Index: /NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/main/NEMO_manual.tex	(revision 11151)
@@ -8,11 +8,11 @@
 
 %% Document layout
-\documentclass{book}
+\documentclass[draft]{scrreport}
 
 %% Custom style (.sty)
-\usepackage{../../styles/NEMO}
+\usepackage{../../global/packages}
 \hypersetup{
   pdftitle={NEMO ocean engine},
-  pdfauthor={Gurvan Madec, and NEMO System Team},
+  pdfauthor={Gurvan Madec and NEMO System Team},
   colorlinks
 }
@@ -26,4 +26,5 @@
 %% End of common preamble between main and sub-files
 \begin{document}
+\pagenumbering{gobble}
 
 %% Override custom cmds for full manual compilation
@@ -35,72 +36,74 @@
 %% ==============================================================================
 
-\graphicspath{{../../figures/logos/}}
-
-%% Frontpage
-\title{
-  \includegraphics[height=0.05\textheight]{CMCC}\hfill
-  \includegraphics[height=0.05\textheight]{CNRS}\hfill
-  \includegraphics[height=0.05\textheight]{MOI} \hfill
-  \includegraphics[height=0.05\textheight]{UKMO}\hfill
-  \includegraphics[height=0.05\textheight]{NERC}       \\
-  \includegraphics[ width=0.8\textwidth  ]{NEMO_grey}  \\
-  {\Huge NEMO ocean engine}                                     \\
-}
-\author{
-  \Large Gurvan Madec and NEMO System Team
-%  \thanks{
-%
-%  }                                                        \\
-  \textit{Issue 27, Notes du P\^{o}le de mod\'{e}lisation} \\
-  \textit{Institut Pierre-Simon Laplace (IPSL)}            \\
-  \textit{ISSN 1288-1619}
+\title{NEMO ocean engine}
+\author{Gurvan Madec \and NEMO System Team\thanks{
+    TBD
+  }
 }
 \date{\today}
 
-\maketitle
-\frontmatter
+%% Title and information pages
+\input{../../global/frontpages}
+
+%% Citation embedded
+\textsf{
+``{\bfseries NEMO ocean engine}'', 
+Madec Gurvan and NEMO System Team, 
+{\em Scientific Notes of Climate Modelling Center (27)}, ISSN 1288-1619, 
+Institut Pierre-Simon Laplace (IPSL), 
+}
+
+\newpage
+%\frontmatter   %% Chapter numbering off and Roman numerals for page numbers
+\pagenumbering{roman}
+
+\subfile{../subfiles/foreword}            %% Foreword
+
 
 %% ToC i.e. Table of Contents
+\newpage
 \dominitoc
 \tableofcontents
 
+\clearpage
+%\end{document}
 
 %% Mainmatter
 %% ==============================================================================
 
-\mainmatter
+%\mainmatter   %% Chapter numbering on, page numbering is reset with Arabic numerals
+\pagenumbering{arabic}
 
 \graphicspath{{../../figures/NEMO/}}
 
-%% Foreword
-\subfile{../subfiles/foreword}
-
-%% Introduction
-\subfile{../subfiles/introduction}
+\subfile{../subfiles/introduction}        %% Introduction
 
 %% Chapters
 \subfile{../subfiles/chap_model_basics}
-\subfile{../subfiles/chap_time_domain}    % Time discretisation (time stepping strategy)
-\subfile{../subfiles/chap_DOM}            % Space discretisation
-\subfile{../subfiles/chap_TRA}            % Tracer advection/diffusion equation
-\subfile{../subfiles/chap_DYN}            % Dynamics : momentum equation
-\subfile{../subfiles/chap_SBC}            % Surface Boundary Conditions
-\subfile{../subfiles/chap_LBC}            % Lateral Boundary Conditions
-\subfile{../subfiles/chap_LDF}            % Lateral diffusion
-\subfile{../subfiles/chap_ZDF}            % Vertical diffusion
-\subfile{../subfiles/chap_DIA}            % Outputs and Diagnostics
-\subfile{../subfiles/chap_OBS}            % Observation operator
-\subfile{../subfiles/chap_ASM}            % Assimilation increments
-\subfile{../subfiles/chap_STO}            % Stochastic param.
-\subfile{../subfiles/chap_misc}           % Miscellaneous topics
-\subfile{../subfiles/chap_CONFIG}         % Predefined configurations
+\subfile{../subfiles/chap_time_domain}    %% Time discretisation (time stepping strategy)
+\subfile{../subfiles/chap_DOM}            %% Space discretisation
+\subfile{../subfiles/chap_TRA}            %% Tracer advection/diffusion equation
+\subfile{../subfiles/chap_DYN}            %% Dynamics : momentum equation
+\subfile{../subfiles/chap_SBC}            %% Surface Boundary Conditions
+\subfile{../subfiles/chap_LBC}            %% Lateral Boundary Conditions
+\subfile{../subfiles/chap_LDF}            %% Lateral diffusion
+\subfile{../subfiles/chap_ZDF}            %% Vertical diffusion
+\subfile{../subfiles/chap_DIA}            %% Outputs and Diagnostics
+\subfile{../subfiles/chap_OBS}            %% Observation operator
+\subfile{../subfiles/chap_ASM}            %% Assimilation increments
+\subfile{../subfiles/chap_STO}            %% Stochastic param.
+\subfile{../subfiles/chap_misc}           %% Miscellaneous topics
+\subfile{../subfiles/chap_CONFIG}         %% Predefined configurations
 
 %% Appendix
-\appendix
-\subfile{../subfiles/annex_A}             % Generalised vertical coordinate
-\subfile{../subfiles/annex_B}             % Diffusive operator
-\subfile{../subfiles/annex_C}             % Discrete invariants of the eqs.
-\subfile{../subfiles/annex_iso}	          % Isoneutral diffusion using triads
-\subfile{../subfiles/annex_D}             % Coding rules
+%% ==============================================================================
+
+\appendix   % Chapter numbering is reset with letters now
+
+\subfile{../subfiles/annex_A}             %% Generalised vertical coordinate
+\subfile{../subfiles/annex_B}             %% Diffusive operator
+\subfile{../subfiles/annex_C}             %% Discrete invariants of the eqs.
+\subfile{../subfiles/annex_iso}	          %% Isoneutral diffusion using triads
+\subfile{../subfiles/annex_D}             %% Coding rules
 
 %% Not included
@@ -108,13 +111,12 @@
 %\subfile{../subfiles/chap_DIU}
 %\subfile{../subfiles/chap_conservation}
-%\subfile{../subfiles/annex_E}				% Notes on some on going staff
+%\subfile{../subfiles/annex_E}				%% Notes on some on going staff
 
 %% Backmatter
 %% ==============================================================================
 
-\backmatter
+%\backmatter   %% Chapter numbering off
 
 %% Bibliography
-\cleardoublepage
 \phantomsection
 \addcontentsline{toc}{chapter}{Bibliography}
@@ -122,5 +124,5 @@
 
