- Timestamp:
- 2018-12-03T12:45:01+01:00 (5 years ago)
- Location:
- NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED
- Files:
-
- 4 edited
-
field_def_nemo-oce.xml (modified) (1 diff)
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field_def_nemo-pisces.xml (modified) (1 diff)
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namelist_pisces_ref (modified) (10 diffs)
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namelist_ref (modified) (2 diffs)
Legend:
- Unmodified
- Added
- Removed
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NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-oce.xml
r9990 r10368 77 77 <!-- variables available with MLE --> 78 78 <field id="Lf_NHpf" long_name="MLE: Lf = N H / f" unit="m" /> 79 80 <!-- next variables available with ln_zad_Aimp=.true. --> 81 <field id="Courant" long_name="Courant number" unit="#" grid_ref="grid_T_3D" /> 82 <field id="wimp" long_name="Implicit vertical velocity" unit="m/s" grid_ref="grid_T_3D" /> 83 <field id="wexp" long_name="Explicit vertical velocity" unit="m/s" grid_ref="grid_T_3D" /> 84 <field id="wi_cff" long_name="Fraction of implicit vertical velocity" unit="#" grid_ref="grid_T_3D" /> 79 85 80 86 <!-- next variables available with key_diahth --> -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-pisces.xml
r10345 r10368 240 240 <field id="Irondep" long_name="Iron deposition from dust" unit="mol/m2/s" /> 241 241 <field id="Ironsed" long_name="Iron deposition from sediment" unit="mol/m2/s" grid_ref="grid_T_3D" /> 242 <field id="FESCAV" long_name="Scavenging of Iron" unit="mmol-Fe/m3/s" grid_ref="grid_T_3D" /> 243 <field id="FECOLL" long_name="Colloidal Pumping of FeL" unit="mmol-FeL/m3/s" grid_ref="grid_T_3D" /> 244 <field id="LGWCOLL" long_name="Coagulation loss of ligands" unit="mmol-L/m3/s" grid_ref="grid_T_3D" /> 245 <field id="REMINF" long_name="Oxic remineralization suppy of Fe" unit="mmol-Fe/m3/s" grid_ref="grid_T_3D" /> 246 <field id="BACT" long_name="Bacterial Biomass" unit="mmol/m3" grid_ref="grid_T_3D" /> 247 <field id="FEBACT" long_name="Bacterial uptake of Fe" unit="molFe/m3/s" grid_ref="grid_T_3D" /> 248 <field id="LPRODR" long_name="OM remineralisation ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 249 <field id="LPRODP" long_name="phytoplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 250 <field id="LIGREM" long_name="Remineralisation loss of ligands" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 251 <field id="LIGPR" long_name="Photochemical loss of ligands" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 252 <field id="LDETP" long_name="Ligand destruction during phytoplankton uptake" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 253 <field id="LPRODZ2" long_name="mesozooplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 254 <field id="LPRODZ" long_name="microzooplankton ligand production rate" unit="nmol-L/m3/s" grid_ref="grid_T_3D" /> 255 <field id="FEZOO" long_name="microzooplankton iron recycling rate" unit="nmol-FeL/m3/s" grid_ref="grid_T_3D" /> 256 <field id="FEZOO2" long_name="mesozooplankton iron recycling rate" unit="nmol-FeL/m3/s" grid_ref="grid_T_3D" /> 242 257 243 258 <!-- dbio_T on T grid : variables available with diaar5 --> -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_pisces_ref
r10345 r10368 55 55 ! ! ln_ligand enabled 56 56 wfep = 0.2 ! FeP sinking speed 57 ldocp = 1.E- 5! Phyto ligand production per unit doc58 ldocz = 1.E- 5! Zoo ligand production per unit doc57 ldocp = 1.E-4 ! Phyto ligand production per unit doc 58 ldocz = 1.E-4 ! Zoo ligand production per unit doc 59 59 lthet = 0.5 ! Proportional loss of ligands due to Fe uptake 60 60 ! ! ln_p5z enabled … … 210 210 resrat2 = 0.005 ! exsudation rate of mesozooplankton 211 211 mzrat2 = 0.03 ! mesozooplankton mortality rate 212 xpref c= 1. ! mesozoo preference for diatoms213 xpref p= 0.3 ! mesozoo preference for nanophyto.214 xpref z= 1. ! mesozoo preference for microzoo.215 xpref poc= 0.3 ! mesozoo preference for poc212 xpref2d = 1. ! mesozoo preference for diatoms 213 xpref2n = 0.3 ! mesozoo preference for nanophyto. 214 xpref2z = 1. ! mesozoo preference for microzoo. 