Index: /NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.bib
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.bib	(revision 11120)
+++ /NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.bib	(revision 11121)
@@ -1,4 +1,4 @@
 
-@Article{         adcroft.campin_04,
+@article{         adcroft.campin_04,
   author        = {A. Adcroft and J.-M. Campin},
   title         = {Rescaled height coordinates for accurate representation of
@@ -16,5 +16,5 @@
 }
 
-@Article{         arakawa.hsu_90,
+@article{         arakawa.hsu_90,
   author        = {A. Arakawa and Y.-J. G. Hsu},
   title         = {Energy Conserving and Potential-Enstrophy Dissipating
@@ -32,5 +32,5 @@
 }
 
-@Article{         arakawa.lamb_81,
+@article{         arakawa.lamb_81,
   author        = {A. Arakawa and V. R. Lamb},
   title         = {A Potential Enstrophy and Energy Conserving Scheme for the
@@ -48,5 +48,5 @@
 }
 
-@Article{         arakawa_66,
+@article{         arakawa_66,
   author        = {A. Arakawa},
   title         = {Computational design for long-term numerical integration
@@ -65,5 +65,5 @@
 }
 
-@Article{         arbic.garner.ea_04,
+@article{         arbic.garner.ea_04,
   author        = {B. K. Arbic and S. T. Garner and R. W. Hallberg and H. L.
                   Simmons},
@@ -82,5 +82,5 @@
 }
 
-@Article{         artale.iudicone.ea_02,
+@article{         artale.iudicone.ea_02,
   author        = {V. Artale and D. Iudicone and R. Santoleri and V. Rupolo
                   and S. Marullo and F. {D'O}rtenzio},
@@ -100,5 +100,20 @@
 }
 
-@Article{         axell_02,
+@Article{         asselin_72,
+  author        = "R. Asselin",
+  title         = "Frequency Filter for Time Integrations",
+  journal       = "Monthly Weather Review",
+  issn          = "1520-0493",
+  year          = "1972",
+  volume        = "100",
+  number        = "6",
+  month         = "jun",
+  pages         = "487--490",
+  publisher     = "American Meteorological Society",
+  doi           = "10.1175/1520-0493(1972)100<0487:fffti>2.3.co;2",
+  url           = "http://dx.doi.org/10.1175/1520-0493(1972)100<0487:fffti>2.3.co;2",
+}
+
+@article{         axell_02,
   author        = {L. B. Axell},
   title         = {Wind-driven internal waves and Langmuir circulations in a
@@ -114,10 +129,10 @@
 }
 
-@Article{         barnier.madec.ea_06,
+@article{         barnier.madec.ea_06,
   author        = {B. Barnier and G. Madec and T. Penduff and J.-M. Molines
-                  and A.-M. Tr\'{e}guier and J. Le Sommer and A. Beckmann and
-                  A. Biastoch and C. B\"{o}ning and J. Dengg and C. Derval
+                  and A.-M. Tr\'{e}guier and J. {Le Sommer} and A. Beckmann and
+                  A. Biastoch and C. B{\"{o}}ning and J. Dengg and C. Derval
                   and E. Durand and S. Gulev and E. Remy and C. Talandier and
-                  S. Theetten and M. Maltrud and J. McClean and B. De Cuevas},
+                  S. Theetten and M. Maltrud and J. McClean and B. {de Cuevas}},
   title         = {Impact of partial steps and momentum advection schemes in
                   a global ocean circulation model at eddy-permitting
@@ -135,6 +150,6 @@
 }
 
-@Article{         beckmann.doscher_97,
-  author        = {A. Beckmann and R. D\"{o}scher},
+@article{         beckmann.doscher_97,
+  author        = {A. Beckmann and R. D{\"{o}}scher},
   title         = {A method for improved representation of dense water
                   spreading over topography in geopotential-coordinate
@@ -152,5 +167,5 @@
 }
 
-@Article{         beckmann.goosse_03,
+@article{         beckmann.goosse_03,
   author        = {A. Beckmann and H. Goosse},
   title         = {A parameterization of ice shelf-ocean interaction for
@@ -168,5 +183,5 @@
 }
 
-@Article{         beckmann.haidvogel_93,
+@article{         beckmann.haidvogel_93,
   author        = {A. Beckmann and D. B. Haidvogel},
   title         = {Numerical Simulation of Flow around a Tall Isolated
@@ -185,5 +200,5 @@
 }
 
-@Article{         bernie.guilyardi.ea_07,
+@article{         bernie.guilyardi.ea_07,
   author        = {D. J. Bernie and E. Guilyardi and G. Madec and J. M.
                   Slingo and S. J. Woolnough},
@@ -203,5 +218,5 @@
 }
 
-@Article{         bernie.woolnough.ea_05,
+@article{         bernie.woolnough.ea_05,
   author        = {D. J. Bernie and S. J. Woolnough and J. M. Slingo and E.
                   Guilyardi},
@@ -220,5 +235,5 @@
 }
 
-@Article{         blanke.delecluse_93,
+@article{         blanke.delecluse_93,
   author        = {B. Blanke and P. Del\'{e}cluse},
   title         = {Variability of the tropical Atlantic Ocean simulated by a
@@ -237,5 +252,5 @@
 }
 
-@Article{         blanke.raynaud_97,
+@article{         blanke.raynaud_97,
   author        = {B. Blanke and S. Raynaud},
   title         = {Kinematics of the Pacific Equatorial Undercurrent: An
@@ -253,5 +268,5 @@
 }
 
-@Article{         bloom.takacs.ea_96,
+@article{         bloom.takacs.ea_96,
   author        = {S. C. Bloom and L. L. Takacs and A. M. Da Silva and D.
                   Ledvina},
@@ -269,5 +284,20 @@
 }
 
-@Article{         bougeault.lacarrere_89,
+@Article{         bouffard_boegman_13,
+  author        = "D. Bouffard and L. Boegman",
+  title         = "A diapycnal diffusivity model for stratified environmental
+                  flows",
+  journal       = "Dynamics of Atmospheres and Oceans",
+  issn          = "0377-0265",
+  year          = "2013",
+  volume        = "61-62",
+  month         = "jun",
+  pages         = "14--34",
+  publisher     = "Elsevier BV",
+  doi           = "10.1016/j.dynatmoce.2013.02.002",
+  url           = "http://dx.doi.org/10.1016/j.dynatmoce.2013.02.002",
+}
+
+@article{         bougeault.lacarrere_89,
   author        = {P. Bougeault and P. Lacarrere},
   title         = {Parameterization of Orography-Induced Turbulence in a
@@ -285,5 +315,5 @@
 }
 
-@Article{         bouillon.maqueda.ea_09,
+@article{         bouillon.maqueda.ea_09,
   author        = {S. Bouillon and M. A. Morales Maqueda and V. Legat and T.
                   Fichefet},
@@ -302,6 +332,6 @@
 }
 
-@Article{         boyer-montegut.madec.ea_04,
-  author        = {C. de Boyer Mont\'{e}gut and G. Madec and A. S. Fischer
+@article{         boyer-montegut.madec.ea_04,
+  author        = {C. {de Boyer Mont\'{e}gut} and G. Madec and A. S. Fischer
                   and A. Lazar and D. Iudicone},
   title         = {Mixed layer depth over the global ocean: An examination of
@@ -318,5 +348,5 @@
 }
 