 %% Index
-\cleardoublepage
+\clearpage
 \phantomsection
 \addcontentsline{toc}{chapter}{Index}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/annex_A.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/annex_A.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/annex_A.tex	(revision 11151)
@@ -79,5 +79,5 @@
     {
     \begin{array}{*{20}l}
-      \nabla \cdot {\rm {\bf U}}
+      \nabla \cdot {\mathrm {\mathbf U}}
       &= \frac{1}{e_1 \,e_2 }  \left[ \left. {\frac{\partial (e_2 \,u)}{\partial i}} \right|_z
         +\left. {\frac{\partial(e_1 \,v)}{\partial j}} \right|_z  \right]
@@ -115,5 +115,5 @@
       $, it becomes:}
     %
-      \nabla \cdot {\rm {\bf U}}
+      \nabla \cdot {\mathrm {\mathbf U}}
       & = \frac{1}{e_1 \,e_2 \,e_3 }  \left[
 		  \left.  \frac{\partial (e_2 \,e_3 \,u)}{\partial i} \right|_s
@@ -144,5 +144,5 @@
     {
     \begin{array}{*{20}l}
-      \nabla \cdot {\rm {\bf U}}
+      \nabla \cdot {\mathrm {\mathbf U}}
       &= \frac{1}{e_1 \,e_2 \,e_3 }    \left[
 		  \left.  \frac{\partial (e_2 \,e_3 \,u)}{\partial i} \right|_s
@@ -346,5 +346,5 @@
   %
     &= \left. {\frac{\partial u }{\partial t}} \right|_s
-    &+ \left.  \nabla \cdot \left(   {{\rm {\bf U}}\,u}   \right)    \right|_s
+    &+ \left.  \nabla \cdot \left(   {{\mathrm {\mathbf U}}\,u}   \right)    \right|_s
       + \,u \frac{1}{e_3 } \frac{\partial e_3}{\partial t}
       - \frac{v}{e_1 e_2 }\left(    v  \;\frac{\partial e_2 }{\partial i}
@@ -359,5 +359,5 @@
   \label{apdx:A_sco_Dt_flux}
   \left. \frac{D u}{D t} \right|_s   = \frac{1}{e_3}  \left. \frac{\partial ( e_3\,u)}{\partial t} \right|_s
-  + \left.  \nabla \cdot \left(   {{\rm {\bf U}}\,u}   \right)    \right|_s
+  + \left.  \nabla \cdot \left(   {{\mathrm {\mathbf U}}\,u}   \right)    \right|_s
   - \frac{v}{e_1 e_2 }\left(    v  \;\frac{\partial e_2 }{\partial i}
     -u  \;\frac{\partial e_1 }{\partial j}            \right)
@@ -483,5 +483,5 @@
     \label{apdx:A_PE_dyn_flux_u}
     \frac{1}{e_3} \frac{\partial \left(  e_3\,u  \right) }{\partial t} =
-    \nabla \cdot \left(   {{\rm {\bf U}}\,u}   \right)
+    \nabla \cdot \left(   {{\mathrm {\mathbf U}}\,u}   \right)
     +   \left\{ {f + \frac{1}{e_1 e_2 }\left(    v  \;\frac{\partial e_2 }{\partial i}
           -u  \;\frac{\partial e_1 }{\partial j}            \right)} \right\} \,v     \\
@@ -493,5 +493,5 @@
     \label{apdx:A_dyn_flux_v}
     \frac{1}{e_3}\frac{\partial \left(  e_3\,v  \right) }{\partial t}=
-    -  \nabla \cdot \left(   {{\rm {\bf U}}\,v}   \right)
+    -  \nabla \cdot \left(   {{\mathrm {\mathbf U}}\,v}   \right)
     +   \left\{ {f + \frac{1}{e_1 e_2 }\left(    v  \;\frac{\partial e_2 }{\partial i}
           -u  \;\frac{\partial e_1 }{\partial j}            \right)} \right\} \,u     \\
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/annex_B.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/annex_B.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/annex_B.tex	(revision 11151)
@@ -236,5 +236,5 @@
   {
   \begin{array}{*{20}l}
-    \nabla T\;.\left( {{\rm {\bf A}}_{\rm {\bf I}} \nabla T}
+    \nabla T\;.\left( {{\mathrm {\mathbf A}}_{\mathrm {\mathbf I}} \nabla T}
     \right)&=A^{lT}\left[ {\left( {\frac{\partial T}{\partial i}} \right)^2-2a_1
              \frac{\partial T}{\partial i}\frac{\partial T}{\partial k}+\left(
@@ -379,5 +379,5 @@
   - \nabla _h \times \left( {A^{lm}\;\zeta \;{\textbf{k}}} \right)
   + \frac{1}{e_3 }\frac{\partial }{\partial k}\left( {\frac{A^{vm}\;}{e_3 }
-      \frac{\partial {\rm {\bf U}}_h }{\partial k}} \right) \\
+      \frac{\partial {\mathrm {\mathbf U}}_h }{\partial k}} \right) \\
 \end{equation}
 that is, in expanded form:
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/annex_E.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/annex_E.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/annex_E.tex	(revision 11151)
@@ -308,5 +308,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.70\textwidth]{Fig_ISO_triad}
+    \includegraphics[width=\textwidth]{Fig_ISO_triad}
     \caption{
       \protect\label{fig:ISO_triad}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/annex_iso.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/annex_iso.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/annex_iso.tex	(revision 11151)
@@ -201,5 +201,5 @@
 \begin{figure}[tb]
   \begin{center}
-    \includegraphics[width=1.05\textwidth]{Fig_GRIFF_triad_fluxes}
+    \includegraphics[width=\textwidth]{Fig_GRIFF_triad_fluxes}
     \caption{
       \protect\label{fig:ISO_triad}
@@ -265,5 +265,5 @@
 \begin{figure}[tb]
   \begin{center}
-    \includegraphics[width=0.80\textwidth]{Fig_GRIFF_qcells}
+    \includegraphics[width=\textwidth]{Fig_GRIFF_qcells}
     \caption{
       \protect\label{fig:qcells}
@@ -658,5 +658,5 @@
 \begin{figure}[h]
   \begin{center}
-    \includegraphics[width=0.60\textwidth]{Fig_GRIFF_bdry_triads}
+    \includegraphics[width=\textwidth]{Fig_GRIFF_bdry_triads}
     \caption{
       \protect\label{fig:bdry_triads}
@@ -732,5 +732,5 @@
 \[
   % \label{eq:iso_tensor_ML}
-  D^{lT}=\nabla {\rm {\bf .}}\left( {A^{lT}\;\Re \;\nabla T} \right) \qquad
+  D^{lT}=\nabla {\mathrm {\mathbf .}}\left( {A^{lT}\;\Re \;\nabla T} \right) \qquad
   \mbox{with}\quad \;\;\Re =\left( {{
         \begin{array}{*{20}c}
@@ -829,5 +829,5 @@
     (\eg the green triad $i_p=1/2,k_p=-1/2$) are tapered to the appropriate basal triad.}
   % }
-  \includegraphics[width=0.60\textwidth]{Fig_GRIFF_MLB_triads}
+  \includegraphics[width=\textwidth]{Fig_GRIFF_MLB_triads}
 \end{figure}
 % >>>>>>>>>>>>>>>>>>>>>>>>>>>>
@@ -847,5 +847,5 @@
 \[
   % \label{eq:iso_tensor_ML2}
-  D^{lT}=\nabla {\rm {\bf .}}\left( {A^{lT}\;\Re \;\nabla T} \right) \qquad
+  D^{lT}=\nabla {\mathrm {\mathbf .}}\left( {A^{lT}\;\Re \;\nabla T} \right) \qquad
   \mbox{with}\quad \;\;\Re =\left( {{
         \begin{array}{*{20}c}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_ASM.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_ASM.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_ASM.tex	(revision 11151)
@@ -41,14 +41,14 @@
 IAU is used when \np{ln\_asmiau} is set to true.
 
-With IAU, the model state trajectory ${\bf x}$ in the assimilation window ($t_{0} \leq t_{i} \leq t_{N}$)
+With IAU, the model state trajectory ${\mathbf x}$ in the assimilation window ($t_{0} \leq t_{i} \leq t_{N}$)
 is corrected by adding the analysis increments for temperature, salinity, horizontal velocity and SSH as
 additional tendency terms to the prognostic equations:
 \begin{align*}
   % \label{eq:wa_traj_iau}
-  {\bf x}^{a}(t_{i}) = M(t_{i}, t_{0})[{\bf x}^{b}(t_{0})] \; + \; F_{i} \delta \tilde{\bf x}^{a}
+  {\mathbf x}^{a}(t_{i}) = M(t_{i}, t_{0})[{\mathbf x}^{b}(t_{0})] \; + \; F_{i} \delta \tilde{\mathbf x}^{a}
 \end{align*}
-where $F_{i}$ is a weighting function for applying the increments $\delta\tilde{\bf x}^{a}$ defined such that
+where $F_{i}$ is a weighting function for applying the increments $\delta\tilde{\mathbf x}^{a}$ defined such that
 $\sum_{i=1}^{N} F_{i}=1$.
-${\bf x}^b$ denotes the model initial state and ${\bf x}^a$ is the model state after the increments are applied.
+${\mathbf x}^b$ denotes the model initial state and ${\mathbf x}^a$ is the model state after the increments are applied.
 To control the adjustment time of the model to the increment,
 the increment can be applied over an arbitrary sub-window, $t_{m} \leq t_{i} \leq t_{n}$,
@@ -62,7 +62,7 @@
   =\left\{
   \begin{array}{ll}
-    0     &    {\rm if} \; \; \; t_{i} < t_{m}                \\
-    1/M &    {\rm if} \; \; \; t_{m} < t_{i} \leq t_{n} \\
-    0     &    {\rm if} \; \; \; t_{i} > t_{n}
+    0     &    {\mathrm if} \; \; \; t_{i} < t_{m}                \\
+    1/M &    {\mathrm if} \; \; \; t_{m} < t_{i} \leq t_{n} \\
+    0     &    {\mathrm if} \; \; \; t_{i} > t_{n}
   \end{array}
             \right. 
@@ -76,8 +76,8 @@
   =\left\{
   \begin{array}{ll}
-    0                           &    {\rm if} \; \; \; t_{i}       <     t_{m}                        \\
-    \alpha \, i               &    {\rm if} \; \; \; t_{m}    \leq t_{i}    \leq   t_{M/2}   \\
-    \alpha \, (M - i +1) &    {\rm if} \; \; \; t_{M/2}  <    t_{i}    \leq   t_{n}       \\
-    0                            &   {\rm if} \; \; \; t_{i}        >    t_{n}
+    0                           &    {\mathrm if} \; \; \; t_{i}       <     t_{m}                        \\
+    \alpha \, i               &    {\mathrm if} \; \; \; t_{m}    \leq t_{i}    \leq   t_{M/2}   \\
+    \alpha \, (M - i +1) &    {\mathrm if} \; \; \; t_{M/2}  <    t_{i}    \leq   t_{n}       \\
+    0                            &   {\mathrm if} \; \; \; t_{i}        >    t_{n}
   \end{array}
                                    \right.
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_CONFIG.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_CONFIG.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_CONFIG.tex	(revision 11151)
@@ -89,5 +89,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.98\textwidth]{Fig_ORCA_NH_mesh}
+    \includegraphics[width=\textwidth]{Fig_ORCA_NH_mesh}
     \caption{
       \protect\label{fig:MISC_ORCA_msh}
@@ -121,6 +121,6 @@
 \begin{figure}[!tbp]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_ORCA_NH_msh05_e1_e2}
-    \includegraphics[width=0.80\textwidth]{Fig_ORCA_aniso}
+    \includegraphics[width=\textwidth]{Fig_ORCA_NH_msh05_e1_e2}
+    \includegraphics[width=\textwidth]{Fig_ORCA_aniso}
     \caption {
       \protect\label{fig:MISC_ORCA_e1e2}
@@ -280,5 +280,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_GYRE}
+    \includegraphics[width=\textwidth]{Fig_GYRE}
     \caption{
       \protect\label{fig:GYRE}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIA.tex	(revision 11151)
@@ -168,7 +168,7 @@
 \xmlline|<variable id="using_server" type="bool"></variable>|
 
