Index: NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-oce.xml
===================================================================
--- NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-oce.xml (revision 10345)
+++ NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-oce.xml (revision 10368)
@@ -77,4 +77,10 @@
+
+
+
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+
Index: NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-pisces.xml
===================================================================
--- NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-pisces.xml (revision 10345)
+++ NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/field_def_nemo-pisces.xml (revision 10368)
@@ -240,4 +240,19 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
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Index: NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_pisces_ref
===================================================================
--- NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_pisces_ref (revision 10345)
+++ NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_pisces_ref (revision 10368)
@@ -55,6 +55,6 @@
! ! ln_ligand enabled
wfep = 0.2 ! FeP sinking speed
- ldocp = 1.E-5 ! Phyto ligand production per unit doc
- ldocz = 1.E-5 ! Zoo ligand production per unit doc
+ ldocp = 1.E-4 ! Phyto ligand production per unit doc
+ ldocz = 1.E-4 ! Zoo ligand production per unit doc
lthet = 0.5 ! Proportional loss of ligands due to Fe uptake
! ! ln_p5z enabled
@@ -210,8 +210,8 @@
resrat2 = 0.005 ! exsudation rate of mesozooplankton
mzrat2 = 0.03 ! mesozooplankton mortality rate
- xprefc = 1. ! mesozoo preference for diatoms
- xprefp = 0.3 ! mesozoo preference for nanophyto.
- xprefz = 1. ! mesozoo preference for microzoo.
- xprefpoc = 0.3 ! mesozoo preference for poc
+ xpref2d = 1. ! mesozoo preference for diatoms
+ xpref2n = 0.3 ! mesozoo preference for nanophyto.
+ xpref2z = 1. ! mesozoo preference for microzoo.
+ xpref2c = 0.3 ! mesozoo preference for poc
xthresh2zoo = 1E-8 ! zoo feeding threshold for mesozooplankton
xthresh2dia = 1E-8 ! diatoms feeding threshold for mesozooplankton
@@ -221,4 +221,5 @@
xkgraz2 = 20.E-6 ! half saturation constant for meso grazing
epsher2 = 0.35 ! Efficicency of Mesozoo growth
+ epsher2min = 0.35 ! Minimum efficiency of mesozoo growth
sigma2 = 0.6 ! Fraction of mesozoo excretion as DOM
unass2 = 0.3 ! non assimilated fraction of P by mesozoo
@@ -246,4 +247,5 @@
xkgraz2 = 20.E-6 ! half sturation constant for meso grazing
epsher2 = 0.5 ! Efficicency of Mesozoo growth
+ epsher2min = 0.2 ! Minimum efficiency of mesozoo growth
ssigma2 = 0.5 ! Fraction excreted as semi-labile DOM
srespir2 = 0.2 ! Active respiration
@@ -260,7 +262,7 @@
resrat = 0.03 ! exsudation rate of zooplankton
mzrat = 0.004 ! zooplankton mortality rate
- xpref2c = 0.1 ! Microzoo preference for POM
- xpref2p = 1. ! Microzoo preference for Nanophyto
- xpref2d = 0.5 ! Microzoo preference for Diatoms
+ xprefc = 0.1 ! Microzoo preference for POM
+ xprefn = 1. ! Microzoo preference for Nanophyto
+ xprefd = 0.6 ! Microzoo preference for Diatoms
xthreshdia = 1.E-8 ! Diatoms feeding threshold for microzooplankton
xthreshphy = 1.E-8 ! Nanophyto feeding threshold for microzooplankton
@@ -269,4 +271,5 @@
xkgraz = 20.E-6 ! half sturation constant for grazing
epsher = 0.3 ! Efficiency of microzoo growth
+ epshermin = 0.3 ! Minimum efficiency of microzoo growth
sigma1 = 0.6 ! Fraction of microzoo excretion as DOM
unass = 0.3 ! non assimilated fraction of phyto by zoo
@@ -293,4 +296,5 @@
xkgraz = 20.E-6 ! half sturation constant for grazing
epsher = 0.5 ! Efficiency of microzoo growth
+ epshermin = 0.2 ! Minimum efficiency of microzoo growth
ssigma = 0.5 ! Fraction excreted as semi-labile DOM
srespir = 0.2 ! Active respiration
@@ -304,9 +308,8 @@
ln_fechem = .false. ! complex iron chemistry ( T/F )
ln_ligvar = .false. ! variable ligand concentration
- ln_fecolloid = .false. ! variable colloidal fraction
xlam1 = 0.005 ! scavenging rate of Iron
xlamdust = 150.0 ! Scavenging rate of dust
ligand = 0.6E-9 ! Ligands concentration
- kfep = 0. ! Nanoparticle formation rate constant
+ kfep = 0.01 ! Nanoparticle formation rate constant
/
!-----------------------------------------------------------------------
@@ -383,4 +386,5 @@
fep_rats = 1. ! Fep/Fer ratio from sed sources
fep_rath = 1. ! Fep/Fer ratio from sed hydro sources
+ rdustfep = 0.0 ! Fraction of dust that is FeP
lgw_rath = 0.5 ! Weak ligand ratio from sed hydro sources
/
@@ -389,8 +393,8 @@
!-----------------------------------------------------------------------
rfep = 0.001 ! Dissolution rate of FeP
- rlgw = 1. ! Lifetime (years) of weak ligands
+ rlgw = 100. ! Lifetime (years) of weak ligands
rlig = 1.E-4 ! Remin ligand production per unit C
prlgw = 1.E-4 ! Photolysis of weak ligand
- rlgs = 1000. ! Lifetime (years) of strong ligands
+ rlgs = 1. ! Lifetime (years) of strong ligands
/
!-----------------------------------------------------------------------
Index: NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_ref
===================================================================
--- NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_ref (revision 10345)
+++ NEMO/branches/2018/dev_r10164_HPC09_ESIWACE_PREP_MERGE/cfgs/SHARED/namelist_ref (revision 10368)
@@ -972,4 +972,7 @@
&namzdf ! vertical physics manager (default: NO selection)
!-----------------------------------------------------------------------
+ ! ! adaptive-implicit vertical advection
+ ln_zad_Aimp = .false. ! Courant number dependent scheme (Shchepetkin 2015)
+ !
! ! type of vertical closure (required)
ln_zdfcst = .false. ! constant mixing
@@ -1292,5 +1295,5 @@
! ! buffer blocking send or immediate non-blocking sends, resp.
nn_buffer = 0 ! size in bytes of exported buffer ('B' case), 0 no exportation
- ln_nnogather = .false. ! activate code to avoid mpi_allgather use at the northfold
+ ln_nnogather = .true. ! activate code to avoid mpi_allgather use at the northfold
jpni = 0 ! jpni number of processors following i (set automatically if < 1)
jpnj = 0 ! jpnj number of processors following j (set automatically if < 1)