-@Article{         brankart.candille.ea_15,
+@article{         brankart.candille.ea_15,
   author        = {J.-M. Brankart and G. Candille and F. Garnier and C.
                   Calone and A. Melet and P.-A. Bouttier and P. Brasseur and
@@ -336,5 +366,5 @@
 }
 
-@Article{         brankart_13,
+@article{         brankart_13,
   author        = {J.-M. Brankart},
   title         = {Impact of uncertainties in the horizontal density gradient
@@ -351,5 +381,5 @@
 }
 
-@Article{         breivik.bidlot.ea_16,
+@article{         breivik.bidlot.ea_16,
   author        = {{\O}. Breivik and J.-R. Bidlot and P. A. E. M. Janssen},
   title         = {A Stokes drift approximation based on the Phillips
@@ -366,5 +396,5 @@
 }
 
-@Article{         breivik.janssen.ea_14,
+@article{         breivik.janssen.ea_14,
   author        = {{\O}. Breivik and P. A. E. M. Janssen and J.-R. Bidlot},
   title         = {Approximate Stokes Drift Profiles in Deep Water},
@@ -381,5 +411,5 @@
 }
 
-@Article{         brodeau.barnier.ea_10,
+@article{         brodeau.barnier.ea_10,
   author        = {L. Brodeau and B. Barnier and A.-M. Tr\'{e}guier and T.
                   Penduff and S. Gulev},
@@ -398,5 +428,5 @@
 }
 
-@Article{         brown.campana_78,
+@article{         brown.campana_78,
   author        = {J. A. Brown and K. A. Campana},
   title         = {An economical time-differencing system for numerical
@@ -414,5 +444,5 @@
 }
 
-@Article{         bryan_97,
+@article{         bryan_97,
   author        = {K. Bryan},
   title         = {A numerical method for the study of the circulation of the
@@ -430,5 +460,5 @@
 }
 
-@Article{         burchard_02,
+@article{         burchard_02,
   author        = {H. Burchard},
   title         = {Energy-conserving discretisation of turbulent shear and
@@ -446,5 +476,5 @@
 }
 
-@Article{         campin.adcroft.ea_04,
+@article{         campin.adcroft.ea_04,
   author        = {J.-M. Campin and A. Adcroft and C. Hill and J. Marshall},
   title         = {Conservation of properties in a free-surface model},
@@ -461,5 +491,5 @@
 }
 
-@Article{         campin.goosse_99,
+@article{         campin.goosse_99,
   author        = {J.-M. Campin and H. Goosse},
   title         = {Parameterization of density-driven downsloping flow for a
@@ -477,8 +507,8 @@
 }
 
-@Article{         campin.marshall.ea_08,
+@article{         campin.marshall.ea_08,
   author        = {J.-M. Campin and J. Marshall and D. Ferreira},
   title         = {Sea ice-ocean coupling using a rescaled vertical
-                  coordinate z^{∗}},
+                  coordinate \zstar},
   journal       = {Ocean Modelling},
   publisher     = {Elsevier BV},
@@ -493,5 +523,5 @@
 }
 
-@Article{         canuto.howard.ea_01,
+@article{         canuto.howard.ea_01,
   author        = {V. M. Canuto and A. Howard and Y. Cheng and M. S.
                   Dubovikov},
@@ -510,5 +540,5 @@
 }
 
-@Article{         carrere.lyard_03,
+@article{         carrere.lyard_03,
   author        = {L. Carr\`{e}re and F. Lyard},
   title         = {Modeling the barotropic response of the global ocean to
@@ -526,5 +556,5 @@
 }
 
-@TechReport{      chanut_mersea05,
+@techreport{      chanut_mersea05,
   author        = {J. Chanut},
   title         = {Nesting code for {NEMO}},
@@ -538,5 +568,5 @@
 }
 
-@Article{         chassignet.smith.ea_03,
+@article{         chassignet.smith.ea_03,
   author        = {E. P. Chassignet and L. T. Smith and G. R. Halliwell and
                   R. Bleck},
@@ -556,5 +586,5 @@
 }
 
-@Article{         cox_87,
+@article{         cox_87,
   author        = {M. D. Cox},
   title         = {Isopycnal diffusion in a z-coordinate ocean model},
@@ -567,5 +597,5 @@
 }
 
-@Article{         craig.banner_94,
+@article{         craig.banner_94,
   author        = {P. D. Craig and M. L. Banner},
   title         = {Modeling wave-enhanced turbulence in the ocean surface
@@ -583,5 +613,5 @@
 }
 
-@Article{         craik.leibovich_76,
+@article{         craik.leibovich_76,
   author        = {A. D. D. Craik and S. Leibovich},
   title         = {A rational model for Langmuir circulations},
@@ -598,5 +628,5 @@
 }
 
-@Article{         dalessio.abdella.ea_98,
+@article{         dalessio.abdella.ea_98,
   author        = {S. J. D. D'Alessio and K. Abdella and N. A. McFarlane},
   title         = {A new second-order turbulence closure scheme for modeling
@@ -614,5 +644,5 @@
 }
 
-@Book{            daley.barker_01,
+@book{            daley.barker_01,
   author        = {R. Daley and E. Barker},
   booktitle     = {{NAVDAS} Source Book 2001: {NRL} Atmospheric Variational
@@ -627,5 +657,5 @@
 }
 
-@Article{         danabasoglu.ferrari.ea_08,
+@article{         danabasoglu.ferrari.ea_08,
   author        = {G. Danabasoglu and R. Ferrari and J. C. McWilliams},
   title         = {Sensitivity of an Ocean General Circulation Model to a
@@ -643,5 +673,5 @@
 }
 
-@Article{         davies_76,
+@article{         davies_76,
   author        = {H. C. Davies},
   title         = {A lateral boundary formulation for multi-level prediction
@@ -659,5 +689,5 @@
 }
 
-@Article{         debreu.vouland.ea_08,
+@article{         debreu.vouland.ea_08,
   author        = {L. Debreu and C. Vouland and E. Blayo},
   title         = {{AGRIF}: Adaptive Grid Refinement In Fortran},
@@ -674,5 +704,5 @@
 }
 
-@InCollection{    delecluse.madec_99,
+@incollection{    delecluse.madec_99,
   author        = {P. Del\'{e}cluse and G. Madec},
   title         = {Ocean modelling and the role of the ocean in the climate
@@ -688,5 +718,5 @@
 }
 
-@PhDThesis{       demange_14,
+@phdthesis{       demange_14,
   author        = {J. Demange},
   title         = {Advection and gravity waves propagation numerical schemes
@@ -698,5 +728,5 @@
 }
 
-@Article{         dobricic.pinardi.ea_07,
+@article{         dobricic.pinardi.ea_07,
   author        = {S. Dobricic and N. Pinardi and M. Adani and M. Tonani and
                   C. Fratianni and A. Bonazzi and V. Fernandez},
@@ -715,5 +745,5 @@
 }
 
-@Article{         drijfhout_94,
+@article{         drijfhout_94,
   author        = {S. S. Drijfhout},
   title         = {Heat transport by mesoscale eddies in an ocean circulation
@@ -731,5 +761,5 @@
 }
 