-The {\tt using\_server} setting determines whether or not the server will be used in \textit{attached mode}
-(as a library) [{\tt> false <}] or in \textit{detached mode}
-(as an external executable on N additional, dedicated cpus) [{\tt > true <}].
+The {\ttfamily using\_server} setting determines whether or not the server will be used in \textit{attached mode}
+(as a library) [{\ttfamily> false <}] or in \textit{detached mode}
+(as an external executable on N additional, dedicated cpus) [{\ttfamily > true <}].
 The \textit{attached mode} is simpler to use but much less efficient for massively parallel applications.
 The type of each file can be either ''multiple\_file'' or ''one\_file''.
@@ -207,5 +207,5 @@
 \subsubsection{Control of XIOS: the context in iodef.xml}
 
-As well as the {\tt using\_server} flag, other controls on the use of XIOS are set in the XIOS context in iodef.xml.
+As well as the {\ttfamily using\_server} flag, other controls on the use of XIOS are set in the XIOS context in iodef.xml.
 See the XML basics section below for more details on XML syntax and rules.
 
@@ -938,5 +938,5 @@
     \hline
   \end{tabularx}
-  \caption{Field tags ("\tt{field\_*}")}
+  \caption{Field tags ("\ttfamily{field\_*}")}
 \end{table}
 
@@ -974,5 +974,5 @@
     \hline
   \end{tabularx}
-  \caption{File tags ("\tt{file\_*}")}
+  \caption{File tags ("\ttfamily{file\_*}")}
 \end{table}
 
@@ -1007,5 +1007,5 @@
     \hline
   \end{tabularx}
-  \caption{Axis tags ("\tt{axis\_*}")}
+  \caption{Axis tags ("\ttfamily{axis\_*}")}
 \end{table}
 
@@ -1040,5 +1040,5 @@
     \hline
   \end{tabularx}
-  \caption{Domain tags ("\tt{domain\_*)}"}
+  \caption{Domain tags ("\ttfamily{domain\_*)}"}
 \end{table}
 
@@ -1073,5 +1073,5 @@
     \hline
   \end{tabularx}
-  \caption{Grid tags ("\tt{grid\_*}")}
+  \caption{Grid tags ("\ttfamily{grid\_*}")}
 \end{table}
 
@@ -1114,5 +1114,5 @@
     \hline
   \end{tabularx}
-  \caption{Reference attributes ("\tt{*\_ref}")}
+  \caption{Reference attributes ("\ttfamily{*\_ref}")}
 \end{table}
 
@@ -1150,5 +1150,5 @@
     \hline
   \end{tabularx}
-  \caption{Domain attributes ("\tt{zoom\_*}")}
+  \caption{Domain attributes ("\ttfamily{zoom\_*}")}
 \end{table}
 
@@ -1389,6 +1389,6 @@
 \end{forlines}
 
-\noindent for a standard ORCA2\_LIM configuration gives chunksizes of {\small\tt 46x38x1} respectively in
-the mono-processor case (\ie global domain of {\small\tt 182x149x31}).
+\noindent for a standard ORCA2\_LIM configuration gives chunksizes of {\small\ttfamily 46x38x1} respectively in
+the mono-processor case (\ie global domain of {\small\ttfamily 182x149x31}).
 An illustration of the potential space savings that NetCDF4 chunking and compression provides is given in 
 table \autoref{tab:NC4} which compares the results of two short runs of the ORCA2\_LIM reference configuration with
@@ -2016,5 +2016,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_mask_subasins}
+    \includegraphics[width=\textwidth]{Fig_mask_subasins}
     \caption{
       \protect\label{fig:mask_subasins}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIU.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIU.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DIU.tex	(revision 11151)
@@ -33,5 +33,5 @@
 (\ie from the temperature of the top few model levels) or from some other source.  
 It must be noted that both the cool skin and warm layer models produce estimates of the change in temperature
-($\Delta T_{\rm{cs}}$ and $\Delta T_{\rm{wl}}$) and
+($\Delta T_{\mathrm{cs}}$ and $\Delta T_{\mathrm{wl}}$) and
 both must be added to a foundation SST to obtain the true skin temperature.
 
@@ -63,15 +63,15 @@
 This is a simple flux based model that is defined by the equations
 \begin{align}
-\frac{\partial{\Delta T_{\rm{wl}}}}{\partial{t}}&=&\frac{Q(\nu+1)}{D_T\rho_w c_p
+\frac{\partial{\Delta T_{\mathrm{wl}}}}{\partial{t}}&=&\frac{Q(\nu+1)}{D_T\rho_w c_p
 \nu}-\frac{(\nu+1)ku^*_{w}f(L_a)\Delta T}{D_T\Phi\!\left(\frac{D_T}{L}\right)} \mbox{,}
 \label{eq:ecmwf1} \\
 L&=&\frac{\rho_w c_p u^{*^3}_{w}}{\kappa g \alpha_w Q }\mbox{,}\label{eq:ecmwf2}
 \end{align}
-where $\Delta T_{\rm{wl}}$ is the temperature difference between the top of the warm layer and the depth $D_T=3$\,m at which there is assumed to be no diurnal signal.
+where $\Delta T_{\mathrm{wl}}$ is the temperature difference between the top of the warm layer and the depth $D_T=3$\,m at which there is assumed to be no diurnal signal.
 In equation (\autoref{eq:ecmwf1}) $\alpha_w=2\times10^{-4}$ is the thermal expansion coefficient of water,
 $\kappa=0.4$ is von K\'{a}rm\'{a}n's constant, $c_p$ is the heat capacity at constant pressure of sea water,
 $\rho_w$ is the water density, and $L$ is the Monin-Obukhov length.
 The tunable variable $\nu$ is a shape parameter that defines the expected subskin temperature profile via
-$T(z) = T(0) - \left( \frac{z}{D_T} \right)^\nu \Delta T_{\rm{wl}}$,
+$T(z) = T(0) - \left( \frac{z}{D_T} \right)^\nu \Delta T_{\mathrm{wl}}$,
 where $T$ is the absolute temperature and $z\le D_T$ is the depth below the top of the warm layer.
 The influence of wind on TAKAYA10 comes through the magnitude of the friction velocity of the water $u^*_{w}$,
@@ -82,10 +82,10 @@
 the diurnal layer, \ie
 \[
-  Q = Q_{\rm{sol}} + Q_{\rm{lw}} + Q_{\rm{h}}\mbox{,}
+  Q = Q_{\mathrm{sol}} + Q_{\mathrm{lw}} + Q_{\mathrm{h}}\mbox{,}
   % \label{eq:e_flux_eqn}
 \]
-where $Q_{\rm{h}}$ is the sensible and latent heat flux, $Q_{\rm{lw}}$ is the long wave flux,
-and $Q_{\rm{sol}}$ is the solar flux absorbed within the diurnal warm layer.
-For $Q_{\rm{sol}}$ the 9 term representation of \citet{gentemann.minnett.ea_JGR09} is used.
+where $Q_{\mathrm{h}}$ is the sensible and latent heat flux, $Q_{\mathrm{lw}}$ is the long wave flux,
+and $Q_{\mathrm{sol}}$ is the solar flux absorbed within the diurnal warm layer.
+For $Q_{\mathrm{sol}}$ the 9 term representation of \citet{gentemann.minnett.ea_JGR09} is used.
 In equation \autoref{eq:ecmwf1} the function $f(L_a)=\max(1,L_a^{\frac{2}{3}})$,
 where $L_a=0.3$\footnote{
@@ -119,10 +119,10 @@
 