215 xpref2c = 0.3 ! mesozoo preference for poc 216 216 xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton 217 217 xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton … … 221 221 xkgraz2 = 20.E-6 ! half saturation constant for meso grazing 222 222 epsher2 = 0.35 ! Efficicency of Mesozoo growth 223 epsher2min = 0.35 ! Minimum efficiency of mesozoo growth 223 224 sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM 224 225 unass2 = 0.3 ! non assimilated fraction of P by mesozoo … … 246 247 xkgraz2 = 20.E-6 ! half sturation constant for meso grazing 247 248 epsher2 = 0.5 ! Efficicency of Mesozoo growth 249 epsher2min = 0.2 ! Minimum efficiency of mesozoo growth 248 250 ssigma2 = 0.5 ! Fraction excreted as semi-labile DOM 249 251 srespir2 = 0.2 ! Active respiration … … 260 262 resrat = 0.03 ! exsudation rate of zooplankton 261 263 mzrat = 0.004 ! zooplankton mortality rate 262 xpref 2c= 0.1 ! Microzoo preference for POM263 xpref 2p= 1. ! Microzoo preference for Nanophyto264 xpref 2d = 0.5! Microzoo preference for Diatoms264 xprefc = 0.1 ! Microzoo preference for POM 265 xprefn = 1. ! Microzoo preference for Nanophyto 266 xprefd = 0.6 ! Microzoo preference for Diatoms 265 267 xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton 266 268 xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton … … 269 271 xkgraz = 20.E-6 ! half sturation constant for grazing 270 272 epsher = 0.3 ! Efficiency of microzoo growth 273 epshermin = 0.3 ! Minimum efficiency of microzoo growth 271 274 sigma1 = 0.6 ! Fraction of microzoo excretion as DOM 272 275 unass = 0.3 ! non assimilated fraction of phyto by zoo … … 293 296 xkgraz = 20.E-6 ! half sturation constant for grazing 294 297 epsher = 0.5 ! Efficiency of microzoo growth 298 epshermin = 0.2 ! Minimum efficiency of microzoo growth 295 299 ssigma = 0.5 ! Fraction excreted as semi-labile DOM 296 300 srespir = 0.2 ! Active respiration … … 304 308 ln_fechem = .false. ! complex iron chemistry ( T/F ) 305 309 ln_ligvar = .false. ! variable ligand concentration 306 ln_fecolloid = .false. ! variable colloidal fraction307 310 xlam1 = 0.005 ! scavenging rate of Iron 308 311 xlamdust = 150.0 ! Scavenging rate of dust 309 312 ligand = 0.6E-9 ! Ligands concentration 310 kfep = 0. 313 kfep = 0.01 ! Nanoparticle formation rate constant 311 314 / 312 315 !----------------------------------------------------------------------- … … 383 386 fep_rats = 1. ! Fep/Fer ratio from sed sources 384 387 fep_rath = 1. ! Fep/Fer ratio from sed hydro sources 388 rdustfep = 0.0 ! Fraction of dust that is FeP 385 389 lgw_rath = 0.5 ! Weak ligand ratio from sed hydro sources 386 390 / … … 389 393 !----------------------------------------------------------------------- 390 394 rfep = 0.001 ! Dissolution rate of FeP 391 rlgw = 1 .! Lifetime (years) of weak ligands395 rlgw = 100. ! Lifetime (years) of weak ligands 392 396 rlig = 1.E-4 ! Remin ligand production per unit C 393 397 prlgw = 1.E-4 ! Photolysis of weak ligand 394 rlgs = 1 000.! Lifetime (years) of strong ligands398 rlgs = 1. ! Lifetime (years) of strong ligands 395 399 / 396 400 !----------------------------------------------------------------------- -
NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_ref
r10345 r10368 972 972 &namzdf ! vertical physics manager (default: NO selection) 973 973 !----------------------------------------------------------------------- 974 ! ! adaptive-implicit vertical advection 975 ln_zad_Aimp = .false. ! Courant number dependent scheme (Shchepetkin 2015) 976 ! 974 977 ! ! type of vertical closure (required) 975 978 ln_zdfcst = .false. ! constant mixing … … 1292 1295 ! ! buffer blocking send or immediate non-blocking sends, resp. 1293 1296 nn_buffer = 0 ! size in bytes of exported buffer ('B' case), 0 no exportation 1294 ln_nnogather = . false. ! activate code to avoid mpi_allgather use at the northfold1297 ln_nnogather = .true. ! activate code to avoid mpi_allgather use at the northfold 1295 1298 jpni = 0 ! jpni number of processors following i (set automatically if < 1) 1296 1299 jpnj = 0 ! jpnj number of processors following j (set automatically if < 1)
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