-@Article{         dukowicz.smith_94,
+@article{         dukowicz.smith_94,
   author        = {J. K. Dukowicz and R. D. Smith},
   title         = {Implicit free-surface method for the Bryan-Cox-Semtner
@@ -746,5 +776,5 @@
 }
 
-@Article{         egbert.ray_00,
+@article{         egbert.ray_00,
   author        = {G. D. Egbert and R. D. Ray},
   title         = {Significant dissipation of tidal energy in the deep ocean
@@ -762,5 +792,5 @@
 }
 
-@Article{         egbert.ray_01,
+@article{         egbert.ray_01,
   author        = {G. D. Egbert and R. D. Ray},
   title         = {Estimates of {M2} tidal energy dissipation from
@@ -778,5 +808,5 @@
 }
 
-@Article{         eiseman.stone_80,
+@article{         eiseman.stone_80,
   author        = {P. R. Eiseman and A. P. Stone},
   title         = {Conservation laws of fluid dynamics - {A} survey},
@@ -793,5 +823,5 @@
 }
 
-@Article{         emile-geay.madec_09,
+@article{         emile-geay.madec_09,
   author        = {J. Emile-Geay and G. Madec},
   title         = {Geothermal heating, diapycnal mixing and the abyssal
@@ -809,5 +839,5 @@
 }
 
-@Article{         engedahl_95,
+@article{         engedahl_95,
   author        = {H. Engedahl},
   title         = {Use of the flow relaxation scheme in a three-dimensional
@@ -825,6 +855,6 @@
 }
 
-@PhDThesis{       farge-coulombier_87,
-  author        = {M. Farge Coulombier},
+@phdthesis{       farge-coulombier_87,
+  author        = {M. {Farge Coulombier}},
   title         = {Dynamique non-lin\'{e}aire des ondes et des tourbillons
                   dans les \'{e}quations de Saint-Venant},
@@ -835,5 +865,5 @@
 }
 
-@Article{         farrow.stevens_95,
+@article{         farrow.stevens_95,
   author        = {D. E. Farrow and D. P. Stevens},
   title         = {A new tracer advection scheme for Bryan and Cox type Ocean
@@ -851,5 +881,5 @@
 }
 
-@Article{         flather_94,
+@article{         flather_94,
   author        = {R. A. Flather},
   title         = {A storm surge prediction model for the northern Bay of
@@ -868,5 +898,5 @@
 }
 
-@Book{            fofonoff.millard_83,
+@book{            fofonoff.millard_83,
   author        = {N P. Fofonoff and R. C. Millard},
   booktitle     = {Algorithms for computation of fundamental properties of
@@ -881,5 +911,5 @@
 }
 
-@Article{         galperin.kantha.ea_88,
+@article{         galperin.kantha.ea_88,
   author        = {B. Galperin and L. H. Kantha and S. Hassid and A. Rosati},
   title         = {A quasi-equilibrium turbulent energy model for geophysical
@@ -897,5 +927,5 @@
 }
 
-@Article{         gargett_84,
+@article{         gargett_84,
   author        = {A. E. Gargett},
   title         = {Vertical eddy diffusivity in the ocean interior},
@@ -912,5 +942,5 @@
 }
 
-@Article{         gaspar.gregoris.ea_90,
+@article{         gaspar.gregoris.ea_90,
   author        = {P. Gaspar and Y. Gr{\'e}goris and J.-M. Lefevre},
   title         = {A simple eddy kinetic energy model for simulations of the
@@ -928,5 +958,5 @@
 }
 
-@Article{         gent.mcwilliams_90,
+@article{         gent.mcwilliams_90,
   author        = {P. R. Gent and J. C. McWilliams},
   title         = {Isopycnal Mixing in Ocean Circulation Models},
@@ -943,5 +973,5 @@
 }
 
-@Article{         gentemann.minnett.ea_09,
+@article{         gentemann.minnett.ea_09,
   author        = {C. L. Gentemann and P. J. Minnett and B. Ward},
   title         = {Profiles of Ocean Surface Heating ({POSH}): {A} new model
@@ -959,6 +989,6 @@
 }
 
-@Article{         gerdes.koberle_91,
-  author        = {R. Gerdes and C. K\"{o}berle and J. Willebrand},
+@article{         gerdes.koberle_91,
+  author        = {R. Gerdes and C. K{\"{o}}berle and J. Willebrand},
   title         = {The influence of numerical advection schemes on the
                   results of Ocean General Circulation Models},
@@ -975,5 +1005,5 @@
 }
 
-@Article{         gerdes_93,
+@article{         gerdes_93,
   author        = {R. Gerdes},
   title         = {A primitive equation ocean circulation model using a
@@ -985,5 +1015,5 @@
   doi           = {10.1029/93jc00760},
   url           = {http://dx.doi.org/10.1029/93jc00760},
-  pages         = {14683},
+  pages         = {14683--14701},
   volume        = {98},
   number        = {C8},
@@ -991,5 +1021,5 @@
 }
 
-@Article{         gerdes_93*1,
+@article{         gerdes_93*1,
   author        = {R. Gerdes},
   title         = {A primitive equation ocean circulation model using a
@@ -1007,5 +1037,5 @@
 }
 
-@TechReport{      gibson_86,
+@techreport{      gibson_86,
   author        = {J. K. Gibson},
   title         = {Standards for software development and maintenance},
@@ -1020,5 +1050,5 @@
 }
 
-@Book{            gill_82,
+@book{            gill_82,
   author        = {A. E. Gill},
   booktitle     = {Atmosphere-Ocean Dynamics},
@@ -1035,5 +1065,21 @@
 }
 
-@Article{         goosse.deleersnijder.ea_99,
+@Article{         goff_10,
+  author        = "J. A. Goff",
+  title         = "Global prediction of abyssal hill root-mean-square heights
+                  from small-scale altimetric gravity variability",
+  journal       = "Journal of Geophysical Research",
+  issn          = "0148-0227",
+  year          = "2010",
+  volume        = "115",
+  number        = "B12",
+  month         = "dec",
+  pages         = "B12104",
+  publisher     = "American Geophysical Union (AGU)",
+  doi           = "10.1029/2010jb007867",
+  url           = "http://dx.doi.org/10.1029/2010JB007867",
+}
+
+@article{         goosse.deleersnijder.ea_99,
   author        = {H. Goosse and E. Deleersnijder and T. Fichefet and M. H.
                   England},
@@ -1052,5 +1098,5 @@
 }
 
-@Article{         graham.mcdougall_13,
+@article{         graham.mcdougall_13,
   author        = {F. S. Graham and T. J. McDougall},
   title         = {Quantifying the nonconservative production of conservative
@@ -1068,5 +1114,5 @@
 }
 
-@Article{         greatbatch_94,
+@article{         greatbatch_94,
   author        = {R. J. Greatbatch},
   title         = {A note on the representation of steric sea level in models
@@ -1083,6 +1129,6 @@
 }
 
-@Article{         griffies.biastoch.ea_09,
-  author        = {S. M. Griffies and A. Biastoch and C. B\"{o}ning and F.
+@article{         griffies.biastoch.ea_09,
+  author        = {S. M. Griffies and A. Biastoch and C. B{\"{o}}ning and F.
                   Bryan and G. Danabasoglu and E. P. Chassignet and M. H.
                   England and R. Gerdes and H. Haak and R. W. Hallberg and W.
@@ -1104,5 +1150,5 @@
 }
 