 The cool skin is modelled using the framework of \citet{saunders_JAS67} who used a formulation of the near surface temperature difference based upon the heat flux and the friction velocity $u^*_{w}$.
-As the cool skin is so thin (~1\,mm) we ignore the solar flux component to the heat flux and the Saunders equation for the cool skin temperature difference $\Delta T_{\rm{cs}}$ becomes
+As the cool skin is so thin (~1\,mm) we ignore the solar flux component to the heat flux and the Saunders equation for the cool skin temperature difference $\Delta T_{\mathrm{cs}}$ becomes
 \[
   % \label{eq:sunders_eqn}
-  \Delta T_{\rm{cs}}=\frac{Q_{\rm{ns}}\delta}{k_t} \mbox{,}
+  \Delta T_{\mathrm{cs}}=\frac{Q_{\mathrm{ns}}\delta}{k_t} \mbox{,}
 \]
-where $Q_{\rm{ns}}$ is the, usually negative, non-solar heat flux into the ocean and
+where $Q_{\mathrm{ns}}$ is the, usually negative, non-solar heat flux into the ocean and
 $k_t$ is the thermal conductivity of sea water.
 $\delta$ is the thickness of the skin layer and is given by
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DOM.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DOM.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DOM.tex	(revision 11151)
@@ -40,5 +40,5 @@
 \begin{figure}[!tb]
   \begin{center}
-    \includegraphics[]{Fig_cell}
+    \includegraphics[width=\textwidth]{Fig_cell}
     \caption{
       \protect\label{fig:cell}
@@ -218,5 +218,5 @@
 \begin{figure}[!tb]
   \begin{center}
-    \includegraphics[]{Fig_index_hor}
+    \includegraphics[width=\textwidth]{Fig_index_hor}
     \caption{
       \protect\label{fig:index_hor}
@@ -272,5 +272,5 @@
 \begin{figure}[!pt]
   \begin{center}
-    \includegraphics[]{Fig_index_vert}
+    \includegraphics[width=\textwidth]{Fig_index_vert}
     \caption{
       \protect\label{fig:index_vert}
@@ -410,5 +410,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_zgr_e3}
+    \includegraphics[width=\textwidth]{Fig_zgr_e3}
     \caption{
       \protect\label{fig:zgr_e3}
@@ -471,5 +471,5 @@
 \begin{figure}[!tb]
   \begin{center}
-    \includegraphics[]{Fig_z_zps_s_sps}
+    \includegraphics[width=\textwidth]{Fig_z_zps_s_sps}
     \caption{
       \protect\label{fig:z_zps_s_sps}
@@ -593,5 +593,5 @@
 \begin{figure}[!tb]
   \begin{center}
-    \includegraphics[]{Fig_zgr}
+    \includegraphics[width=\textwidth]{Fig_zgr}
     \caption{
       \protect\label{fig:zgr}
@@ -859,5 +859,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[]{Fig_sco_function}
+    \includegraphics[width=\textwidth]{Fig_sco_function}
     \caption{
       \protect\label{fig:sco_function}
@@ -911,5 +911,5 @@
 %>>>>>>>>>>>>>>>>>>>>>>>>>>>>
 \begin{figure}[!ht]
-  \includegraphics[]{Fig_DOM_compare_coordinates_surface}
+  \includegraphics[width=\textwidth]{Fig_DOM_compare_coordinates_surface}
   \caption{
     A comparison of the \citet{song.haidvogel_JCP94} $S$-coordinate (solid lines),
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DYN.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DYN.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_DYN.tex	(revision 11151)
@@ -309,5 +309,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.70\textwidth]{Fig_DYN_een_triad}
+    \includegraphics[width=\textwidth]{Fig_DYN_een_triad}
     \caption{
       \protect\label{fig:DYN_een_triad}
@@ -862,14 +862,14 @@
 \begin{equation}
   \label{eq:BT_dyn}
-  \frac{\partial {\rm \overline{{\bf U}}_h} }{\partial t}=
-  -f\;{\rm {\bf k}}\times {\rm \overline{{\bf U}}_h}
-  -g\nabla _h \eta -\frac{c_b^{\textbf U}}{H+\eta} \rm {\overline{{\bf U}}_h} + \rm {\overline{\bf G}}
+  \frac{\partial {\mathrm \overline{{\mathbf U}}_h} }{\partial t}=
+  -f\;{\mathrm {\mathbf k}}\times {\mathrm \overline{{\mathbf U}}_h}
+  -g\nabla _h \eta -\frac{c_b^{\textbf U}}{H+\eta} \mathrm {\overline{{\mathbf U}}_h} + \mathrm {\overline{\mathbf G}}
 \end{equation}
 \[
   % \label{eq:BT_ssh}
-  \frac{\partial \eta }{\partial t}=-\nabla \cdot \left[ {\left( {H+\eta } \right) \; {\rm{\bf \overline{U}}}_h \,} \right]+P-E
+  \frac{\partial \eta }{\partial t}=-\nabla \cdot \left[ {\left( {H+\eta } \right) \; {\mathrm{\mathbf \overline{U}}}_h \,} \right]+P-E
 \]
 % \end{subequations}
-where $\rm {\overline{\bf G}}$ is a forcing term held constant, containing coupling term between modes,
+where $\mathrm {\overline{\mathbf G}}$ is a forcing term held constant, containing coupling term between modes,
 surface atmospheric forcing as well as slowly varying barotropic terms not explicitly computed to gain efficiency.
 The third term on the right hand side of \autoref{eq:BT_dyn} represents the bottom stress
@@ -884,5 +884,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.7\textwidth]{Fig_DYN_dynspg_ts}
+    \includegraphics[width=\textwidth]{Fig_DYN_dynspg_ts}
     \caption{
       \protect\label{fig:DYN_dynspg_ts}
@@ -1092,5 +1092,5 @@
   \[
     % \label{eq:spg_flt}
-    \frac{\partial {\rm {\bf U}}_h }{\partial t}= {\rm {\bf M}}
+    \frac{\partial {\mathrm {\mathbf U}}_h }{\partial t}= {\mathrm {\mathbf M}}
     - g \nabla \left( \tilde{\rho} \ \eta \right)
     - g \ T_c \nabla \left( \widetilde{\rho} \ \partial_t \eta \right)
@@ -1098,5 +1098,5 @@
   where $T_c$, is a parameter with dimensions of time which characterizes the force,
   $\widetilde{\rho} = \rho / \rho_o$ is the dimensionless density,
-  and $\rm {\bf M}$ represents the collected contributions of the Coriolis, hydrostatic pressure gradient,
+  and $\mathrm {\mathbf M}$ represents the collected contributions of the Coriolis, hydrostatic pressure gradient,
   non-linear and viscous terms in \autoref{eq:PE_dyn}.
 }   %end gmcomment
@@ -1152,8 +1152,8 @@
   \left\{
     \begin{aligned}
-      D_u^{l{\rm {\bf U}}} =\frac{1}{e_{1u} }\delta_{i+1/2} \left[ {A_T^{lm}
+      D_u^{l{\mathrm {\mathbf U}}} =\frac{1}{e_{1u} }\delta_{i+1/2} \left[ {A_T^{lm}
           \;\chi } \right]-\frac{1}{e_{2u} {\kern 1pt}e_{3u} }\delta_j \left[ 
         {A_f^{lm} \;e_{3f} \zeta } \right] \\ \\
-      D_v^{l{\rm {\bf U}}} =\frac{1}{e_{2v} }\delta_{j+1/2} \left[ {A_T^{lm}
+      D_v^{l{\mathrm {\mathbf U}}} =\frac{1}{e_{2v} }\delta_{j+1/2} \left[ {A_T^{lm}
           \;\chi } \right]+\frac{1}{e_{1v} {\kern 1pt}e_{3v} }\delta_i \left[ 
         {A_f^{lm} \;e_{3f} \zeta } \right]
@@ -1494,5 +1494,5 @@
 \end{equation}
 
