * zarea379 zpo4sumb = glob_sum( 'p4zsms', trb(:,:,:,jppo4) * cvol(:,:,:) ) * zarea * po4r380 zno3sumb = glob_sum( 'p4zsms', trb(:,:,:,jpno3) * cvol(:,:,:) ) * zarea * rno3381 zsilsumb = glob_sum( 'p4zsms', trb(:,:,:,jpsil) * cvol(:,:,:) ) * zarea374 IF(lwp) WRITE(numout,*) ' TALKN mean : ', zalksumn 375 trn(:,:,:,jptal) = trn(:,:,:,jptal) * alkmean / zalksumn 376 377 IF(lwp) WRITE(numout,*) ' PO4N mean : ', zpo4sumn 378 trn(:,:,:,jppo4) = trn(:,:,:,jppo4) * po4mean / zpo4sumn 379 380 IF(lwp) WRITE(numout,*) ' NO3N mean : ', zno3sumn 381 trn(:,:,:,jpno3) = trn(:,:,:,jpno3) * no3mean / zno3sumn 382 383 IF(lwp) WRITE(numout,*) ' SiO3N mean : ', zsilsumn 384 trn(:,:,:,jpsil) = MIN( 400.e-6,trn(:,:,:,jpsil) * silmean / zsilsumn ) 385 ! 386 ! 387 IF( .NOT. ln_top_euler ) THEN 388 zalksumb = glob_sum( 'p4zsms', trb(:,:,:,jptal) * cvol(:,:,:) ) * zarea 389 zpo4sumb = glob_sum( 'p4zsms', trb(:,:,:,jppo4) * cvol(:,:,:) ) * zarea * po4r 390 zno3sumb = glob_sum( 'p4zsms', trb(:,:,:,jpno3) * cvol(:,:,:) ) * zarea * rno3 391 zsilsumb = glob_sum( 'p4zsms', trb(:,:,:,jpsil) * cvol(:,:,:) ) * zarea 382 392 383 IF(lwp) WRITE(numout,*) ' ' 384 IF(lwp) WRITE(numout,*) ' TALKB mean : ', zalksumb 385 trb(:,:,:,jptal) = trb(:,:,:,jptal) * alkmean / zalksumb 386 387 IF(lwp) WRITE(numout,*) ' PO4B mean : ', zpo4sumb 388 trb(:,:,:,jppo4) = trb(:,:,:,jppo4) * po4mean / zpo4sumb 389 390 IF(lwp) WRITE(numout,*) ' NO3B mean : ', zno3sumb 391 trb(:,:,:,jpno3) = trb(:,:,:,jpno3) * no3mean / zno3sumb 392 393 IF(lwp) WRITE(numout,*) ' SiO3B mean : ', zsilsumb 394 trb(:,:,:,jpsil) = MIN( 400.e-6,trb(:,:,:,jpsil) * silmean / zsilsumb ) 393 IF(lwp) WRITE(numout,*) ' ' 394 IF(lwp) WRITE(numout,*) ' TALKB mean : ', zalksumb 395 trb(:,:,:,jptal) = trb(:,:,:,jptal) * alkmean / zalksumb 396 397 IF(lwp) WRITE(numout,*) ' PO4B mean : ', zpo4sumb 398 trb(:,:,:,jppo4) = trb(:,:,:,jppo4) * po4mean / zpo4sumb 399 400 IF(lwp) WRITE(numout,*) ' NO3B mean : ', zno3sumb 401 trb(:,:,:,jpno3) = trb(:,:,:,jpno3) * no3mean / zno3sumb 402 403 IF(lwp) WRITE(numout,*) ' SiO3B mean : ', zsilsumb 404 trb(:,:,:,jpsil) = MIN( 400.e-6,trb(:,:,:,jpsil) * silmean / zsilsumb ) 405 ENDIF 395 406 ENDIF 396 407 ! -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p5zmicro.F90
r10070 r10345 15 15 USE trc ! passive tracers common variables 16 16 USE sms_pisces ! PISCES Source Minus Sink variables 17 USE p5z ice! Phytoplankton limitation terms17 USE p5zlim ! Phytoplankton limitation terms 18 18 USE iom ! I/O manager 19 19 USE prtctl_trc ! print control for debugging -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p5zmort.F90
r10070 r10345 14 14 USE trc ! passive tracers common variables 15 15 USE sms_pisces ! PISCES Source Minus Sink variables 16 USE p5z ice! Phytoplankton limitation terms16 USE p5zlim ! Phytoplankton limitation terms 17 17 USE prtctl_trc ! print control for debugging 18 18 -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/src/TOP/PISCES/P4Z/p5zprod.F90
r10314 r10345 16 16 USE trc ! passive tracers common variables 17 17 USE sms_pisces ! PISCES Source Minus Sink variables 18 USE p5z ice! Co-limitations of differents nutrients18 USE p5zlim ! Co-limitations of differents nutrients 19 19 USE prtctl_trc ! print control for debugging 20 20 USE iom ! I/O manager
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