-@Article{         griffies.gnanadesikan.ea_98,
+@article{         griffies.gnanadesikan.ea_98,
   author        = {S. M. Griffies and A. Gnanadesikan and R. C. Pacanowski
                   and V. D. Larichev and J. K. Dukowicz and R. D. Smith},
@@ -1120,5 +1166,5 @@
 }
 
-@Article{         griffies.pacanowski.ea_01,
+@article{         griffies.pacanowski.ea_01,
   author        = {S. M. Griffies and R. C. Pacanowski and M. Schmidt and V.
                   Balaji},
@@ -1137,5 +1183,5 @@
 }
 
-@Book{            griffies_04,
+@book{            griffies_04,
   author        = {S. M. Griffies},
   booktitle     = {Fundamentals of ocean climate models},
@@ -1149,5 +1195,5 @@
 }
 
-@Article{         griffies_98,
+@article{         griffies_98,
   author        = {S. M. Griffies},
   title         = {The Gent-McWilliams skew-flux},
@@ -1164,5 +1210,5 @@
 }
 
-@Article{         guilyardi.madec.ea_01,
+@article{         guilyardi.madec.ea_01,
   author        = {E. Guilyardi and G. Madec and L. Terray},
   title         = {The role of lateral ocean physics in the upper ocean
@@ -1180,5 +1226,5 @@
 }
 
-@Article{         haney_91,
+@article{         haney_91,
   author        = {R. L. Haney},
   title         = {On the Pressure Gradient Force over Steep Topography in
@@ -1196,5 +1242,5 @@
 }
 
-@Article{         hazeleger.drijfhout_00,
+@article{         hazeleger.drijfhout_00,
   author        = {W. Hazeleger and S. S. Drijfhout},
   title         = {A model study on internally generated variability in
@@ -1212,5 +1258,5 @@
 }
 
-@Article{         hazeleger.drijfhout_00*1,
+@article{         hazeleger.drijfhout_00*1,
   author        = {W. Hazeleger and S. S. Drijfhout},
   title         = {Eddy subduction in a model of the subtropical gyre},
@@ -1227,5 +1273,5 @@
 }
 
-@Article{         hazeleger.drijfhout_98,
+@article{         hazeleger.drijfhout_98,
   author        = {W. Hazeleger and S. S. Drijfhout},
   title         = {Mode water variability in a model of the subtropical gyre:
@@ -1243,5 +1289,5 @@
 }
 
-@Article{         hazeleger.drijfhout_99,
+@article{         hazeleger.drijfhout_99,
   author        = {W. Hazeleger and S. S. Drijfhout},
   title         = {Stochastically forced mode water variability},
@@ -1258,5 +1304,5 @@
 }
 
-@Article{         he.ding_01,
+@article{         he.ding_01,
   author        = {Y. He and C. H. Q. Ding},
   title         = {Using accurate arithmetics to improve numerical
@@ -1273,5 +1319,5 @@
 }
 
-@Article{         hirt.amsden.ea_74,
+@article{         hirt.amsden.ea_74,
   author        = {C. W. Hirt and A. A. Amsden and J. L. Cook},
   title         = {An arbitrary Lagrangian-Eulerian computing method for all
@@ -1289,5 +1335,5 @@
 }
 
-@Article{         hofmeister.burchard.ea_10,
+@article{         hofmeister.burchard.ea_10,
   author        = {R. Hofmeister and H. Burchard and J.-M. Beckers},
   title         = {Non-uniform adaptive vertical grids for 3{D} numerical
@@ -1305,5 +1351,5 @@
 }
 
-@Article{         holland.jenkins_99,
+@article{         holland.jenkins_99,
   author        = {D. M. Holland and A. Jenkins},
   title         = {Modeling thermodynamic ice-ocean interactions at the
@@ -1321,5 +1367,5 @@
 }
 
-@TechReport{      hunter_06,
+@techreport{      hunter_06,
   author        = {J. R. Hunter},
   title         = {Specification for Test Models of Ice Shelf Cavities},
@@ -1333,5 +1379,5 @@
 }
 
-@Article{         jackson.rehmann_14,
+@article{         jackson.rehmann_14,
   author        = {P. R. Jackson and C. R. Rehmann},
   title         = {Experiments on differential scalar mixing in turbulence in
@@ -1349,5 +1395,5 @@
 }
 
-@TechReport{      janssen.breivik.ea_13,
+@techreport{      janssen.breivik.ea_13,
   author        = {P. A. E. M. Janssen and {\O}. Breivik and K. Mogensen and
                   F. Vitart and M. Alonso-Balmaseda and J.-R. Bidlot and S.
@@ -1364,5 +1410,5 @@
 }
 
-@Article{         jenkins.nicholls.ea_10,
+@article{         jenkins.nicholls.ea_10,
   author        = {A. Jenkins and K. W. Nicholls and H. F. J. Corr},
   title         = {Observation and parameterization of ablation at the base
@@ -1380,5 +1426,5 @@
 }
 
-@Article{         jenkins_91,
+@article{         jenkins_91,
   author        = {A. Jenkins},
   title         = {A one-dimensional model of ice shelf-ocean interaction},
@@ -1394,8 +1440,8 @@
 }
 
-@Article{         kantha.carniel_03,
+@article{         kantha.carniel_03,
   author        = {L. Kantha and S. Carniel},
-  title         = {Comments on {\"}{A} generic length-scale equation for
-                  geophysical turbulence models{\"} by {L}. Umlauf and {H}.
+  title         = {Comments on ``{A} generic length-scale equation for
+                  geophysical turbulence models'' by {L}. Umlauf and {H}.
                   Burchard},
   journal       = {Journal of Marine Research},
@@ -1411,5 +1457,5 @@
 }
 
-@Article{         kantha.clayson_94,
+@article{         kantha.clayson_94,
   author        = {L. H. Kantha and C. A. Clayson},
   title         = {An improved mixed layer model for geophysical
@@ -1426,5 +1472,5 @@
 }
 
-@Article{         kasahara_74,
+@article{         kasahara_74,
   author        = {A. Kasahara},
   title         = {Various vertical coordinate systems used for numerical
@@ -1442,5 +1488,5 @@
 }
 
-@Article{         killworth.stainforth.ea_91,
+@article{         killworth.stainforth.ea_91,
   author        = {P. D. Killworth and D. J. Webb and D. Stainforth and S. M.
                   Paterson},
@@ -1459,5 +1505,5 @@
 }
 
-@InProceedings{   killworth_89,
+@inproceedings{   killworth_89,
   author        = {P. D. Killworth},
   title         = {On the parameterization of deep convection in ocean
@@ -1472,5 +1518,5 @@
 }
 
-@Article{         killworth_92,
+@article{         killworth_92,
   author        = {P. D. Killworth},
   title         = {An equivalent-barotropic mode in the fine resolution
@@ -1488,5 +1534,5 @@
 }
 
-@Article{         koch-larrouy.lengaigne.ea_10,
+@article{         koch-larrouy.lengaigne.ea_10,
   author        = {A. Koch-Larrouy and M. Lengaigne and P. Terray and G.
                   Madec and S. Masson},
@@ -1505,5 +1551,5 @@
 }
 