-Note a small tolerance ($\mathrm{rn\_wdmin2}$) has been introduced here {\it [Q: Why is
+Note a small tolerance ($\mathrm{rn\_wdmin2}$) has been introduced here {\itshape [Q: Why is
 this necessary/desirable?]}. Substituting from (\ref{dyn_wd_continuity_coef}) gives an
 expression for the coefficient needed to multiply the outward flux at this cell in order
@@ -1541,5 +1541,5 @@
 %>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>
 \begin{figure}[!ht] \begin{center}
-\includegraphics[width=0.8\textwidth]{Fig_WAD_dynhpg}
+\includegraphics[width=\textwidth]{Fig_WAD_dynhpg}
 \caption{ \label{Fig_WAD_dynhpg}
 Illustrations of the three possible combinations of the logical variables controlling the
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_LBC.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_LBC.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_LBC.tex	(revision 11151)
@@ -56,5 +56,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_LBC_uv}
+    \includegraphics[width=\textwidth]{Fig_LBC_uv}
     \caption{
       \protect\label{fig:LBC_uv}
@@ -85,5 +85,5 @@
 \begin{figure}[!p]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_LBC_shlat}
+    \includegraphics[width=\textwidth]{Fig_LBC_shlat}
     \caption{
       \protect\label{fig:LBC_shlat}
@@ -194,5 +194,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_LBC_jperio}
+    \includegraphics[width=\textwidth]{Fig_LBC_jperio}
     \caption{
       \protect\label{fig:LBC_jperio}
@@ -218,5 +218,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_North_Fold_T}
+    \includegraphics[width=\textwidth]{Fig_North_Fold_T}
     \caption{
       \protect\label{fig:North_Fold_T}
@@ -280,5 +280,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_mpp}
+    \includegraphics[width=\textwidth]{Fig_mpp}
     \caption{
       \protect\label{fig:mpp}
@@ -360,5 +360,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_mppini2}
+    \includegraphics[width=\textwidth]{Fig_mppini2}
     \caption {
       \protect\label{fig:mppini2}
@@ -636,5 +636,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_LBC_bdy_geom}
+    \includegraphics[width=\textwidth]{Fig_LBC_bdy_geom}
     \caption {
       \protect\label{fig:LBC_bdy_geom}
@@ -670,5 +670,5 @@
 These restrictions mean that data files used with versions of the
 model prior to Version 3.4 may not work with Version 3.4 onwards.
-A \fortran utility {\it bdy\_reorder} exists in the TOOLS directory which
+A \fortran utility {\itshape bdy\_reorder} exists in the TOOLS directory which
 will re-order the data in old BDY data files.
 
@@ -676,5 +676,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_LBC_nc_header}
+    \includegraphics[width=\textwidth]{Fig_LBC_nc_header}
     \caption {
       \protect\label{fig:LBC_nc_header}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_LDF.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_LDF.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_LDF.tex	(revision 11151)
@@ -217,5 +217,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.70\textwidth]{Fig_LDF_ZDF1}
+    \includegraphics[width=\textwidth]{Fig_LDF_ZDF1}
     \caption {
       \protect\label{fig:LDF_ZDF1}
@@ -249,5 +249,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.70\textwidth]{Fig_eiv_slp}
+    \includegraphics[width=\textwidth]{Fig_eiv_slp}
     \caption{
       \protect\label{fig:eiv_slp}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_OBS.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_OBS.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_OBS.tex	(revision 11151)
@@ -573,18 +573,18 @@
 \subsubsection{Horizontal interpolation}
 
-Consider an observation point ${\rm P}$ with with longitude and latitude $({\lambda_{}}_{\rm P}, \phi_{\rm P})$ and
-the four nearest neighbouring model grid points ${\rm A}$, ${\rm B}$, ${\rm C}$ and ${\rm D}$ with
-longitude and latitude ($\lambda_{\rm A}$, $\phi_{\rm A}$),($\lambda_{\rm B}$, $\phi_{\rm B}$) etc.
+Consider an observation point ${\mathrm P}$ with with longitude and latitude $({\lambda_{}}_{\mathrm P}, \phi_{\mathrm P})$ and
+the four nearest neighbouring model grid points ${\mathrm A}$, ${\mathrm B}$, ${\mathrm C}$ and ${\mathrm D}$ with
+longitude and latitude ($\lambda_{\mathrm A}$, $\phi_{\mathrm A}$),($\lambda_{\mathrm B}$, $\phi_{\mathrm B}$) etc.
 All horizontal interpolation methods implemented in NEMO estimate the value of a model variable $x$ at point $P$ as
-a weighted linear combination of the values of the model variables at the grid points ${\rm A}$, ${\rm B}$ etc.:
+a weighted linear combination of the values of the model variables at the grid points ${\mathrm A}$, ${\mathrm B}$ etc.:
 \begin{align*}
-  {x_{}}_{\rm P} & \hspace{-2mm} = \hspace{-2mm} &
-                                                   \frac{1}{w} \left( {w_{}}_{\rm A} {x_{}}_{\rm A} +
-                                                   {w_{}}_{\rm B} {x_{}}_{\rm B} +
-                                                   {w_{}}_{\rm C} {x_{}}_{\rm C} +
-                                                   {w_{}}_{\rm D} {x_{}}_{\rm D} \right)
+  {x_{}}_{\mathrm P} & \hspace{-2mm} = \hspace{-2mm} &
+                                                   \frac{1}{w} \left( {w_{}}_{\mathrm A} {x_{}}_{\mathrm A} +
+                                                   {w_{}}_{\mathrm B} {x_{}}_{\mathrm B} +
+                                                   {w_{}}_{\mathrm C} {x_{}}_{\mathrm C} +
+                                                   {w_{}}_{\mathrm D} {x_{}}_{\mathrm D} \right)
 \end{align*}
-where ${w_{}}_{\rm A}$, ${w_{}}_{\rm B}$ etc. are the respective weights for the model field at
-points ${\rm A}$, ${\rm B}$ etc., and $w = {w_{}}_{\rm A} + {w_{}}_{\rm B} + {w_{}}_{\rm C} + {w_{}}_{\rm D}$.
+where ${w_{}}_{\mathrm A}$, ${w_{}}_{\mathrm B}$ etc. are the respective weights for the model field at
+points ${\mathrm A}$, ${\mathrm B}$ etc., and $w = {w_{}}_{\mathrm A} + {w_{}}_{\mathrm B} + {w_{}}_{\mathrm C} + {w_{}}_{\mathrm D}$.
 
 Four different possibilities are available for computing the weights.
@@ -592,20 +592,20 @@
 \begin{enumerate}
 
-\item[1.] {\bf Great-Circle distance-weighted interpolation.}
+\item[1.] {\bfseries Great-Circle distance-weighted interpolation.}
   The weights are computed as a function of the great-circle distance $s(P, \cdot)$ between $P$ and
   the model grid points $A$, $B$ etc.
-  For example, the weight given to the field ${x_{}}_{\rm A}$ is specified as the product of the distances
-  from ${\rm P}$ to the other points:
+  For example, the weight given to the field ${x_{}}_{\mathrm A}$ is specified as the product of the distances
+  from ${\mathrm P}$ to the other points:
   \begin{align*}
-    {w_{}}_{\rm A} = s({\rm P}, {\rm B}) \, s({\rm P}, {\rm C}) \, s({\rm P}, {\rm D})
+    {w_{}}_{\mathrm A} = s({\mathrm P}, {\mathrm B}) \, s({\mathrm P}, {\mathrm C}) \, s({\mathrm P}, {\mathrm D})
   \end{align*}
   where 
   \begin{align*}
-    s\left ({\rm P}, {\rm M} \right ) 
+    s\left ({\mathrm P}, {\mathrm M} \right ) 
      & \hspace{-2mm} = \hspace{-2mm} & 
       \cos^{-1} \! \left\{ 
-               \sin {\phi_{}}_{\rm P} \sin {\phi_{}}_{\rm M}
-             + \cos {\phi_{}}_{\rm P} \cos {\phi_{}}_{\rm M} 
-               \cos ({\lambda_{}}_{\rm M} - {\lambda_{}}_{\rm P}) 
+               \sin {\phi_{}}_{\mathrm P} \sin {\phi_{}}_{\mathrm M}
+             + \cos {\phi_{}}_{\mathrm P} \cos {\phi_{}}_{\mathrm M} 
+               \cos ({\lambda_{}}_{\mathrm M} - {\lambda_{}}_{\mathrm P}) 
                    \right\}
    \end{align*}
@@ -614,36 +614,36 @@
    involves the arcsine function (\eg see p.~101 of \citet{daley.barker_bk01}:
    \begin{align*}
-     s\left( {\rm P}, {\rm M} \right) & \hspace{-2mm} = \hspace{-2mm} & \sin^{-1} \! \left\{ \sqrt{ 1 - x^2 } \right\}
+     s\left( {\mathrm P}, {\mathrm M} \right) & \hspace{-2mm} = \hspace{-2mm} & \sin^{-1} \! \left\{ \sqrt{ 1 - x^2 } \right\}
    \end{align*}
    where
    \begin{align*}
      x & \hspace{-2mm} = \hspace{-2mm} &
-                                         {a_{}}_{\rm M} {a_{}}_{\rm P} + {b_{}}_{\rm M} {b_{}}_{\rm P} + {c_{}}_{\rm M} {c_{}}_{\rm P}
+                                         {a_{}}_{\mathrm M} {a_{}}_{\mathrm P} + {b_{}}_{\mathrm M} {b_{}}_{\mathrm P} + {c_{}}_{\mathrm M} {c_{}}_{\mathrm P}
    \end{align*}
    and 
    \begin{align*}
-      {a_{}}_{\rm M} & \hspace{-2mm} = \hspace{-2mm} & \sin {\phi_{}}_{\rm M}, \\
-      {a_{}}_{\rm P} & \hspace{-2mm} = \hspace{-2mm} & \sin {\phi_{}}_{\rm P}, \\
-      {b_{}}_{\rm M} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\rm M} \cos {\phi_{}}_{\rm M}, \\
-      {b_{}}_{\rm P} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\rm P} \cos {\phi_{}}_{\rm P}, \\
-      {c_{}}_{\rm M} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\rm M} \sin {\phi_{}}_{\rm M}, \\
-      {c_{}}_{\rm P} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\rm P} \sin {\phi_{}}_{\rm P}.
+      {a_{}}_{\mathrm M} & \hspace{-2mm} = \hspace{-2mm} & \sin {\phi_{}}_{\mathrm M}, \\
+      {a_{}}_{\mathrm P} & \hspace{-2mm} = \hspace{-2mm} & \sin {\phi_{}}_{\mathrm P}, \\
+      {b_{}}_{\mathrm M} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\mathrm M} \cos {\phi_{}}_{\mathrm M}, \\
+      {b_{}}_{\mathrm P} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\mathrm P} \cos {\phi_{}}_{\mathrm P}, \\
+      {c_{}}_{\mathrm M} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\mathrm M} \sin {\phi_{}}_{\mathrm M}, \\
+      {c_{}}_{\mathrm P} & \hspace{-2mm} = \hspace{-2mm} & \cos {\phi_{}}_{\mathrm P} \sin {\phi_{}}_{\mathrm P}.
   \end{align*}
 
-\item[2.] {\bf Great-Circle distance-weighted interpolation with small angle approximation.}
+\item[2.] {\bfseries Great-Circle distance-weighted interpolation with small angle approximation.}
   Similar to the previous interpolation but with the distance $s$ computed as
   \begin{align*}
-    s\left( {\rm P}, {\rm M} \right)
+    s\left( {\mathrm P}, {\mathrm M} \right)
     & \hspace{-2mm} = \hspace{-2mm} &
-                                      \sqrt{ \left( {\phi_{}}_{\rm M} - {\phi_{}}_{\rm P} \right)^{2}
-                                      + \left( {\lambda_{}}_{\rm M} - {\lambda_{}}_{\rm P} \right)^{2}
-                                      \cos^{2} {\phi_{}}_{\rm M} }
+                                      \sqrt{ \left( {\phi_{}}_{\mathrm M} - {\phi_{}}_{\mathrm P} \right)^{2}
+                                      + \left( {\lambda_{}}_{\mathrm M} - {\lambda_{}}_{\mathrm P} \right)^{2}
+                                      \cos^{2} {\phi_{}}_{\mathrm M} }
   \end{align*}
   where $M$ corresponds to $A$, $B$, $C$ or $D$.
 
-\item[3.] {\bf Bilinear interpolation for a regular spaced grid.}
+\item[3.] {\bfseries Bilinear interpolation for a regular spaced grid.}
   The interpolation is split into two 1D interpolations in the longitude and latitude directions, respectively.
 