-@Article{         koch-larrouy.madec.ea_07,
+@article{         koch-larrouy.madec.ea_07,
   author        = {A. Koch-Larrouy and G. Madec and P. Bouruet-Aubertot and
                   T. Gerkema and L. Bessi\`{e}res and R. Molcard},
@@ -1522,5 +1568,5 @@
 }
 
-@Article{         koch-larrouy.madec.ea_08,
+@article{         koch-larrouy.madec.ea_08,
   author        = {A. Koch-Larrouy and G. Madec and B. Blanke and R.
                   Molcard},
@@ -1539,5 +1585,5 @@
 }
 
-@Article{         koch-larrouy.madec.ea_08*1,
+@article{         koch-larrouy.madec.ea_08*1,
   author        = {A. Koch-Larrouy and G. Madec and D. Iudicone and A.
                   Atmadipoera and R. Molcard},
@@ -1556,5 +1602,5 @@
 }
 
-@Article{         kolmogorov_42,
+@article{         kolmogorov_42,
   author        = {A. N. Kolmogorov},
   title         = {Equations of turbulent motion in an incompressible fluid},
@@ -1566,5 +1612,5 @@
 }
 
-@TechReport{      large.yeager_04,
+@techreport{      large.yeager_04,
   author        = {W. G. Large and S. G. Yeager},
   title         = {Diurnal to decadal global forcing for ocean and sea-ice
@@ -1577,6 +1623,6 @@
 }
 
-@Article{         lavergne.madec.ea_16*1,
-  author        = {C. de Lavergne and G. Madec and J. Le Sommer and A. J. G.
+@article{         lavergne.madec.ea_16*1,
+  author        = {C. {de Lavergne} and G. Madec and J. {Le Sommer} and A. J. G.
                   Nurser and A. C. Naveira Garabato},
   title         = {The impact of a variable mixing efficiency on the abyssal
@@ -1594,5 +1640,5 @@
 }
 
-@Article{         lazar.madec.ea_99,
+@article{         lazar.madec.ea_99,
   author        = {A. Lazar and G. Madec and P. Del\'{e}cluse},
   title         = {The Deep Interior Downwelling, the Veronis Effect, and
@@ -1610,5 +1656,5 @@
 }
 
-@PhDThesis{       lazar_97,
+@phdthesis{       lazar_97,
   author        = {A. Lazar},
   title         = {La branche froide de la circulation thermohaline -
@@ -1621,5 +1667,5 @@
 }
 
-@Article{         le-sommer.penduff.ea_09,
+@article{         le-sommer.penduff.ea_09,
   author        = {J. {Le Sommer} and T. Penduff and S. Theetten and G. Madec
                   and B. Barnier},
@@ -1639,5 +1685,5 @@
 }
 
-@Article{         leclair.madec_09,
+@article{         leclair.madec_09,
   author        = {M. Leclair and G. Madec},
   title         = {A conservative leapfrog time stepping method},
@@ -1654,5 +1700,5 @@
 }
 
-@Article{         leclair.madec_11,
+@article{         leclair.madec_11,
   author        = {M. Leclair and G. Madec},
   title         = {$\tilde{z}$-coordinate, an arbitrary Lagrangian-Eulerian
@@ -1669,5 +1715,5 @@
 }
 
-@PhDThesis{       leclair_10,
+@phdthesis{       leclair_10,
   author        = {M. Leclair},
   title         = {Introduction d'une coordonn\'{e}e verticale arbitrairement
@@ -1679,5 +1725,5 @@
 }
 
-@Article{         lele_92,
+@article{         lele_92,
   author        = {S. K. Lele},
   title         = {Compact finite difference schemes with spectral-like
@@ -1695,5 +1741,5 @@
 }
 
-@Article{         lemarie.debreu.ea_12,
+@article{         lemarie.debreu.ea_12,
   author        = {F. Lemari\'{e} and L. Debreu and A. F. Shchepetkin and J.
                   C. McWilliams},
@@ -1711,5 +1757,5 @@
 }
 
-@Article{         lemarie.debreu.ea_15,
+@article{         lemarie.debreu.ea_15,
   author        = {F. Lemari\'{e} and L. Debreu and G. Madec and J. Demange
                   and J. M. Molines and M. Honnorat},
@@ -1728,5 +1774,5 @@
 }
 
-@Article{         lengaigne.madec.ea_03,
+@article{         lengaigne.madec.ea_03,
   author        = {M. Lengaigne and G. Madec and G. Alory and C. Menkes},
   title         = {Impact of isopycnal mixing on the tropical ocean
@@ -1743,5 +1789,5 @@
 }
 
-@Article{         lengaigne.menkes.ea_07,
+@article{         lengaigne.menkes.ea_07,
   author        = {M. Lengaigne and C. Menkes and O. Aumont and T. Gorgues
                   and L. Bopp and J.-M. Andr\'{e} and G. Madec},
@@ -1760,5 +1806,5 @@
 }
 
-@Article{         leonard_79,
+@article{         leonard_79,
   author        = {B. P. Leonard},
   title         = {A stable and accurate convective modelling procedure based
@@ -1776,5 +1822,5 @@
 }
 
-@Article{         leonard_91,
+@article{         leonard_91,
   author        = {B. P. Leonard},
   title         = {The {ULTIMATE} conservative difference scheme applied to
@@ -1792,5 +1838,5 @@
 }
 
-@Article{         lermusiaux_01,
+@article{         lermusiaux_01,
   author        = {P. F. J. Lermusiaux},
   title         = {Evolving the subspace of the three-dimensional multiscale
@@ -1808,5 +1854,5 @@
 }
 
-@TechReport{      levier.treguier.ea_mersea07,
+@techreport{      levier.treguier.ea_mersea07,
   author        = {B. Levier and A.-M. Tr\'{e}guier and G. Madec and V.
                   Garnier},
@@ -1821,5 +1867,5 @@
 }
 
-@Article{         levy.estublier.ea_01,
+@article{         levy.estublier.ea_01,
   author        = {M. L\'{e}vy and A. Estublier and G Madec},
   title         = {Choice of an advection scheme for biogeochemical models},
@@ -1836,5 +1882,5 @@
 }
 
-@Article{         levy.klein.ea_10,
+@article{         levy.klein.ea_10,
   author        = {M. L\'{e}vy and P. Klein and A.-M. Tr\'{e}guier and D.
                   Iovino and G. Madec and S. Masson and K. Takahashi},
@@ -1853,5 +1899,5 @@
 }
 
-@Article{         li.garrett_93,
+@article{         li.garrett_93,
   author        = {M. Li and C. Garrett},
   title         = {Cell merging and the jet/downwelling ratio in Langmuir
@@ -1869,5 +1915,5 @@
 }
 
-@Article{         losch_08,
+@article{         losch_08,
   author        = {M. Losch},
   title         = {Modeling ice shelf cavities in a z coordinate Ocean
@@ -1884,5 +1930,5 @@
 }
 
-@Article{         lott.madec.ea_90,
+@article{         lott.madec.ea_90,
   author        = {F. Lott and G. Madec and J. Verron},
   title         = {Topographic experiments in an Ocean General Circulation
@@ -1894,5 +1940,5 @@
 }
 
-@Article{         madec.chartier.ea_91,
+@article{         madec.chartier.ea_91,
   author        = {G. Madec and M. Chartier and M. Cr\'{e}pon},
   title         = {The effect of thermohaline forcing variability on deep
@@ -1911,5 +1957,5 @@
 }
 
-@InProceedings{   madec.crepon_91,
+@inproceedings{   madec.crepon_91,
   author        = {G. Madec and M. Cr\'{e}pon},
   booktitle     = "Deep convection and deep water formation in the oceans,
@@ -1931,5 +1977,5 @@
 }
 
-@Article{         madec.delecluse.ea_91,
+@article{         madec.delecluse.ea_91,
   author        = {G. Madec and P. Del\'{e}cluse and M. Cr\'{e}pon and M.
                   Chartier},
@@ -1948,5 +1994,5 @@
 }
 
-@Article{         madec.delecluse.ea_96,
+@article{         madec.delecluse.ea_96,
   author        = {G. Madec and P. Del\'{e}cluse and M. Cr\'{e}pon and F.
                   Lott},
@@ -1965,5 +2011,5 @@
 }
 
-@Manual{          madec.delecluse.ea_98,
+@book{            madec.delecluse.ea_98,
   author        = {G. Madec and P. Del\'{e}cluse and M. Imbard and C.
                   L\'{e}vy},
@@ -1979,5 +2025,5 @@
 }
 
-@Article{         madec.delecluse_97,
+@article{         madec.delecluse_97,
   author        = {G. Madec and P. Del\'{e}cluse},
   title         = {The {OPA}/{ARPEGE} and {OPA}/{LMD} Global Ocean-Atmosphere
@@ -1992,5 +2038,5 @@
 }
 
-@Article{         madec.imbard_96,
+@article{         madec.imbard_96,
   author        = {G. Madec and M. Imbard},
   title         = {A global ocean mesh to overcome the North Pole
@@ -2008,5 +2054,5 @@
 }
 
-@Article{         maltrud.smith.ea_98,
+@article{         maltrud.smith.ea_98,
   author        = {M. E. Maltrud and R. D. Smith and A. J. Semtner and R. C.
                   Malone},
@@ -2025,5 +2071,5 @@
 }
 
-@Article{         marchesiello.williams.ea_01,
+@article{         marchesiello.williams.ea_01,
   author        = {P. Marchesiello and J. C. McWilliams and A. Shchepetkin},
   title         = {Open boundary conditions for long-term integration of
@@ -2041,5 +2087,5 @@
 }
 
-@Article{         marsaleix.auclair.ea_08,
+@article{         marsaleix.auclair.ea_08,
   author        = {P. Marsaleix and F. Auclair and J. W. Floor and M. J.
                   Herrmann and C. Estournel and I. Pairaud and C. Ulses},
@@ -2058,8 +2104,8 @@
 }
 
-@Article{         marsh.ivchenko.ea_15,
+@article{         marsh.ivchenko.ea_15,
   author        = {R. Marsh and V. O. Ivchenko and N. Skliris and S. Alderson
                   and G. R. Bigg and G. Madec and A. T. Blaker and Y. Aksenov
-                  and B. Sinha and A. C. Coward and J. Le Sommer and N.
+                  and B. Sinha and A. C. Coward and J. {Le Sommer} and N.
                   Merino and V. B. Zalesny},
   title         = {{NEMO}-{ICB} (v1.0): interactive icebergs in the {NEMO}
@@ -2078,8 +2124,8 @@
 }
 
-@Article{         marti.madec.ea_92,
+@article{         marti.madec.ea_92,
   author        = {O. Marti and G. Madec and P. Del\'{e}cluse},
-  title         = {Comment on {\"}Net diffusivity in ocean general circulation
-                  models with nonuniform grids{\"} by {F}. {L}. Yin and {I}.
+  title         = {Comment on ``{N}et diffusivity in ocean general circulation
+                  models with nonuniform grids'' by {F}. {L}. Yin and {I}.
                   {Y}. Fung},
   journal       = {Journal of Geophysical Research},
@@ -2094,5 +2140,5 @@
 }
 
-@Article{         martin.adcroft_10,
+@article{         martin.adcroft_10,
   author        = {T. Martin and A. Adcroft},
   title         = {Parameterizing the fresh-water flux from land ice to ocean
@@ -2110,8 +2156,8 @@
 }
 
-@Article{         mathiot.jenkins.ea_17,
+@article{         mathiot.jenkins.ea_17,
   author        = {P. Mathiot and A. Jenkins and C. Harris and G. Madec},
   title         = {Explicit representation and parametrised impacts of under
-                  ice shelf seas in the z^\star coordinate ocean model {NEMO}
+                  ice shelf seas in the \zstar coordinate ocean model {NEMO}
                   3.6},
   journal       = {Geoscientific Model Development},
@@ -2127,5 +2173,5 @@
 }
 
-@Article{         mcdougall.taylor_84,
+@article{         mcdougall.taylor_84,
   author        = {T. J. McDougall and J. R. Taylor},
   title         = {Flux measurements across a finger interface at low values
@@ -2143,5 +2189,5 @@
 }
 
-@Article{         mcdougall_87,
+@article{         mcdougall_87,
   author        = {T. J. McDougall},
   title         = {Neutral Surfaces},
@@ -2158,5 +2204,5 @@
 }
 
-@Article{         mellor.blumberg_04,
+@article{         mellor.blumberg_04,
   author        = {G. Mellor and A. Blumberg},
   title         = {Wave Breaking and Ocean Surface Layer Thermal Response},
@@ -2173,5 +2219,5 @@
 }
 
-@Article{         mellor.yamada_82,
+@article{         mellor.yamada_82,
   author        = {G. L. Mellor and T. Yamada},
   title         = {Development of a turbulence closure model for geophysical
@@ -2188,5 +2234,5 @@
 }
 
-@Article{         merryfield.holloway.ea_99,
+@article{         merryfield.holloway.ea_99,
   author        = {W. J. Merryfield and G. Holloway and A. E. Gargett},
   title         = {A Global Ocean Model with Double-Diffusive Mixing},
@@ -2203,5 +2249,5 @@
 }
 
-@Book{            mesinger.arakawa_76,
+@book{            mesinger.arakawa_76,
   author        = {F. Mesinger and A. Arakawa},
   booktitle     = {Numerical methods used in atmospheric models},
@@ -2214,5 +2260,5 @@
 }
 
-@Article{         morel.berthon_89,
+@article{         morel.berthon_89,
   author        = {A. Morel and J.-F. Berthon},
   title         = {Surface pigments, algal biomass profiles, and potential
@@ -2231,5 +2277,5 @@
 }
 
-@Article{         morel.maritorena_01,
+@article{         morel.maritorena_01,
   author        = {A. Morel and S. Maritorena},
   title         = {Bio-optical properties of oceanic waters: {A}
@@ -2247,5 +2293,5 @@
 }
 
-@Article{         morel_88,
+@article{         morel_88,
   author        = {A. Morel},
   title         = {Optical modeling of the upper ocean in relation to its
@@ -2262,5 +2308,5 @@
 }
 
-@Article{         murray_96,
+@article{         murray_96,
   author        = {R. J. Murray},
   title         = {Explicit Generation of Orthogonal Grids for Ocean Models},
@@ -2277,5 +2323,5 @@
 }
 