-\item[4.] {\bf Bilinear remapping interpolation for a general grid.}
+\item[4.] {\bfseries Bilinear remapping interpolation for a general grid.}
   An iterative scheme that involves first mapping a quadrilateral cell into
   a cell with coordinates (0,0), (1,0), (0,1) and (1,1).
@@ -678,5 +678,5 @@
 \begin{figure}
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_OBS_avg_rec}
+    \includegraphics[width=\textwidth]{Fig_OBS_avg_rec}
     \caption{
       \protect\label{fig:obsavgrec}
@@ -691,5 +691,5 @@
 \begin{figure}
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_OBS_avg_rad}
+    \includegraphics[width=\textwidth]{Fig_OBS_avg_rad}
     \caption{
       \protect\label{fig:obsavgrad}
@@ -710,37 +710,37 @@
 This is the most difficult and time consuming part of the 2D interpolation procedure. 
 A robust test for determining if an observation falls within a given quadrilateral cell is as follows.
-Let ${\rm P}({\lambda_{}}_{\rm P} ,{\phi_{}}_{\rm P} )$ denote the observation point,
-and let ${\rm A}({\lambda_{}}_{\rm A} ,{\phi_{}}_{\rm A} )$, ${\rm B}({\lambda_{}}_{\rm B} ,{\phi_{}}_{\rm B} )$,
-${\rm C}({\lambda_{}}_{\rm C} ,{\phi_{}}_{\rm C} )$ and ${\rm D}({\lambda_{}}_{\rm D} ,{\phi_{}}_{\rm D} )$
+Let ${\mathrm P}({\lambda_{}}_{\mathrm P} ,{\phi_{}}_{\mathrm P} )$ denote the observation point,
+and let ${\mathrm A}({\lambda_{}}_{\mathrm A} ,{\phi_{}}_{\mathrm A} )$, ${\mathrm B}({\lambda_{}}_{\mathrm B} ,{\phi_{}}_{\mathrm B} )$,
+${\mathrm C}({\lambda_{}}_{\mathrm C} ,{\phi_{}}_{\mathrm C} )$ and ${\mathrm D}({\lambda_{}}_{\mathrm D} ,{\phi_{}}_{\mathrm D} )$
 denote the bottom left, bottom right, top left and top right corner points of the cell, respectively. 
 To determine if P is inside the cell, we verify that the cross-products 
 \begin{align*}
   \begin{array}{lllll}
-    {{\bf r}_{}}_{\rm PA} \times {{\bf r}_{}}_{\rm PC}
-    & = & [({\lambda_{}}_{\rm A}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm C}   \; -\; {\phi_{}}_{\rm P} )
-          - ({\lambda_{}}_{\rm C}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm A}   \; -\; {\phi_{}}_{\rm P} )] \; \widehat{\bf k} \\
-    {{\bf r}_{}}_{\rm PB} \times {{\bf r}_{}}_{\rm PA}
-    & = & [({\lambda_{}}_{\rm B}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm A}   \; -\; {\phi_{}}_{\rm P} )
-          - ({\lambda_{}}_{\rm A}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm B}   \; -\; {\phi_{}}_{\rm P} )] \; \widehat{\bf k} \\
-    {{\bf r}_{}}_{\rm PC} \times {{\bf r}_{}}_{\rm PD}
-    & = & [({\lambda_{}}_{\rm C}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm D}   \; -\; {\phi_{}}_{\rm P} )
-          - ({\lambda_{}}_{\rm D}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm C}   \; -\; {\phi_{}}_{\rm P} )] \; \widehat{\bf k} \\
-    {{\bf r}_{}}_{\rm PD} \times {{\bf r}_{}}_{\rm PB}
-    & = & [({\lambda_{}}_{\rm D}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm B}   \; -\; {\phi_{}}_{\rm P} )
-          - ({\lambda_{}}_{\rm B}\; -\; {\lambda_{}}_{\rm P} )
-          ({\phi_{}}_{\rm D}  \;  - \; {\phi_{}}_{\rm P} )] \; \widehat{\bf k} \\
+    {{\mathbf r}_{}}_{\mathrm PA} \times {{\mathbf r}_{}}_{\mathrm PC}
+    & = & [({\lambda_{}}_{\mathrm A}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm C}   \; -\; {\phi_{}}_{\mathrm P} )
+          - ({\lambda_{}}_{\mathrm C}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm A}   \; -\; {\phi_{}}_{\mathrm P} )] \; \widehat{\mathbf k} \\
+    {{\mathbf r}_{}}_{\mathrm PB} \times {{\mathbf r}_{}}_{\mathrm PA}
+    & = & [({\lambda_{}}_{\mathrm B}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm A}   \; -\; {\phi_{}}_{\mathrm P} )
+          - ({\lambda_{}}_{\mathrm A}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm B}   \; -\; {\phi_{}}_{\mathrm P} )] \; \widehat{\mathbf k} \\
+    {{\mathbf r}_{}}_{\mathrm PC} \times {{\mathbf r}_{}}_{\mathrm PD}
+    & = & [({\lambda_{}}_{\mathrm C}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm D}   \; -\; {\phi_{}}_{\mathrm P} )
+          - ({\lambda_{}}_{\mathrm D}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm C}   \; -\; {\phi_{}}_{\mathrm P} )] \; \widehat{\mathbf k} \\
+    {{\mathbf r}_{}}_{\mathrm PD} \times {{\mathbf r}_{}}_{\mathrm PB}
+    & = & [({\lambda_{}}_{\mathrm D}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm B}   \; -\; {\phi_{}}_{\mathrm P} )
+          - ({\lambda_{}}_{\mathrm B}\; -\; {\lambda_{}}_{\mathrm P} )
+          ({\phi_{}}_{\mathrm D}  \;  - \; {\phi_{}}_{\mathrm P} )] \; \widehat{\mathbf k} \\
   \end{array}
   % \label{eq:cross}
 \end{align*}
-point in the opposite direction to the unit normal $\widehat{\bf k}$
-(\ie that the coefficients of $\widehat{\bf k}$ are negative),
-where ${{\bf r}_{}}_{\rm PA}$, ${{\bf r}_{}}_{\rm PB}$, etc. correspond to
+point in the opposite direction to the unit normal $\widehat{\mathbf k}$
+(\ie that the coefficients of $\widehat{\mathbf k}$ are negative),
+where ${{\mathbf r}_{}}_{\mathrm PA}$, ${{\mathbf r}_{}}_{\mathrm PB}$, etc. correspond to
 the vectors between points P and A, P and B, etc..
 The method used is similar to the method used in the \href{https://github.com/SCRIP-Project/SCRIP}{SCRIP interpolation package}.
@@ -772,5 +772,5 @@
 \begin{figure}
   \begin{center}
-    \includegraphics[width=10cm,height=12cm,angle=-90.]{Fig_ASM_obsdist_local}
+    \includegraphics[width=\textwidth]{Fig_ASM_obsdist_local}
     \caption{
       \protect\label{fig:obslocal}
@@ -801,5 +801,5 @@
 \begin{figure}
   \begin{center}
-    \includegraphics[width=10cm,height=12cm,angle=-90.]{Fig_ASM_obsdist_global}
+    \includegraphics[width=\textwidth]{Fig_ASM_obsdist_global}
     \caption{
       \protect\label{fig:obsglobal}
@@ -1370,6 +1370,6 @@
 \begin{figure}
   \begin{center}
-    % \includegraphics[width=10cm,height=12cm,angle=-90.]{Fig_OBS_dataplot_main}
-    \includegraphics[width=9cm,angle=-90.]{Fig_OBS_dataplot_main}
+    % \includegraphics[width=\textwidth]{Fig_OBS_dataplot_main}
+    \includegraphics[width=\textwidth]{Fig_OBS_dataplot_main}
     \caption{
       \protect\label{fig:obsdataplotmain}
@@ -1386,6 +1386,6 @@
 \begin{figure}
   \begin{center}
-    % \includegraphics[width=10cm,height=12cm,angle=-90.]{Fig_OBS_dataplot_prof}
-    \includegraphics[width=7cm,angle=-90.]{Fig_OBS_dataplot_prof}
+    % \includegraphics[width=\textwidth]{Fig_OBS_dataplot_prof}
+    \includegraphics[width=\textwidth]{Fig_OBS_dataplot_prof}
     \caption{
       \protect\label{fig:obsdataplotprofile}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_SBC.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_SBC.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_SBC.tex	(revision 11151)
@@ -819,5 +819,5 @@
 \[
   % \label{eq:PE_dyn_tides}
-  \frac{\partial {\rm {\bf U}}_h }{\partial t}= ...
+  \frac{\partial {\mathrm {\mathbf U}}_h }{\partial t}= ...
   +g\nabla (\Pi_{eq} + \Pi_{sal})
 \]
@@ -1089,5 +1089,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.8\textwidth]{Fig_SBC_isf}
+    \includegraphics[width=\textwidth]{Fig_SBC_isf}
     \caption{
       \protect\label{fig:SBC_isf}
@@ -1438,5 +1438,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.8\textwidth]{Fig_SBC_diurnal}
+    \includegraphics[width=\textwidth]{Fig_SBC_diurnal}
     \caption{
       \protect\label{fig:SBC_diurnal}
@@ -1476,5 +1476,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.7\textwidth]{Fig_SBC_dcy}
+    \includegraphics[width=\textwidth]{Fig_SBC_dcy}
     \caption{
       \protect\label{fig:SBC_dcy}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_TRA.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_TRA.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_TRA.tex	(revision 11151)
@@ -90,5 +90,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_adv_scheme}
+    \includegraphics[width=\textwidth]{Fig_adv_scheme}
     \caption{
       \protect\label{fig:adv_scheme}
@@ -856,5 +856,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_TRA_Irradiance}
+    \includegraphics[width=\textwidth]{Fig_TRA_Irradiance}
     \caption{
       \protect\label{fig:traqsr_irradiance}
@@ -883,5 +883,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_TRA_geoth}
+    \includegraphics[width=\textwidth]{Fig_TRA_geoth}
     \caption{
       \protect\label{fig:geothermal}
@@ -994,5 +994,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_BBL_adv}
+    \includegraphics[width=\textwidth]{Fig_BBL_adv}
     \caption{
       \protect\label{fig:bbl}
@@ -1379,5 +1379,5 @@
 \begin{figure}[!p]
   \begin{center}
-    \includegraphics[]{Fig_partial_step_scheme}
+    \includegraphics[width=\textwidth]{Fig_partial_step_scheme}
     \caption{
       \protect\label{fig:Partial_step_scheme}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_ZDF.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_ZDF.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_ZDF.tex	(revision 11151)
@@ -237,5 +237,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.00\textwidth]{Fig_mixing_length}
+    \includegraphics[width=\textwidth]{Fig_mixing_length}
     \caption{
       \protect\label{fig:mixing_length}
@@ -414,5 +414,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=1.00\textwidth]{Fig_ZDF_TKE_time_scheme}
+    \includegraphics[width=\textwidth]{Fig_ZDF_TKE_time_scheme}
     \caption{
       \protect\label{fig:TKE_time_scheme}
@@ -676,5 +676,5 @@
 \begin{figure}[!htb]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_npc}
+    \includegraphics[width=\textwidth]{Fig_npc}
     \caption{
       \protect\label{fig:npc}
@@ -839,5 +839,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.99\textwidth]{Fig_zdfddm}
+    \includegraphics[width=\textwidth]{Fig_zdfddm}
     \caption{
       \protect\label{fig:zdfddm}
@@ -1041,5 +1041,5 @@
 the last wet layer in each column by:
 \[
-  C_D = \left ( {\kappa \over {\rm log}\left ( 0.5e_{3t}/rn\_bfrz0 \right ) } \right )^2
+  C_D = \left ( {\kappa \over {\mathrm log}\left ( 0.5e_{3t}/rn\_bfrz0 \right ) } \right )^2
 \]
 
@@ -1285,5 +1285,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_ZDF_M2_K1_tmx}
+    \includegraphics[width=\textwidth]{Fig_ZDF_M2_K1_tmx}
     \caption{
       \protect\label{fig:ZDF_M2_K1_tmx}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_conservation.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_conservation.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_conservation.tex	(revision 11151)
@@ -65,5 +65,5 @@
   % \label{eq:vor_vorticity}
   \int_D {{\textbf {k}}\cdot \frac{1}{e_3 }\nabla \times \left( {\varsigma
-        \;{\rm {\bf k}}\times {\textbf {U}}_h } \right)\;dv} =0
+        \;{\mathrm {\mathbf k}}\times {\textbf {U}}_h } \right)\;dv} =0
 \]
 
@@ -189,7 +189,7 @@
 \[
   % \label{eq:dynldf_dyn}
-  \int\limits_D {\frac{1}{e_3 }{\rm {\bf k}}\cdot \nabla \times \left[ {\nabla
+  \int\limits_D {\frac{1}{e_3 }{\mathrm {\mathbf k}}\cdot \nabla \times \left[ {\nabla
         _h \left( {A^{lm}\;\chi } \right)-\nabla _h \times \left( {A^{lm}\;\zeta
-            \;{\rm {\bf k}}} \right)} \right]\;dv} =0
+            \;{\mathrm {\mathbf k}}} \right)} \right]\;dv} =0
 \]
 