-@Article{         oey_06,
+@article{         oey_06,
   author        = {L.-Y. Oey},
   title         = {An {OGCM} with movable land-sea boundaries},
@@ -2292,5 +2338,5 @@
 }
 
-@Article{         osborn_80,
+@article{         osborn_80,
   author        = {T. R. Osborn},
   title         = {Estimates of the local rate of vertical diffusion from
@@ -2308,5 +2354,5 @@
 }
 
-@Article{         pacanowski.gnanadesikan_98,
+@article{         pacanowski.gnanadesikan_98,
   author        = {R. C. Pacanowski and A. Gnanadesikan},
   title         = {Transient response in a z-level ocean model that resolves
@@ -2324,5 +2370,5 @@
 }
 
-@Article{         pacanowski.philander_81,
+@article{         pacanowski.philander_81,
   author        = {R. C. Pacanowski and S. G. H. Philander},
   title         = {Parameterization of Vertical Mixing in Numerical Models of
@@ -2340,5 +2386,5 @@
 }
 
-@Article{         paulson.simpson_77,
+@article{         paulson.simpson_77,
   author        = {C. A. Paulson and J. J. Simpson},
   title         = {Irradiance Measurements in the Upper Ocean},
@@ -2355,6 +2401,6 @@
 }
 
-@Article{         penduff.sommer.ea_07,
-  author        = {T. Penduff and J. Le Sommer and B. Barnier and A.-M.
+@article{         penduff.sommer.ea_07,
+  author        = {T. Penduff and J. {Le Sommer} and B. Barnier and A.-M.
                   Tr\'{e}guier and J.-M. Molines and G. Madec},
   title         = {Influence of numerical schemes on current-topography
@@ -2372,5 +2418,5 @@
 }
 
-@Article{         phillips_59,
+@article{         phillips_59,
   author        = {R. S. Phillips},
   title         = {Dissipative operators and hyperbolic systems of partial
@@ -2388,5 +2434,5 @@
 }
 
-@Article{         redi_82,
+@article{         redi_82,
   author        = {M. H. Redi},
   title         = {Oceanic isopycnal mixing by coordinate rotation},
@@ -2403,5 +2449,5 @@
 }
 
-@Book{            richtmyer.morton_67,
+@book{            richtmyer.morton_67,
   author        = {R. D. Richtmyer and K. W. Morton},
   booktitle     = {Difference methods for initial-value problems},
@@ -2416,5 +2462,5 @@
 }
 
-@Article{         robert_66,
+@article{         robert_66,
   author        = {A. J. Robert},
   title         = {The integration of a low order spectral form of the
@@ -2423,5 +2469,5 @@
   publisher     = {Meteorological Society of Japan},
   year          = {1966},
-  doi           = {10.2151/jmsj1965.44.5_237},
+  doi           = {10.2151/jmsj1965.44.5\_237},
   url           = {http://dx.doi.org/10.2151/jmsj1965.44.5_237},
   pages         = {237--245},
@@ -2431,7 +2477,7 @@
 }
 
-@Article{         rodgers.aumont.ea_14,
+@article{         rodgers.aumont.ea_14,
   author        = {K. B. Rodgers and O. Aumont and S. E. Mikaloff Fletcher
-                  and Y. Plancherel and L. Bopp and C. de Boyer Mont\'{e}gut
+                  and Y. Plancherel and L. Bopp and C. {de Boyer Mont\'{e}gut}
                   and D. Iudicone and R. F. Keeling and G. Madec and R.
                   Wanninkhof},
@@ -2450,5 +2496,5 @@
 }
 
-@Article{         rodi_87,
+@article{         rodi_87,
   author        = {W. Rodi},
   title         = {Examples of calculation methods for flow and mixing in
@@ -2465,5 +2511,5 @@
 }
 
-@Article{         roquet.madec.ea_15,
+@article{         roquet.madec.ea_15,
   author        = {F. Roquet and G. Madec and T. J. McDougall and P. M.
                   Barker},
@@ -2481,7 +2527,7 @@
 }
 
-@Article{         roquet.madec.ea_15*1,
+@article{         roquet.madec.ea_15*1,
   author        = {F. Roquet and G. Madec and L. Brodeau and J. Nycander},
-  title         = {Defining a simplified yet {\"}realistic{\"} equation of
+  title         = {Defining a simplified yet ``realistic'' equation of
                   state for seawater},
   journal       = {Journal of Physical Oceanography},
@@ -2497,5 +2543,5 @@
 }
 
-@Article{         roullet.madec_00,
+@article{         roullet.madec_00,
   author        = {G. Roullet and G. Madec},
   title         = {Salt conservation, free surface, and varying levels: {A}
@@ -2513,5 +2559,5 @@
 }
 
-@Article{         sarmiento.bryan_82,
+@article{         sarmiento.bryan_82,
   author        = {J. L. Sarmiento and K. Bryan},
   title         = {An ocean transport model for the North Atlantic},
@@ -2527,5 +2573,5 @@
 }
 
-@Article{         saunders_67,
+@article{         saunders_67,
   author        = {P. M. Saunders},
   title         = {The temperature at the ocean-air interface},
@@ -2542,5 +2588,5 @@
 }
 
-@Article{         shchepetkin.mcwilliams_05,
+@article{         shchepetkin.mcwilliams_05,
   author        = {A. F. Shchepetkin and J. C. McWilliams},
   title         = {The regional oceanic modeling system ({ROMS}): a
@@ -2559,5 +2605,5 @@
 }
 
-@InBook{          shchepetkin.mcwilliams_09,
+@inbook{          shchepetkin.mcwilliams_09,
   author        = {A. F. Shchepetkin and J. C. McWilliams},
   booktitle     = {Computational Methods for the Atmosphere and the Oceans},
@@ -2577,5 +2623,5 @@
 }
 
-@Article{         siddorn.furner_13,
+@article{         siddorn.furner_13,
   author        = {J. R. Siddorn and R. Furner},
   title         = {An analytical stretching function that combines the best
@@ -2593,5 +2639,5 @@
 }
 
-@Article{         simmons.jayne.ea_04,
+@article{         simmons.jayne.ea_04,
   author        = {H. L. Simmons and S. R. Jayne and L. C. {St Laurent} and
                   A. J. Weaver},
@@ -2610,5 +2656,5 @@
 }
 
-@Article{         song.haidvogel_94,
+@article{         song.haidvogel_94,
   author        = {Y. Song and D. Haidvogel},
   title         = {A semi-implicit ocean circulation model using a
@@ -2626,5 +2672,5 @@
 }
 
-@Article{         song_98,
+@article{         song_98,
   author        = {Y. T. Song},
   title         = {A General Pressure Gradient Formulation for Ocean Models.
@@ -2642,5 +2688,5 @@
 }
 
-@Article{         st-laurent.nash_04,
+@article{         st-laurent.nash_04,
   author        = {L. C. {St Laurent} and J. D. Nash},
   title         = {An examination of the radiative and dissipative properties
@@ -2658,5 +2704,5 @@
 }
 
-@Article{         st-laurent.simmons.ea_02,
+@article{         st-laurent.simmons.ea_02,
   author        = {L. C. {St Laurent} and H. L. Simmons and S. R. Jayne},
   title         = {Estimating tidally driven mixing in the deep ocean},
@@ -2673,5 +2719,5 @@
 }
 
-@Article{         stacey_99,
+@article{         stacey_99,
   author        = {M. W. Stacey},
   title         = {Simulations of the wind-forced near-surface circulation in
@@ -2690,5 +2736,5 @@
 }
 
-@Article{         steele.morley.ea_01,
+@article{         steele.morley.ea_01,
   author        = {M. Steele and R. Morley and W. Ermold},
   title         = {{PHC}: {A} global ocean hydrography with a high-quality
@@ -2706,5 +2752,5 @@
 }
 
-@Article{         stein.stein_92,
+@article{         stein.stein_92,
   author        = {C. A. Stein and S. Stein},
   title         = {A model for the global variation in oceanic depth and heat
@@ -2722,5 +2768,5 @@
 }
 
-@InBook{          stokes_09,
+@inbook{          stokes_09,
   author        = {G. G. Stokes},
   booktitle     = {Mathematical and Physical Papers},
@@ -2737,5 +2783,5 @@
 }
 
-@Article{         takaya.bidlot.ea_10,
+@article{         takaya.bidlot.ea_10,
   author        = {Y. Takaya and J-R. Bidlot and A. C. M. Beljaars and P. A.
                   E. M. Janssen},
@@ -2754,5 +2800,5 @@
 }
 
-@Article{         talagrand_72,
+@article{         talagrand_72,
   author        = {O. Talagrand},
   title         = {On the damping of high-frequency motions in
@@ -2770,5 +2816,5 @@
 }
 
-@Manual{          teos_10,
+@book{            teos_10,
   author        = {IOC, SCOR and IAPSO},
   title         = {The international thermodynamic equation of seawater -
@@ -2784,5 +2830,5 @@
 }
 
-@Article{         treguier.dukowicz.ea_96,
+@article{         treguier.dukowicz.ea_96,
   author        = {A.-M. Tr\'{e}guier and J. K. Dukowicz and K. Bryan},
   title         = {Properties of nonuniform grids used in ocean general
@@ -2800,5 +2846,5 @@
 }
 
-@Article{         treguier.held.ea_97,
+@article{         treguier.held.ea_97,
   author        = {A. M. Tr\'{e}guier and I. M. Held and V. D. Larichev},
   title         = {Parameterization of Quasigeostrophic Eddies in Primitive
@@ -2816,5 +2862,5 @@
 }
 
-@Article{         treguier_92,
+@article{         treguier_92,
   author        = {A. M. Tr\'{e}guier},
   title         = {Kinetic energy analysis of an eddy resolving, primitive
@@ -2831,5 +2877,5 @@
 }
 
-@Article{         tu.tsuang_05,
+@article{         tu.tsuang_05,
   author        = {C.-Y. Tu and B.-J. Tsuang},
   title         = {Cool-skin simulation by a one-column ocean model},
@@ -2846,5 +2892,5 @@
 }
 
-@Article{         umlauf.burchard_03,
+@article{         umlauf.burchard_03,
   author        = {L. Umlauf and H. Burchard},
   title         = {A generic length-scale equation for geophysical turbulence
@@ -2862,5 +2908,5 @@
 }
 
-@Article{         umlauf.burchard_05,
+@article{         umlauf.burchard_05,
   author        = {L. Umlauf and H. Burchard},
   title         = {Second-order turbulence closure models for geophysical
@@ -2878,5 +2924,5 @@
 }
 
-@Book{            vallis_06,
+@book{            vallis_06,
   author        = {G. K. Vallis},
   booktitle     = {Atmospheric and Oceanic Fluid Dynamics},
@@ -2888,5 +2934,5 @@
 }
 
-@Article{         vancoppenolle.fichefet.ea_09,
+@article{         vancoppenolle.fichefet.ea_09,
   author        = {M. Vancoppenolle and T. Fichefet and H. Goosse and S.
                   Bouillon and G. Madec and M. A. Morales Maqueda},
@@ -2905,5 +2951,5 @@
 }
 
-@Article{         vancoppenolle.fichefet.ea_09*1,
+@article{         vancoppenolle.fichefet.ea_09*1,
   author        = {M. Vancoppenolle and T. Fichefet and H. Goosse},
   title         = {Simulating the mass balance and salinity of Arctic and
@@ -2922,5 +2968,5 @@
 }
 
-@Article{         warner.defne.ea_13,
+@article{         warner.defne.ea_13,
   author        = {J. C. Warner and Z. Defne and K. Haas and H. G. Arango},
   title         = {A wetting and drying scheme for {ROMS}},
@@ -2936,5 +2982,5 @@
 }
 
-@Article{         warner.sherwood.ea_05,
+@article{         warner.sherwood.ea_05,
   author        = {J. C. Warner and C. R. Sherwood and H. G. Arango and R. P.
                   Signell},
@@ -2953,5 +2999,5 @@
 }
 
-@Article{         weatherly_84,
+@article{         weatherly_84,
   author        = {G. L. Weatherly},
   title         = {An estimate of bottom frictional dissipation by Gulf
@@ -2969,5 +3015,5 @@
 }
 
-@Article{         weaver.eby_97,
+@article{         weaver.eby_97,
   author        = {A. J. Weaver and M. Eby},
   title         = {On the numerical implementation of advection schemes for
@@ -2986,6 +3032,6 @@
 }
 
-@Article{         webb.cuevas.ea_98,
-  author        = {D. J. Webb and B. A. de Cuevas and C. S. Richmond},
+@article{         webb.cuevas.ea_98,
+  author        = {D. J. Webb and B. A. {de Cuevas} and C. S. Richmond},
   title         = {Improved Advection Schemes for Ocean Models},
   journal       = {Journal of Atmospheric and Oceanic Technology},
@@ -3001,5 +3047,5 @@
 }
 
-@Article{         white.adcroft.ea_09,
+@article{         white.adcroft.ea_09,
   author        = {L. White and A. Adcroft and R. Hallberg},
   title         = {High-order regridding-remapping schemes for continuous
@@ -3017,5 +3063,5 @@
 }
 
-@Article{         wilcox_88,
+@article{         wilcox_88,
   author        = {D. C. Wilcox},
   title         = {Reassessment of the scale-determining equation for
@@ -3034,6 +3080,6 @@
 }
 
-@Article{         willebrand.barnier.ea_01,
-  author        = {J. Willebrand and B. Barnier and C. B\"{o}ning and C.
+@article{         willebrand.barnier.ea_01,
+  author        = {J. Willebrand and B. Barnier and C. B{\"{o}}ning and C.
                   Dieterich and P. D. Killworth and C. Le Provost and Y. Jia
                   and J.-M. Molines and A. L. New},
@@ -3052,5 +3098,5 @@
 }
 
-@Article{         zalesak_79,
+@article{         zalesak_79,
   author        = {S. T. Zalesak},
   title         = {Fully multidimensional flux-corrected transport algorithms
@@ -3068,5 +3114,5 @@
 }
 
-@Article{         zhang.endoh_92,
+@article{         zhang.endoh_92,
   author        = {R.-H. Zhang and M. Endoh},
   title         = {A free surface General Circulation Model for the tropical