@@ -197,5 +197,5 @@
   % \label{eq:dynldf_div}
   \int\limits_D {\nabla _h \cdot \left[ {\nabla _h \left( {A^{lm}\;\chi }
-        \right)-\nabla _h \times \left( {A^{lm}\;\zeta \;{\rm {\bf k}}} \right)}
+        \right)-\nabla _h \times \left( {A^{lm}\;\zeta \;{\mathrm {\mathbf k}}} \right)}
     \right]\;dv} =0
 \]
@@ -203,6 +203,6 @@
 \[
   % \label{eq:dynldf_curl}
-  \int_D {{\rm {\bf U}}_h \cdot \left[ {\nabla _h \left( {A^{lm}\;\chi }
-        \right)-\nabla _h \times \left( {A^{lm}\;\zeta \;{\rm {\bf k}}} \right)}
+  \int_D {{\mathrm {\mathbf U}}_h \cdot \left[ {\nabla _h \left( {A^{lm}\;\chi }
+        \right)-\nabla _h \times \left( {A^{lm}\;\zeta \;{\mathrm {\mathbf k}}} \right)}
     \right]\;dv} \leqslant 0
 \]
@@ -210,7 +210,7 @@
 \[
   % \label{eq:dynldf_curl2}
-  \mbox{if}\quad A^{lm}=cste\quad \quad \int_D {\zeta \;{\rm {\bf k}}\cdot
+  \mbox{if}\quad A^{lm}=cste\quad \quad \int_D {\zeta \;{\mathrm {\mathbf k}}\cdot
     \nabla \times \left[ {\nabla _h \left( {A^{lm}\;\chi } \right)-\nabla _h
-        \times \left( {A^{lm}\;\zeta \;{\rm {\bf k}}} \right)} \right]\;dv}
+        \times \left( {A^{lm}\;\zeta \;{\mathrm {\mathbf k}}} \right)} \right]\;dv}
   \leqslant 0
 \]
@@ -220,5 +220,5 @@
   \mbox{if}\quad A^{lm}=cste\quad \quad \int_D {\chi \;\nabla _h \cdot \left[
       {\nabla _h \left( {A^{lm}\;\chi } \right)-\nabla _h \times \left(
-          {A^{lm}\;\zeta \;{\rm {\bf k}}} \right)} \right]\;dv} \leqslant 0
+          {A^{lm}\;\zeta \;{\mathrm {\mathbf k}}} \right)} \right]\;dv} \leqslant 0
 \]
 
@@ -260,10 +260,10 @@
   % \label{eq:dynzdf_vor}
   \begin{aligned}
-    & \int_D {\frac{1}{e_3 }{\rm {\bf k}}\cdot \nabla \times \left( {\frac{1}{e_3
-          }\frac{\partial }{\partial k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\rm
-                  {\bf U}}_h }{\partial k}} \right)} \right)\;dv} =0 \\
-    & \int_D {\zeta \,{\rm {\bf k}}\cdot \nabla \times \left( {\frac{1}{e_3
-          }\frac{\partial }{\partial k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\rm
-                  {\bf U}}_h }{\partial k}} \right)} \right)\;dv} \leq 0 \\
+    & \int_D {\frac{1}{e_3 }{\mathrm {\mathbf k}}\cdot \nabla \times \left( {\frac{1}{e_3
+          }\frac{\partial }{\partial k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\mathrm
+                  {\mathbf U}}_h }{\partial k}} \right)} \right)\;dv} =0 \\
+    & \int_D {\zeta \,{\mathrm {\mathbf k}}\cdot \nabla \times \left( {\frac{1}{e_3
+          }\frac{\partial }{\partial k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\mathrm
+                  {\mathbf U}}_h }{\partial k}} \right)} \right)\;dv} \leq 0 \\
   \end{aligned}
 \]
@@ -273,8 +273,8 @@
   \begin{aligned}
     &\int_D {\nabla \cdot \left( {\frac{1}{e_3 }\frac{\partial }{\partial
-            k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\rm {\bf U}}_h }{\partial k}}
+            k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\mathrm {\mathbf U}}_h }{\partial k}}
           \right)} \right)\;dv} =0 \\
     & \int_D {\chi \;\nabla \cdot \left( {\frac{1}{e_3 }\frac{\partial }{\partial
-            k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\rm {\bf U}}_h }{\partial k}}
+            k}\left( {\frac{A^{vm}}{e_3 }\frac{\partial {\mathrm {\mathbf U}}_h }{\partial k}}
           \right)} \right)\;dv} \leq 0 \\
   \end{aligned}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_misc.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_misc.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_misc.tex	(revision 11151)
@@ -63,6 +63,6 @@
 \begin{figure}[!tbp]
   \begin{center}
-    \includegraphics[width=0.80\textwidth]{Fig_Gibraltar}
-    \includegraphics[width=0.80\textwidth]{Fig_Gibraltar2}
+    \includegraphics[width=\textwidth]{Fig_Gibraltar}
+    \includegraphics[width=\textwidth]{Fig_Gibraltar2}
     \caption{
       \protect\label{fig:MISC_strait_hand}
@@ -84,5 +84,5 @@
 \begin{figure}[!tbp]
   \begin{center}
-    \includegraphics[width=1.0\textwidth]{Fig_closea_mask_example}
+    \includegraphics[width=\textwidth]{Fig_closea_mask_example}
     \caption{
       \protect\label{fig:closea_mask_example}
@@ -122,8 +122,8 @@
 
 \begin{enumerate}
-\item{{\bf No ``closea\_mask'' field is included in domain configuration
+\item{{\bfseries No ``closea\_mask'' field is included in domain configuration
   file.} In this case the closea module does nothing.}
 
-\item{{\bf A field called closea\_mask is included in the domain
+\item{{\bfseries A field called closea\_mask is included in the domain
 configuration file and ln\_closea=.false. in namelist namcfg.} In this
 case the inland seas defined by the closea\_mask field are filled in
@@ -131,5 +131,5 @@
 closea\_mask that is nonzero is set to be a land point.}
 
-\item{{\bf A field called closea\_mask is included in the domain
+\item{{\bfseries A field called closea\_mask is included in the domain
 configuration file and ln\_closea=.true. in namelist namcfg.} Each
 inland sea or group of inland seas is set to a positive integer value
@@ -140,5 +140,5 @@
 closea\_mask is zero).}
 
-\item{{\bf Fields called closea\_mask and closea\_mask\_rnf are
+\item{{\bfseries Fields called closea\_mask and closea\_mask\_rnf are
 included in the domain configuration file and ln\_closea=.true. in
 namelist namcfg.} This option works as for option 3, except that if
@@ -154,5 +154,5 @@
 ocean.}
 
-\item{{\bf Fields called closea\_mask and closea\_mask\_emp are
+\item{{\bfseries Fields called closea\_mask and closea\_mask\_emp are
 included in the domain configuration file and ln\_closea=.true. in
 namelist namcfg.} This option works the same as option 4 except that
@@ -223,5 +223,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_LBC_zoom}
+    \includegraphics[width=\textwidth]{Fig_LBC_zoom}
     \caption{
       \protect\label{fig:LBC_zoom}
@@ -314,5 +314,5 @@
 This alternative method should give identical results to the default \textsc{ALLGATHER} method and
 is recommended for large values of \np{jpni}.
-The new method is activated by setting \np{ln\_nnogather} to be true ({\bf nammpp}).
+The new method is activated by setting \np{ln\_nnogather} to be true (\ngn{nammpp}).
 The reproducibility of results using the two methods should be confirmed for each new,
 non-reference configuration.
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics.tex	(revision 11151)
@@ -120,5 +120,5 @@
 \begin{figure}[!ht]
   \begin{center}
-    \includegraphics[]{Fig_I_ocean_bc}
+    \includegraphics[width=\textwidth]{Fig_I_ocean_bc}
     \caption{
       \protect\label{fig:ocean_bc}
@@ -323,5 +323,5 @@
 \begin{figure}[!tb]
   \begin{center}
-    \includegraphics[]{Fig_I_earth_referential}
+    \includegraphics[width=\textwidth]{Fig_I_earth_referential}
     \caption{
       \protect\label{fig:referential}
@@ -738,5 +738,5 @@
 \begin{figure}[!b]
   \begin{center}
-    \includegraphics[]{Fig_z_zstar}
+    \includegraphics[width=\textwidth]{Fig_z_zstar}
     \caption{
       \protect\label{fig:z_zstar}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_model_basics_zstar.tex	(revision 11151)
@@ -147,5 +147,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[width=0.90\textwidth]{Fig_DYN_dynspg_ts}
+    \includegraphics[width=\textwidth]{Fig_DYN_dynspg_ts}
     \caption{
       \protect\label{fig:DYN_dynspg_ts}
Index: /NEMO/trunk/doc/latex/NEMO/subfiles/chap_time_domain.tex
===================================================================
--- /NEMO/trunk/doc/latex/NEMO/subfiles/chap_time_domain.tex	(revision 11150)
+++ /NEMO/trunk/doc/latex/NEMO/subfiles/chap_time_domain.tex	(revision 11151)
@@ -197,5 +197,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_TimeStepping_flowchart}
+    \includegraphics[width=\textwidth]{Fig_TimeStepping_flowchart}
     \caption{
       \protect\label{fig:TimeStep_flowchart}
@@ -261,5 +261,5 @@
 \begin{figure}[!t]
   \begin{center}
-    \includegraphics[]{Fig_MLF_forcing}
+    \includegraphics[width=\textwidth]{Fig_MLF_forcing}
     \caption{
       \protect\label{fig:MLF_forcing}
